Metagenome / Metatranscriptome Family F097742

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097742
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	58 residues
Representative Sequence	MPGAGHCRHCYGNCPGTCLLPGGGGLCIHKPVPKLTVGQRLALVRTRRFWHRVLRGTR
Number of Associated Samples	85
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	93.27 %
% of genes near scaffold ends (potentially truncated)	11.54 %
% of genes from short scaffolds (< 2000 bps)	64.42 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (67.308 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (22.115 % of family members)
Environment Ontology (ENVO)	Unclassified (31.731 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (70.192 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 22.09% β-sheet: 0.00% Coil/Unstructured: 77.91%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF11941	DUF3459	30.77
PF01828	Peptidase_A4	5.77
PF08220	HTH_DeoR	4.81
PF01923	Cob_adeno_trans	4.81
PF00732	GMC_oxred_N	1.92
PF00528	BPD_transp_1	1.92
PF01872	RibD_C	1.92
PF09851	SHOCT	1.92
PF02353	CMAS	1.92
PF08843	AbiEii	0.96
PF02627	CMD	0.96
PF00501	AMP-binding	0.96
PF14833	NAD_binding_11	0.96
PF13474	SnoaL_3	0.96
PF01596	Methyltransf_3	0.96
PF00392	GntR	0.96
PF08327	AHSA1	0.96
PF02350	Epimerase_2	0.96
PF00306	ATP-synt_ab_C	0.96
PF00005	ABC_tran	0.96
PF08349	DUF1722	0.96
PF00664	ABC_membrane	0.96
PF04525	LOR	0.96
PF13520	AA_permease_2	0.96
PF11139	SfLAP	0.96
PF00999	Na_H_Exchanger	0.96
PF00069	Pkinase	0.96
PF13147	Obsolete Pfam Family	0.96
PF12840	HTH_20	0.96
PF13193	AMP-binding_C	0.96
PF03625	DUF302	0.96
PF08543	Phos_pyr_kin	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.85
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	1.92
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	1.92
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	1.92
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	1.92
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	1.92
COG2230	Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases	Lipid transport and metabolism [I]	1.92
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG2870	ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase	Cell wall/membrane/envelope biogenesis [M]	0.96
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.96
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.96
COG3272	Uncharacterized conserved protein YbgA, DUF1722 family	Function unknown [S]	0.96
COG3439	Uncharacterized conserved protein, DUF302 family	Function unknown [S]	0.96
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.96
COG4123	tRNA1(Val) A37 N6-methylase TrmN6	Translation, ribosomal structure and biogenesis [J]	0.96
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.96
COG4894	Putative phospholipid scramblase YxjI, Tubby2 superfamily	Lipid transport and metabolism [I]	0.96
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.96
COG0055	FoF1-type ATP synthase, beta subunit	Energy production and conversion [C]	0.96
COG0056	FoF1-type ATP synthase, alpha subunit	Energy production and conversion [C]	0.96
COG0351	Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	Coenzyme transport and metabolism [H]	0.96
COG0381	UDP-N-acetylglucosamine 2-epimerase	Cell wall/membrane/envelope biogenesis [M]	0.96
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.96
COG0524	Sugar or nucleoside kinase, ribokinase family	Carbohydrate transport and metabolism [G]	0.96
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.96
COG0707	UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase	Cell wall/membrane/envelope biogenesis [M]	0.96
COG1155	Archaeal/vacuolar-type H+-ATPase catalytic subunit A/Vma1	Energy production and conversion [C]	0.96
COG1156	Archaeal/vacuolar-type H+-ATPase subunit B/Vma2	Energy production and conversion [C]	0.96
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.96
COG2240	Pyridoxal/pyridoxine/pyridoxamine kinase	Coenzyme transport and metabolism [H]	0.96
COG2253	Predicted nucleotidyltransferase component of viral defense system	Defense mechanisms [V]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.31 %
Unclassified	root	N/A	32.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	67.31 %
Unclassified	root	N/A	32.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	67.31 %
Unclassified	root	N/A	32.69 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	64.42 %
Unclassified	root	N/A	32.69 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	63.46 %
Unclassified	root	N/A	32.69 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	44.23 %
Unclassified	root	N/A	32.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.69 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	7.69 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.85 %
Catenulisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales	2.88 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2.88 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.92 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.96 %
Jiangellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.69 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.85 %
Catenulisporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae	2.88 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.88 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1.92 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.96 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	0.96 %
Jiangellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae	0.96 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.96 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.69 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.85 %
Catenulispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora	2.88 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.88 %
Phytoactinopolyspora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Phytoactinopolyspora	0.96 %
Actinoallomurus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinoallomurus	0.96 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.96 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.96 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.96 %
Blastococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus	0.96 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.69 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.85 %
Catenulispora acidiphila	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila	2.88 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.88 %
Actinoallomurus bryophytorum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinoallomurus → Actinoallomurus bryophytorum	0.96 %
Phytoactinopolyspora endophytica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Phytoactinopolyspora → Phytoactinopolyspora endophytica	0.96 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.96 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.96 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.96 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.96 %
Blastococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100350694	All Organisms → cellular organisms → Bacteria	1357	Open in IMG/M
3300002245\|JGIcombinedJ26739_101683294	Not Available	533	Open in IMG/M
3300003505\|JGIcombinedJ51221_10038674	All Organisms → cellular organisms → Bacteria	1770	Open in IMG/M
3300004092\|Ga0062389_102559565	Not Available	678	Open in IMG/M
3300004092\|Ga0062389_103926617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Phytoactinopolyspora → Phytoactinopolyspora endophytica	558	Open in IMG/M
3300004152\|Ga0062386_100018490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5063	Open in IMG/M
3300004635\|Ga0062388_101860452	Not Available	619	Open in IMG/M
3300005445\|Ga0070708_100042022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4010	Open in IMG/M
3300005471\|Ga0070698_100279466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1601	Open in IMG/M
3300005518\|Ga0070699_100838798	Not Available	841	Open in IMG/M
3300005534\|Ga0070735_10324476	Not Available	926	Open in IMG/M
3300005536\|Ga0070697_100366524	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1246	Open in IMG/M
3300005537\|Ga0070730_10012361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	6930	Open in IMG/M
3300005538\|Ga0070731_10064548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	2431	Open in IMG/M
3300005538\|Ga0070731_10160828	Not Available	1490	Open in IMG/M
3300005541\|Ga0070733_10997229	Not Available	562	Open in IMG/M
3300005591\|Ga0070761_10158405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1329	Open in IMG/M
3300005602\|Ga0070762_10328962	Not Available	969	Open in IMG/M
3300005610\|Ga0070763_10046994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2039	Open in IMG/M
3300005610\|Ga0070763_10171729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1143	Open in IMG/M
3300005712\|Ga0070764_10020390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3299	Open in IMG/M
3300006176\|Ga0070765_100106142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2437	Open in IMG/M
3300006176\|Ga0070765_100209036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1774	Open in IMG/M
3300006176\|Ga0070765_100585443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1052	Open in IMG/M
3300006176\|Ga0070765_101931980	Not Available	553	Open in IMG/M
3300006893\|Ga0073928_10134058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2021	Open in IMG/M
3300009520\|Ga0116214_1004445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5092	Open in IMG/M
3300009698\|Ga0116216_10774662	Not Available	575	Open in IMG/M
3300010048\|Ga0126373_10101255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2665	Open in IMG/M
3300010337\|Ga0134062_10570827	Not Available	579	Open in IMG/M
3300010343\|Ga0074044_10103979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinoallomurus → Actinoallomurus bryophytorum	1910	Open in IMG/M
3300010876\|Ga0126361_10148380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2307	Open in IMG/M
3300014169\|Ga0181531_10772188	Not Available	599	Open in IMG/M
3300014654\|Ga0181525_10730337	Not Available	557	Open in IMG/M
3300017924\|Ga0187820_1023259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1572	Open in IMG/M
3300017926\|Ga0187807_1031298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1647	Open in IMG/M
3300017928\|Ga0187806_1007917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2946	Open in IMG/M
3300017932\|Ga0187814_10083173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1175	Open in IMG/M
3300017933\|Ga0187801_10279529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	676	Open in IMG/M
3300017942\|Ga0187808_10337706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	682	Open in IMG/M
3300017943\|Ga0187819_10354171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	848	Open in IMG/M
3300017959\|Ga0187779_10239602	Not Available	1146	Open in IMG/M
3300017970\|Ga0187783_10133493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1830	Open in IMG/M
3300017970\|Ga0187783_10236324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1338	Open in IMG/M
3300017974\|Ga0187777_11302389	Not Available	534	Open in IMG/M
3300017975\|Ga0187782_10413607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1026	Open in IMG/M
3300017975\|Ga0187782_10421492	Not Available	1016	Open in IMG/M
3300017993\|Ga0187823_10092587	Not Available	893	Open in IMG/M
3300018001\|Ga0187815_10038720	Not Available	2017	Open in IMG/M
3300018060\|Ga0187765_11132071	Not Available	545	Open in IMG/M
3300018062\|Ga0187784_10191592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1669	Open in IMG/M
3300018085\|Ga0187772_10002146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9693	Open in IMG/M
3300018085\|Ga0187772_10387610	Not Available	971	Open in IMG/M
3300018482\|Ga0066669_10926314	Not Available	782	Open in IMG/M
3300020580\|Ga0210403_10470310	Not Available	1023	Open in IMG/M
3300020580\|Ga0210403_11347902	Not Available	543	Open in IMG/M
3300020581\|Ga0210399_10198307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1668	Open in IMG/M
3300020581\|Ga0210399_10472544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1043	Open in IMG/M
3300020583\|Ga0210401_10019136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	6589	Open in IMG/M
3300020583\|Ga0210401_10043414	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4255	Open in IMG/M
3300020583\|Ga0210401_10550899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1015	Open in IMG/M
3300021171\|Ga0210405_11137352	Not Available	582	Open in IMG/M
3300021180\|Ga0210396_10799228	Not Available	809	Open in IMG/M
3300021180\|Ga0210396_11548475	Not Available	543	Open in IMG/M
3300021181\|Ga0210388_10008594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila	8078	Open in IMG/M
3300021388\|Ga0213875_10081597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1509	Open in IMG/M
3300021401\|Ga0210393_10034253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3970	Open in IMG/M
3300021407\|Ga0210383_10082811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2688	Open in IMG/M
3300021474\|Ga0210390_10185928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1756	Open in IMG/M
3300021477\|Ga0210398_10039001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3942	Open in IMG/M
3300021479\|Ga0210410_10398174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1234	Open in IMG/M
3300021559\|Ga0210409_10111603	Not Available	2517	Open in IMG/M
3300021559\|Ga0210409_10533297	Not Available	1039	Open in IMG/M
3300021560\|Ga0126371_10182902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2182	Open in IMG/M
3300022557\|Ga0212123_10083040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2694	Open in IMG/M
3300022709\|Ga0222756_1075534	Not Available	544	Open in IMG/M
3300025134\|Ga0207416_1067835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus	1398	Open in IMG/M
3300025910\|Ga0207684_10023164	All Organisms → cellular organisms → Bacteria	5303	Open in IMG/M
3300026551\|Ga0209648_10033431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila	4483	Open in IMG/M
3300027030\|Ga0208240_1000404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4984	Open in IMG/M
3300027497\|Ga0208199_1000341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	19326	Open in IMG/M
3300027729\|Ga0209248_10099056	Not Available	880	Open in IMG/M
3300027829\|Ga0209773_10004150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	5342	Open in IMG/M
3300027857\|Ga0209166_10363652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	755	Open in IMG/M
3300027869\|Ga0209579_10041646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2469	Open in IMG/M
3300027889\|Ga0209380_10032091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2964	Open in IMG/M
3300027905\|Ga0209415_10279002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1467	Open in IMG/M
3300027908\|Ga0209006_10050910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3721	Open in IMG/M
3300028906\|Ga0308309_10101032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2231	Open in IMG/M
3300028906\|Ga0308309_10247216	Not Available	1491	Open in IMG/M
3300029999\|Ga0311339_10067156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	4653	Open in IMG/M
3300030490\|Ga0302184_10180029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	899	Open in IMG/M
3300030743\|Ga0265461_11138267	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	795	Open in IMG/M
3300030878\|Ga0265770_1151590	Not Available	509	Open in IMG/M
3300031708\|Ga0310686_102540583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3902	Open in IMG/M
3300031708\|Ga0310686_113785220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2111	Open in IMG/M
3300031715\|Ga0307476_11138310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	572	Open in IMG/M
3300031718\|Ga0307474_10078280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → Catenulispora acidiphila	2457	Open in IMG/M
3300031718\|Ga0307474_10370144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1112	Open in IMG/M
3300031753\|Ga0307477_10189218	Not Available	1433	Open in IMG/M
3300031765\|Ga0318554_10033265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2776	Open in IMG/M
3300031795\|Ga0318557_10232069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	844	Open in IMG/M
3300032094\|Ga0318540_10521022	Not Available	574	Open in IMG/M
3300032160\|Ga0311301_10457756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1917	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.04%
Host-Associated	Host-Associated	0.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.81%
Aquatic	Environmental → Aquatic	19.23%
Plants	Host-Associated → Plants	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.88%
Freshwater	Environmental → Aquatic → Freshwater	16.35%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.88%
Peat	Environmental → Terrestrial → Peat	1.92%
Roots	Host-Associated → Plants → Roots	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.15%
Loam	Environmental → Terrestrial → Soil → Loam	21.15%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	16.35%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	10.58%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.96%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.35%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.58%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	8.65%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.81%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	2.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.12%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	11.54%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	9.62%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	8.65%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	6.73%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.77%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.85%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.88%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.92%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.96%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.96%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.96%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022709	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025134	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027030	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF041 (SPAdes)	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030490	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_3	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300030878	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1003506942	3300002245	Forest Soil	MPAAGHCRHCYGDCPGTCLLPGDTGLCIHKPAPXLTVGQWVALXRTRRFWRRVLRGDRSVPS*
JGIcombinedJ26739_1016832941	3300002245	Forest Soil	MSAGHCRHCYGDCAGRCLLPGDGDRCIHKSAPTLTLGQWLALWRTRRFWRRV
JGIcombinedJ51221_100386742	3300003505	Forest Soil	MPYAGHCRHCYGNCPGNCLLPGGGGLCIHKPVPKLTVGQWLALVRTRRFWHQVLRGTR*
Ga0062389_1025595651	3300004092	Bog Forest Soil	MPPAGHCRHCLGNCPGSCLLPGGAGLCIHQPTLKLTAGQRLAAMRTRRFWRRVFWGSRPPSA*
Ga0062389_1039266172	3300004092	Bog Forest Soil	MPDVNHCRHCYGDCGGGCLLPGGGGLCIHKPVPKRTAREWLIMLRTRQFWLRAV
Ga0062386_1000184903	3300004152	Bog Forest Soil	MPAASHCRHCYGDCPGNCLLPGGGGGCIHKSAPLTAAQRLARWRTREFWRRVVRGLR*
Ga0062388_1018604522	3300004635	Bog Forest Soil	MPAPGHCRHCLGNCPGSCLLPGGEGLCIHQPTPKLTVRQRLAQLRTRRFWHRVFWGAY*
Ga0070708_1000420223	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MPVVAHCRHCLGDCGGDCLLPGGGGLCIHKPVPKRTLGERLALLRTRRFWGRGFRGPSAGERH*
Ga0070698_1002794663	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MPGAGHCRHCYGNCPGSCLLPGTDGLCIHKPTPKLTAGQRLALLRTRWFWHRVLRGTR*
Ga0070699_1008387982	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MPVVAHCRHCFGDCGGGCLLPGGGGLCIHKPVPKRTLGERLALLRTRRFWGRGFRGPSAGERH*
Ga0070735_103244762	3300005534	Surface Soil	MPGPAHCRHCYGACPGNCLLPGTEGLCIHRPAPKLTPGQRLALLRTRRFWLRVLHGTR*
Ga0070697_1003665241	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MPVVAHCRHCLGDCSGDCLLPGGGGLCIHKPVPKRTLGERLALLRTRRFWGRGFRGPSAGERH*
Ga0070730_100123616	3300005537	Surface Soil	MPGPAHCRHCYGACPGNCLLPGTEGLCIHRPAPKLTPGQRLALLRTRRFWLRVLRGTR*
Ga0070731_100645482	3300005538	Surface Soil	MPAAGHCRHCYGDCPGNCLLPGLAGRCIHGAYPKLPVGRRLARVRTRGFWRRVLRGVNAK
Ga0070731_101608281	3300005538	Surface Soil	MPAIGHCRHCYGDCPGNCLLPGLEGRCIHGAYPKLPVGRRLARVRTRGFWRRVLRGVNAK
Ga0070733_109972292	3300005541	Surface Soil	MPVAGHCRHCYGDCPGNCLLPGTGGLCIHQPAPRLTVGQRLALVRTRRFWHRLLRGTR*
Ga0070761_101584052	3300005591	Soil	VQGSYHRLEQGREMPYAGHCRHCYGDCPGNCLLPGAGGLCIHKPVPKLTVGQWLALVGTRRFWHQVLRGTR*
Ga0070762_103289622	3300005602	Soil	MPYAGHCRHCYGDCPGSCLLPGGAGLCIHRPVPKLTVGQRLALMRTRRFWHRVFRGTR*
Ga0070763_100469943	3300005610	Soil	MPYAGHCRHCYGDCPGSCLLPGGAGLCIHRRVPKLTVGQRLALMRTRRFWHRVFRGTR*
Ga0070763_101717292	3300005610	Soil	MPSAAHCRHCYGDCPGTCLLPGSDGLCIHKPVPKLTAGQWLAVLRTRRFWHQVLRGTR*
Ga0070764_100203903	3300005712	Soil	MPYAGHCRHCYGDCPGNCLLPGGGGLCIHKPVPKLTVGQWLALVGTRRFWHQVLRGTR*
Ga0070765_1001061423	3300006176	Soil	MPAVSHCRHCYGNCPGNCLLPGGSGGCIHKPARLTAAQRLARWRTRAFWRRVVRGLR*
Ga0070765_1002090363	3300006176	Soil	MPSAAHCRHCYGDCPGTCLLPGGDGLCIHKPVPKLTVGQWLAVLRTRRFWHQVLRGTR*
Ga0070765_1005854432	3300006176	Soil	VQGSYDRLEQGREMPYAGHCRHCYGDCPGNCLLPGAGGLCIHKPVPKLTVGQWLALVGTRRFWHQVLRGTR*
Ga0070765_1019319801	3300006176	Soil	MPGPAHCRHCYGACPGNCLLPGTDGLCIHRPAPKLTPGQRLALLRTRRFWLRVLHGTR*
Ga0073928_101340584	3300006893	Iron-Sulfur Acid Spring	MPGPAHCRHCYGACPGNCLLPGTEGLCIHRPAPKLTPGQRLALLRTRRFWLRLLHGTR*
Ga0116214_10044452	3300009520	Peatlands Soil	MPGAGHCRHCYGDCGGGCLLPGGGGLCIHMPAPKLTAGRRLALLRTRRFWRRVFRGVQ*
Ga0116216_107746622	3300009698	Peatlands Soil	MPVVAHCRHCFGDCGGECLLPGGGGLCIHKPVPKRALGERLALLRTRRFWSRVFRGL*
Ga0126373_101012552	3300010048	Tropical Forest Soil	MATHCRHCLGNCNGTCLLPGGSGLCIHNPLPSMPTRKLTLLLRSRRFWRRVFWGVD*
Ga0134062_105708272	3300010337	Grasslands Soil	MPVVAHCRHCLGDCGGDCLLPGGRGLCIHKPVPKLTVGERLTLLWTRRFWRRVFWGTR*
Ga0074044_101039792	3300010343	Bog Forest Soil	MPDAGHCRHCYGDCPGTCLLPGGGGTCIHQPAHKLTVGQWLALIRTRRFWRRALWGNR*
Ga0126361_101483803	3300010876	Boreal Forest Soil	MPGAGHCRHCYGDCPGTCLLPGGEGLCIHKPAPKLTVGQRLALMRTRRFWHRILRGTR*
Ga0181531_107721881	3300014169	Bog	MPPAGHCRHCLGNCPGSCLLPGGAGLCIHQPTLKLTAGQRLAALRTRRFWRRVFWGSRPPSA*
Ga0181525_107303371	3300014654	Bog	MPPVGHCRHCLGSCPGSCLLPGGAGLCIHQPTLKLTAGQRLAALRTRRFWRRVFWGSRPPSA*
Ga0187820_10232592	3300017924	Freshwater Sediment	MPAASHCRHCYGNCPGNCLLPGGGGGCIHKPAPLTAAQRLARWRTRAFWRRVVRGPR
Ga0187807_10312982	3300017926	Freshwater Sediment	MPSAGHCRHCYGECSGSCLLPGGGGLCIHKPAPKLTVGQRLALLRTRRFWRRVVRGVQ
Ga0187806_10079174	3300017928	Freshwater Sediment	MPGAGHCRHCYGDCGGSCLLPGGGGLCIHRSAPKLTVGQRLALLRTRRFWLRVFRGVQ
Ga0187814_100831733	3300017932	Freshwater Sediment	MPSAGHCRHCYGECSGSCLLPGGGGLCIHKSAPKLTVGQRLALLRTRRFWRRVVRGVQ
Ga0187801_102795292	3300017933	Freshwater Sediment	MPSAGHCRHCYGECSGSCLLPGGGGLCIHKSAPKLTSGQRLALLRTRRFWLRIFRGVQ
Ga0187808_103377061	3300017942	Freshwater Sediment	MPSAGHCRHCYGECSGSCLLPGGGGLCIHKPAPKLTVGQRLALLRTRRFWRRVVRG
Ga0187819_103541712	3300017943	Freshwater Sediment	MPSAGHCRHCYGECSGSCLLPGGGGLCIHKSAPKLTVGQRLALLRTRRFWLRIFRGVQ
Ga0187779_102396022	3300017959	Tropical Peatland	MPAAAHCRHCYGDCSGGCLLPGGEGRCIHKPVPKRPAGERLTLLGTKRFWRRVFWGVRAGERR
Ga0187783_101334931	3300017970	Tropical Peatland	MPVMAHCRHCYGDCGGNCLLPGGAGGAGLCIHQPVPDRTFSERVTLLRTR
Ga0187783_102363242	3300017970	Tropical Peatland	MAHCRHCYGNCGGGCLLPGGLGLCIHKPVPKRTAGEWLTLLRTRRFWHRFFGGPRAGAWH
Ga0187777_113023891	3300017974	Tropical Peatland	AHCRHCYGDCGGGCLLPGGGGGCIHKPVPKRTVGERLTLLRTKRFWRRVFWGVRAGERH
Ga0187782_104136072	3300017975	Tropical Peatland	MPSTGHCRHCYGEHAGSCLLPGGGGLCIHKPYPSLTVGQRLALVRTRGFWRRVIQGVRAK
Ga0187782_104214921	3300017975	Tropical Peatland	MPVVAHCRHCFGDCGGGCLLPGGGGVCIHKPVPKRTLGEWLALLRTRRFWNRVFRGTSAGERH
Ga0187823_100925872	3300017993	Freshwater Sediment	MPAASHCRHCYGNCPGNCLLPGGGGGCIHKPAPLTAAQRLARWRTRKFWRRVVRGPR
Ga0187815_100387202	3300018001	Freshwater Sediment	MPAAGHCRHCYGDCPGNCLLPGLDGRCIHGAYPKLPVGRRLARVRTRGFWRRVLRGVNAK
Ga0187765_111320711	3300018060	Tropical Peatland	MSAARHCRHCYGDCPGTCLLPGGEGGCIHKPAPPTAGQRLARWRTRAFWRRVVHGVL
Ga0187784_101915922	3300018062	Tropical Peatland	MPSTGHCRHCYGEHAGSCLLPGGGGLCIHKPYPSLTVGQRLALVRTRGFWRRVLQGVRAK
Ga0187772_100021469	3300018085	Tropical Peatland	VAHCRHCYGDCGGRCLLPGGGGRCIHKPVPKLAVGERLTLLRTRQFWRRVFWGVRAGERH
Ga0187772_103876101	3300018085	Tropical Peatland	MPVVAHCRHCFGDCGGECLLPGGGGLCIHKPVPKRTLGERLAMLRTRRFWIRVFRGTWVGERQ
Ga0066669_109263141	3300018482	Grasslands Soil	MPVVAHCRHCLGDCGGDCLLPGGGGLCIHKPVPKLAVGERLTLLRTRRFWRRVFWGTR
Ga0210403_104703102	3300020580	Soil	MPAASHCRHCYGNCPGNCLLPGGGGGCIHKPAPLTAAQRLARWRTREFWRRVVRGPR
Ga0210403_113479022	3300020580	Soil	MPSAAHCRHCYGDCPGTCLLPGGGGLCIHKPVPKLTVGQWLAVLRTRRFWHQVLRGTR
Ga0210399_101983072	3300020581	Soil	MPSAAHCRHCYGDCPGTCLLPGGDGLCIHKPVPKLTVGQWLAVLRTRRFWHQVLRGTR
Ga0210399_104725442	3300020581	Soil	MPGAGHCRHCYGNCPGTCLLPGGGGLCIHKPVPKLTVGQRLALVRTRRFWHRVLRGTR
Ga0210401_100191367	3300020583	Soil	MPYAGHCRHCYGDCPGTCLLPGGGGLCIHQPVPKLTVGQRLTLMRTRGFWHRVLRGTR
Ga0210401_100434145	3300020583	Soil	MPYAGHCRHCYGNCPGNCLLPGGGGLCIHKPVPKLTVGQWLALVRTRRFWHQVLRGTR
Ga0210401_105508992	3300020583	Soil	MPGARHCRHCYGDCPGTCLLPGTGGLCIHKPAPKLTRGQRLALLRTRWFWHRVLHGTR
Ga0210405_111373522	3300021171	Soil	MPATGHCRHCYGNCPGSCLLPGLEGRCIHGAYPKLPVGRRLARVRTRGFWRRVLRGVNAK
Ga0210396_107992281	3300021180	Soil	RHCYGDCPGTCLLPGGGGLCIHQPVPKLTVGQRLTLMRTRGFWHRVLRGTR
Ga0210396_115484752	3300021180	Soil	YGDCPGTCLLPGGGGLCIHKPVPKLTVGQWLAVLRTRRFWHQVLRGTR
Ga0210388_100085941	3300021181	Soil	MPYAGHCRHCYGDCPGNCLLPGGAGLCIHKPVPKLTVGQWLALVGTRRFWHQVLRGTR
Ga0213875_100815972	3300021388	Plant Roots	MPAHCRHCLGDCGGDCLLPGGGERCIHRPAPRLSAGQRLALLRMRSFWHRVFWGIH
Ga0210393_100342533	3300021401	Soil	MPYAGHCRHCYGDCPGNCLLPGAGGLCIHKPVPKLTVGQWLALVGTRRFWHQVLRGTR
Ga0210383_100828114	3300021407	Soil	MPGARHCRHCYGDCPGNCLLPGTGGLCIHQPTPKLTPGQRLALLRTRWFWHRVLHGTR
Ga0210390_101859282	3300021474	Soil	MPVAGHCRHCYGDCPGNCLLPGTGGLCIHQPAPRLTVGQRLALVRTRRFWHRLLRGTR
Ga0210398_100390013	3300021477	Soil	MPYAGHCRHCYGDCPGNCLLPGGGGLCIHKPVPKLTVGQWLALVGTRRFWHQVLRGTR
Ga0210410_103981741	3300021479	Soil	MPGARHCRHCYGDCPGNCLLPGTGGLCIHQPTPKLTPGQWLALLRTRWFWHRVLHGTR
Ga0210409_101116032	3300021559	Soil	MPGAAHCRHCYGDCPGTCLIPGTGGLCIHQPAPKLTVGQRLALVRTRRFWHRVLRGTR
Ga0210409_105332973	3300021559	Soil	GEMPYAGHCRHCYGDCPGTCLLPGGGGLCIHQPVPKLTVGQRLTLMRTRGFWHRVLRGTR
Ga0126371_101829022	3300021560	Tropical Forest Soil	MPVVAHCRHCYGDCPGDCLLPGGGGLCIHRPFPKMTLTERVALLRTRRFWRRVFWGT
Ga0212123_100830402	3300022557	Iron-Sulfur Acid Spring	MPGPAHCRHCYGACPGNCLLPGTQGLCIHRPAPKLTPGQRLALLRTRRFWLRLLHGTR
Ga0222756_10755342	3300022709	Soil	CYGNCPGNCLLPGGGGLCIHKPVPKLTVGQWLALVRTRRFWHQVLRGTR
Ga0207416_10678353	3300025134	Iron-Sulfur Acid Spring	MPGPAHCRHCYGACPGNCLLPGTEGLCIHRPAPKLTPGQRLALLRTRRFWLRVLHGTR
Ga0207684_100231645	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MPVVAHCRHCLGDCGGDCLLPGGGGLCIHKPVPKRTLGERLALLRTRRFWGRGFRGPSAGERH
Ga0209648_100334315	3300026551	Grasslands Soil	MPGAGHCRHCYGDCPGSCLLPGTEGLCIHKPAPTLTVGQRLALLRTRRFWHRVLRGTR
Ga0208240_10004046	3300027030	Forest Soil	MPYAGHCRHCYGDCPGNCLLPGGAGLCIHKPVPKLTVGQWLALVRTRRFWHQVLRGTR
Ga0208199_10003412	3300027497	Peatlands Soil	MPGAGHCRHCYGDCGGGCLLPGGGGLCIHMPAPKLTAGRRLALLRTRRFWRRVFRGVQ
Ga0209248_100990561	3300027729	Bog Forest Soil	MPDAGHCRHCYGDCPGTCLLPGGGGLCIHQPVPKLTVGQRLALMRTHGFWHRVLRGTR
Ga0209773_100041505	3300027829	Bog Forest Soil	MPGAGHCRHCYGNCPGTCLLPGGGGTCIHQPAHKLTVGQWLALIRTRRFWHRALWGNR
Ga0209166_103636522	3300027857	Surface Soil	MPGPAHCRHCYGACPGNCLLPGTEGLCIHRPAPKLTPGQRLALLRTRRFWLRVLRGTR
Ga0209579_100416462	3300027869	Surface Soil	MPAAGHCRHCYGDCPGSCLLPGLDGRCIHGAYPKLPVGRRLARVRTRGFWRRVLRGVNAK
Ga0209380_100320913	3300027889	Soil	MPYAGHCRHCYGDCPGSCLLPGGAGLCIHRPVPKLTVGQRLALMRTRRFWHRVFRGTR
Ga0209415_102790022	3300027905	Peatlands Soil	MPAIGHCRHCYGDCPGSCLIPGLQGRCIHGAYPKLPVGLRLARVRTRGFWRRVLRGVNAK
Ga0209006_100509102	3300027908	Forest Soil	MRAASHCRHCYGDCPGTCLLPGGAGLCIHKPAPTLTLGQRLALWRTRRFWRRVLRGDRSVPS
Ga0308309_101010323	3300028906	Soil	MPAVSHCRHCYGNCPGNCLLPGGSGGCIHKPARLTAAQRLARWRTRAFWRRVVRGLR
Ga0308309_102472163	3300028906	Soil	MPGARHCRHCYGDCPGTCLLPGTGGLCIHQPAPKLTPGQRLALLRTRWFWHRVLHGTR
Ga0311339_100671562	3300029999	Palsa	MPPAGHCRHCLGNCPGSCLLPGGAGLCIHQPTLKLTAGQRLAALRTRRFWRRVLWGSRPPSA
Ga0302184_101800292	3300030490	Palsa	MPAVTHCRHCYGDCGGGCLLPGGGGLCIHKPVPKRTAGEWLMMLRTRQFWLRAVRGGLSAERH
Ga0265461_111382671	3300030743	Soil	MPAVTHCRHCYGDCGGGCLLPGGGGLCIHKPVPKRTAGEWLTMLRTRQFWLRAVRGGLSAERH
Ga0265770_11515902	3300030878	Soil	MPGPAHCRHCYGACPGNCLLPGTEGLCIHRPAPKLTAGQRLALLRTRRFWLRVLHGTR
Ga0310686_1025405834	3300031708	Soil	MPAASHCRHCYGNCPGNCLLPGGGGGCIHKPARLTAAQRLARWRTRAFWRRVVRGLR
Ga0310686_1137852204	3300031708	Soil	MPGARHCRHCLGDCPGNCLLPGGGGLCIHRPAPKLTVGQRLALVRTRRFWHRILRGTR
Ga0307476_111383102	3300031715	Hardwood Forest Soil	MPGAAHCRHCYGDCPGTCLIPGTVGLCIHQPVPKLSVGQRLALVRTR
Ga0307474_100782801	3300031718	Hardwood Forest Soil	MPGAAHCRHCYGDCPGTCLIPGTVGLCIHQPVPKLTVGQRLALVRTRR
Ga0307474_103701442	3300031718	Hardwood Forest Soil	MPGARHCRHCYGDCPGNCLLPGTGGLCIHQPTPKLTPGQRLALLRTRWFWHRVLYGTR
Ga0307477_101892182	3300031753	Hardwood Forest Soil	MPGAAHCRHCYGDCPGTCLIPGTVGLCIHQPVPKLTVGQRLALVRTRRFWHRVLRGTR
Ga0318554_100332652	3300031765	Soil	MPAARHCRHCYGDCPGTCLLPGGGGGCIHKPAPLTPSQRLARWRTRAFWRRVVRGVR
Ga0318557_102320692	3300031795	Soil	MPAARHCRHCYGDCPGTCLLPGGGGGCIHKPAPLTPSQRLARWRTRA
Ga0318540_105210221	3300032094	Soil	MPVVAHCRHCFGDCGGECLLPGGGGVCIHKPVPKRTLGERLALLRTRRFWSRVFRGT
Ga0311301_104577561	3300032160	Peatlands Soil	MPVVAHCRHCFGDCGGECLLPGGGGLCIHKPVPKRALGERLALLRTRRFWSRVFRGL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097742

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences