Metagenome / Metatranscriptome Family F097785

Basic Information
Family ID	F097785
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	55 residues
Representative Sequence	PRKVRTPQGRTLGKPQAAKADGKWHRKETASGERLSPETPKVRVKGWGKSPPAPW
Number of Associated Samples	98
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	44.23 %
% of genes near scaffold ends (potentially truncated)	75.96 %
% of genes from short scaffolds (< 2000 bps)	88.46 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.14

Most Common Taxonomy
Group	Bacteria (90.385 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (10.577 % of family members)
Environment Ontology (ENVO)	Unclassified (31.731 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.192 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00717	Peptidase_S24	14.42
PF01726	LexA_DNA_bind	7.69
PF00285	Citrate_synt	6.73
PF13191	AAA_16	1.92
PF00440	TetR_N	1.92
PF03840	SecG	1.92
PF00196	GerE	0.96
PF03551	PadR	0.96
PF13474	SnoaL_3	0.96
PF01523	PmbA_TldD	0.96
PF13248	zf-ribbon_3	0.96
PF10944	DUF2630	0.96
PF03480	DctP	0.96
PF01738	DLH	0.96
PF01966	HD	0.96
PF00211	Guanylate_cyc	0.96
PF03992	ABM	0.96
PF08031	BBE	0.96
PF01258	zf-dskA_traR	0.96
PF03704	BTAD	0.96
PF13520	AA_permease_2	0.96
PF13487	HD_5	0.96
PF12850	Metallophos_2	0.96
PF02861	Clp_N	0.96
PF06351	Allene_ox_cyc	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0372	Citrate synthase	Energy production and conversion [C]	6.73
COG1314	Protein translocase subunit SecG	Intracellular trafficking, secretion, and vesicular transport [U]	1.92
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.96
COG0312	Zn-dependent protease PmbA/TldA or its inactivated homolog	General function prediction only [R]	0.96
COG0542	ATP-dependent Clp protease, ATP-binding subunit ClpA	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.96
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.96
COG1734	RNA polymerase-binding transcription factor DksA	Transcription [K]	0.96
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.96
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.96
COG3629	DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain	Transcription [K]	0.96
COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	Transcription [K]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.38 %
Unclassified	root	N/A	9.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.38 %
Unclassified	root	N/A	9.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.38 %
Unclassified	root	N/A	9.62 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	42.31 %
Synergistetes	phylum	All Organisms → cellular organisms → Bacteria → Synergistetes	30.77 %
Unclassified	root	N/A	9.62 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	38.46 %
Synergistia	class	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia	30.77 %
Unclassified	root	N/A	9.62 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.92 %
Abditibacteriota	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Abditibacteriota	0.96 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Synergistales	order	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales	30.77 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	14.42 %
Unclassified	root	N/A	9.62 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.92 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %
unclassified Abditibacteriota	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Abditibacteriota → unclassified Abditibacteriota	0.96 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	0.96 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.96 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Synergistales	no rank	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales	30.77 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	13.46 %
Unclassified	root	N/A	9.62 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.92 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	0.96 %
Gaiellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales	0.96 %
Abditibacteriota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Abditibacteriota → unclassified Abditibacteriota → Abditibacteriota bacterium	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %

Name	Rank	Taxonomy	Distribution
Synergistales bacterium 54_24	species	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	30.77 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	13.46 %
Unclassified	root	N/A	9.62 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.92 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	0.96 %
Gaiellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae	0.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %
Abditibacteriota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Abditibacteriota → unclassified Abditibacteriota → Abditibacteriota bacterium	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %

Name	Rank	Taxonomy	Distribution
Synergistales bacterium 54_24	species	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	30.77 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	13.46 %
Unclassified	root	N/A	9.62 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.92 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.96 %
Gaiella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella	0.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %
Abditibacteriota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Abditibacteriota → unclassified Abditibacteriota → Abditibacteriota bacterium	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %

Name	Rank	Taxonomy	Distribution
Synergistales bacterium 54_24	species	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	30.77 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	13.46 %
Unclassified	root	N/A	9.62 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.92 %
unclassified Gaiella	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella	0.96 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %
Abditibacteriota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Abditibacteriota → unclassified Abditibacteriota → Abditibacteriota bacterium	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %

Name	Rank	Taxonomy	Distribution
Synergistales bacterium 54_24	species	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	30.77 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	13.46 %
Unclassified	root	N/A	9.62 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.92 %
Gaiella sp. SCGC AG-212-M14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	0.96 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %
Abditibacteriota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Abditibacteriota → unclassified Abditibacteriota → Abditibacteriota bacterium	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003373\|JGI25407J50210_10009282	All Organisms → cellular organisms → Bacteria	2489	Open in IMG/M
3300003990\|Ga0055455_10087479	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300005366\|Ga0070659_101183412	Not Available	676	Open in IMG/M
3300005436\|Ga0070713_100016994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	5486	Open in IMG/M
3300005440\|Ga0070705_100265477	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	1213	Open in IMG/M
3300005444\|Ga0070694_100995947	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300005530\|Ga0070679_100224101	All Organisms → cellular organisms → Bacteria	1840	Open in IMG/M
3300005544\|Ga0070686_100659227	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	830	Open in IMG/M
3300005561\|Ga0066699_10927179	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	606	Open in IMG/M
3300005563\|Ga0068855_102605684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	502	Open in IMG/M
3300005575\|Ga0066702_10585314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	671	Open in IMG/M
3300005615\|Ga0070702_100167667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1425	Open in IMG/M
3300005713\|Ga0066905_100938556	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300005719\|Ga0068861_101738062	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	617	Open in IMG/M
3300005874\|Ga0075288_1013153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1119	Open in IMG/M
3300006031\|Ga0066651_10175700	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1129	Open in IMG/M
3300006038\|Ga0075365_10257148	All Organisms → cellular organisms → Bacteria	1227	Open in IMG/M
3300006049\|Ga0075417_10393467	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300006049\|Ga0075417_10683042	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	527	Open in IMG/M
3300006058\|Ga0075432_10072575	All Organisms → cellular organisms → Bacteria	1238	Open in IMG/M
3300006175\|Ga0070712_101103954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	688	Open in IMG/M
3300006603\|Ga0074064_11703752	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	529	Open in IMG/M
3300006794\|Ga0066658_10466282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	687	Open in IMG/M
3300006852\|Ga0075433_11875532	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	514	Open in IMG/M
3300006881\|Ga0068865_101393967	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	626	Open in IMG/M
3300006903\|Ga0075426_10779799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	718	Open in IMG/M
3300009081\|Ga0105098_10744802	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	524	Open in IMG/M
3300009094\|Ga0111539_10320815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1803	Open in IMG/M
3300009146\|Ga0105091_10406112	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	679	Open in IMG/M
3300009156\|Ga0111538_11660245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	805	Open in IMG/M
3300009162\|Ga0075423_10290279	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	1714	Open in IMG/M
3300009551\|Ga0105238_10453512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1279	Open in IMG/M
3300009792\|Ga0126374_10487559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	885	Open in IMG/M
3300009800\|Ga0105069_1002124	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	1290	Open in IMG/M
3300009803\|Ga0105065_1069638	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	538	Open in IMG/M
3300009805\|Ga0105079_1020680	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	626	Open in IMG/M
3300009809\|Ga0105089_1004569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1553	Open in IMG/M
3300009812\|Ga0105067_1036588	Not Available	738	Open in IMG/M
3300009817\|Ga0105062_1099404	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	575	Open in IMG/M
3300009818\|Ga0105072_1092993	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	600	Open in IMG/M
3300009840\|Ga0126313_10234669	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1418	Open in IMG/M
3300010029\|Ga0105074_1018683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1138	Open in IMG/M
3300010037\|Ga0126304_10427351	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	886	Open in IMG/M
3300010038\|Ga0126315_10964836	Not Available	570	Open in IMG/M
3300010112\|Ga0127458_1147668	Not Available	680	Open in IMG/M
3300010137\|Ga0126323_1088352	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300010375\|Ga0105239_11378027	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	814	Open in IMG/M
3300010396\|Ga0134126_12407778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	573	Open in IMG/M
3300010399\|Ga0134127_11759228	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	696	Open in IMG/M
3300010399\|Ga0134127_13472819	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	516	Open in IMG/M
3300010399\|Ga0134127_13659815	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	504	Open in IMG/M
3300011412\|Ga0137424_1033597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	865	Open in IMG/M
3300011987\|Ga0120164_1001170	All Organisms → cellular organisms → Bacteria	8753	Open in IMG/M
3300012206\|Ga0137380_10820773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	802	Open in IMG/M
3300012209\|Ga0137379_11072780	Not Available	711	Open in IMG/M
3300012210\|Ga0137378_10061753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3386	Open in IMG/M
3300012355\|Ga0137369_10215363	Not Available	1475	Open in IMG/M
3300012356\|Ga0137371_11391345	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	515	Open in IMG/M
3300012356\|Ga0137371_11408338	Not Available	511	Open in IMG/M
3300012486\|Ga0157331_1011849	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	660	Open in IMG/M
3300012490\|Ga0157322_1045567	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	518	Open in IMG/M
3300012883\|Ga0157281_1037280	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	696	Open in IMG/M
3300012893\|Ga0157284_10086828	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	792	Open in IMG/M
3300012897\|Ga0157285_10035460	All Organisms → cellular organisms → Bacteria	1148	Open in IMG/M
3300012904\|Ga0157282_10282584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	576	Open in IMG/M
3300012905\|Ga0157296_10094832	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	803	Open in IMG/M
3300012907\|Ga0157283_10001478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3334	Open in IMG/M
3300012915\|Ga0157302_10008109	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2450	Open in IMG/M
3300012985\|Ga0164308_10903407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	778	Open in IMG/M
3300013102\|Ga0157371_11583243	Not Available	512	Open in IMG/M
3300014295\|Ga0075305_1146362	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	506	Open in IMG/M
3300014325\|Ga0163163_11095623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Abditibacteriota → unclassified Abditibacteriota → Abditibacteriota bacterium	859	Open in IMG/M
3300014326\|Ga0157380_13275901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	517	Open in IMG/M
3300015373\|Ga0132257_100111219	All Organisms → cellular organisms → Bacteria	3168	Open in IMG/M
3300018422\|Ga0190265_10042482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3895	Open in IMG/M
3300019229\|Ga0180116_1105308	Not Available	547	Open in IMG/M
3300020070\|Ga0206356_11450030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	528	Open in IMG/M
3300025549\|Ga0210094_1080572	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	603	Open in IMG/M
3300025552\|Ga0210142_1000256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12383	Open in IMG/M
3300025846\|Ga0209538_1333695	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	524	Open in IMG/M
3300025914\|Ga0207671_11247468	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	580	Open in IMG/M
3300025929\|Ga0207664_10332352	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1342	Open in IMG/M
3300025929\|Ga0207664_10777417	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300025934\|Ga0207686_11569089	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	543	Open in IMG/M
3300025942\|Ga0207689_11154391	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	652	Open in IMG/M
3300025981\|Ga0207640_12182777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	502	Open in IMG/M
3300026041\|Ga0207639_11372854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	663	Open in IMG/M
3300026118\|Ga0207675_100065136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3406	Open in IMG/M
3300026118\|Ga0207675_100574975	All Organisms → cellular organisms → Bacteria	1128	Open in IMG/M
3300027056\|Ga0209879_1065611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	578	Open in IMG/M
3300027310\|Ga0207983_1013152	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	961	Open in IMG/M
3300027475\|Ga0207607_100170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	973	Open in IMG/M
3300027490\|Ga0209899_1031158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1158	Open in IMG/M
3300027873\|Ga0209814_10490720	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	544	Open in IMG/M
3300028812\|Ga0247825_10554256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	821	Open in IMG/M
3300031226\|Ga0307497_10354084	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	689	Open in IMG/M
3300031879\|Ga0306919_11272739	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	557	Open in IMG/M
3300031908\|Ga0310900_11284578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	611	Open in IMG/M
3300032002\|Ga0307416_100521639	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → unclassified Synergistales → Synergistales bacterium 54_24	1256	Open in IMG/M
3300032075\|Ga0310890_10122661	Not Available	1673	Open in IMG/M
3300032770\|Ga0335085_10056872	All Organisms → cellular organisms → Bacteria	5248	Open in IMG/M
3300032782\|Ga0335082_10044708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4621	Open in IMG/M
3300033550\|Ga0247829_10454973	All Organisms → cellular organisms → Bacteria	1057	Open in IMG/M
3300033551\|Ga0247830_10696770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	806	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	71.15%
Host-Associated	Host-Associated	28.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.46%
Plants	Host-Associated → Plants	28.85%
Aquatic	Environmental → Aquatic	7.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.35%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.62%
Freshwater	Environmental → Aquatic → Freshwater	3.85%
Marine	Environmental → Aquatic → Marine	2.88%
Roots	Host-Associated → Plants → Roots	2.88%
Sediment	Environmental → Aquatic → Sediment	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.38%
Loam	Environmental → Terrestrial → Soil → Loam	9.62%
Sand	Environmental → Terrestrial → Soil → Sand	9.62%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.65%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.85%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.88%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.88%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.92%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.96%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.38%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	9.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.65%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.85%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.85%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.88%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.58%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	9.62%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.81%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.85%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.88%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.88%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.92%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.96%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.96%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.96%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.96%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.96%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.96%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.96%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.96%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300003990	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005874	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_404	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009800	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_30_40	Environmental	Open in IMG/M
3300009803	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_40_50	Environmental	Open in IMG/M
3300009805	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_0_10	Environmental	Open in IMG/M
3300009809	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_30_40	Environmental	Open in IMG/M
3300009812	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_50_60	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010029	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_10_20	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010112	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010137	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011412	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT620_2	Environmental	Open in IMG/M
3300011987	Permafrost microbial communities from Nunavut, Canada - A20_80cm_0M	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012486	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.120510	Environmental	Open in IMG/M
3300012490	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.4.old.040610	Host-Associated	Open in IMG/M
3300012883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1	Environmental	Open in IMG/M
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300014295	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLB_D1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300019229	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_1_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025549	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025552	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025846	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-211 (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027056	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027310	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB (SPAdes)	Environmental	Open in IMG/M
3300027475	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06.2A5a-11 (SPAdes)	Environmental	Open in IMG/M
3300027490	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.14
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.14
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097785

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25407J50210_100092825	3300003373	Tabebuia Heterophylla Rhizosphere	VTAGRTGGSRKVRTPKGRTLGKPQAAKADGKWHRKETATGETTSPETPAVRVKRWGKSPPASW*
Ga0055455_100874791	3300003990	Natural And Restored Wetlands	MAADGFGRPRKVRTPQGRALGKSQAAKADGKWNREETAGIQVPVRVKRWGKSPPASR*
Ga0070659_1011834121	3300005366	Corn Rhizosphere	GRTLGKPQAAKADGKWHRKETASGERLSPETPAVRVKRWGKSPPASR*
Ga0070713_1000169941	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VTAGRFGGPRKVRTPQGRTLGKPQAAKADGKWHRKETAGDGSRETSKVRVK
Ga0070705_1002654771	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	GRTLGKSQAAKADEQWHRKETAGSETLSPETLTVRVKRWGKSPPALWRHSG*
Ga0070694_1009959471	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	VAAGGFGRPRKVRTPQGRTLGKPQAAKADGKWNREETAGTQVSVRVKRWGKSPPAPW*
Ga0070679_1002241011	3300005530	Corn Rhizosphere	GAGRATVGLAGRMAADGLGRSRKVRTPQGRTLGKPQAAKADGKWNREETAGTQVSVRVKRWGKSPPAPW*
Ga0070686_1006592271	3300005544	Switchgrass Rhizosphere	GRTLGKPQAAKADGKWHRKETASGERLSPETPKVRVKGWGKSPPAPW*
Ga0066699_109271791	3300005561	Soil	AVRGSRKVRTPQGRTLGKPQAAKADGKWHRKETAGDGSRETSKVRVKRWGKSPPAPW*
Ga0068855_1026056841	3300005563	Corn Rhizosphere	RKVRTPQGRTLGKPQAAKADGKWHRKETASGERLSPETPAVRVKRWGKSPPASR*
Ga0066702_105853141	3300005575	Soil	VTAGRFGGPRKVRTPKGRTLGKPQAAKADGKWHRKETAGDGSRETSKVRVKRWGKSPPAPW*
Ga0070702_1001676673	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	TPQGRTLGKPQAAKADGKWHRKETASGERLSPETPKVRVKGWGKSPPAPW*
Ga0066905_1009385562	3300005713	Tropical Forest Soil	PRKVRTPQGRTLGKPQAAKADGKWNRKETATGERLSPETPAVRVKRWGKSPPASW*
Ga0068861_1017380622	3300005719	Switchgrass Rhizosphere	QGRTLGKPQAAKADGKWHRKETASGERLSPETPKVRVKGWGKSPPAPW*
Ga0075288_10131531	3300005874	Rice Paddy Soil	GRTLGKSQAAKADGKWHRKETASGERLSPETPKARVKGWGKSPPASW*
Ga0066651_101757003	3300006031	Soil	RKVRTPKGRTLGKPQAAKADGKWHRKETAGSDSPETLKVRVKRWGKSPPASWRHGG*
Ga0075365_102571483	3300006038	Populus Endosphere	VAAGGFGRPRKVRTPQGRTLGKPQAAKADGKWNREETAGTQVPVRVKRWGKSPPAPW*
Ga0075417_103934671	3300006049	Populus Rhizosphere	RTPQGRTLGKSQAAKADGKWHRKETASGEHRSPETPAVRVKRWGKSPPASW*
Ga0075417_106830421	3300006049	Populus Rhizosphere	RKVRTPKGRTLGKPQAAKADGKWNRKETATGERLSPETPAVRVKRWGKSPPASW*
Ga0075432_100725751	3300006058	Populus Rhizosphere	PRRRTLHDAGRVAAGGFGRPRKVRTPQGRTLGKPQAAKADGKWNREETAGTQVSVRVKRWGKSPPAPW*
Ga0070712_1011039543	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VTAGRFGGPRKVRTPQGRTLGKPQAAKADGKWHRKETAGDGSRETSKVRVKRWGKSPPA
Ga0074064_117037521	3300006603	Soil	RKVRTPKGRTLGKPQAAKADGKWHRKETATGELESPETPGVRVKGWGKSPPAPW*
Ga0066658_104662821	3300006794	Soil	VTAGRFGGPRKVRTPQGRTLGKPQAAKADGKWHRKETAGDGSRETSKVRVKR
Ga0075433_118755323	3300006852	Populus Rhizosphere	VTAGAARRSRKVRTPKGRTLGRTQAAKADGKWHRKETAGDGSRETSKVRVKRWGKSPPA
Ga0068865_1013939672	3300006881	Miscanthus Rhizosphere	PRKVRTPQGRTLGKPQAAKADGKWHRKETASGERLSPETPKVRVKGWGKSPPAPW*
Ga0075426_107797991	3300006903	Populus Rhizosphere	VTAGAARRSRKVRTPKGRTLGRTQAAKADGKWHRKETAGDGSRETSKVRVK
Ga0105098_107448021	3300009081	Freshwater Sediment	QGRTLGKSQAAKADGKWHRKETARGEKNSPETPRVRVKRWGKSPPASR*
Ga0111539_103208151	3300009094	Populus Rhizosphere	VTAVGVSRPRKVRTPKGRTLGKPQAAKADGKWNRKETATGERLSPETPAVRVKRWGKSPPASW
Ga0105091_104061122	3300009146	Freshwater Sediment	AAGGFGRPRKVRTPQGRTLGKSQAAKADGKWHRKETARGEKNSPETPRVRVKRWGKSPPASR*
Ga0111538_116602451	3300009156	Populus Rhizosphere	MAADRLGGPRKVRTPQGRTLGKPQAAKADGKWNREETAGRRSISPETPVARVKR
Ga0075423_102902791	3300009162	Populus Rhizosphere	PRKVRTPQGRTLGKPQAAKADGKWHRKETATGDNSPETPAVRVKRWGKSPPASW*
Ga0105238_104535121	3300009551	Corn Rhizosphere	VAAGGFGRPRKVRTPQGRTLGKPQAAKADGKWNREETAGTQVSVRVKRW
Ga0126374_104875591	3300009792	Tropical Forest Soil	KGRTLGRPQAAKADGKWHRKETATGDVISPETPAVRVKRWGKSPPAPWRHGG*
Ga0105069_10021242	3300009800	Groundwater Sand	VIASSRSRKVRTPQGRTLGKPQAAKADGKWNRKETATGERLSPETPEVRVKRWGKSPPAPW*
Ga0105065_10696382	3300009803	Groundwater Sand	VTADRGSGPRKVRTPQGRTLGKPQAAKADGKWHRKETASGERISPETPKVRVKRWGKSPPASW*
Ga0105079_10206801	3300009805	Groundwater Sand	VIAGRLDGPRKVRTPKGRTLGKPQAAKADGKWHRKETASGERLSPETPAVRVKGWGKSPPAPW*
Ga0105089_10045693	3300009809	Groundwater Sand	VIAGRASGSRKVRTPKGRTLGKPQAAKADGKWHRKETASGERLSPETPAVRVKGWGKSPPASW*
Ga0105067_10365881	3300009812	Groundwater Sand	PPSGGECPRKVRTPQGRTLGKSQAAKADGKWHRKETATGDMTLSGDAGARVKRWGKSPPAPW*
Ga0105062_10994041	3300009817	Groundwater Sand	RERPRKVRTRQGRTLGKSQAAKADGKWNREETAGGRLPARVKRWGKSPPASR*
Ga0105072_10929933	3300009818	Groundwater Sand	VTAGRASGSRKVRTPKGRTLGKPQAAKADGKWHRKETATGERLSPETPEVRVKRWGKSPPASW*
Ga0126313_102346691	3300009840	Serpentine Soil	VTAGWLRAGPRKVRTPQGRTLGKSQTAKADGKWHRKETARGENNSPETPRVRVKR
Ga0105074_10186833	3300010029	Groundwater Sand	VIAGRASGSRKVRTPKGRTLGKPQAAKADGKWHRKETASGERLSPETPEVRVKRWGKS
Ga0126304_104273512	3300010037	Serpentine Soil	RKVRTPKGRTLGKPQAAKADGKWHRKETASRVRISPETRKVRVKGWGKSPPASW*
Ga0126315_109648361	3300010038	Serpentine Soil	RTPKGRTLGKSQAAKADGKGHRKETADRRSYSGDAEARVKRWGKSPPASW*
Ga0127458_11476681	3300010112	Grasslands Soil	DRVPAGAGTRKVRTPQGRTLGKTQAAKADGKWNRKETATGEPLSPETPAVRVKRWGKSPPAPW*
Ga0126323_10883521	3300010137	Soil	RKVRTPQGRTLGKSQAAKADGKWHRKETAGGASPEAPPVRVKRWGKSPPASW*
Ga0105239_113780271	3300010375	Corn Rhizosphere	RKVRTPQGRTLGKPQAAKADGKWHRKETASGERLSPETPKVRVKGWGKSPPAPW*
Ga0134126_124077783	3300010396	Terrestrial Soil	VAAGGLDRPRKVRTPQGRTLGKPQAAKADGKWNREETAGAHASVRVKRWGK
Ga0134127_117592282	3300010399	Terrestrial Soil	RGSRKVRTPKGRTLGKPQAAKADEQWHRKETAGSETLSPETLTVRVKRWGKSPPALW*
Ga0134127_134728191	3300010399	Terrestrial Soil	RKVRTPQGRTLGKPQAAKADGKWHRKETASGERLSPETPKARVKGWGKSPPAPWRHGG*
Ga0134127_136598151	3300010399	Terrestrial Soil	GSRKVRTPKGRTLGKSQAAKADGKWHRKETATGETSLSRETPAVRVKGWGKSPPASW*
Ga0137424_10335973	3300011412	Soil	VIAGRVSGSRKVRTPKGRTLGKPQAAKADGKWHRKETASGERLSPETPAVRV
Ga0120164_10011709	3300011987	Permafrost	VTAVGRFGGRSRKVRTPQGRTLAQGQAAKADGKWNRKQTATGVSPEMPAVRVKRWGKSPPASR*
Ga0137380_108207731	3300012206	Vadose Zone Soil	RKVRTPKGRTLGKSQAAKADGKWHRKETASGISLEMPKVRVKRWGKSPPASW*
Ga0137379_110727801	3300012209	Vadose Zone Soil	VIAGGFARSRARKVRTPKGRTLGKSQAAKADGKWYRKETASGISLEMPKVRVKRWGKSPPASW*
Ga0137378_100617532	3300012210	Vadose Zone Soil	VIAGGSARSRARKVRTPKGRTLGKSQAAKADGKWYRKETASGISLEMPKVRVKRWGKSPPASW*
Ga0137369_102153631	3300012355	Vadose Zone Soil	GTRKVRTPQGRTLGKTQAAKADGKWNRKETATGEPLSPETPAVRVKGWGKSPPAPW*
Ga0137371_113913451	3300012356	Vadose Zone Soil	GSRKVRTPKGRTLGKPQAAKADGKWHRKETAGSDSPETLKVRVKGWGKSPPAPW*
Ga0137371_114083381	3300012356	Vadose Zone Soil	ARSRARKVRTPKGRTLGKSQAAKADGKWHRKETASGISLEMPKVRVKRWGKSPPASW*
Ga0157331_10118492	3300012486	Soil	MAADGLGRSRKVRTPQGRTLGKPQAAKADGKWHRKETASGETLSPETPAVRVKRWGKSPPASW*
Ga0157322_10455672	3300012490	Arabidopsis Rhizosphere	MAAGAFGRPRKVRTPQGRTLVKSQAAKADGKWNREETAGTQVSVRVKRWGKSPPAPW*
Ga0157281_10372801	3300012883	Soil	PKGRTLGKPQAAKADEKWHRKETAGSEDSPETLTVRVKRWGKSPPALW*
Ga0157284_100868281	3300012893	Soil	PKGRTLGKPQAAKADEQWHRKETAGSETLSPETLTVRVKRWGKSPPALW*
Ga0157285_100354601	3300012897	Soil	MKVRTPKGRTLGKSQAAKADGKWHRKETAGGISLEMPKVRVKRWGKSPPAPWRHGG*
Ga0157282_102825841	3300012904	Soil	VAAGGLDRPRKVRTPQGRTLGKPQAAKADGKWNREETAGAQASVRVKRW
Ga0157296_100948321	3300012905	Soil	KGRTLGKPQAAKADGKWHRKETASGERLSPETPKVRVKGWGKSPPAPW*
Ga0157283_100014783	3300012907	Soil	SRKVRTPKGRTLGKPQAAKADEQWHRKETAGSETLSPETLTVRVKRWGKSPPALW*
Ga0157302_100081091	3300012915	Soil	RTLGKPQAAKADGKWHRKETASGERLSPETPAVRVKRWGKSPPASR*
Ga0164308_109034071	3300012985	Soil	RTLGKPQAAKADGKWHRKETASGDKLSGDAGRRVKGWGKSPPAPW*
Ga0157371_115832431	3300013102	Corn Rhizosphere	PQGRTLGKPQAAKADGKWHRKETATGTLEMPGVRVKRWGKSPPASW*
Ga0075305_11463621	3300014295	Natural And Restored Wetlands	MAAGVFACPRKVRTPQGRTLEKPQAAKADGKWNREETAHRRPWVRVKRWGKSPPASW*
Ga0163163_110956231	3300014325	Switchgrass Rhizosphere	QGRTLGKPQAAKADGKWHRKETASGERLSPETPAVRVKRWGKSPPASR*
Ga0157380_132759011	3300014326	Switchgrass Rhizosphere	VTAGYGSRKVRTPKGRTLGKTQAAKADGKWHRKETASGEDSPETPAVRVKRWGKSPPASW
Ga0132257_1001112191	3300015373	Arabidopsis Rhizosphere	RTLGKSQAAKADGKWHRKETASGERLSPETPKARVKGWGKSPPAPWRHGG*
Ga0190265_100424826	3300018422	Soil	QGRTLGKSQAAKADGKWHRKETATGERISPETPAVRVKRWGKSPPAPW
Ga0180116_11053082	3300019229	Groundwater Sediment	VTAGRASGSRKVRTPKGRTLGKSQAAKADGKWHRKETASGERLSPETPVVRVKGWGKSPPASW
Ga0206356_114500303	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	VAAGGLDRPRKVRTPQGRTLGKPQAAKADGKWNREETAGAQASVRVKRWGKSPP
Ga0210094_10805722	3300025549	Natural And Restored Wetlands	RTPQGRTLGKPQAAKADGKWHRKETASGETLSPETPAVRVKGWGKSPPASW
Ga0210142_10002565	3300025552	Natural And Restored Wetlands	MAADGFGRPRKVRTPQGRALGKSQAAKADGKWNREETAGIQVPVRVKRWGKSPPASR
Ga0209538_13336952	3300025846	Arctic Peat Soil	VTASCLGSPRKVRTPQGRTLGKPQAAKADGKWHRKDTASGKPAVRVKRW
Ga0207671_112474681	3300025914	Corn Rhizosphere	TPQGRTLGKPQAAKADGKWHRKETASGEDSPETPAVRVKRWGKSPPASW
Ga0207664_103323521	3300025929	Agricultural Soil	VTAGRFGGPRKVRTPQGRTLGKPQAAKADGKWHRKETAGDGSRETSKV
Ga0207664_107774173	3300025929	Agricultural Soil	RTPWGRTLGKPQAAKADGKWHRKETAGDGSRETSKVRVKRWGKSPPAPW
Ga0207686_115690891	3300025934	Miscanthus Rhizosphere	GGFGPRKVRTPQGRTLGKPQAAKADGKWHRKETASGERLSPETPKARVKGWGKSPPAPWRHGG
Ga0207689_111543912	3300025942	Miscanthus Rhizosphere	RTPEGRTLGKPQAAKADGKWHRKETASGDNSPETPAVRVKRWGKSPPASW
Ga0207640_121827771	3300025981	Corn Rhizosphere	MAAGGLDRPRKVRTPQGRTLGKPQAAKADGKWNREETAGAHASVRVKRW
Ga0207639_113728541	3300026041	Corn Rhizosphere	VAAGGLDRPRKVRTPQGRTLGKPQAAKADGKWNREETAGAQASVRVKRWGKSPPAP
Ga0207675_1000651366	3300026118	Switchgrass Rhizosphere	RTLGKPQAAKADGKWHRKETASGERLSPETPKARVKGWGKSPPAPWRHGG
Ga0207675_1005749753	3300026118	Switchgrass Rhizosphere	RTLGKPQAAKADGKWHRKETASGERLSPETPKVRVKGWGKSPPAPW
Ga0209879_10656111	3300027056	Groundwater Sand	VIAGRASGSRKVRTPKGRTLGKPQAAKADGKWHRKETASGERLSPETPAVRVKGWGKSPPASW
Ga0207983_10131522	3300027310	Soil	VTAAALLVRAAASRKVRTPQGRTLGKPQAAKADGKWHRKETAGSDSPETLKVRVKRWGKSPPASWRHGG
Ga0207607_1001702	3300027475	Soil	VAAGGFGRPRKVRTPQGRTLGKPQAAKADGKWHRKETAGSDSPETLKVRVKRWGKSPPASWRHGG
Ga0209899_10311581	3300027490	Groundwater Sand	VTAGRASGSRKVRTPKGRTLGKPQAAKADGKWHRKETATGERLSPETPEVRVKRWGKSPPASW
Ga0209814_104907202	3300027873	Populus Rhizosphere	VARADPRKVRTPKGRTLGKPQAAKADGKWNRKETATGERLSPETPAVRVKRWGKSPPASW
Ga0247825_105542562	3300028812	Soil	VRTPQGRTLGKSQAAKADGKWHRKETATGETSSPETPAVRVKGWGKSPPAPW
Ga0307497_103540842	3300031226	Soil	KVRTPKGRTLGKSQAAKADGKWHRKETASGDNSPETPAVRVKRWGKSPPASW
Ga0306919_112727391	3300031879	Soil	RLRRERLSPRKVRTPKGRTLGRPQAAKADGQWHRKETATGDTFSPETPEVRVKRWGKSPPAPW
Ga0310900_112845781	3300031908	Soil	MAAGASGRPRKVRTPQGRTLGKSQAAKADGKWNREETAGAQASVRVKRWGKSPPAIR
Ga0307416_1005216391	3300032002	Rhizosphere	SRAGPLRRVGPRKVRTPQGRTLGKSQAAKADGKWHRKETASGERLSPETPKARVKGWGKSPPASW
Ga0310890_101226615	3300032075	Soil	MAAGASGRPRKVRTPQGRTLGKSQAAKADGKWNREETAGAQASVRVKRWGKSPPAIRG
Ga0335085_100568728	3300032770	Soil	VTAGFGPRKVRTPQGRTLGKPQAAKADGKWHRKETASGDNSPETPAVRVKGWGKS
Ga0335082_100447084	3300032782	Soil	VTAGFGPRKVRTPKGRTLGKPQAAKADGKWHRKETASGDNSPETPAVRVKGWGKSPPAPW
Ga0247829_104549731	3300033550	Soil	VTAGSVSCPRKVRTPKGRTLGKPQAAKADGKWNRKETATGERLSPETPEVRVKRWGKSPPASW
Ga0247830_106967701	3300033551	Soil	GRALGKSQAAKADGKWHRKETATGETSSPETPAVRVKGWGKSPPAPW

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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