Metagenome Family F097520

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097520
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	53 residues
Representative Sequence	MGNLFTNEKETRRAIKAAVDKYNEIYSNHTVVKHQRSRHTKSKTQAPRKLRRNR
Number of Associated Samples	58
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	26.92 %
% of genes near scaffold ends (potentially truncated)	36.54 %
% of genes from short scaffolds (< 2000 bps)	90.38 %
Associated GOLD sequencing projects	51
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (91.346 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (64.423 % of family members)
Environment Ontology (ENVO)	Unclassified (97.115 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (97.115 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.71% β-sheet: 0.00% Coil/Unstructured: 68.29%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF08291	Peptidase_M15_3	5.77
PF00476	DNA_pol_A	1.92
PF07282	OrfB_Zn_ribbon	0.96
PF01106	NifU	0.96
PF02945	Endonuclease_7	0.96
PF13759	2OG-FeII_Oxy_5	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	Replication, recombination and repair [L]	1.92
COG0694	Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain	Posttranslational modification, protein turnover, chaperones [O]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.35 %
All Organisms	root	All Organisms	8.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.35 %
cellular organisms	root	All Organisms → cellular organisms	6.73 %
Viruses	superkingdom	All Organisms → Viruses	1.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.35 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	4.81 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.35 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.92 %
unclassified Archaea	no rank	All Organisms → cellular organisms → Archaea → unclassified Archaea	0.96 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.35 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.92 %
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	0.96 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.96 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.35 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.92 %
Acidiferrobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales	0.96 %
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	0.96 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.35 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.92 %
Acidiferrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae	0.96 %
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	0.96 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.35 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.92 %
unclassified Acidiferrobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae → unclassified Acidiferrobacteraceae	0.96 %
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	0.96 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.35 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.92 %
Acidiferrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae → unclassified Acidiferrobacteraceae → Acidiferrobacteraceae bacterium	0.96 %
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	0.96 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002511\|JGI25131J35506_1013025	Not Available	1144	Open in IMG/M
3300006304\|Ga0068504_1104502	Not Available	839	Open in IMG/M
3300006308\|Ga0068470_1222815	Not Available	798	Open in IMG/M
3300006310\|Ga0068471_1209945	Not Available	935	Open in IMG/M
3300006310\|Ga0068471_1357913	Not Available	1128	Open in IMG/M
3300006310\|Ga0068471_1646222	Not Available	3131	Open in IMG/M
3300006336\|Ga0068502_1134339	Not Available	5732	Open in IMG/M
3300006336\|Ga0068502_1728818	Not Available	1156	Open in IMG/M
3300006340\|Ga0068503_10326209	Not Available	2456	Open in IMG/M
3300006340\|Ga0068503_10354518	Not Available	583	Open in IMG/M
3300006340\|Ga0068503_10420635	Not Available	2605	Open in IMG/M
3300006340\|Ga0068503_10436854	Not Available	884	Open in IMG/M
3300006340\|Ga0068503_10459329	Not Available	1206	Open in IMG/M
3300006340\|Ga0068503_10510789	All Organisms → cellular organisms → Bacteria → Proteobacteria	1163	Open in IMG/M
3300006347\|Ga0099697_1176407	Not Available	897	Open in IMG/M
3300006736\|Ga0098033_1198034	Not Available	557	Open in IMG/M
3300006736\|Ga0098033_1200717	Not Available	552	Open in IMG/M
3300006738\|Ga0098035_1064772	Not Available	1311	Open in IMG/M
3300006738\|Ga0098035_1231409	Not Available	612	Open in IMG/M
3300006751\|Ga0098040_1006631	Not Available	4198	Open in IMG/M
3300006751\|Ga0098040_1036922	Not Available	1547	Open in IMG/M
3300006751\|Ga0098040_1053500	All Organisms → Viruses → Predicted Viral	1252	Open in IMG/M
3300006751\|Ga0098040_1203500	Not Available	578	Open in IMG/M
3300006751\|Ga0098040_1231588	Not Available	536	Open in IMG/M
3300006753\|Ga0098039_1054686	Not Available	1393	Open in IMG/M
3300006753\|Ga0098039_1175464	Not Available	729	Open in IMG/M
3300006753\|Ga0098039_1180434	Not Available	718	Open in IMG/M
3300006753\|Ga0098039_1240871	Not Available	609	Open in IMG/M
3300006754\|Ga0098044_1109518	Not Available	1127	Open in IMG/M
3300006754\|Ga0098044_1220824	Not Available	740	Open in IMG/M
3300006754\|Ga0098044_1325008	Not Available	586	Open in IMG/M
3300006754\|Ga0098044_1351067	Not Available	559	Open in IMG/M
3300006754\|Ga0098044_1411585	Not Available	507	Open in IMG/M
3300006754\|Ga0098044_1411844	Not Available	507	Open in IMG/M
3300006789\|Ga0098054_1145305	Not Available	877	Open in IMG/M
3300006789\|Ga0098054_1215816	Not Available	697	Open in IMG/M
3300006793\|Ga0098055_1263180	Not Available	647	Open in IMG/M
3300006922\|Ga0098045_1107412	Not Available	655	Open in IMG/M
3300006923\|Ga0098053_1031410	Not Available	1127	Open in IMG/M
3300006923\|Ga0098053_1038380	Not Available	1005	Open in IMG/M
3300006923\|Ga0098053_1066523	Not Available	735	Open in IMG/M
3300006924\|Ga0098051_1145765	Not Available	627	Open in IMG/M
3300006926\|Ga0098057_1052738	Not Available	997	Open in IMG/M
3300006927\|Ga0098034_1058689	Not Available	1127	Open in IMG/M
3300006927\|Ga0098034_1100411	Not Available	829	Open in IMG/M
3300006927\|Ga0098034_1159625	Not Available	635	Open in IMG/M
3300006927\|Ga0098034_1184275	Not Available	584	Open in IMG/M
3300006928\|Ga0098041_1121454	Not Available	842	Open in IMG/M
3300006928\|Ga0098041_1207760	Not Available	626	Open in IMG/M
3300006929\|Ga0098036_1029766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1715	Open in IMG/M
3300006947\|Ga0075444_10402921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae → unclassified Acidiferrobacteraceae → Acidiferrobacteraceae bacterium	514	Open in IMG/M
3300007963\|Ga0110931_1063315	Not Available	1116	Open in IMG/M
3300008050\|Ga0098052_1113584	Not Available	1094	Open in IMG/M
3300008050\|Ga0098052_1176607	Not Available	837	Open in IMG/M
3300008050\|Ga0098052_1222915	Not Available	727	Open in IMG/M
3300008216\|Ga0114898_1062910	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1159	Open in IMG/M
3300008216\|Ga0114898_1203219	Not Available	549	Open in IMG/M
3300008217\|Ga0114899_1024737	Not Available	2288	Open in IMG/M
3300008219\|Ga0114905_1257826	Not Available	547	Open in IMG/M
3300009412\|Ga0114903_1032807	Not Available	1276	Open in IMG/M
3300009593\|Ga0115011_11044994	Not Available	694	Open in IMG/M
3300009604\|Ga0114901_1212699	Not Available	555	Open in IMG/M
3300009605\|Ga0114906_1295443	Not Available	515	Open in IMG/M
3300009619\|Ga0105236_1049880	Not Available	555	Open in IMG/M
3300010149\|Ga0098049_1245548	Not Available	544	Open in IMG/M
3300010151\|Ga0098061_1261884	Not Available	601	Open in IMG/M
3300010151\|Ga0098061_1285625	Not Available	569	Open in IMG/M
3300010153\|Ga0098059_1155022	Not Available	901	Open in IMG/M
3300010153\|Ga0098059_1173594	Not Available	845	Open in IMG/M
3300010153\|Ga0098059_1223737	Not Available	729	Open in IMG/M
3300010155\|Ga0098047_10343024	Not Available	562	Open in IMG/M
3300010155\|Ga0098047_10410865	Not Available	506	Open in IMG/M
3300017775\|Ga0181432_1196319	Not Available	632	Open in IMG/M
3300017775\|Ga0181432_1236205	Not Available	576	Open in IMG/M
3300017775\|Ga0181432_1266445	Not Available	541	Open in IMG/M
3300017775\|Ga0181432_1281325	Not Available	527	Open in IMG/M
3300020390\|Ga0211555_10310552	Not Available	587	Open in IMG/M
3300021442\|Ga0206685_10313547	Not Available	534	Open in IMG/M
3300021443\|Ga0206681_10149003	Not Available	916	Open in IMG/M
3300021791\|Ga0226832_10051181	Not Available	1424	Open in IMG/M
3300021791\|Ga0226832_10122991	Not Available	966	Open in IMG/M
3300025027\|Ga0207885_112092	Not Available	566	Open in IMG/M
3300025043\|Ga0207907_118570	Not Available	639	Open in IMG/M
3300025045\|Ga0207901_1038701	Not Available	641	Open in IMG/M
3300025049\|Ga0207898_1025828	Not Available	745	Open in IMG/M
3300025050\|Ga0207892_1011533	Not Available	936	Open in IMG/M
3300025052\|Ga0207906_1029204	Not Available	759	Open in IMG/M
3300025069\|Ga0207887_1025529	Not Available	941	Open in IMG/M
3300025096\|Ga0208011_1012324	Not Available	2334	Open in IMG/M
3300025096\|Ga0208011_1048163	Not Available	994	Open in IMG/M
3300025103\|Ga0208013_1174691	Not Available	500	Open in IMG/M
3300025109\|Ga0208553_1082731	All Organisms → cellular organisms → Eukaryota	759	Open in IMG/M
3300025109\|Ga0208553_1129525	Not Available	565	Open in IMG/M
3300025112\|Ga0209349_1007199	Not Available	4601	Open in IMG/M
3300025128\|Ga0208919_1005080	Not Available	6015	Open in IMG/M
3300025128\|Ga0208919_1039086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1675	Open in IMG/M
3300025128\|Ga0208919_1097082	Not Available	951	Open in IMG/M
3300025128\|Ga0208919_1155896	Not Available	705	Open in IMG/M
3300025133\|Ga0208299_1036490	All Organisms → Viruses	1989	Open in IMG/M
3300025270\|Ga0208813_1016876	Not Available	1906	Open in IMG/M
3300025277\|Ga0208180_1004696	Not Available	5241	Open in IMG/M
3300025277\|Ga0208180_1088876	Not Available	706	Open in IMG/M
3300025300\|Ga0208181_1015079	Not Available	1992	Open in IMG/M
3300032278\|Ga0310345_10470627	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	90.38%
Strait	Environmental → Aquatic → Marine → Strait	3.85%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.92%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.92%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	1.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	76.92%
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	12.50%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	3.85%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.92%
Diffuse Flow	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow	1.92%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	0.96%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	64.42%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	12.50%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	10.58%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	3.85%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	1.92%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	1.92%
Hydrothermal Vent Fluids	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids	1.92%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	0.96%
Marine Oceanic	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic	0.96%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002511	Marine viral communities from the Pacific Ocean - ETNP_2_1000	Environmental	Open in IMG/M
3300006304	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_1000m	Environmental	Open in IMG/M
3300006308	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0500m	Environmental	Open in IMG/M
3300006310	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m	Environmental	Open in IMG/M
3300006336	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500m	Environmental	Open in IMG/M
3300006340	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m	Environmental	Open in IMG/M
3300006347	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_1000m	Environmental	Open in IMG/M
3300006736	Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG	Environmental	Open in IMG/M
3300006738	Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG	Environmental	Open in IMG/M
3300006751	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG	Environmental	Open in IMG/M
3300006753	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG	Environmental	Open in IMG/M
3300006754	Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG	Environmental	Open in IMG/M
3300006789	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG	Environmental	Open in IMG/M
3300006793	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG	Environmental	Open in IMG/M
3300006922	Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG	Environmental	Open in IMG/M
3300006923	Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG	Environmental	Open in IMG/M
3300006924	Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG	Environmental	Open in IMG/M
3300006926	Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG	Environmental	Open in IMG/M
3300006927	Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG	Environmental	Open in IMG/M
3300006928	Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG	Environmental	Open in IMG/M
3300006929	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG	Environmental	Open in IMG/M
3300006947	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA	Environmental	Open in IMG/M
3300007963	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)	Environmental	Open in IMG/M
3300008050	Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG	Environmental	Open in IMG/M
3300008216	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar	Environmental	Open in IMG/M
3300008217	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215	Environmental	Open in IMG/M
3300008219	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05	Environmental	Open in IMG/M
3300009412	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s2	Environmental	Open in IMG/M
3300009593	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome	Environmental	Open in IMG/M
3300009604	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16	Environmental	Open in IMG/M
3300009605	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9	Environmental	Open in IMG/M
3300009619	Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3827_250	Environmental	Open in IMG/M
3300010149	Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG	Environmental	Open in IMG/M
3300010151	Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG	Environmental	Open in IMG/M
3300010153	Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG	Environmental	Open in IMG/M
3300010155	Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG	Environmental	Open in IMG/M
3300017775	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17	Environmental	Open in IMG/M
3300020390	Marine microbial communities from Tara Oceans - TARA_B100002049 (ERX555953-ERR598985)	Environmental	Open in IMG/M
3300021442	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015	Environmental	Open in IMG/M
3300021443	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 12015	Environmental	Open in IMG/M
3300021791	Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer	Environmental	Open in IMG/M
3300025027	Marine viral communities from the Pacific Ocean - LP-31 (SPAdes)	Environmental	Open in IMG/M
3300025043	Marine viral communities from the Subarctic Pacific Ocean - LP-52 (SPAdes)	Environmental	Open in IMG/M
3300025045	Marine viral communities from the Pacific Ocean - LP-46 (SPAdes)	Environmental	Open in IMG/M
3300025049	Marine viral communities from the Pacific Ocean - LP-55 (SPAdes)	Environmental	Open in IMG/M
3300025050	Marine viral communities from the Pacific Ocean - LP-54 (SPAdes)	Environmental	Open in IMG/M
3300025052	Marine viral communities from the Pacific Ocean - LP-37 (SPAdes)	Environmental	Open in IMG/M
3300025069	Marine viral communities from the Pacific Ocean - LP-38 (SPAdes)	Environmental	Open in IMG/M
3300025096	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)	Environmental	Open in IMG/M
3300025103	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)	Environmental	Open in IMG/M
3300025109	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes)	Environmental	Open in IMG/M
3300025112	Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)	Environmental	Open in IMG/M
3300025128	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)	Environmental	Open in IMG/M
3300025133	Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)	Environmental	Open in IMG/M
3300025270	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904 (SPAdes)	Environmental	Open in IMG/M
3300025277	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 (SPAdes)	Environmental	Open in IMG/M
3300025300	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6 (SPAdes)	Environmental	Open in IMG/M
3300032278	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25131J35506_10130251	3300002511	Marine	MVKLFTNEKETRRAIKAAVDKYNEIYSNHTVVKHQRSRHTKSKTQAQGKLRRNR*
Ga0068504_11045021	3300006304	Marine	MKENLFTNEKETRRAIKAAVDKYNEIYSNHTVVKHQRSRHTKSKTQAQGKLRRNR*
Ga0068470_12228155	3300006308	Marine	MVNLFTNEKETRRAIQAAVDKYNEIYCSNSVIKHQRSRHRKSKAQAPRKLR
Ga0068471_12099453	3300006310	Marine	MVNLFTNEKETRRAIKAAVDKYNEIYSNHTVTKYQRNRHTKSKTQAQRQLRRNR*
Ga0068471_13579132	3300006310	Marine	MKENLFTNEKETRRAIQAAVDKYNEIYSNNTLTKHKRSRHTKSKTQAQGKLRRNR*
Ga0068471_16462222	3300006310	Marine	MVNLFTNEKETRRAIKAAVDKYNEIYCSNSVIKHQRSRHTKSKTQAQRKLRRNR*
Ga0068502_113433912	3300006336	Marine	MVKLFTNEKETKRAIKAAVDKYNEIYSNHTVVKHQRSRHRKSKTQAPRKLRRNR*
Ga0068502_17288183	3300006336	Marine	MKENLFTNEKETRRAIKAAVDKYNEIYSNHTVVKHQRSRHTISKALTQRKLRRHS*
Ga0068503_103262094	3300006340	Marine	MGNLFTNEKETRRAIQAAVDQYNEIYSNHTVVKHQRSRHTKSKTQAQGKLRRNR*
Ga0068503_103545182	3300006340	Marine	MANLFTNEKETKRAIKAAVDKYNEIYSNNTLTKHKRSRHTKSKTQAQGKLRRNR*
Ga0068503_104206354	3300006340	Marine	VVKLFTNEKETRRAIKAAVDKYNEIYSNHTVIKHQRSRHTKSKTQAPRKLRRNR*
Ga0068503_104368543	3300006340	Marine	MGKLFTNEKETRRAIKAAVDKYNEIYSAHTVVKHQRSRHTKSKAQAQGKLRRNR*
Ga0068503_104593293	3300006340	Marine	MKENLFTNEKETRRAIKAAVDKYNEIYSHHPVVKHQRSRHRKSKTQAPRKLRRNR*
Ga0068503_105107892	3300006340	Marine	MKLFTNEKETRRAIKTAVDKYNEIYSNHTVVKHQRSRHTKSKTQAPWKLRRNR*
Ga0099697_11764072	3300006347	Marine	MGNLFTNEKETRRAIKAAVDKYNEIYSNHTVVKHQRSRHTKSKTQAPRKLRRNR*
Ga0098033_11980341	3300006736	Marine	MKENLFTNEKETRRAIKAAVDRYNEIYSDYPIVKHQRSRHSKSKTQAQGKLRRDR*
Ga0098033_12007173	3300006736	Marine	MVKLFTNEKETRRAIKAAVDKYNEIYSHHTVVKHQRGRHTKSKTQAPRKLRRHS*
Ga0098035_10647725	3300006738	Marine	MEKLFTNQKEVDRAIQAAVDQYNEIYSNNSSVKHKRSRHSKSKTKAPRKLRRNR*
Ga0098035_12314092	3300006738	Marine	MAKLFTNQKEIDRAIQAAVDQYNEVYSSNSSVKHKRHRRSKTQAPRKLRRNR*
Ga0098040_10066319	3300006751	Marine	MLKQKSCKTANLFTNQKEVDRAIQAAVDQYNEIYSNNSSVKHKRSRHTKNKTKAPRKLRRNR*
Ga0098040_10369221	3300006751	Marine	KEIDRAIQAAVDKYNEIYSSNSSIKHKRNRHRKSQIQAQRELRRNR*
Ga0098040_10535002	3300006751	Marine	MAKLFTNQKEINRAIQAAVDQYNEIYSNNTLAKHKRSRHTKSKTQAQRKLRRNR*
Ga0098040_12035001	3300006751	Marine	KAAVDKYNEIYSNNTTIKHKRSRHPKSKTQAPRKLRWNR*
Ga0098040_12315881	3300006751	Marine	MGRLFTNQKEVDRAIQAAVDKHNEIYRRNSIIKHQRSRHTKSKTQAPRKLRQDR*
Ga0098039_10546862	3300006753	Marine	MKENLFTNEKETRRAIQAAVDKYNEIYSNHTIVKHQRSRHTKGKTQAPRKLRRNR*
Ga0098039_11754642	3300006753	Marine	MAKLFTNQKEVDRAIKAAVDKYNEIYGNHTLVKHKRSRHRKNKTQAQGKLRRNR*
Ga0098039_11804341	3300006753	Marine	MLKQKSCKTANLFTNQKEVDRAIQAAVDQYNEIYSNNSSVKHKRSRHTKNKTKAPRKLRRNG*
Ga0098039_12408711	3300006753	Marine	ENLFTNEKETRRAIKAAVDRYNEIYSHYPIVKHQRSRHSKSKTQAPRKLRRNR*
Ga0098044_11095181	3300006754	Marine	KLFTNQKEVDRAIQAAVDQYNEVYSSDSSVKHKRHRRSKTQAPRKLRRNR*
Ga0098044_12208244	3300006754	Marine	MEKLFTNQKEVDRAIQAAVDQYNEVYSNNTLVKHKRSRHTKSKTQAHRKLRRNGKRLG*
Ga0098044_13250082	3300006754	Marine	MKEKLFTNQSEVDRAIRATVDKYNEIHGSDTIVKHQRSRHRKSQTQAQRTQLRRNR*
Ga0098044_13510672	3300006754	Marine	MAKLFTNQKEVDRAIQAAVDKYNEIYSNTPIKHQRNRHRKSKTQVSRKLRRNR*
Ga0098044_14115854	3300006754	Marine	MAKLFTNQKEIDRAIQAAVDKYNEIYSSNSSVKHKRSRHSKSKTQAQRKLR
Ga0098044_14118442	3300006754	Marine	MAKLFTNQKEIDRAIQAAVDKYNEIYSNNTLVKHKRSRHSKSKTQAPRKLRGNR*
Ga0098054_11453052	3300006789	Marine	MKEKLFTNQSEVDRAIQAAVNKYNEIHGSDTIVKHQRSRHRKSQTQAQRTQLRRNR
Ga0098054_12158162	3300006789	Marine	MPKPKSLTMGRLFTNQKEVDRAIQAAVDKHNEIYRRNSIIKHQRSRHTKSKTQAPRKLRR
Ga0098055_12631802	3300006793	Marine	MEKLFTNQKEVDRAIQAAVDQYNEIYSNNTLAKHQRSRHTKSKTQAPRKLRRDR*
Ga0098045_11074121	3300006922	Marine	MVKLFTNQKEVDRAIQAAVDQYNEIYSNNTLIKHQRSRHPKSKTQAP
Ga0098053_10314101	3300006923	Marine	MFRPKHLTMEKLFTNQKEVDRAIQAAVDQYNEVYSNNTLVKHKRSRHTKSKTQAHRKLRR
Ga0098053_10383802	3300006923	Marine	MGRLFTNQKEVDRAIQAAVDKHNEIYRRNSIIKHQRSRHTKSKTQAPRKLRRGR*
Ga0098053_10665231	3300006923	Marine	RLFTNQKEVDRAIQAAVDKYNEIYSNNTLTKHKRSRYTKSKTQAPRKLRRNR*
Ga0098051_11457653	3300006924	Marine	MAKLFTNQKEIDRAIQAAVDKYNEIYNNNTLVKHKRSRHPKSKTQAPRKLRRNR*
Ga0098057_10527382	3300006926	Marine	MGKLFTNQKEVDRAIQAAVDKYNEIYSSNSSVKHKRSRHPKSKTQTQRKLRRNR*
Ga0098034_10586894	3300006927	Marine	MAKLFTNQKEVDRAIQAAVDKYNEIYSSYTIVKHKRSRHRKSKTQAQGKLRRNR*
Ga0098034_11004111	3300006927	Marine	MKENLFTNEKETRRAIKAAVDKYNEIYSNHTVVKHQRSRHRKSKTQAPRKL
Ga0098034_11596252	3300006927	Marine	MKGKLFTNQREVDRAIQAAVDKYNEIYSNNTTIKHQRSRHRKGKTQTRRAQLRQNR*
Ga0098034_11842752	3300006927	Marine	MKENLFTNEKETRRAIQAAVDKYNEIYSNHTIVKHQRSRHTKGKTQAQRKLRRNR*
Ga0098041_11214541	3300006928	Marine	MKENLFTNEKETRRAIKAAVDKYNEIYSSHTIVKHQRSRHRKSKTQAPRKLRWNR*
Ga0098041_12077602	3300006928	Marine	MPKQKSCKTANLFTNQKEVDRAIQAAADQYEIYRNNIVVKHKRDRRQKSKTQAPRKLRRNR*
Ga0098036_10297666	3300006929	Marine	MANLFTNEKETRRAIKAAVDKYNEIYSNHTVVKHKRSRHRKSKTQAQGKLRRNR*
Ga0075444_104029212	3300006947	Marine	MGKLFTNEKETRRAIQAAVDKYNEIYSNHTVVKHQRSRHRKSKAQAQRKLRRIR*
Ga0110931_10633151	3300007963	Marine	MVKLFTNQKEVDRAIQAAVDQYNEIYSNNTLTKHQRSRHTKSKTQAPRKLRRDR*
Ga0098052_11135841	3300008050	Marine	MVKLFTNQKEVDRAIQAAVDQYNEIYSNNTLAKHQRSRHTKSKTQAPRKLRRDR*
Ga0098052_11766074	3300008050	Marine	MAKLFTNQKEVDRAIRAAVDQYNEVYSNNTLVKHKRSRHTKSKT
Ga0098052_12229151	3300008050	Marine	MAKLFTNQKEIDRAIQAAVDKYNEIYSSNSSVKHKRSRHRKSQIQAQR
Ga0114898_10629103	3300008216	Deep Ocean	MAKLFTNQKEVDRAIQAAVDQYEKYRRHTLVKHKRSRHTKSKTQAPRKLRRNR*
Ga0114898_12032193	3300008216	Deep Ocean	MEKLFTNQKELDRAIQAAVDRYNEIYSNNTTIKHKRSRHRKSETQAQRKLRWNR*
Ga0114899_10247372	3300008217	Deep Ocean	MEKLFTNQKELDRAIQAAVDKYNEIYSNNTTIKHKRSRHRKSETQAQRKLRWNR*
Ga0114905_12578262	3300008219	Deep Ocean	LDRAIQAAVDKYNEIYSNNTTIKHKRSRHRKSETQAQRKLRWNR*
Ga0114903_10328071	3300009412	Deep Ocean	TNEKETRRAIKAAVDKYNEIYSNNSSVKHKRSRHSKSKTQTQRELRRNR*
Ga0115011_110449944	3300009593	Marine	MAKLFTNQKEIDRAIQAAVDKYNEIYSSNSSIKHKRSRHTKGKTQAQRKLQRNR*
Ga0114901_12126992	3300009604	Deep Ocean	EVDRAIQAAVDQYEIHRRYTLAKYKRSRHRKSKTQAPWKLRRNR*
Ga0114906_12954431	3300009605	Deep Ocean	LFTNEKETRRAIKAAVDKYNEIYSHHTVIKHQRSRHRKSKTQAPRKLRRNR*
Ga0105236_10498801	3300009619	Marine Oceanic	MAKLFTNQKEIDRAIQAAVDKYNEIYSNTPIKHQRNRHRKSKTQVSRKLRRNR*
Ga0098049_12455481	3300010149	Marine	QKEIDRAIQAAVDKYNEIYNNNTLVKHKRSRHPKSKTQAPRKLRRNR*
Ga0098061_12618841	3300010151	Marine	MVKLFTNQKEVDRAIQAAVDQYNEIYSNNTLIKHQRSRHPKSKTQAPRKLRRDR*
Ga0098061_12856251	3300010151	Marine	MAKLFTNQKEVDRAIQAAVDQYEKYRHHTLVKHKRSRHTKSKTQAPRKLRRNR*
Ga0098059_11550223	3300010153	Marine	MAKLFTNQKEVDRAIQAAVDKYNEIYSNTPIKHQRNRHRKSKTQVSQKLRRNR*
Ga0098059_11735941	3300010153	Marine	ENLFTNEKETRRAIKAAVDKYNEIYSNHTVVKHQRSRHTKSKTQAPRKLRRSR*
Ga0098059_12237372	3300010153	Marine	MEKLFTNQKEVDRAIQAAVDQYNEVYSNNTTIKHKRSRHTKSKTQAHRKLRRNGKRLG*
Ga0098047_103430241	3300010155	Marine	NEKETRRAIQAAVDKYNEIYSNHTVVKHQRSRHTKSKTQAPRKLRRNR*
Ga0098047_104108651	3300010155	Marine	TNEKETRRAIKAAVDKYNEIYSNHTPIKHKRSRHTKSKTQTQRELRRNR*
Ga0181432_11963193	3300017775	Seawater	ETRRAIKAAVDQYEIYSNHTVIKYQRSRHRKSEAQTQGKLRRNR
Ga0181432_12362051	3300017775	Seawater	KENLFTNEKETRRAIKAAVDKYNEIYSNHTVVKHQRSRHTKSKTQTQRKLRRNR
Ga0181432_12664451	3300017775	Seawater	FTNEKETRRAIKAAVDKHNEIYSNHTVVKHQRSRHRKNKAQAQGKLRKSC
Ga0181432_12813251	3300017775	Seawater	IRRDIFKQEILEMGKLFTNEKETRRAIKAAVDKYNEIYCSDSVIKHQRSRHRKSKTQARGKLRGNR
Ga0211555_103105521	3300020390	Marine	KENLFTNEKETRRAIKAAVDKYNEIYSNHTVVKHQRSRHTKSKTQAPRKLRRNR
Ga0206685_103135471	3300021442	Seawater	MKENLFTNEKETRRAIKAAVDKYNEIYSNNTTIKHQRGRHTKSKTQAPRKLRRNGKCL
Ga0206681_101490031	3300021443	Seawater	KMVKLFTNEKETRRAIQAAVDKYNEIYCSNSVIEYQRSRHRKSKTQAQGKLRRNR
Ga0226832_100511815	3300021791	Hydrothermal Vent Fluids	NQKEVDRAIQAAVDKYNEIYSHHPVVKHQRSRHQKGKTQTPRKLRRNR
Ga0226832_101229913	3300021791	Hydrothermal Vent Fluids	MAKLFTNQKEVNRAIQAAVDQYEIYINYTLAKHERSRHRKSKTQAPRKLRRNR
Ga0207885_1120922	3300025027	Marine	MVKLFTNEKETRRAIKAAVDKYNEIYSNHTVIKHQRSRHTKSKTQAQGKLRRNR
Ga0207907_1185702	3300025043	Marine	MGNLFTNEKETRRAIKAAVDKYNEIYSNHTVVKHQRSRHTKSKTQAQGKLRRNR
Ga0207901_10387011	3300025045	Marine	VVKLFTNEKETRRAIKAAVDKYNEIYSNHTVVKHKRSRHTKSKTQAP
Ga0207898_10258281	3300025049	Marine	MVKLFTNEKETGRAIKAAVDKYNEIYSNHTVVKHQRSRHTKSKTQAPRKL
Ga0207892_10115335	3300025050	Marine	MKENLFTNEKETRRAIQAAVDKYNEIYSNHTVVKHQRSRHTKSKTQAPRKLRRNR
Ga0207906_10292043	3300025052	Marine	MVNLFTNEKETRRAIKAAVDKYNEIYSNHTVVKHQRSRHRKGKTQAPRKLRRHS
Ga0207887_10255294	3300025069	Marine	MGKLFTNEKETRRAIQAAVDKYNEICSNHTVVKHQRNRHTKSKTQAPRKLRRHS
Ga0208011_10123245	3300025096	Marine	MLKQKSCKTANLFTNQKEVDRAIQAAVDQYNEIYSNNSSVKHKRSRHTKNKTKAPRKLRRNR
Ga0208011_10481631	3300025096	Marine	MAKLFTNQKEINRAIQAAVDQYNEIYSNNTLAKHKRSRHTKSKTQAQRKLRRNR
Ga0208013_11746911	3300025103	Marine	MVKLFTNQKEVDRAIQAAVDQYNEIYSNNTLIKHQRSRHPKSKTQAPRKLRRDR
Ga0208553_10827311	3300025109	Marine	MEKLFTNQKEVDRAIQAAVDQYNEVYSNNTLVKHKRSRHTKSKTQ
Ga0208553_11295252	3300025109	Marine	MSKPKYLTMAKLFTNQKEVDRAIQAAVDKYNETYGNHITVKHKRSRHRKSETQAPRKLRRNR
Ga0209349_10071992	3300025112	Marine	MARLFTNQKEIDRAIQAAVDKYNEIYSHHPIVKHQRSGHQKGKTQTRRKLRRNR
Ga0208919_100508015	3300025128	Marine	FTNQKEIDRAIQAAVDKYNEIYSHHPIVKHQRSGHQKGKTQTRRKLRRNR
Ga0208919_10390866	3300025128	Marine	NLFTNEKETRRAIKAAVDKYNEIYSNHTVVKHKRSRHRKSKTQAQGKLRRNR
Ga0208919_10970821	3300025128	Marine	MAKLFTNQKEVDRAIQAAVDQYEIYRRHTLAKHKRSRHTKSKTQAQWKLRRNR
Ga0208919_11558961	3300025128	Marine	MLKQKSCKTANLFTNQKEVDRAIQAAVDQYNEIYSNNSSVKHKRSRHTKNKTKAPRKLRRNG
Ga0208299_10364906	3300025133	Marine	MEKLFTNQKEVDRAIQAAVDQYNEVYSSNSSVKHKRHRRSKTQAPRKLRRNR
Ga0208813_10168762	3300025270	Deep Ocean	MEKLFTNQKELDRAIQAAVDKYNEIYSNNTTIKHKRSRHRKSETQAQRKLRWNR
Ga0208180_10046963	3300025277	Deep Ocean	MENLFTNEKEIRRAIKAAVGKYNEIYCNNSAVKHQRNRHRKSKAQAPRKLRRGR
Ga0208180_10888762	3300025277	Deep Ocean	MVDLFTNEKETRRAIKAAVDKYNEIYCSNSVIKHQRSRHRKSKTQAQGKLRRNR
Ga0208181_10150792	3300025300	Deep Ocean	MENLFTNEKEIRRAIKAAVGKYNEIYCNNSAVKHQRNRHRKSKAQALRKLRRGR
Ga0310345_104706273	3300032278	Seawater	MKENLFTNEKETRRAIKAAVDQYEIYSNHTVIKYQRSRHRKSEAQTQGKLRRNR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F097520

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences