Metagenome Family F097630

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F097630
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	44 residues
Representative Sequence	MSAIGPKRTSLVAPHVSAFGGKADMTVCWSPLSRSLLGVKRT
Number of Associated Samples	72
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	79.61 %
% of genes near scaffold ends (potentially truncated)	92.31 %
% of genes from short scaffolds (< 2000 bps)	84.62 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.18

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (77.885 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (23.077 % of family members)
Environment Ontology (ENVO)	Unclassified (26.923 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.115 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 10.00% β-sheet: 0.00% Coil/Unstructured: 90.00%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.18
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.18
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF04392	ABC_sub_bind	48.08
PF02518	HATPase_c	3.85
PF01322	Cytochrom_C_2	2.88
PF07681	DoxX	1.92
PF07719	TPR_2	1.92
PF13505	OMP_b-brl	1.92
PF00582	Usp	0.96
PF05235	CHAD	0.96
PF14539	DUF4442	0.96
PF00211	Guanylate_cyc	0.96
PF05990	DUF900	0.96
PF14023	DUF4239	0.96
PF04519	Bactofilin	0.96
PF07690	MFS_1	0.96
PF10009	DUF2252	0.96
PF13557	Phenol_MetA_deg	0.96
PF13492	GAF_3	0.96
PF03466	LysR_substrate	0.96
PF00536	SAM_1	0.96
PF13185	GAF_2	0.96
PF12806	Acyl-CoA_dh_C	0.96
PF03734	YkuD	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	48.08
COG3909	Cytochrome c556	Energy production and conversion [C]	2.88
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	1.92
COG4270	Uncharacterized membrane protein	Function unknown [S]	1.92
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.96
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	0.96
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.96
COG3025	Inorganic triphosphatase YgiF, contains CYTH and CHAD domains	Inorganic ion transport and metabolism [P]	0.96
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.96
COG4782	Esterase/lipase superfamily enzyme	General function prediction only [R]	0.96
COG5607	CHAD domain, binds inorganic polyphosphates	Function unknown [S]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.88 %
Unclassified	root	N/A	22.12 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.88 %
Unclassified	root	N/A	22.12 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.88 %
Unclassified	root	N/A	22.12 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	54.81 %
Unclassified	root	N/A	22.12 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	47.12 %
Unclassified	root	N/A	22.12 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.96 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	23.08 %
Unclassified	root	N/A	22.12 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.92 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.12 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	13.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.92 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.96 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.96 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.96 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.12 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	9.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.92 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.96 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.96 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.96 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.12 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.92 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.96 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.96 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	0.96 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.96 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.96 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.12 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.92 %
Stigmatella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella	0.96 %
Bradyrhizobium sp. 174	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 174	0.96 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.96 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.96 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.96 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.12 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.92 %
Stigmatella aurantiaca	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella → Stigmatella aurantiaca	0.96 %
Bradyrhizobium sp. 174	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 174	0.96 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.96 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.96 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.96 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.12 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.92 %
Stigmatella aurantiaca DW4/3-1	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella → Stigmatella aurantiaca → Stigmatella aurantiaca DW4/3-1	0.96 %
Bradyrhizobium sp. 174	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 174	0.96 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.96 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.96 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.96 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.96 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664021\|ICCgaii200_c0727149	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300000041\|ARcpr5oldR_c001168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2704	Open in IMG/M
3300000041\|ARcpr5oldR_c001819	All Organisms → cellular organisms → Bacteria	2059	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_14294989	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300000559\|F14TC_101705723	All Organisms → cellular organisms → Bacteria	1284	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1012602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1612	Open in IMG/M
3300000955\|JGI1027J12803_100605281	Not Available	1441	Open in IMG/M
3300000955\|JGI1027J12803_103836488	All Organisms → cellular organisms → Bacteria	1029	Open in IMG/M
3300001431\|F14TB_100634837	All Organisms → cellular organisms → Bacteria	1234	Open in IMG/M
3300004058\|Ga0055498_10156568	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300004156\|Ga0062589_100337181	Not Available	1188	Open in IMG/M
3300004157\|Ga0062590_100297831	Not Available	1253	Open in IMG/M
3300004157\|Ga0062590_102999004	Not Available	506	Open in IMG/M
3300005332\|Ga0066388_102278290	Not Available	979	Open in IMG/M
3300005332\|Ga0066388_102357872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	964	Open in IMG/M
3300005332\|Ga0066388_102823615	Not Available	887	Open in IMG/M
3300005332\|Ga0066388_103798719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	771	Open in IMG/M
3300005332\|Ga0066388_106262797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	600	Open in IMG/M
3300005332\|Ga0066388_106519366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	588	Open in IMG/M
3300005338\|Ga0068868_100070983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2777	Open in IMG/M
3300005437\|Ga0070710_10768578	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300005546\|Ga0070696_101237693	Not Available	632	Open in IMG/M
3300005713\|Ga0066905_100286754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1285	Open in IMG/M
3300005713\|Ga0066905_100718204	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300005713\|Ga0066905_101573494	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300005713\|Ga0066905_101700972	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella → Stigmatella aurantiaca → Stigmatella aurantiaca DW4/3-1	580	Open in IMG/M
3300005713\|Ga0066905_101857440	Not Available	557	Open in IMG/M
3300005713\|Ga0066905_101879620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	554	Open in IMG/M
3300005713\|Ga0066905_102262225	Not Available	508	Open in IMG/M
3300005764\|Ga0066903_100492150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2073	Open in IMG/M
3300005764\|Ga0066903_101243542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1386	Open in IMG/M
3300005764\|Ga0066903_102540105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	992	Open in IMG/M
3300005764\|Ga0066903_103536844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	842	Open in IMG/M
3300006049\|Ga0075417_10093062	Not Available	1359	Open in IMG/M
3300006196\|Ga0075422_10308264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	680	Open in IMG/M
3300006237\|Ga0097621_100595902	All Organisms → cellular organisms → Bacteria → Proteobacteria	1010	Open in IMG/M
3300006844\|Ga0075428_100239991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1955	Open in IMG/M
3300006844\|Ga0075428_100575361	All Organisms → cellular organisms → Bacteria → Proteobacteria	1204	Open in IMG/M
3300006844\|Ga0075428_102528322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	525	Open in IMG/M
3300006845\|Ga0075421_100138778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3042	Open in IMG/M
3300006847\|Ga0075431_102060429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	525	Open in IMG/M
3300006852\|Ga0075433_10371687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1262	Open in IMG/M
3300006852\|Ga0075433_10564985	All Organisms → cellular organisms → Bacteria	999	Open in IMG/M
3300006853\|Ga0075420_101739991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	534	Open in IMG/M
3300006903\|Ga0075426_10934452	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300007076\|Ga0075435_100091187	All Organisms → cellular organisms → Bacteria → Proteobacteria	2515	Open in IMG/M
3300009094\|Ga0111539_10673141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1205	Open in IMG/M
3300009094\|Ga0111539_12310664	Not Available	624	Open in IMG/M
3300009100\|Ga0075418_10197577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2142	Open in IMG/M
3300009147\|Ga0114129_10565618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1477	Open in IMG/M
3300009147\|Ga0114129_10636594	All Organisms → cellular organisms → Bacteria	1378	Open in IMG/M
3300009156\|Ga0111538_10755017	All Organisms → cellular organisms → Bacteria	1232	Open in IMG/M
3300010043\|Ga0126380_10391603	Not Available	1028	Open in IMG/M
3300010047\|Ga0126382_11646029	All Organisms → cellular organisms → Bacteria → Proteobacteria	597	Open in IMG/M
3300010361\|Ga0126378_10301669	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1705	Open in IMG/M
3300010362\|Ga0126377_10291565	All Organisms → cellular organisms → Bacteria	1605	Open in IMG/M
3300010362\|Ga0126377_11454121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	759	Open in IMG/M
3300010362\|Ga0126377_13002971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	544	Open in IMG/M
3300010366\|Ga0126379_13329977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	538	Open in IMG/M
3300010371\|Ga0134125_10496428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1352	Open in IMG/M
3300010375\|Ga0105239_11435204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	797	Open in IMG/M
3300011119\|Ga0105246_10383697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1162	Open in IMG/M
3300012958\|Ga0164299_10652079	Not Available	728	Open in IMG/M
3300012960\|Ga0164301_10055788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2063	Open in IMG/M
3300012960\|Ga0164301_10805663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	719	Open in IMG/M
3300012961\|Ga0164302_10177391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1286	Open in IMG/M
3300012971\|Ga0126369_10073609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3006	Open in IMG/M
3300012971\|Ga0126369_10856868	Not Available	993	Open in IMG/M
3300012984\|Ga0164309_10742362	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300012985\|Ga0164308_10357008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1181	Open in IMG/M
3300014326\|Ga0157380_13324699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	514	Open in IMG/M
3300015371\|Ga0132258_10915952	Not Available	2213	Open in IMG/M
3300015371\|Ga0132258_12386615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1325	Open in IMG/M
3300015372\|Ga0132256_100805579	All Organisms → cellular organisms → Bacteria	1056	Open in IMG/M
3300015374\|Ga0132255_100937749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 174	1296	Open in IMG/M
3300015374\|Ga0132255_101391039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1060	Open in IMG/M
3300016422\|Ga0182039_12109442	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300017947\|Ga0187785_10274995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	764	Open in IMG/M
3300018060\|Ga0187765_11333852	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300025916\|Ga0207663_10142540	All Organisms → cellular organisms → Bacteria → Proteobacteria	1671	Open in IMG/M
3300025936\|Ga0207670_10779513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	796	Open in IMG/M
3300025972\|Ga0207668_10557222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	994	Open in IMG/M
3300026035\|Ga0207703_10984714	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300026121\|Ga0207683_11705891	Not Available	579	Open in IMG/M
3300027873\|Ga0209814_10248052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	772	Open in IMG/M
3300027880\|Ga0209481_10036592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2241	Open in IMG/M
3300027880\|Ga0209481_10188937	Not Available	1027	Open in IMG/M
3300027909\|Ga0209382_10093310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3534	Open in IMG/M
3300027909\|Ga0209382_10628498	All Organisms → cellular organisms → Bacteria	1165	Open in IMG/M
3300027909\|Ga0209382_11133881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	805	Open in IMG/M
3300031545\|Ga0318541_10769738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	537	Open in IMG/M
3300031668\|Ga0318542_10758146	Not Available	508	Open in IMG/M
3300031854\|Ga0310904_10018148	All Organisms → cellular organisms → Bacteria	3034	Open in IMG/M
3300031910\|Ga0306923_10533368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1324	Open in IMG/M
3300031944\|Ga0310884_10138001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1244	Open in IMG/M
3300031946\|Ga0310910_11518692	Not Available	513	Open in IMG/M
3300031947\|Ga0310909_10445074	Not Available	1087	Open in IMG/M
3300031981\|Ga0318531_10199491	Not Available	902	Open in IMG/M
3300032003\|Ga0310897_10004464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3816	Open in IMG/M
3300032052\|Ga0318506_10432186	Not Available	584	Open in IMG/M
3300032076\|Ga0306924_10966875	All Organisms → cellular organisms → Bacteria → Proteobacteria	937	Open in IMG/M
3300032180\|Ga0307471_102756477	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300032782\|Ga0335082_10074508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3427	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	62.50%
Host-Associated	Host-Associated	37.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.54%
Plants	Host-Associated → Plants	37.50%
Aquatic	Environmental → Aquatic	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.54%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.65%
Marine	Environmental → Aquatic → Marine	0.96%
Roots	Host-Associated → Plants → Roots	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	25.96%
Loam	Environmental → Terrestrial → Soil → Loam	22.12%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.77%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.92%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.96%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	25.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.35%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.38%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.58%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.88%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.88%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	23.08%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	16.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.88%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.92%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.96%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000041	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 old rhizosphere	Host-Associated	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004058	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICCgaii200_07271492	2228664021	Soil	VNGAMSAFGPKQTLPLAPHMSAFGSKADITVCGNP
ARcpr5oldR_0011681	3300000041	Arabidopsis Rhizosphere	MSGMSAIGPKRTLTSAPHMSAFGGEADMTVCGCLLSRSLLGVK
ARcpr5oldR_0018191	3300000041	Arabidopsis Rhizosphere	MSAYGPLRTWPLALQMSAFRGRADITFRGGPLSWSLSGVKR
ICChiseqgaiiFebDRAFT_142949891	3300000363	Soil	VNGAMSAFGPKQTLPLAPHMSAFGSKADITVCGNPLSRSL
F14TC_1017057232	3300000559	Soil	VNGAMSAFGPKQTLPLAPHMSAFGSKADITVCGNPL
AF_2010_repII_A100DRAFT_10126022	3300000655	Forest Soil	MNYGMSAFGPKQTSATALHMSAFGGKADMAFCGISLSRSLLGVKRT*
JGI1027J12803_1006052811	3300000955	Soil	MVDAVHESAIGPKRTCTAAPRMSAFGGKADIAFRGISLSRSLLGVKRTCLIAA
JGI1027J12803_1027587154	3300000955	Soil	MSAIGPKRTFLFAPHMSALGSKADITFFESPLSRSLL
JGI1027J12803_1038364883	3300000955	Soil	VNGAMSAFGPKQTLPLAPHMSAFGSKADITVCGNPLSRSLL
F14TB_1006348372	3300001431	Soil	VIGMMSAIGPKRTYACALHMSAFGGKADMSVCGGPLSRSLL
Ga0055498_101565682	3300004058	Natural And Restored Wetlands	MSAIGPKQTSLVAPHMSAFGGRADMTLCECPLFRSLLGVKRTGLVA
Ga0062589_1003371814	3300004156	Soil	MSAIGPSPTFRFALHLSAFGGKADMTFRECLLSRSLLGVK
Ga0062590_1002978311	3300004157	Soil	MSGMSAIGPKRTLTSAPHMSAFGGEADMTVCGCLLSRSLLGVKRT
Ga0062590_1029990041	3300004157	Soil	MSAIGPKQTWASALHTSAFGVKADMTVRRSPLSRALLGVERTW
Ga0066388_1022782903	3300005332	Tropical Forest Soil	VNYAMSAIGPKQTWTVALHMSALGGKADMTVCGCLLSRSLLGVKRTW
Ga0066388_1023578723	3300005332	Tropical Forest Soil	VMSAFGPKQTWRIALHMSAIGGKADMAFCGISLSRSLLGVKQT
Ga0066388_1028236152	3300005332	Tropical Forest Soil	MSAFGPKRTFMVASHMSAFGGKADMTLGRCLLLRSLFGVKRTC
Ga0066388_1037987194	3300005332	Tropical Forest Soil	VTIQIAAVRESAIGSKRTYACAPHMSAFGGKADMTLCGNSLLRSLLGVKR
Ga0066388_1062627971	3300005332	Tropical Forest Soil	MADKLSVPRMSAIGPKQTWAGALHMSAFRGKADMTVCGCLLSRSLLGAKRTS
Ga0066388_1065193662	3300005332	Tropical Forest Soil	VNGEMSAIGPKRTSLAALHMSAFGGKADMTFCGNPLSRSLLGVK
Ga0068868_1000709831	3300005338	Miscanthus Rhizosphere	MQMSAFGPKQTSLVALHMSAFGGKADMTVYRSPLSRSLLGVKRTSL
Ga0070710_107685782	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MLFAAVHESAFGPKRTSLVALHMSAFGGKADMTVCGKSLSRSLLG
Ga0070696_1012376932	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MSAIGPKQTSPFALHMSAIGVEADMTVFGNPLSRSLLGAKRT
Ga0066905_1002867542	3300005713	Tropical Forest Soil	MSAIGPKQTLPCALHESAFGGKADMTVWGSPLSRSLLGVKQTS
Ga0066905_1007182041	3300005713	Tropical Forest Soil	MSGGMSAIGPKRTWTTALHMPAFRGKADMTVCGCLLSRSLSGVKRT
Ga0066905_1015734942	3300005713	Tropical Forest Soil	MNAPMSAIGPKQTWASAVHMSAFGCKADMPVCGCPLLRSLLGVKRTCVAAPHES
Ga0066905_1017009722	3300005713	Tropical Forest Soil	MSAIGPKRTLASALHMSAFGGKADMAFCGISLSWSLLGVKQT
Ga0066905_1018574401	3300005713	Tropical Forest Soil	MRIISRMSAFGPKQTCTSALHMSAFGCKADMTVCGCLLSRSLLG
Ga0066905_1018796202	3300005713	Tropical Forest Soil	MFAIGPKRTRAIAPQMSAFGGKPDITFAGSPLSRSLLGVNRTWAGAVQM
Ga0066905_1022622252	3300005713	Tropical Forest Soil	MSAIGPKRTSALAPHMSAFGGKADMTFCGNPRSRSLLGVKRTCLLALHMSAY
Ga0066903_1004921501	3300005764	Tropical Forest Soil	MSAIGPKRTLASALHMSAFGGKADMAFCGISLSWSLLGVKQTCSLAAHMFAF
Ga0066903_1012435422	3300005764	Tropical Forest Soil	MSAFGPKRTFGFALHMSAFEGKAEMTVCGSPLLRSLLGVK
Ga0066903_1025401051	3300005764	Tropical Forest Soil	MMSGTSAIGPKRTSLVAPHMSALGGKADMTVCASPLSGRYRG*
Ga0066903_1035368442	3300005764	Tropical Forest Soil	MSAFGPKQTWPLALHMSAFSGKADMTFRGCLLLRSLLG*
Ga0075417_100930623	3300006049	Populus Rhizosphere	MSAFGPKQTSLVAPHMSAFGGKADMTSCGDPLLRSLLGL
Ga0075422_103082641	3300006196	Populus Rhizosphere	MSGMSAIGPKRTLTSAPHMSAFGGEADMTVCGCLLSRSLLGVKRTWPF
Ga0097621_1005959021	3300006237	Miscanthus Rhizosphere	MSAFGPKQTWAVAPHMSAVGSKADMTFCENPLSRSLLGRE
Ga0075428_1002399911	3300006844	Populus Rhizosphere	MSAFGPKQTWACAPHMSAFGGKADMGYCGSPLSRSLLGVKRTW
Ga0075428_1005753613	3300006844	Populus Rhizosphere	MVMSAFGPKQTSGSAPHMSAFGGKADMTVCGNPLSRS
Ga0075428_1025283222	3300006844	Populus Rhizosphere	MSAFGPKQTSASALHMSAIGCKADMAFCGITLSRSLSGVKRTWLVAA
Ga0075421_1001387782	3300006845	Populus Rhizosphere	MLFAALHESAIGPKRTSLVAPHMSAFGGKADMAFCENPLSRSLLGVKRT*
Ga0075431_1020604291	3300006847	Populus Rhizosphere	MNGRMSAFGPKRTSLVAPHMSAFGGKADMTVCGNPL
Ga0075433_103716874	3300006852	Populus Rhizosphere	MSAIGPKRTSLVAPHRSAFGGKADIACCENPLSWSLLGVTRTTLTR
Ga0075433_105649852	3300006852	Populus Rhizosphere	MSAFGPKQTSLVAPHMSAFGGKADMTVCGNPLSRSL
Ga0075420_1017399912	3300006853	Populus Rhizosphere	MNGRMSAFGPKRTSLVAPHMSAFGGKADMTVCGNPLLRSLLGAKRTCLI
Ga0075426_109344521	3300006903	Populus Rhizosphere	LNFEMSAIGPKQTLLIAPQMSAFVAKADMAFWGISLSRSLLGVKRTWLVAA
Ga0075435_1000911876	3300007076	Populus Rhizosphere	MSAIGPKQTSPFALHMSAFGVEADMTVFGNPLSRSRV*
Ga0111539_106731412	3300009094	Populus Rhizosphere	MNGGMSAIGPKQTWAAAPHMSAFGGKADMAFCENPLSRSLLGVKR
Ga0111539_123106641	3300009094	Populus Rhizosphere	MSAIGPKRTFLVAPHMSAFGGKADMGYCGSPLSRSLLGVKRTWVGALHMS
Ga0075418_101975772	3300009100	Populus Rhizosphere	MSAIGPKRTFLVAPHMSAFGGKADMAYCGMSLSRSLL
Ga0114129_105656181	3300009147	Populus Rhizosphere	MSAIAPKQTLVSALHMSAFGGKADMACCGNPLSRSLL
Ga0114129_106365941	3300009147	Populus Rhizosphere	MSAFGPKQTWACAPHMSAFGGKADMGYCGSPLSRSLLGVKRTWV
Ga0111538_107550171	3300009156	Populus Rhizosphere	MDFAAMHESAIGPKRTSVAASHMSALGGKADMACCGNSLSRSLLGVKRTCPF
Ga0126380_103916031	3300010043	Tropical Forest Soil	MSAIGPMQTCSFAPHMSAFGGKADMTICACLLLRLLLGVKRTWR
Ga0126382_116460291	3300010047	Tropical Forest Soil	MSAFGPKRTFLFALHMSAFGGKADMTVCGNPLSQSPLGVK
Ga0126378_103016692	3300010361	Tropical Forest Soil	MSAFGPKQTCACAVQESAFGGKADMTFHGKSLSWSLLGVKRTWAGAAQ
Ga0126377_102915654	3300010362	Tropical Forest Soil	MIFFCAAHKSAFGPKQTSLVAPHMSAFGCKADMTLCGSPLSRSLLGVKRT
Ga0126377_114541211	3300010362	Tropical Forest Soil	MSAIGPKRTSLVAPHVSAFGGKADMTVCWSPLSRSLLGVKRT
Ga0126377_130029712	3300010362	Tropical Forest Soil	MLVMSAYSPKQTSAGAPHMSAFGGKADMAFCGISLSRSLLGVKR
Ga0126379_133299771	3300010366	Tropical Forest Soil	MSAIGPKQTWPIALHMSAFGGEADMTFCGISLSRLLLGVKQ
Ga0134125_104964281	3300010371	Terrestrial Soil	MSAIGPKPTSLVAAHASAFGGEADMAFCGSPLLRSLS
Ga0105239_114352041	3300010375	Corn Rhizosphere	MSPMSAIGPKRTYRFALHMSAFGGKADMTFCGSLLSWSLLGAKRT
Ga0105246_103836972	3300011119	Miscanthus Rhizosphere	MSAFGPKQTSPIALHMSAFGGKADMAFRGSPLLRS
Ga0164299_106520791	3300012958	Soil	MSAIGPSQTSLVAVHMSAFGGKADMTIGTCPLLQSQLGVKRTWLV
Ga0164301_100557882	3300012960	Soil	MSAIGPKQTWALALHMSAFGDKADITFFENPLSWSLLGVERT
Ga0164301_108056632	3300012960	Soil	MSASAPKQTSLVAAHMSAFGGKADMAYRGNTLSRSLLGLKRTW
Ga0164302_101773911	3300012961	Soil	VIAGMSAFGPKRTSLVAPHMSAFGGKADMIFCEGPLSRSLLGAKRTSL
Ga0126369_100736094	3300012971	Tropical Forest Soil	VIALHMSAFGPKQTWLGALQMSAFGTKADMAFCGISLSR
Ga0126369_108568682	3300012971	Tropical Forest Soil	MSAIGPKQTCTDALHMSAFGGKADMTGCRSPLLRSLLGVKRTWPFAA
Ga0164309_107423622	3300012984	Soil	MLDFSTDLSAIGPKRTFLVALHMSAFGGKADMAVCENPLSR
Ga0164308_103570081	3300012985	Soil	MSAIGPKQTWAVAPHMSAFRGNADVTFCGNKLSRSLLG
Ga0157380_133246992	3300014326	Switchgrass Rhizosphere	MSGMSAIGPKRTLTSAPHMSAFGGEADMTVCGCLLSRSLLGVKRTSHFAAQ
Ga0132258_109159521	3300015371	Arabidopsis Rhizosphere	VRMSAIGPERTSLVAPHMSAFGGKADMTLRGNPLSRSLSGVK
Ga0132258_123866151	3300015371	Arabidopsis Rhizosphere	MSALGPKRTLSFATHMSAFEGKADMTFCGNPLSRSLLG
Ga0132256_1008055791	3300015372	Arabidopsis Rhizosphere	MSAIGPKPTLAFAAHMSASRGKADMTISASPLSRSLFGLKRTWLFAL
Ga0132255_1009377491	3300015374	Arabidopsis Rhizosphere	MSAIGTKRTSPVAPHMSAFGGKADMAFCGNPLSRSLLRVKRTS
Ga0132255_1013910393	3300015374	Arabidopsis Rhizosphere	MMSAIGPKRTCVAALHESAIGGKADMTIGTCPLSWSLLGVKR
Ga0182039_121094421	3300016422	Soil	MSAIGPKRTSLIAPHMSAFGGKAEMAFFGMSLSRSLLGVKRTWLF
Ga0187785_102749952	3300017947	Tropical Peatland	MIGTMSAFGPKQTLRCALHESAFGGKADMTVCRSPLSQSLLGVK
Ga0187765_113338521	3300018060	Tropical Peatland	MSATQPTRPVAMHMSTFGGKADMAGCGSPLLRSLSGAKRTWLFA
Ga0207663_101425401	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VIAGMSAFGPKRTSLVAPHMSAFGGKADMIFCEGPLSRSLLGA
Ga0207670_107795132	3300025936	Switchgrass Rhizosphere	MSAIGPKRTSLAAPNMSAFGGKADMTVCGVSLLRSLLVESGHGLLRRT
Ga0207668_105572222	3300025972	Switchgrass Rhizosphere	MSAFGPKQTSPIALHMSAFGGKADMAFRGSPLLRSLLGAKRTWRF
Ga0207703_109847141	3300026035	Switchgrass Rhizosphere	MSAFGPKQTWAVAPHMSAVGSKADMTFCENPLSRSLLGREAR
Ga0207683_117058912	3300026121	Miscanthus Rhizosphere	MSAFGPKQTWAVAPHMSAVGSKADMTFCENPLSRSL
Ga0209814_102480521	3300027873	Populus Rhizosphere	MSAIGPKQTWAFALHMSAFGGKADMTVCGNPLSRSLLGAKRTSH
Ga0209481_100365923	3300027880	Populus Rhizosphere	MSAIGPKRTSLVALHMSALGGKADMTISACLLLWSLLGVKRTSIIAAH
Ga0209481_101889372	3300027880	Populus Rhizosphere	MSAFGPKQTSLVAPHMSAFGGKADMTSCGDPLLRSLLGLKRTSLFAVRM
Ga0209382_100933104	3300027909	Populus Rhizosphere	MLFAALHESAIGPKRTSLVAPHMSAFGGKADMAFCENPLSRSLLGVKRT
Ga0209382_106284981	3300027909	Populus Rhizosphere	MDFAAMHESAIGPKRTSVAASHMSALGGKADMACCGNSLSRSLLGVKRTCP
Ga0209382_111338812	3300027909	Populus Rhizosphere	MSAIGPKRTSLVALHMSAFGGKADMTLCGNPLLRSLLGASGRA
Ga0318541_107697382	3300031545	Soil	MSAIGPKRTSTSAPHMSAFGMKADMTVCGSPLLRSLLGAKRTSASALHM
Ga0318542_107581461	3300031668	Soil	MSAFGPKRTLAIALHMSALRGKADMTVCGSPLSRSLLGVKRTCLCALRMSAY
Ga0310904_100181484	3300031854	Soil	MSGMSAIGPKRTLTSAPHMSAFGGEADMTVCGCLLSRSLLGVKRTSHFAAQMSA
Ga0306923_105333682	3300031910	Soil	MSAIGPKQTSLVAPHMSAFGGKADMAVCGSPLSRSLLGVKRTWLVAAH
Ga0310884_101380011	3300031944	Soil	MSVAMSAIGPKQTSLVAPHMSAFRGRADMTFCGGPLSRSLLGVKRTSLFVAH
Ga0310910_115186922	3300031946	Soil	MSAIGPNQTSASAAHMSAFRGKADMIVCGRPLSRSLLGVKRI
Ga0310909_104450742	3300031947	Soil	AVMSAYGPKQTFLFALHMSAFGGKADMTLCGNSLLRSLLGVKRT
Ga0318531_101994911	3300031981	Soil	KDPGAVMSAYGPKQTFLFALHMSAFGGKADMTLCGNSLLRSLLGVKRT
Ga0310897_100044648	3300032003	Soil	MSVAMSAIGPKQTSLVAPHMSAFRGRADMTFCGGPLSRSLLGVKRT
Ga0318506_104321861	3300032052	Soil	MSAFGPKRTLAIALHMSALRGKADMTVCGSPLSRSLLGVK
Ga0306924_109668752	3300032076	Soil	MSAFGPKRTSPVAPHMSAFGGKADMAFCGISLSMSLLGLKRT
Ga0307471_1027564772	3300032180	Hardwood Forest Soil	MSAFGPKQTCSFAPHMSAFGGKADMAYCGMSLSRSLLGVKQ
Ga0335082_100745085	3300032782	Soil	MSAIGPKQKWVGAPHRSASGSKADMTFSGGPLSRSLFGAK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F097630

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences