NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F097585

Metagenome / Metatranscriptome Family F097585

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F097585
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 62 residues
Representative Sequence MSEIHYIEENLPHKVSEVICINCKHRWIAVRPCANKLKDLECPQCGKQGYVIETGEIIDNEEPF
Number of Associated Samples 44
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 48.48 %
% of genes near scaffold ends (potentially truncated) 8.65 %
% of genes from short scaffolds (< 2000 bps) 59.62 %
Associated GOLD sequencing projects 40
AlphaFold2 3D model prediction Yes
3D model pTM-score0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (40.385 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen
(62.500 % of family members)
Environment Ontology (ENVO) Unclassified
(95.192 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal proximal gut
(60.577 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 3.26%    β-sheet: 21.74%    Coil/Unstructured: 75.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.62
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF06356DUF1064 3.85
PF08299Bac_DnaA_C 2.88
PF14902DUF4494 2.88
PF05866RusA 1.92
PF05050Methyltransf_21 1.92
PF00436SSB 1.92
PF03837RecT 1.92
PF02511Thy1 0.96
PF13306LRR_5 0.96
PF13392HNH_3 0.96
PF02768DNA_pol3_beta_3 0.96
PF05203Hom_end_hint 0.96
PF12728HTH_17 0.96
PF11750DUF3307 0.96
PF01381HTH_3 0.96
PF14311DUF4379 0.96
PF13175AAA_15 0.96
PF13394Fer4_14 0.96
PF04448DUF551 0.96
PF13673Acetyltransf_10 0.96
PF00692dUTPase 0.96
PF08406CbbQ_C 0.96
PF13508Acetyltransf_7 0.96
PF12957DUF3846 0.96
PF01176eIF-1a 0.96
PF11753DUF3310 0.96
PF05133Phage_prot_Gp6 0.96
PF03592Terminase_2 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG0593Chromosomal replication initiation ATPase DnaAReplication, recombination and repair [L] 2.88
COG0629Single-stranded DNA-binding proteinReplication, recombination and repair [L] 1.92
COG2965Primosomal replication protein NReplication, recombination and repair [L] 1.92
COG3723Recombinational DNA repair protein RecTReplication, recombination and repair [L] 1.92
COG4570Holliday junction resolvase RusA (prophage-encoded endonuclease)Replication, recombination and repair [L] 1.92
COG0361Translation initiation factor IF-1Translation, ribosomal structure and biogenesis [J] 0.96
COG0592DNA polymerase III sliding clamp (beta) subunit, PCNA homologReplication, recombination and repair [L] 0.96
COG0714MoxR-like ATPaseGeneral function prediction only [R] 0.96
COG0717dCTP deaminaseNucleotide transport and metabolism [F] 0.96
COG0756dUTP pyrophosphatase (dUTPase)Defense mechanisms [V] 0.96
COG1351Thymidylate synthase ThyX, FAD-dependent familyNucleotide transport and metabolism [F] 0.96
COG3728Phage terminase, small subunitMobilome: prophages, transposons [X] 0.96


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms60.58 %
UnclassifiedrootN/A39.42 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2084038000|BRPC2_GFP31SK02IUHBDAll Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium508Open in IMG/M
3300002597|DRAFT_10249161Not Available2067Open in IMG/M
3300011979|Ga0120379_1020253All Organisms → Viruses → Predicted Viral1353Open in IMG/M
3300011989|Ga0120380_1003387Not Available9504Open in IMG/M
3300012007|Ga0120382_1091766All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium831Open in IMG/M
3300012016|Ga0120387_1018610All Organisms → Viruses → Predicted Viral2595Open in IMG/M
3300012016|Ga0120387_1073772All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1204Open in IMG/M
3300013099|Ga0164315_10019847All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium5319Open in IMG/M
3300014057|Ga0120384_1254814All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium585Open in IMG/M
3300021254|Ga0223824_10132702All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp. tc2-282261Open in IMG/M
3300021254|Ga0223824_10207329All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella1756Open in IMG/M
3300021254|Ga0223824_10366534All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.1233Open in IMG/M
3300021254|Ga0223824_10761483Not Available744Open in IMG/M
3300021255|Ga0223825_10115340All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium693Open in IMG/M
3300021255|Ga0223825_10336840All Organisms → Viruses → Predicted Viral3198Open in IMG/M
3300021255|Ga0223825_11690120Not Available736Open in IMG/M
3300021255|Ga0223825_11794537Not Available932Open in IMG/M
3300021256|Ga0223826_10901572Not Available628Open in IMG/M
3300021387|Ga0223845_10232468Not Available1448Open in IMG/M
3300021387|Ga0223845_10232469Not Available698Open in IMG/M
3300021387|Ga0223845_10488154Not Available5618Open in IMG/M
3300021387|Ga0223845_11217749Not Available20558Open in IMG/M
3300021387|Ga0223845_11528967Not Available6065Open in IMG/M
3300021387|Ga0223845_12283789All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium552Open in IMG/M
3300021387|Ga0223845_12979712Not Available6385Open in IMG/M
3300021399|Ga0224415_10607992All Organisms → cellular organisms → Bacteria887Open in IMG/M
3300021399|Ga0224415_10991754Not Available617Open in IMG/M
3300021400|Ga0224422_10770825Not Available801Open in IMG/M
3300021400|Ga0224422_12483176Not Available9049Open in IMG/M
3300021426|Ga0224482_10825229Not Available681Open in IMG/M
3300021431|Ga0224423_10000309All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes84478Open in IMG/M
3300021540|Ga0214517_102360All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Herelleviridae → unclassified Herelleviridae → Herelleviridae sp.2855Open in IMG/M
3300024337|Ga0255060_10004009All Organisms → cellular organisms → Bacteria4715Open in IMG/M
3300024342|Ga0255061_10359812All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.758Open in IMG/M
3300024486|Ga0255059_10026958All Organisms → Viruses → Predicted Viral2260Open in IMG/M
3300026525|Ga0256870_1252664All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes652Open in IMG/M
3300026525|Ga0256870_1352483All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium518Open in IMG/M
3300026526|Ga0256869_1170669All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium946Open in IMG/M
3300027896|Ga0209777_10519230Not Available875Open in IMG/M
3300028591|Ga0247611_10138372All Organisms → Viruses → Predicted Viral2550Open in IMG/M
3300028591|Ga0247611_10388300Not Available1504Open in IMG/M
3300028591|Ga0247611_10498185All Organisms → Viruses → Predicted Viral1309Open in IMG/M
3300028591|Ga0247611_10627976All Organisms → Viruses → Predicted Viral1143Open in IMG/M
3300028591|Ga0247611_12206959All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium502Open in IMG/M
3300028805|Ga0247608_10001830Not Available28201Open in IMG/M
3300028805|Ga0247608_10005382Not Available13856Open in IMG/M
3300028805|Ga0247608_10161502All Organisms → Viruses → Predicted Viral2170Open in IMG/M
3300028805|Ga0247608_11191930Not Available688Open in IMG/M
3300028832|Ga0265298_11508165All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium559Open in IMG/M
3300028833|Ga0247610_10000490Not Available55371Open in IMG/M
3300028833|Ga0247610_10013852All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes8038Open in IMG/M
3300028833|Ga0247610_10166221Not Available2252Open in IMG/M
3300028833|Ga0247610_11184940All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium758Open in IMG/M
3300028886|Ga0256407_10000142All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales178885Open in IMG/M
3300028888|Ga0247609_10003035Not Available17226Open in IMG/M
3300029305|Ga0307249_11341440All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. 26_221201Open in IMG/M
3300031760|Ga0326513_10069179All Organisms → Viruses → Predicted Viral2805Open in IMG/M
3300031760|Ga0326513_10136507All Organisms → Viruses → Predicted Viral2065Open in IMG/M
3300031760|Ga0326513_10156474All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp. BP1-1451938Open in IMG/M
3300031760|Ga0326513_10669726All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium933Open in IMG/M
3300031760|Ga0326513_10695215Not Available914Open in IMG/M
3300031760|Ga0326513_10761060All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes868Open in IMG/M
3300031760|Ga0326513_10969626Not Available753Open in IMG/M
3300031760|Ga0326513_11236371All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium650Open in IMG/M
3300031760|Ga0326513_11631571Not Available545Open in IMG/M
3300031853|Ga0326514_10003462Not Available10044Open in IMG/M
3300031853|Ga0326514_10112089All Organisms → Viruses → Predicted Viral2208Open in IMG/M
3300031853|Ga0326514_10116565All Organisms → Viruses → Predicted Viral2170Open in IMG/M
3300031853|Ga0326514_10138663All Organisms → Viruses → Predicted Viral2010Open in IMG/M
3300031853|Ga0326514_10796353All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium830Open in IMG/M
3300031853|Ga0326514_11498981All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium560Open in IMG/M
3300031853|Ga0326514_11638850Not Available528Open in IMG/M
3300031867|Ga0326511_10066639All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales3156Open in IMG/M
3300031867|Ga0326511_10513572All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1193Open in IMG/M
3300031867|Ga0326511_11084132All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales776Open in IMG/M
3300031867|Ga0326511_11169482All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes740Open in IMG/M
3300031867|Ga0326511_11198526All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium729Open in IMG/M
3300031867|Ga0326511_11322837Not Available685Open in IMG/M
3300031867|Ga0326511_11364159All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium671Open in IMG/M
3300031993|Ga0310696_11173167All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium795Open in IMG/M
3300031994|Ga0310691_11440273All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium688Open in IMG/M
3300031998|Ga0310786_10090567All Organisms → Viruses → Predicted Viral3539Open in IMG/M
3300031998|Ga0310786_10371252All Organisms → Viruses → Predicted Viral1630Open in IMG/M
3300031998|Ga0310786_11072333Not Available875Open in IMG/M
3300032007|Ga0310695_10008396Not Available15993Open in IMG/M
3300032007|Ga0310695_10170988All Organisms → cellular organisms → Bacteria1988Open in IMG/M
3300032030|Ga0310697_11854281All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Okeania → unclassified Okeania → Okeania sp. SIO3H1546Open in IMG/M
3300032038|Ga0326512_10008795Not Available7276Open in IMG/M
3300032038|Ga0326512_10057946All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp. tc2-282967Open in IMG/M
3300032038|Ga0326512_10105539All Organisms → Viruses → Predicted Viral2221Open in IMG/M
3300032038|Ga0326512_10244594All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1443Open in IMG/M
3300032038|Ga0326512_10399224All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1098Open in IMG/M
3300032038|Ga0326512_10466769Not Available1003Open in IMG/M
3300032038|Ga0326512_10618343Not Available846Open in IMG/M
3300032038|Ga0326512_10847682All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium691Open in IMG/M
3300032038|Ga0326512_11213887All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes543Open in IMG/M
3300032038|Ga0326512_11283617Not Available523Open in IMG/M
3300033463|Ga0310690_10063714All Organisms → Viruses → Predicted Viral4240Open in IMG/M
3300033463|Ga0310690_12535569All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium531Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
RumenHost-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen62.50%
Cattle And Sheep RumenHost-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen22.12%
Sheep RumenHost-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen5.77%
Goat FecesHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces1.92%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.92%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment0.96%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment0.96%
Bovine RumenHost-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen0.96%
Camel RumenHost-Associated → Mammals → Digestive System → Foregut → Rumen → Camel Rumen0.96%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.96%
Sugarcane Root And Bulk SoilHost-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil0.96%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2084038000Bovine rumen viral communities from University of Illinois Dairy Farm in Urbana, IL, Cow rumen 7664Host-AssociatedOpen in IMG/M
3300002597Camel rumen microbial communities from Jandagh-Isfahan, Iran - Sample 1Host-AssociatedOpen in IMG/M
3300003320Sugarcane root Sample H2Host-AssociatedOpen in IMG/M
3300005834Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2Host-AssociatedOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300011979Sheep rumen microbial communities from Wyoming, USA - O_aries_Con_1396Host-AssociatedOpen in IMG/M
3300011989Sheep rumen microbial communities from Wyoming, USA - O_aries_Con_7429Host-AssociatedOpen in IMG/M
3300012007Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1009Host-AssociatedOpen in IMG/M
3300012016Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1397Host-AssociatedOpen in IMG/M
3300013099Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay6, Core 4569-2, 0-3 cmEnvironmentalOpen in IMG/M
3300014057Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1208Host-AssociatedOpen in IMG/M
3300021254Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assemblyHost-AssociatedOpen in IMG/M
3300021255Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assemblyHost-AssociatedOpen in IMG/M
3300021256Sheep rumen microbial communities from New Zealand - Tag 1283 SPADES assemblyHost-AssociatedOpen in IMG/M
3300021387Sheep rumen microbial communities from New Zealand - Tag 1283 SPADES assemblyHost-AssociatedOpen in IMG/M
3300021399Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assemblyHost-AssociatedOpen in IMG/M
3300021400Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assemblyHost-AssociatedOpen in IMG/M
3300021426Sheep rumen microbial communities from New Zealand - Tag 1435 SPADES assemblyHost-AssociatedOpen in IMG/M
3300021431Sheep rumen microbial communities from New Zealand - Tag 1435 SPADES assemblyHost-AssociatedOpen in IMG/M
3300021540Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen4, Rep 3, Penicillin and StreptomycinHost-AssociatedOpen in IMG/M
3300024337Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 RNA GHGlow gp2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300024342Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 RNA GHGhigh gp2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300024486Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 RNA GHGlow gp2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300025321Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026525Metatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_06 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300026526Metatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_05 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300027896Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)EnvironmentalOpen in IMG/M
3300028591Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 DNA GHGhigh gp2Host-AssociatedOpen in IMG/M
3300028805Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 DNA GHGlow gp2Host-AssociatedOpen in IMG/M
3300028832Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_01Host-AssociatedOpen in IMG/M
3300028833Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2Host-AssociatedOpen in IMG/M
3300028886Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_04Host-AssociatedOpen in IMG/M
3300028888Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2Host-AssociatedOpen in IMG/M
3300029305Goal Fecal Pellet Co-assembly of all three pellet samples and three diluted pellet samples.Host-AssociatedOpen in IMG/M
3300031760Bovine rumen microbial communities from UC Davis, California, United States - 2_2465_0518Host-AssociatedOpen in IMG/M
3300031853Bovine rumen microbial communities from UC Davis, California, United States - 3_2548_0518Host-AssociatedOpen in IMG/M
3300031867Bovine rumen microbial communities from UC Davis, California, United States - 0_2496_0518Host-AssociatedOpen in IMG/M
3300031993Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_02 (v2)Host-AssociatedOpen in IMG/M
3300031994Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 DNA GHGlow gp2 (v2)Host-AssociatedOpen in IMG/M
3300031998Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_03 (v2)Host-AssociatedOpen in IMG/M
3300032007Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_04 (v2)Host-AssociatedOpen in IMG/M
3300032030Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2 (v2)Host-AssociatedOpen in IMG/M
3300032038Bovine rumen microbial communities from UC Davis, California, United States - 1_2617_0518Host-AssociatedOpen in IMG/M
3300033463Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04 (v2)Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
BRPC2_024359502084038000Bovine RumenMAKIINIEENTPHKVSEVICIDCKHRWIAVRPTNTLLKDLECPQCWLQGYVIETGEQLKD
DRAFT_1024916163300002597Camel RumenMSEIHYIEENLPHKTSEVVCLGCLKRWIAVRPMATLLKDLECPQCGKQGYVIETGEIIDTEDYA*
rootH2_1016836913300003320Sugarcane Root And Bulk SoilMSQVIDINANEPHKVSEVICVHCGWRWIAVRHVKTRLKDLECPDCRNRGKVIETGEILELE*
Ga0068851_1014046923300005834Corn RhizosphereMSDTIDINANQPHRVSEVICVHCGWRWIAVRPAETRLKDLECPDCTNQGKVIETGEVLPEEE*
Ga0097621_100000102123300006237Miscanthus RhizosphereMSAKIMDIQAHDQHRVSEVICVHCGKRWISVRPVECLLKYLECPECTNQGYVIETGCETLKDD*
Ga0120379_102025343300011979Sheep RumenMSEIHYIEENLPHRVSEVICINCKHRWIAVRPCKTKLKDLECPKCGKQGYVIETGEIIDNEEPF*
Ga0120380_100338723300011989Sheep RumenMSEIHYIEENLPHKVSEVICVGCGKRWIAVRPMSTLLKDLECPQCGKQGYVIETGEIIDNEEPF*
Ga0120382_109176613300012007Sheep RumenMAEIHYIEENLPHRVSVVICLKCLKRFVSVRPETTLLKDLECPQCGKQGYVIETGEIIDNEE*
Ga0120387_101861033300012016Sheep RumenMEISIEENMPHKVSEVICIDCKYRWLAVRPTCTLLKDLECPRCGLQGYVIETGEIIKKGGEE*
Ga0120387_107377233300012016Sheep RumenMSKAKVINIEENLPHKASEVICINCKYRWIAVRPEETLLKDLECPKCQTKGFVIKTGEVINYE*
Ga0164315_1001984773300013099Marine SedimentMNEKIINIEENLPHKVSMVICLKCLNRWISVRPEKTKLIDLECSECGQGFAIETGEIIDDKI*
Ga0120384_125481423300014057Sheep RumenMSEIHYIEENLPHKVSEVICINCKHRWIAVRPCKNKLKDLECAGCHKQGYVIETGELFDFGEESF*
Ga0223824_1013270233300021254Cattle And Sheep RumenMEISIDENLPHKVSEVIEVICINCKYRWIAVRPTDTLLKDLECPQCGQQGYVIETGEIINENE
Ga0223824_1020732923300021254Cattle And Sheep RumenMDIPDVKIVDINENTPHRVSEVICIECKHRWIAVRPTDTLLKELECPQCGIQGYVIETGEVINENKQL
Ga0223824_1036653443300021254Cattle And Sheep RumenMDNSDTKIIDINEDALHRVSEVICVKCTYRWLAVRPITTLLKDLECPWCGKQGFVIETGEIINENT
Ga0223824_1076148333300021254Cattle And Sheep RumenMSEVVDINANQPHKVSEVICINCKHRWVAVRPVVTQLVKLECPNCNEQGYVIETGEIIDE
Ga0223825_1011534033300021255Cattle And Sheep RumenMDNSDTKIIDINKDVLHRVSEVICVKCTYRWLAVRPITTLLKDLECPWCGKQGFVIETGEIINENT
Ga0223825_1033684063300021255Cattle And Sheep RumenMVNIVDINENTPHKVSEVICIYCKYRWLAVRPLDTLLKDLECPWCGMQGYVIETGEEINKEEEE
Ga0223825_1169012023300021255Cattle And Sheep RumenMEISIEENMPHKVSEVMCVNCKHRWIAVRPTNTLLKNLECPQCWLQGYVIETGEVINNNE
Ga0223825_1179453723300021255Cattle And Sheep RumenMMSEIHYIEENLPHKTSEVVCLGCLKRWIAVRPCVCKLKDLQCPQCGKQGYVIETGEIIDTEDYA
Ga0223826_1090157233300021256Cattle And Sheep RumenMDIPDVKIVDINENTPHRVSEVICIECKHRWIAVRPTDTLLKELECPQCGIQGYVIETGEIINENKQL
Ga0223845_1023246823300021387Cattle And Sheep RumenMSEVVDINVNQPHKVSEVICVNCKHRWVAVRPVVTKLVKLECPNCNEQGYVIETGEIIDE
Ga0223845_1023246923300021387Cattle And Sheep RumenMSEVVDINANQPHKVSEVICINCKHRWVAVRPVVTQLVKLECPNCNKQGYVIETGEIIDE
Ga0223845_1048815443300021387Cattle And Sheep RumenMAEIHNIEENMPHKVSEVICINCKHRWIAARPCITQLKDLECPNCHEQGYVIETGEIMDADFD
Ga0223845_11217749243300021387Cattle And Sheep RumenMSNIVDINENIPHKVSEVVCLSCLKRWLAVRPIGCKLRDIECPQCHKQGYVIETGEEYE
Ga0223845_1152896723300021387Cattle And Sheep RumenMDNSDAKIVDINENTPHRVSEVICVKCTYRWLAVRPITTLLKDLECPWCGKQGFVIETGEIINENT
Ga0223845_1228378923300021387Cattle And Sheep RumenDVLHRVSEVICVKCTYRWLAVRPITTLLKDLECPWCGKQGFVIETGEIINENT
Ga0223845_1297971243300021387Cattle And Sheep RumenMSEIHHIEENLPHRVSVVICLKCLKRFVSVRPATTLLKELECPQCHKQGYVIETGEIIDNEEPF
Ga0224415_10003129163300021399Cattle And Sheep RumenMAKCKVIDIARNEPYKVSEVICVKCGKRWMAVRPETTLLKHLECPQCGNEGFVIETGEEIDG
Ga0224415_1060799233300021399Cattle And Sheep RumenMNEVVDINVNQPHKVSEVICINCKHRWVAVRPVVTQLVKLECPNCNEQGYVIETGEIIDE
Ga0224415_1099175423300021399Cattle And Sheep RumenMGTVVSMEENMPHVVSEVICVNCKHRWIDVRPEKLWLKQLECPNCKEVGYVIETGQIIDD
Ga0224422_1077082533300021400Cattle And Sheep RumenMKMAEIHYIEENQPHKVSEVICINCKHRWIAVRPCANKLKDLECACCHQQGYVIETGELFDFGEESF
Ga0224422_1248317643300021400Cattle And Sheep RumenMSEIHYIEENLPHRVSEVICINCKHRWIAVRPCKNKLKDLECAQCGKQGYVIETGEIIDTEDYA
Ga0224482_1082522923300021426Cattle And Sheep RumenNLPHKTSEVVCLGCLKRWIAVRPMATLLKELECPQCGKQGYVIETGEIIDTEESF
Ga0224423_10000309813300021431Cattle And Sheep RumenMTKVIDIAENTPHKVSVVICLGCLKRFVSVRPVKTLLKDLECPQCHKRGFVIETGETIDEET
Ga0214517_10236033300021540Goat FecesMEISIDENKPHKVSEVICVKCLHRWIAVRPIECRLKDLECAGCGEQGYVIETGEVIDG
Ga0255060_1000400983300024337RumenMVTSIEENLPHKVSEVICIDCKYRWVAVRPTATLLKELECPQCRQQGYVIETGEIIND
Ga0255061_1035981233300024342RumenMDNSDTKIIDINEDALHRVSEVICVKCTYRWPAVRPITTLLKDLECPWCGKQGFVIETGEIINENT
Ga0255059_1002695823300024486RumenMSEIHYIEENLPHKTSEVVCLGCLKRWIAVRPMATLLKDLECPRCHKQGYVIETGEIIDTENYA
Ga0207656_1041478223300025321Corn RhizosphereMSDTIDINANQPHRVSEVICVHCGWRWIAVRPAETRLKDLECPDCTNQGKVIETGEVLPEEE
Ga0256870_125266413300026525RumenMSEIHYIEENLPHKTSEVVCLGCLKRWIAVRPMATLLKELECQHCGKQGYVIETGEIIDVNKEPF
Ga0256870_135248313300026525RumenMVFNFNRRLAMSTAEVIDIEENLPHKVSEVICINCRNRWIAVRPVKTLLKDLECPKCQTKGFIIETGEIIDYE
Ga0256869_117066923300026526RumenMIMVNIVDINENTPHKVNEVICINCKYRWLAVRPIDTLLKDLECPYCSLQGYVIETGEEINKVEEE
Ga0209777_1051923023300027896Freshwater Lake SedimentNVSDINKNEPHEASEVICINCKKRWVALRPQLTLLKDLQCPQCLQQGGVIETGEIIYELADE
Ga0247611_1013837233300028591RumenMSEIHYIEENLPHKVSEVICINCKHRWIAVRPCANKLKDLECPQCGKQGYVIETGEIIDNEEPF
Ga0247611_1038830033300028591RumenMFKWNSMKKMETTQIINIEEYQLHKVSEVICINCKHRWLAVRPASTWLKDLQCPECKQQGYVIETGQIIDRE
Ga0247611_1049818523300028591RumenMSEIHYIEENLPHKVSEVICINCKHRWVAVRPCVCKLKELECPECNKQGYVIETGEIFDFNEESF
Ga0247611_1062797623300028591RumenMVQEIDINENKPNKVSEVICVACHKRWIAVRLTKSRLKDLECPCCHKQGYVIETGEVIFDENE
Ga0247611_1220695923300028591RumenMDNPDVKIIDINENDLHRVSEVICVKCAYRWLAVRPVTTFLKDLECPWCGKQGFVIETGEIINENK
Ga0247608_1000183043300028805RumenMEISIDENLPHKVNEVMCINCKYRWIAVRPTDTLLKDLECPQCGQQGYVIETGEIINENK
Ga0247608_10005382223300028805RumenMKDNPEIHSIDENTPHKVSEVICVQCAYRWLAVRPVVTRLKDLECPWCGKQGFVIETGEVIKE
Ga0247608_1016150223300028805RumenMSEIRYIESNLPHKTSEVVCLGCLKRWIAVRPMATLLKDLECPQCGKQGYVIETGEIIDN
Ga0247608_1119193023300028805RumenMSEVVYIGKNLEHKLSEVICTNCKHRWYAVRPKTTLLKELECPQCGKQGYVIETGEILEG
Ga0265298_1150816523300028832RumenMDSSDAKIVDINENTPHRVSEVICVKCAYRWLAVRPVTTLLKDLECPWCGKQGFVIETGEVINKNE
Ga0247610_10000490313300028833RumenMNNTNTIDINELIPHKASEVVCLGCLKRWISVRPMTTLLKDLECPQCRQQGYVIETGETIGNIQE
Ga0247610_10013852153300028833RumenMDIPDVKIVDINENTPHRVSEVICVKCAYRWLAVRPVTTLLKDLECPWCGKQGFVIETGEIINENK
Ga0247610_1016622133300028833RumenMIRDINENQPHTLSEVICINCKHRWLAVRPSDMWLKDIKCPYCNKKGYVINTGQEID
Ga0247610_1118494033300028833RumenMSEIHYIEENLPHRVSEVICINCKYRWIAVRPCKNKLKDLECAGCHKQGYVIETGEEYNEEGL
Ga0256407_100001422543300028886RumenMIKDINENQPHKVSEVICIDCKYRWLAVRPTKTLLKDLECPRCGKQGYVIETGEIVEA
Ga0247609_1000303583300028888RumenMDEKVKYIEENIPHKVSEVICINCKRRWISVRPECTRLKQLECPGCGETGYVIETGEEINNDTE
Ga0307249_1134144023300029305Goat FecesMSNIIQLETYLPHKTSEVICVKCYKRWIATRPVNVLLKELECPNCEKIGYVIETGEIIDEEENV
Ga0326513_1006917973300031760RumenMSEIHYIEENLPHRVSEVICINCKHRWIAVRPCKNKLKDLECAGCHKQGYVIETGELFDFGEESF
Ga0326513_1013650743300031760RumenMELLLGLSGYNLELMMSEIHYIEENLPHRVSEVICINCKHRWIAVRPCKNKLKDLECAGCHQQGYVIETGELFDFGEESF
Ga0326513_1015647433300031760RumenMIMGKTVDINENTPHKVSEVICVGCKYRWLAVRPVGTLLKDLECPHCGMQGYVIETGEEINKEEEE
Ga0326513_1066972643300031760RumenMEISIDENLPHKVSEVMCINCKYRWIAVRPTGTLLKDLECPQCRQQGYVIETGEVINENQ
Ga0326513_1069521523300031760RumenYIEENLPHRVSEVICINCKHRWIAVRPCKNSLKDLECTCCHQQGYVIETGELFDFGEESF
Ga0326513_1076106013300031760RumenLFKKVLQTKKMSEIHYIEENLPHKTSEVVCLWCLKRWIAVRPMATLLKNLECPQCHKQGYVIETGEIIDTEDYA
Ga0326513_1096962623300031760RumenMSEIHYIEECMPHKTSEVVCIVCLKRWIAARPMATLLKDIECPQCGKQGYVIETGGIINTEDYV
Ga0326513_1123637123300031760RumenMSETHYIEENLPHKTSEVVCLGCLKRWIAVRPIATLLKELECPQCGKQGFVIETGEIIDIEDYA
Ga0326513_1163157123300031760RumenIHYIEENLPHKVSEVICVNCKHRWIAVRPSTTFLKVLQCPNCKKSGYVIETGETIDYIQE
Ga0326514_10003462113300031853RumenMAEIHNIEENMPHKVSEVICINCKHRWMAVRPCVTQLKDLECPNCHEQGYVIETGEILVDADFD
Ga0326514_1011208963300031853RumenMSEIHYIEENLPHKTSEVVCLGCLKRWIAVRPMATLLKDLECPQCHKQGYVIETGEIIDIEDYA
Ga0326514_1011656533300031853RumenMSEIHYIEEKLPHKTSEVVCLGCLKRWIAVRPMATLLKDLECPQCHKQGYVIETGEIIDSEDYT
Ga0326514_1013866323300031853RumenMSEIHYIEENLPHKVSEVICINCKHRWIAVRPCACKLKDLECACCHQQGYVIETGEIIDAEDYA
Ga0326514_1079635333300031853RumenMDSPNAKIVDMNENTPHRVSEVICVKCTYRWLAVRPVITLLKDLECPWCGKQGFVIETGEVINEK
Ga0326514_1149898123300031853RumenMSEIHYIEENLPHKVSEVICINCKHRWIAVRPCANKLKDLECPQCGKQGYVIETGEIIDTRELC
Ga0326514_1163885023300031853RumenMEISIEENMPHKVSEVMCINCKHRWIAIRPTSTLLKSLECPKCGKQGFVIETGEQLKDK
Ga0326511_1006663963300031867RumenMGEIHYIEENLPHRVSEVICINCKHRWIAVRPCKNKLKDLECAGCHKQGYVIETGELFDFGEESF
Ga0326511_1051357223300031867RumenMQVSIEENIPHKVSEVICVDCKHRWIAVRPTDTLLKDLECPLCGLQGYVIETGEELKDK
Ga0326511_1108413213300031867RumenMAKITSIEENMPHKVSEVICVDCKHRWIAVRPTDTLLKDLECPLCGLQGYVIETGEQLKD
Ga0326511_1116948213300031867RumenMSEIHYIEENLPHKTSEVVCLGCLKRWIAVRPMATLLKDLECPQCHKQGYVIETGEIIDI
Ga0326511_1119852633300031867RumenMSEIHYIEENLPHKVSEVICIECKHRWIAVRPCACKLKDLECPQCGKQGYVIETGEIIDTEDYA
Ga0326511_1132283723300031867RumenMSEIHYIEENLPHKTSEVVCLGCLKRWIAVRPMATLLKDLKCPKCGKQGYVIETGEIIDTEDYA
Ga0326511_1136415923300031867RumenMSEIHYIEENLPHRVSEVICINCKHRWIAVRPCKNKLKDLECAGCHKRGYVIETGELFDFGEE
Ga0310696_1117316723300031993RumenMSEIHYIEENLPHKTSEVICLGCLKRWIAVRPMATLLKDLECPQCGKQGYVIETGEIIDSEDYV
Ga0310691_1144027323300031994RumenMSEIHYIEENLPHKTSEVVCLGCLKRWIAVRPMATLLKDLECPHCHKQGYVIETGEIIDFGEESF
Ga0310786_1009056723300031998RumenMKVDINEKTPHKVSEVVCLSCLHRWIAVRPCTCKLKDLECAGCHRQGYVIETGETFDE
Ga0310786_1037125233300031998RumenMIKDINDNQPHKVSEVICIDCKYRWLAVRPTKTLLKDLECPRCGKQGYVIETGEIIDT
Ga0310786_1107233333300031998RumenMNVTNIDEYLPHKISEVICINCKYRWIAIRGESVLLKNLECPKCNQAGFVINTGEDLLENLSQ
Ga0310695_1000839693300032007RumenMSEIHYIEENLPHKVSEVICVGCGKRWIAVRPMATLLKDLECPQCGKQGYVIETGEIINQEDYV
Ga0310695_1017098863300032007RumenMSMGKTVDINENTPHKVSEVICINCKYRWLAVRPVGTLLKDLECPICGAGYVIETGEEINTDEE
Ga0310697_1185428123300032030RumenMTNIIDINENVSHKVSEVICINCKYRWLAVRPTATLLKELECPQCRQQGYVIETGEIIND
Ga0326512_10008795143300032038RumenMSEIHYIEENLPHKTSEVVCLGCLKRWIAVRPMATLLKELECPQCGKQGYVIETGEIIDTEDYV
Ga0326512_1005794693300032038RumenPHRVSEVICINCKHRWIAVRPCKNKLKDLECAGCHKQGYVIETGELFDFGEESF
Ga0326512_1010553973300032038RumenMSEIHYIEENLPHKTSEVVCLGCLKRWIAVRPMATRLKDLECPQCHNQGYVIETGEEYNEEGL
Ga0326512_1024459443300032038RumenMSKAEVINIEENMPHKVSEVICINCKHRWIAVRPCVCKLKDLQCPQCGKQGYVIETGEVIDYE
Ga0326512_1039922443300032038RumenMSEIHYIEENLPHRVSEVICINCKHRWIAVRPCKNKLKDLECAGCHKQGYVIE
Ga0326512_1046676933300032038RumenMEKIVDINEYKPHRVSEVICINCKYRWIAVRLSTYKLRNLECAGCHKRGYVIETGEIFDENGN
Ga0326512_1061834343300032038RumenMSEIHYIEENLPHKTSEVVCLGCLKRWIAVRPMATLLKELECPQCGKQGYVIETREIIDTEDYT
Ga0326512_1084768213300032038RumenMSKTKVINIEENIPHKVSEVICINCKYRWIDVRPCACKLKDLECPQCSKQGYVIETGEAIDYE
Ga0326512_1121388723300032038RumenMSKIHYIEENLPHKVSEVICVNCKHRWIAVRPSTTFLKVLQCPNCKKSGYVIETGEIIDTEDYA
Ga0326512_1128361723300032038RumenMSKAEVIDIEENLPHKVSEVICINCKNRWIAVRPEKTLLKDLECSKCGKQGYVIETGEVIEL
Ga0310690_1006371493300033463RumenMAEIHYIEENMPHKVSEVICINCKHRWVAVRPCATKLKDLECPHCHEQGFVIETGEIMVDADFD
Ga0310690_1253556913300033463RumenMSDIVDITENLPHKVSEVICVKCGHRWIAVRPSDTKLRELECPNCTKQGYAIE


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