Metagenome / Metatranscriptome Family F097553

Basic Information
Family ID	F097553
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	46 residues
Representative Sequence	IRVVRRDGDKITEYIVDYDAIIKGDLKQDILLRPGDRIIVP
Number of Associated Samples	94
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	97.12 %
% of genes from short scaffolds (< 2000 bps)	96.15 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Most Common Taxonomy
Group	Bacteria (98.077 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (10.577 % of family members)
Environment Ontology (ENVO)	Unclassified (35.577 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (34.615 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.04% β-sheet: 21.74% Coil/Unstructured: 65.22%
Feature Viewer

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Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF02706	Wzz	88.46
PF13807	GNVR	1.92
PF11959	DUF3473	0.96
PF01522	Polysacc_deac_1	0.96
PF02371	Transposase_20	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	Cell wall/membrane/envelope biogenesis [M]	88.46
COG3524	Capsule polysaccharide export protein KpsE/RkpR	Cell wall/membrane/envelope biogenesis [M]	88.46
COG3765	LPS O-antigen chain length determinant protein, WzzB/FepE family	Cell wall/membrane/envelope biogenesis [M]	88.46
COG3944	Capsular polysaccharide biosynthesis protein YveK	Cell wall/membrane/envelope biogenesis [M]	88.46
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.96
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.08 %
Unclassified	root	N/A	1.92 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.08 %
Unclassified	root	N/A	1.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.08 %
Unclassified	root	N/A	1.92 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	92.31 %
Unclassified	root	N/A	1.92 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	74.04 %
Unclassified	root	N/A	1.92 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	74.04 %
Unclassified	root	N/A	1.92 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	67.31 %
Unclassified	root	N/A	1.92 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	67.31 %
Unclassified	root	N/A	1.92 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_105888885	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1374	Open in IMG/M
3300000596\|KanNP_Total_noBrdU_T14TCDRAFT_1038121	All Organisms → cellular organisms → Bacteria → Proteobacteria	540	Open in IMG/M
3300000789\|JGI1027J11758_12415246	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1046	Open in IMG/M
3300000955\|JGI1027J12803_100255606	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	933	Open in IMG/M
3300000955\|JGI1027J12803_105862145	All Organisms → cellular organisms → Bacteria → Proteobacteria	526	Open in IMG/M
3300002090\|JGI24806J26614_1009512	All Organisms → cellular organisms → Bacteria	1602	Open in IMG/M
3300002123\|C687J26634_10093859	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1076	Open in IMG/M
3300002243\|C687J29039_10056077	All Organisms → cellular organisms → Bacteria → Proteobacteria	1521	Open in IMG/M
3300002530\|C687J35503_10108981	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	706	Open in IMG/M
3300003994\|Ga0055435_10233159	All Organisms → cellular organisms → Bacteria → Proteobacteria	538	Open in IMG/M
3300004156\|Ga0062589_102212720	All Organisms → cellular organisms → Bacteria → Proteobacteria	563	Open in IMG/M
3300004479\|Ga0062595_100121095	All Organisms → cellular organisms → Bacteria	1448	Open in IMG/M
3300004778\|Ga0062383_10256281	All Organisms → cellular organisms → Bacteria → Proteobacteria	826	Open in IMG/M
3300004801\|Ga0058860_11849395	All Organisms → cellular organisms → Bacteria → Proteobacteria	1188	Open in IMG/M
3300005295\|Ga0065707_10347399	All Organisms → cellular organisms → Bacteria → Proteobacteria	924	Open in IMG/M
3300005332\|Ga0066388_101233390	All Organisms → cellular organisms → Bacteria	1282	Open in IMG/M
3300005356\|Ga0070674_100079851	All Organisms → cellular organisms → Bacteria → Proteobacteria	2335	Open in IMG/M
3300005471\|Ga0070698_100332176	All Organisms → cellular organisms → Bacteria → Proteobacteria	1451	Open in IMG/M
3300005536\|Ga0070697_100454157	All Organisms → cellular organisms → Bacteria	1116	Open in IMG/M
3300005981\|Ga0081538_10226161	All Organisms → cellular organisms → Bacteria → Proteobacteria	736	Open in IMG/M
3300006237\|Ga0097621_100967236	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	795	Open in IMG/M
3300006797\|Ga0066659_10480363	All Organisms → cellular organisms → Bacteria → Proteobacteria	993	Open in IMG/M
3300006845\|Ga0075421_102382989	All Organisms → cellular organisms → Bacteria → Proteobacteria	554	Open in IMG/M
3300006852\|Ga0075433_11299185	All Organisms → cellular organisms → Bacteria → Proteobacteria	630	Open in IMG/M
3300006852\|Ga0075433_11495627	All Organisms → cellular organisms → Bacteria → Proteobacteria	583	Open in IMG/M
3300006894\|Ga0079215_11157692	All Organisms → cellular organisms → Bacteria → Proteobacteria	585	Open in IMG/M
3300006904\|Ga0075424_100338288	All Organisms → cellular organisms → Bacteria → Proteobacteria	1603	Open in IMG/M
3300007004\|Ga0079218_11247098	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300007004\|Ga0079218_13206950	All Organisms → cellular organisms → Bacteria → Proteobacteria	553	Open in IMG/M
3300007076\|Ga0075435_101371861	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	619	Open in IMG/M
3300009038\|Ga0099829_11683548	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	522	Open in IMG/M
3300009090\|Ga0099827_11023651	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	717	Open in IMG/M
3300009094\|Ga0111539_10386991	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1628	Open in IMG/M
3300009094\|Ga0111539_12046847	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	664	Open in IMG/M
3300009162\|Ga0075423_10021906	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	6353	Open in IMG/M
3300009162\|Ga0075423_12112780	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	611	Open in IMG/M
3300009444\|Ga0114945_10580748	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	678	Open in IMG/M
3300009545\|Ga0105237_11276211	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	741	Open in IMG/M
3300009597\|Ga0105259_1073660	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	784	Open in IMG/M
3300010046\|Ga0126384_11045390	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	746	Open in IMG/M
3300010046\|Ga0126384_11109132	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	726	Open in IMG/M
3300010047\|Ga0126382_10662551	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	869	Open in IMG/M
3300010400\|Ga0134122_12489745	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	566	Open in IMG/M
3300010401\|Ga0134121_11963968	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	616	Open in IMG/M
3300011271\|Ga0137393_11205339	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	642	Open in IMG/M
3300011430\|Ga0137423_1166993	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	664	Open in IMG/M
3300012175\|Ga0137321_1112541	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	613	Open in IMG/M
3300012361\|Ga0137360_11864945	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	507	Open in IMG/M
3300012901\|Ga0157288_10275135	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	577	Open in IMG/M
3300012948\|Ga0126375_10564218	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	862	Open in IMG/M
3300012951\|Ga0164300_10031831	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1944	Open in IMG/M
3300012958\|Ga0164299_10909657	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	639	Open in IMG/M
3300012960\|Ga0164301_10249979	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1164	Open in IMG/M
3300012971\|Ga0126369_10235743	All Organisms → cellular organisms → Bacteria	1791	Open in IMG/M
3300012985\|Ga0164308_10181249	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1587	Open in IMG/M
3300012988\|Ga0164306_11541609	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	571	Open in IMG/M
3300014326\|Ga0157380_13289374	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	517	Open in IMG/M
3300014968\|Ga0157379_12061882	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	565	Open in IMG/M
3300015242\|Ga0137412_10680923	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	768	Open in IMG/M
3300015373\|Ga0132257_100957549	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1075	Open in IMG/M
3300015374\|Ga0132255_100801588	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1404	Open in IMG/M
3300015374\|Ga0132255_101386188	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1062	Open in IMG/M
3300016341\|Ga0182035_10673920	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	899	Open in IMG/M
3300017792\|Ga0163161_10726247	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	829	Open in IMG/M
3300018028\|Ga0184608_10407721	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	589	Open in IMG/M
3300018029\|Ga0187787_10057774	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1161	Open in IMG/M
3300018029\|Ga0187787_10432248	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	526	Open in IMG/M
3300018031\|Ga0184634_10106974	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1226	Open in IMG/M
3300018063\|Ga0184637_10030384	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3270	Open in IMG/M
3300018071\|Ga0184618_10216343	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	804	Open in IMG/M
3300018078\|Ga0184612_10521129	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	577	Open in IMG/M
3300018081\|Ga0184625_10443981	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	665	Open in IMG/M
3300018082\|Ga0184639_10274515	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	889	Open in IMG/M
3300018084\|Ga0184629_10569690	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	581	Open in IMG/M
3300018422\|Ga0190265_10242343	Not Available	1845	Open in IMG/M
3300020021\|Ga0193726_1363765	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	525	Open in IMG/M
3300022563\|Ga0212128_10723740	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	596	Open in IMG/M
3300025164\|Ga0209521_10601211	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	554	Open in IMG/M
3300025165\|Ga0209108_10195438	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1048	Open in IMG/M
3300025167\|Ga0209642_10006335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7406	Open in IMG/M
3300025290\|Ga0207673_1051675	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	582	Open in IMG/M
3300025318\|Ga0209519_10109733	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1624	Open in IMG/M
3300025322\|Ga0209641_10710563	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	686	Open in IMG/M
3300025899\|Ga0207642_11086112	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	517	Open in IMG/M
3300025936\|Ga0207670_11663844	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	543	Open in IMG/M
3300025986\|Ga0207658_10907069	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	802	Open in IMG/M
3300027513\|Ga0208685_1056088	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	851	Open in IMG/M
3300027843\|Ga0209798_10345551	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	705	Open in IMG/M
3300027843\|Ga0209798_10528296	Not Available	534	Open in IMG/M
3300027846\|Ga0209180_10204489	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1138	Open in IMG/M
3300027862\|Ga0209701_10693669	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	526	Open in IMG/M
3300027907\|Ga0207428_11205748	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	526	Open in IMG/M
3300027910\|Ga0209583_10630498	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	550	Open in IMG/M
3300030619\|Ga0268386_11010465	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	511	Open in IMG/M
3300031716\|Ga0310813_10354268	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1251	Open in IMG/M
3300031753\|Ga0307477_10751243	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	650	Open in IMG/M
3300031908\|Ga0310900_11199955	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	631	Open in IMG/M
3300031949\|Ga0214473_10484103	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1384	Open in IMG/M
3300032157\|Ga0315912_10353734	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1160	Open in IMG/M
3300032180\|Ga0307471_101198559	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	923	Open in IMG/M
3300032180\|Ga0307471_101614995	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	804	Open in IMG/M
3300032892\|Ga0335081_10398104	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1773	Open in IMG/M
3300033557\|Ga0316617_101721764	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	638	Open in IMG/M
3300033814\|Ga0364930_0284123	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	558	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.92%
Host-Associated	Host-Associated	23.08%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	58.65%
Plants	Host-Associated → Plants	22.12%
Aquatic	Environmental → Aquatic	18.27%
Human	Host-Associated → Human	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.42%
Sediment	Environmental → Aquatic → Sediment	12.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.77%
Freshwater	Environmental → Aquatic → Freshwater	2.88%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.92%
Roots	Host-Associated → Plants → Roots	1.92%
Marine	Environmental → Aquatic → Marine	0.96%
Floodplain	Environmental → Terrestrial → Floodplain	0.96%
Digestive System	Host-Associated → Human → Digestive System	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.23%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	12.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.50%
Loam	Environmental → Terrestrial → Soil → Loam	9.62%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.88%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.92%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.92%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.96%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.96%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	12.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.50%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.81%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	4.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.85%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.85%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.96%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.96%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.96%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.96%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.58%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.62%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	7.69%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	4.81%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.85%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	2.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.88%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	1.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.92%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.96%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.96%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000596	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002090	Soil microbial communities from Manhattan, Kansas, USA - Sample 200um MDA	Environmental	Open in IMG/M
3300002123	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_3	Environmental	Open in IMG/M
3300002243	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2	Environmental	Open in IMG/M
3300002530	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_3	Environmental	Open in IMG/M
3300003994	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009444	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009597	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300011430	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT600_2	Environmental	Open in IMG/M
3300012175	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT399_2	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018029	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MG	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300022563	OV2_combined assembly	Environmental	Open in IMG/M
3300025164	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 4	Environmental	Open in IMG/M
3300025165	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1	Environmental	Open in IMG/M
3300025167	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2 (SPAdes)	Environmental	Open in IMG/M
3300025290	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5	Host-Associated	Open in IMG/M
3300025318	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 1	Environmental	Open in IMG/M
3300025322	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1 (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027513	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890 (SPAdes)	Environmental	Open in IMG/M
3300027843	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M
3300033814	Sediment microbial communities from East River floodplain, Colorado, United States - 55_j17	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097553

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1058888852	3300000364	Soil	RDGSKVTEYVVDYDAIIKGDLKQDVLLRPGDRIIVP*
KanNP_Total_noBrdU_T14TCDRAFT_10381211	3300000596	Soil	TIFADRSNIRVVRREGNRVTEYIADYDGIIKGDLKQDILLRPGDRIIVP*
JGI1027J11758_124152462	3300000789	Soil	ADRDKIRVVRRAGEKVTEYIVDYDAIIKGDLQQDILLRPGDRVVVR*
JGI1027J12803_1002556061	3300000955	Soil	GDKITEYVVDYDAILKGDLKQDILLRPGDRIIVP*
JGI1027J12803_1058621452	3300000955	Soil	TRSGGLGIFADRSNIRIVRREGPKITEYIVDYDAIIKGDLKQDLLLRPGDRIIIP*
JGI24806J26614_10095122	3300002090	Soil	RAGGLGVFADRSNIRVVRRDGSRVTEYTVDYDAIIKGDLKQDVLLRPGDRVIVQ*
C687J26634_100938591	3300002123	Soil	TGDKVTEYVSDYDAIVAGDLKQDIILRPGDRIIVP*
C687J29039_100560771	3300002243	Soil	RAGGPTIFAQRRDIKTVRRTGDKVTEYVSDYDAIVAGDLKQDIILRPGDRIIVP*
C687J35503_101089812	3300002530	Soil	LQLITRAGGPTIFAQRRDIKTVRRTGDKVTEYVSDYDAIVAGDLKQDIILRPGDRIIVP*
Ga0055435_102331591	3300003994	Natural And Restored Wetlands	ITRMGGLGIFADRSNIRIVRRDGVKITEYVVDYDAIINGDLKQDLLLRPGDRVIIP*
Ga0062589_1022127201	3300004156	Soil	RNIRISRRQGEKITEFVVDYDAILEGDLKQDILLKPGDRIVVP*
Ga0062595_1001210952	3300004479	Soil	FADRSNIRVVRRDGSRVTEYTVDYDAIIKGDLKQDVLLRPGDRVIVR*
Ga0062383_102562812	3300004778	Wetland Sediment	LNGNESLLQLITRAGGLTIFADRRNIKTVRRNGDRVMEFLSDYEAILTGDFKQDIILKPGDRIIVP*
Ga0058860_118493951	3300004801	Host-Associated	FADRRNIRISRRQGEKITEFVVDYDAILEGDLKQDILLKPGDRIVVP*
Ga0065707_103473992	3300005295	Switchgrass Rhizosphere	IRVVRREGDKITEYIADYDGIIKGDLKHDILLRPGDRIIVP*
Ga0066388_1012333902	3300005332	Tropical Forest Soil	IFADRSNIRVVRREGDKVTEYIADYDGIIKGDLKQDILLRPGDRIIVP*
Ga0070674_1000798513	3300005356	Miscanthus Rhizosphere	VVRREGNRVTEYTVDYDAIIKGDLKQDVLLRPGDRVIVP*
Ga0070698_1003321761	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	GGLTIFAKHDNIRVVRRAGEKVTEYIVDYNAILKGDLEQDILLRPGDRIVVR*
Ga0070697_1004541572	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	GIFDDRKNIRVVRRDGDKITEYIVDYDAIIKGDLKQDILLRPGDRIIVP*
Ga0081538_102261611	3300005981	Tabebuia Heterophylla Rhizosphere	VVRRDGDKVTEYIADYDGIIKGDLKQDILLRPGDRIIVP*
Ga0097621_1009672362	3300006237	Miscanthus Rhizosphere	MRRSEGKVTEFIVDYDAILKGDLKQDILLRPGDRVLVP*
Ga0066659_104803631	3300006797	Soil	DGDKVTEYVADYDGIIKGDLKQDILLRPGDRIIVP*
Ga0075421_1023829891	3300006845	Populus Rhizosphere	IRVVRRDGVKITEYVADYDGIIKGDLRQDILLRPGDRIIVP*
Ga0075433_112991852	3300006852	Populus Rhizosphere	SNIRVVRREGSKVTEYTVDYDAIIKGDLRQDVLLRPGDRIIVP*
Ga0075433_114956271	3300006852	Populus Rhizosphere	VFDDRRNVRVVRRDGDKITEYVVDYDAILKGDLKQDILLRPGDRIIVP*
Ga0079215_111576921	3300006894	Agricultural Soil	SVFANRSNIRVVRRDGDRVTEYIVDYDAIINGDLKQDVLLRPGDRIIVP*
Ga0075424_1003382882	3300006904	Populus Rhizosphere	EGSKVTEYIVDYDAIIKGDLKQDVLLRPGDRIIVP*
Ga0079218_112470982	3300007004	Agricultural Soil	DGDRVTEYIVDYDAIINGDLKQDVLLRPGDRIIVP*
Ga0079218_132069502	3300007004	Agricultural Soil	ITRMGGLGIFADRSNIRIVRREGTKITEFIVDYDAIINGDLKQDLLLRPGDRIIIP*
Ga0075435_1013718612	3300007076	Populus Rhizosphere	GVFADRSNIRVVRREGSKVTEYTVDYDAIIKGDLRQDVLLRPGDRIIVP*
Ga0099829_116835481	3300009038	Vadose Zone Soil	NRDKIRVVRRAGEKVTEYIVDYDAILKGDLKQDILLRPGDRIIVQ*
Ga0099827_110236511	3300009090	Vadose Zone Soil	LTAFADRDKIRVVRRAEEQVTEYIVDYDAILKGDLKQDILLRPGDRVIVR*
Ga0111539_103869911	3300009094	Populus Rhizosphere	GIFADRSNIRVVRREGSRVTEYTVDYDAIIKGDLKQDVLLRPGDRVIVP*
Ga0111539_120468472	3300009094	Populus Rhizosphere	QGDKVTEFVVDYDAILKGDLKQDILLKPGDRIVVP*
Ga0075423_100219061	3300009162	Populus Rhizosphere	REGPKITEYIVDYDAIIKGDLKQDLLLRPGDRIIIP*
Ga0075423_121127802	3300009162	Populus Rhizosphere	MHNADQRKVIELVVDYDAILKGDLKQDILLRPGDRILVP*
Ga0114945_105807482	3300009444	Thermal Springs	ASRSNIRVVRREGEKVKEFTVDYDAIVAGDLKQDIPLKPGDRVIVP*
Ga0105237_112762111	3300009545	Corn Rhizosphere	LLTRAGGLGIFADRSNIRVVRRDGSRVTEYTVDYDAIIKGDLKQDVLLRPGDRVIVR*
Ga0105259_10736602	3300009597	Soil	VFADRSNIRVLRRDGVKITEYIADYDGIIKGDLKQDILLRPGDRIIVP*
Ga0126384_110453901	3300010046	Tropical Forest Soil	EGKVTEFIVDYDAIVKGDLKQDVILRPGDRIIVP*
Ga0126384_111091321	3300010046	Tropical Forest Soil	GVNVTEYVVDYEAISKGDLKQDIVLRPGDRIIVE*
Ga0126382_106625512	3300010047	Tropical Forest Soil	FADRSNIRVVRREGDKVTEYIADYDGIIKGDLKQDILLRPGDRIIVP*
Ga0134122_124897452	3300010400	Terrestrial Soil	GIFADRSNVRVVRRDGDRITEYIVDYDAILKGDLRQDILLRPGDRIIVP*
Ga0134121_119639681	3300010401	Terrestrial Soil	LLQLLTRAGGLGVFAARSNIRVVPRDGSRVTDYTVDYDAIIKGDLKQDVLLRPGDRVIVR
Ga0137393_112053391	3300011271	Vadose Zone Soil	IRVVRRDGDKITEYIVDYDAIIKGDLKQDILLRPGDRIIVP*
Ga0137423_11669932	3300011430	Soil	RDAIKVMRRDGIKLIEYIVDYDAILAGDLRQDIVLRPGDRIIVP*
Ga0137321_11125412	3300012175	Soil	SVFADRSNIRVLRRDGVKITEYIADYDGIIKGDLKQDILLRPGDRIIVP*
Ga0137360_118649452	3300012361	Vadose Zone Soil	KNIRVVRRDGDKITEYIVDYDAIIKGDLKQDILLRPGDRIIVP*
Ga0157288_102751352	3300012901	Soil	GIRVTEYTVDYDAIIKGDLKQDVLLRPGDRVIVP*
Ga0126375_105642181	3300012948	Tropical Forest Soil	SVFADRSNIRIVRRDGEKITEYIADYDAIIKGDLKQDILLRPGDRIIVP*
Ga0164300_100318311	3300012951	Soil	RAGGLGIFADRSNIRVVRRDGSRVTEYTVDYDAIIKGDLKQDVLLRPGDRVIVR*
Ga0164299_109096572	3300012958	Soil	RISRRQGEKITEFVVDYDAILEGDLKQDILLKPGDRIVVP*
Ga0164301_102499791	3300012960	Soil	AGGLGVFADRSNIRVVRRDGSRVTEYTVDYDAIIKGDLKQDVLLRPGDRVIVR*
Ga0126369_102357433	3300012971	Tropical Forest Soil	PFADRSNIRVVRRNGDKVIEYIADYDGIIKGDLKQDILLRPGDRIIVP*
Ga0164308_101812492	3300012985	Soil	GAAGGLGVFADRSNIRVVRRDGSRVTEYTVDYDAIIKGDLKQDVLLRPGDRVIVR*
Ga0164306_115416092	3300012988	Soil	TRAGGLGVFADRSNIRVVRRDGSRVTEYTVDYDAIIKGDLKQDVLLRPGDRVIVR*
Ga0157380_132893741	3300014326	Switchgrass Rhizosphere	REGTKITEFIVDYDAIIKGDLKQDLLLRPGDRIIIP*
Ga0157379_120618821	3300014968	Switchgrass Rhizosphere	RAGGLGVFADRSNIRVVRRDGSRVTEYTVDYDAIIKGDLKQDVLLRPGDRVIVP*
Ga0137412_106809232	3300015242	Vadose Zone Soil	LTRSGGLGVFADRSNIRVVRRDGSKVTEYVVDYDAIIKGDLKQDVLLRPGDRIIVP*
Ga0132257_1009575491	3300015373	Arabidopsis Rhizosphere	SNIRVVRREASRVTEYTVDYDAIIKGDLKQDVLLRPGDRVIVP*
Ga0132255_1008015882	3300015374	Arabidopsis Rhizosphere	GSKVTEYVVDYDAIIKGDLKQDLLLRPGDRIIVP*
Ga0132255_1013861882	3300015374	Arabidopsis Rhizosphere	VVRRDGSKVTEYVVDYDAIIKGDLKQDVLLRPGDRIIVP*
Ga0182035_106739202	3300016341	Soil	FADRSNIRVVRREGNKETEYIADYDAMVKGDLKQDILLRPGDRIIVP
Ga0163161_107262472	3300017792	Switchgrass Rhizosphere	DRRNIRISRRQGEKITEFVVDYDAILEGDLKQDILLKPGDRIVVP
Ga0184608_104077211	3300018028	Groundwater Sediment	IFADRADIRVVRREGDKIKEYIVDYDAILKGDLKQAILVRPGDRIIVP
Ga0187787_100577743	3300018029	Tropical Peatland	DRSNIRLVRREGAKITEYVVDYDAIIKGDLKQDLLLRPGDRIIIP
Ga0187787_104322481	3300018029	Tropical Peatland	LITRMGGLGIFADRSNIRLVRREGTKITEYLVDYDAIIKGDLKQDLLLRPGDRIIIP
Ga0184634_101069742	3300018031	Groundwater Sediment	TIFADRRNIKLVRRDGNTVTEYIVDYDAIVQGDLRQDILLRPGDRIIVP
Ga0184637_100303843	3300018063	Groundwater Sediment	QLLTRAGGLTIFAQRRDIRTVRRAGEKVTEFISDYDAIVAGDLKQDILLRPGDRIIVP
Ga0184618_102163431	3300018071	Groundwater Sediment	RSNLRVVRREGDKLTEFIVDYDAIIKGDLKQDILLRPADRIIVP
Ga0184612_105211292	3300018078	Groundwater Sediment	RVVRRLGEKVTEYIVDYDAILEGDLKQDILLKPGDRVIVQ
Ga0184625_104439811	3300018081	Groundwater Sediment	IFADRSNIRVVRRDGDKVTEYIADYDGIIKGDLKQDILLRPGDRIIVP
Ga0184639_102745151	3300018082	Groundwater Sediment	IRIVRRDGVKITEYVVDYDAIIKGDLKQDLLLRPGDRVIIP
Ga0184629_105696901	3300018084	Groundwater Sediment	TGEKITEYVSDYDAIIDGDLKQDIILRPGDRIIVK
Ga0190265_102423431	3300018422	Soil	VRREGAKVTEYVVDYDAIVKGDLKQDILLRPGDRIIVP
Ga0193726_13637652	3300020021	Soil	FAERSNLRVVRREGDKLTEFIVDYDAIIKGDLKQDILLRPADRIIVP
Ga0212128_107237402	3300022563	Thermal Springs	ASRSNIRVVRREGEKVKEFTVDYDAIVAGDLKQDIPLKPGDRVIVP
Ga0209521_106012111	3300025164	Soil	TRAGGLTIFAQRRDIKTVRRAGDKVTEYVSDYDAIVAGDLKQDIILRPGDRIIVP
Ga0209108_101954382	3300025165	Soil	TIFAQRRDIKTVRRTGDKVTEYVSDYDAIVAGDLKQDIILRPGDRIIVP
Ga0209642_100063357	3300025167	Soil	TVRRTGDKVTEYVSDYDAIVAGDLKQDIILRPGDRIIVP
Ga0207673_10516752	3300025290	Corn, Switchgrass And Miscanthus Rhizosphere	VFADRSNIRVVRRDGSRVTEYTVDYDAIIKGDLKQDVLLRPGDRVIVR
Ga0209519_101097332	3300025318	Soil	IKTVRRAGDKVTEYVSDYDAIVAGDLKQDIILRPGDRIIVP
Ga0209641_107105631	3300025322	Soil	AQRRDIKTVRRAGDKVTEYVSDYDAIVAGDLKQDIILRPGDRVIVP
Ga0207642_110861122	3300025899	Miscanthus Rhizosphere	LSPFADRRNIRISRRQGEKITEFVVDYDAILEGDLKQDILLKPGDRIVVP
Ga0207670_116638441	3300025936	Switchgrass Rhizosphere	ADRSNIRIVRREGTKITEFIVDYDAIIKGDLKQDLLLRPGDRIIIP
Ga0207658_109070691	3300025986	Switchgrass Rhizosphere	EGNRVTEYTVDYDAIIKGDLKQDVLLRPGDRVIVP
Ga0208685_10560881	3300027513	Soil	RREGTKITEFIVDYDAIINGDLKQDLLLRPGDRIIIP
Ga0209798_103455511	3300027843	Wetland Sediment	FADRSNIRVVRREKDKITEYVIDYDAILKGDLRQDILLRPGDRIIVPEATLFFGK
Ga0209798_105282962	3300027843	Wetland Sediment	LNGNESLLQLITRAGGLTIFADRRNIKTVRRNGDRVMEFLSDYEAILTGDFKQDIILKPGDRIIVP
Ga0209180_102044892	3300027846	Vadose Zone Soil	NRDKIRVVRRAGEKVTEYIVDYDAILKGDLKQDILLRPGDRIIVQ
Ga0209701_106936691	3300027862	Vadose Zone Soil	MTIFADRHNIKIVRRQGDKVTEYIVDYDAIVRGDLKQDILLRPGDRIIVQ
Ga0207428_112057482	3300027907	Populus Rhizosphere	EGSRVTEYTVDYDAIIKGDLKQDVLLRPGDRVIVP
Ga0209583_106304982	3300027910	Watersheds	LTPFADRRNIRVSRRQGDKVVEFVVDYNAILGGDLKQDILLRPGDRIVVP
Ga0268386_110104651	3300030619	Soil	PLLGNDSLLQLITRAGGLTIFADRRDIRVLRRARNKVIEYIADYEAIIDGDLKQDIILRPGDRIIVQ
Ga0310813_103542681	3300031716	Soil	RREGSKITEYTVDYDAIIKGDLKQDLLLRPGDRIIIP
Ga0307477_107512431	3300031753	Hardwood Forest Soil	TILQLLSRMGGLGIFDDRKNIRVVRRDGDKITEYIVDYDAIIKGDLKQDILLRPGDRIIV
Ga0310900_111999552	3300031908	Soil	FADRSNIRVVRRDGSRVTEYTVDYDAIIKGDLKQDVLLRPGDRVIVR
Ga0214473_104841031	3300031949	Soil	IRRVGEKVTEYIADYEAIIDGDLKQDIILRPGDRIIVK
Ga0315912_103537342	3300032157	Soil	GAYPMLGNDTLLQLVTRAGGLTIFAERRDIRVMRRLGNKVTEYIADYDAIVAGDLKQDIILRPGDRIIVP
Ga0307471_1011985591	3300032180	Hardwood Forest Soil	GLGIFDDRKNIRVVRRDGDKITEYIVDYDAIIKGDLKQDILLRPGDRIIVP
Ga0307471_1016149951	3300032180	Hardwood Forest Soil	LITRAGGLNLFADYHNIKVVRRNGADVTEYTVDFEAIMKGDLKQDILLRPGDRILVE
Ga0335081_103981041	3300032892	Soil	FDDRKNIRVVRRDGDKITEYIVDYDAIINGDLKQDILLRPGDRIIVP
Ga0316617_1017217642	3300033557	Soil	RMGNKVTEYIADYDAIVAGDLKQDIILRPGDRIIVP
Ga0364930_0284123_3_125	3300033814	Sediment	KTVRRAGDKVTEYVSDYDAIVAGDLKQDIILRPGDRIIVP

Hidden Markov Model


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