NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F097790

Metagenome / Metatranscriptome Family F097790

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F097790
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 46 residues
Representative Sequence NYGGFLPRQGHEYAEQIKEASIQMERLRQDLVASPGHDSDERAA
Number of Associated Samples 100
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 15.38 %
% of genes from short scaffolds (< 2000 bps) 14.42 %
Associated GOLD sequencing projects 96
AlphaFold2 3D model prediction Yes
3D model pTM-score0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (84.615 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(13.462 % of family members)
Environment Ontology (ENVO) Unclassified
(25.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(45.192 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 33.33%    β-sheet: 0.00%    Coil/Unstructured: 66.67%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF07250Glyoxal_oxid_N 2.88
PF00072Response_reg 1.92
PF13360PQQ_2 1.92
PF01850PIN 1.92
PF03100CcmE 1.92
PF07690MFS_1 1.92
PF01642MM_CoA_mutase 0.96
PF00912Transgly 0.96
PF13091PLDc_2 0.96
PF01292Ni_hydr_CYTB 0.96
PF13548DUF4126 0.96
PF03551PadR 0.96
PF00583Acetyltransf_1 0.96
PF12680SnoaL_2 0.96
PF04075F420H2_quin_red 0.96
PF07228SpoIIE 0.96
PF00903Glyoxalase 0.96
PF00156Pribosyltran 0.96
PF16868NMT1_3 0.96
PF03454MoeA_C 0.96
PF04134DCC1-like 0.96
PF13466STAS_2 0.96
PF13581HATPase_c_2 0.96
PF05227CHASE3 0.96
PF00436SSB 0.96
PF13414TPR_11 0.96
PF13668Ferritin_2 0.96
PF03631Virul_fac_BrkB 0.96
PF13181TPR_8 0.96
PF09723Zn-ribbon_8 0.96
PF00857Isochorismatase 0.96
PF01902Diphthami_syn_2 0.96
PF00575S1 0.96
PF09118GO-like_E_set 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG2332Cytochrome c biogenesis protein CcmEPosttranslational modification, protein turnover, chaperones [O] 1.92
COG0303Molybdopterin Mo-transferase (molybdopterin biosynthesis)Coenzyme transport and metabolism [H] 0.96
COG0629Single-stranded DNA-binding proteinReplication, recombination and repair [L] 0.96
COG0744Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidaseCell wall/membrane/envelope biogenesis [M] 0.96
COG1295Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)Function unknown [S] 0.96
COG1335Nicotinamidase-related amidaseCoenzyme transport and metabolism [H] 0.96
COG1535Isochorismate hydrolaseSecondary metabolites biosynthesis, transport and catabolism [Q] 0.96
COG1695DNA-binding transcriptional regulator, PadR familyTranscription [K] 0.96
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 0.96
COG1846DNA-binding transcriptional regulator, MarR familyTranscription [K] 0.96
COG1884Methylmalonyl-CoA mutase, N-terminal domain/subunitLipid transport and metabolism [I] 0.96
COG1969Ni,Fe-hydrogenase I cytochrome b subunitEnergy production and conversion [C] 0.96
COG2102Diphthamide synthase (EF-2-diphthine--ammonia ligase)Translation, ribosomal structure and biogenesis [J] 0.96
COG2864Cytochrome b subunit of formate dehydrogenaseEnergy production and conversion [C] 0.96
COG2965Primosomal replication protein NReplication, recombination and repair [L] 0.96
COG3011Predicted thiol-disulfide oxidoreductase YuxK, DCC familyGeneral function prediction only [R] 0.96
COG3038Cytochrome b561Energy production and conversion [C] 0.96
COG3658Cytochrome b subunit of Ni2+-dependent hydrogenaseEnergy production and conversion [C] 0.96
COG4117Thiosulfate reductase cytochrome b subunitInorganic ion transport and metabolism [P] 0.96
COG4953Membrane carboxypeptidase/penicillin-binding protein PbpCCell wall/membrane/envelope biogenesis [M] 0.96
COG5009Membrane carboxypeptidase/penicillin-binding proteinCell wall/membrane/envelope biogenesis [M] 0.96

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A84.62 %
All OrganismsrootAll Organisms15.38 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005435|Ga0070714_101574002All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium642Open in IMG/M
3300005542|Ga0070732_10292332All Organisms → cellular organisms → Bacteria978Open in IMG/M
3300005586|Ga0066691_10926336All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium512Open in IMG/M
3300009147|Ga0114129_11465094All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium840Open in IMG/M
3300012495|Ga0157323_1021151All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium620Open in IMG/M
3300014154|Ga0134075_10534377All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium528Open in IMG/M
3300014501|Ga0182024_10543386All Organisms → cellular organisms → Bacteria1468Open in IMG/M
3300017972|Ga0187781_10000019All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis119694Open in IMG/M
3300018431|Ga0066655_10096654All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1646Open in IMG/M
3300020581|Ga0210399_10371732All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1193Open in IMG/M
3300020583|Ga0210401_10335094All Organisms → cellular organisms → Bacteria1374Open in IMG/M
3300022533|Ga0242662_10106572All Organisms → cellular organisms → Bacteria → Acidobacteria805Open in IMG/M
3300025223|Ga0207672_1008812All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium597Open in IMG/M
3300025922|Ga0207646_11589490All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium564Open in IMG/M
3300025937|Ga0207669_11931664All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium504Open in IMG/M
3300027383|Ga0209213_1077357All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium621Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil13.46%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil9.62%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil6.73%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil5.77%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere5.77%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland3.85%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere3.85%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland2.88%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil2.88%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.88%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.88%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.88%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland1.92%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.92%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.92%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere1.92%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.92%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.92%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.92%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.96%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.96%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.96%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.96%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost0.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.96%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.96%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.96%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.96%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.96%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.96%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa0.96%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.96%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere0.96%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.96%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.96%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.96%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.96%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.96%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.96%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.96%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.96%
Attine Ant Fungus GardensHost-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens0.96%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2162886012Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1Host-AssociatedOpen in IMG/M
3300001154Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1EnvironmentalOpen in IMG/M
3300001471Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2EnvironmentalOpen in IMG/M
3300002076Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3Host-AssociatedOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005459Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2Host-AssociatedOpen in IMG/M
3300005535Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaGEnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005575Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151EnvironmentalOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005840Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2Host-AssociatedOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300009700Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaGEnvironmentalOpen in IMG/M
3300009839Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaGEnvironmentalOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300011411Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ017 MetaGHost-AssociatedOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012495Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.old.040610Host-AssociatedOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300014052Permafrost microbial communities from Nunavut, Canada - A23_35cm_12MEnvironmentalOpen in IMG/M
3300014154Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015EnvironmentalOpen in IMG/M
3300014158Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018008Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40EnvironmentalOpen in IMG/M
3300018035Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10EnvironmentalOpen in IMG/M
3300018047Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10EnvironmentalOpen in IMG/M
3300018060Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018088Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MGEnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300022528Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022531Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022533Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300025223Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025412Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025507Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40 (SPAdes)EnvironmentalOpen in IMG/M
3300025711Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025899Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025914Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025937Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026354Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-BEnvironmentalOpen in IMG/M
3300027161Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF032 (SPAdes)EnvironmentalOpen in IMG/M
3300027383Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027562Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027635Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027842Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028798Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2EnvironmentalOpen in IMG/M
3300030707Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)EnvironmentalOpen in IMG/M
3300030740Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assemblyEnvironmentalOpen in IMG/M
3300030991Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
MBSR1b_0430.000068202162886012Miscanthus RhizosphereGFLPRQGHEYAEQIKEASIQMEQLRQDLVASPDRNRDAKAA
JGI12636J13339_102973513300001154Forest SoilGGFLPRQGHQYAEQMKEAAAEMERLRQDLVGSRGSEIDEKAA*
JGI12712J15308_1008600513300001471Forest SoilNYGGFLPRQGHEYAEQIQEASAEMEQLRQDLVGAPCGNGDQKAA*
JGI24749J21850_101019923300002076Corn, Switchgrass And Miscanthus RhizosphereYAEQIREASAQMERLRQDLVGNPDSDNDEKAAYDSVA*
Ga0070714_10157400213300005435Agricultural SoilAIEANARLLLDNYGGFLPRQGHEYAEQIREASIQMERLRQDLVSGPSASGNGKAA*
Ga0070705_10158047523300005440Corn, Switchgrass And Miscanthus RhizosphereQGHKYAEQIREASAQMERLRQDLVGNPDSDNDEKAAYDSVA*
Ga0070708_10175927323300005445Corn, Switchgrass And Miscanthus RhizosphereGGFLPRQGHEYAEQIKEASIQMERLRQDLVASPGHDSDEKAA*
Ga0068867_10022763913300005459Miscanthus RhizosphereARLLLDNYGGFLPRQGHEYAEQIKEASIQMEQLRQDLVASPDRNRDAKAA*
Ga0070684_10220745223300005535Corn RhizosphereGGFLPRQGHEYAEQIKEASIQMERLRQDLVASPSHTGDEKAA*
Ga0070732_1029233223300005542Surface SoilSAIEANARLLLQNYGGFLPRQGHEYAEQIQEASAQMERLRQDLVGSPGSNGDAKAA*
Ga0070664_10082553713300005564Corn RhizosphereSAIEANARLLLDNYGGFLPRQGHEYAEQIKEASIQMERLRQDLVASPSHTGDERAA*
Ga0066702_1039832323300005575SoilLENYGGFLPRQGHEYAEQIKEASAQMERLRKDLIADPASTDYEKLEYESVA*
Ga0068854_10149394113300005578Corn RhizosphereRLLLENYGSFLPRQGHEYAEQINEAAAQMERLRLDLVGSRGSESDQAAA*
Ga0066691_1092633623300005586SoilAIEASVRLLLQNYGGFLPRQGHEYAEQIREASAQMERLRQDLVGSSASNSDEKAA*
Ga0070762_1064627623300005602SoilHKYAEQIKEASAQMERLRQDLVGSPGSNNEEKAAYDSVA*
Ga0068870_1036083633300005840Miscanthus RhizosphereDNYGGFLPRQGHEYAEQIKEASIQMEQLRQDLVASPDRNRDAKAA*
Ga0070717_1046059833300006028Corn, Switchgrass And Miscanthus RhizosphereGQKYAEQIEEASAQMEQLRQDLVGSPGFKTDEIVAYDSVA*
Ga0070712_10092919423300006175Corn, Switchgrass And Miscanthus RhizosphereKTSAIEANARLLLDNYGGFLPRQGHEYAEQIKEASIQMERLRQDLVASPGHDSDEKAA*
Ga0066660_1149580813300006800SoilSRLLLDNYGGFLPRQGHEYAEQMKDTAEELERLRQNLVASQGFQNAEQAA*
Ga0068865_10039194813300006881Miscanthus RhizosphereARLLLDNYGGFLPRQGHEYAEQIKEASIQMEQLRQDLVASPDRNSGEKAA*
Ga0114129_1146509413300009147Populus RhizosphereKTSAIEANARLLLENYGGFLPRQGHEYAEQIKEASIQMERLRQDLVDSPGSNSNGKAA*
Ga0105237_1242551923300009545Corn RhizosphereGGFLPRQGHEYAEQIKEASIQMEQLRQDLVAWPDRDREEKAA*
Ga0116217_1011551513300009700Peatlands SoilYAEQIKEASAQMERLRQDLVGTPGSNNDEKAAYDSVA*
Ga0116223_1031788013300009839Peatlands SoilQNYGGFLPRQGYEYAEQIREASAQMERLRQDLVGSSASHSDEKAA*
Ga0074044_1053748513300010343Bog Forest SoilNYGGFLPRQGHEYAEQIREASAQMEQLRQDLVGSSGCNSNEKAA*
Ga0134125_1081530433300010371Terrestrial SoilLENYGGFLPRQGHEYAEQMKEAAAEMELLRQDLVGHHGSQYGDEAA*
Ga0134124_1129233613300010397Terrestrial SoilQGHEYAEQIKEASIQMERLRQDLVASPSHTGDEKAA*
Ga0134127_1140552113300010399Terrestrial SoilNYGGFLPRQGHKYAEQIREASAQMERLRQDLVGNPDSDNDEKAAYDSVA*
Ga0134122_10002873123300010400Terrestrial SoilGGFLPRQGHEYAEQIKEASIQMERLRQDLVASPGHDSDERAA*
Ga0134121_1020645923300010401Terrestrial SoilLLDNYGGFLPRQGHEYAEQIKEASIQMERLRQDLVASPGHDSDERAA*
Ga0134123_1042644323300010403Terrestrial SoilHEYAEQIKEASIQMERLRQDLVASPGHDSDERAA*
Ga0105246_1053887613300011119Miscanthus RhizosphereNYGGFLPRQGHEYAEQIKEASIQMERLRQDLVASPGHDSDERAA*
Ga0150983_1350205523300011120Forest SoilLLLENYGGFLPRQGHEYAEQMNEAAAQMERLRLDLVGSRNSGSDQQAA*
Ga0153933_110182913300011411Attine Ant Fungus GardensGHEYAEQIQEASAEMEQLRQDLVGAPCGNGDQKAA*
Ga0137383_1047465213300012199Vadose Zone SoilANADLLLQNYGGFLPRQGHEYAEQIKVAAAQMEQLRQDLVGSPGTNTDEKAA*
Ga0137362_1172906123300012205Vadose Zone SoilINTNSRLLLENYGGFLPRQGHEYAEQMKEAAAQMELLRQDLVGSRNGSDQQAA*
Ga0137378_1052519543300012210Vadose Zone SoilENYGGFLPRQGHEYAEQMKEAATQMERLRQDLVGSRSSDGDWKAA*
Ga0137385_1008303013300012359Vadose Zone SoilGFLPRQGHEYAEQIKVAAAQMEQLRQDLVGSPGTNTDEKAA*
Ga0157323_102115123300012495Arabidopsis RhizosphereSAIEVNSRLLLQNYGGFLPRQGHKYAEQIREASAQMERLRQDLVGNPDSDNDEKAAYDSVA*
Ga0137419_1183598023300012925Vadose Zone SoilHEYAEQIKEASAQMEQLRQDLVGNPGSNGDEKAA*
Ga0137419_1190188813300012925Vadose Zone SoilFLPRQGHEYAEQMKEAAAQMEQLRVDLVGSRGSGSDGKAA*
Ga0137416_1009239513300012927Vadose Zone SoilNYGGFLPRQGHEYAEQMKEAAAQMEQLRVDLVGSRGSGSDGKAA*
Ga0137404_1043890923300012929Vadose Zone SoilGGFLPRQGHEYAEQIKEAAAQMEQLRQDLVGIPGSNSSEKAA*
Ga0137407_1091972213300012930Vadose Zone SoilNARLLLDNYGGFLPRQGHEYAEQIKEASIQMERLRQDLVASPGCNSDGKAA*
Ga0164304_1018583413300012986SoilPRQGHEYAEQIQEASAEMELLRQDLLGGAGSSNKKAA*
Ga0157374_1083062523300013296Miscanthus RhizosphereLENYGSFLPRQGHEYAEQINEAAAQMERLRLDLVGSRGSESDQAAA*
Ga0120109_100610913300014052PermafrostTNSRLLLENYGGFLPRQGHEYAEQMKEAATQMERLRQDLVGNRSSDGDWKAA*
Ga0134075_1053437723300014154Grasslands SoilAIEANARLLLENYGGFLPRQGHQYAEQIKEASAQMERLRQDLVDSPGPNSNGKAA*
Ga0181521_1043739923300014158BogIETNASLLLQNYGGFLPRQGHEYAERIREASAQMERLRQDLVGSAGCNSDEKAA*
Ga0182024_1054338633300014501PermafrostYGGFLPKQGHEYAEQIKEASAEMEQLRQDLVGAPCGNGDQKAA*
Ga0157379_1009834513300014968Switchgrass RhizosphereRQGHEYAEQIKEASIQMERLRQDLVASPGHDSDERAA*
Ga0132255_10532231623300015374Arabidopsis RhizosphereRLLLQNYGGFLPRQGHEYAEQIREASAQMERLRQDLVGSPDSDNNENAEYDSVA*
Ga0182032_1148926613300016357SoilGLILQNYGGFLPRQGQKYAENIKEASAQMEQLRQDLVGGPASSSDEKAAYDAVA
Ga0187819_1045536313300017943Freshwater SedimentLENYGGFLPRQGHEYAEQIKEAAAQMERLRLDLLGRPLSNTGEKAA
Ga0187781_1000001913300017972Tropical PeatlandLQNYGGFLPRQGHAYAEQIKEASAQMERLRQDLLNGSGKSNDAKPVYESVA
Ga0187782_1036569013300017975Tropical PeatlandNYGGFLPRQGHEYAEQIKEASARMERLRQDLVGGPGSTIDEKHTFDA
Ga0187888_121066813300018008PeatlandNASLLLQNYGGFLPRQGHEYAEQIREASAQMERLRQDLVGSAGCNTDEKAA
Ga0187875_1018571313300018035PeatlandNASLLLQNYGGFLPRQGHEYAERIREASAQMERLRQDLVGSAGCNSDEKAA
Ga0187859_1030008413300018047PeatlandRQGHEYAEQIKEASAQMELLRQDLVGSTNSYRDKKAA
Ga0187765_1095633113300018060Tropical PeatlandGHEYAEQIKEASAQMERLRQDLVGSLGSNIDEKGTCDSVA
Ga0187771_1045552413300018088Tropical PeatlandRQGYEYAEQIREASAQMERLRQDLVGSSGSNSDEQAA
Ga0066655_1009665413300018431Grasslands SoilQNYGGCLTQQGNEYAEQIKEASAQMERLRQDLVDNPGSNSDQKVA
Ga0066655_1058020313300018431Grasslands SoilRQGHEYAEQIKEASIQMERLRQDLVASPGRNGDGKAA
Ga0066669_1182637313300018482Grasslands SoilRQGHEYAEQIREASAQMERLRQDLVGSSASNSDEKAA
Ga0210399_1037173233300020581SoilNTSAIESNASLLLQNYGGFLPRQGHEYAEQIKEASIQMERLRQDLVACNGANGEVKAA
Ga0210401_1033509413300020583SoilKTSAIEANARLLLDNYGGFLPRQGHEYAEQIKEASIQMERLRQDLVASPGRNSDDMAAA
Ga0210401_1039062233300020583SoilNYGDFLPWQGHEYAEQMNEAAVQMELLRQDLVSSRAS
Ga0210408_1107529813300021178SoilSRLLLENYGGFLPRQGHEYAEQMKEAAAQMEQLRQDLVGSPGSASDVQAA
Ga0210383_1012259613300021407SoilHGQEYAEQIKEAAAQVEHLRQDLVGSRDSKSEAKAA
Ga0210383_1179251823300021407SoilIIAINMNSRLLLENYGGFLPRQGHEYAEQMNEAAAQMERLRQDLVGRQVSASDENAA
Ga0210394_1004986163300021420SoilRQGHEYAEQMNEAAAQMEVLRQDLVGSPPSNGNERAA
Ga0242669_103468713300022528SoilSAIEANASLLLENYGGFLPRQGHEYAEQIREASAQMERLRQDLVASSDERAA
Ga0242660_121485913300022531SoilYGGFLPRQGHEYAEQIKEASAEMERLRQDLVGRPGANGDEKAA
Ga0242662_1010657213300022533SoilARSNTSAIEANASLLLENYGGFLPRQGHEYAEQIREASAQMERLRQDLVASSDERAA
Ga0212123_1079919623300022557Iron-Sulfur Acid SpringPRQGHEYAEQMNEAAAQMERLRQDLVGSQVSTSDENAA
Ga0207672_100881213300025223Corn, Switchgrass And Miscanthus RhizosphereNSRLLLQNYGGFLPRQGHKYAEQIREASAQMERLRQDLVGNPDSDNDEKAAYDSVA
Ga0208194_105694513300025412PeatlandQNYGGFLPRQGHEYAEQIREASAQMERLRQDLVGSAGCNTDEKAA
Ga0208188_104785813300025507PeatlandNYGGFLPRQGHEYAERIREASAQMERLRQDLVGSAGCNSDEKAA
Ga0207696_114382523300025711Switchgrass RhizosphereQGHKYAEQIREASAQMERLRQDLVGNPDSDNDEKAAYDSVA
Ga0207642_1075489723300025899Miscanthus RhizosphereAIEANARLLLDNYGGFLPRQGHEYAEQIKEASIQMEQLRQDLVASPDRNSGEKAA
Ga0207699_1078907623300025906Corn, Switchgrass And Miscanthus RhizosphereAIEANARLLLENYGGFLPRQGHEYAEQIQEASIQMERLRQDLVASPGSNCNGKAA
Ga0207671_1123111423300025914Corn RhizosphereNARLLLDNYGGFLPRQGHEYAEQIKEASIQMERLRQDLVASPSHTGDEKAA
Ga0207646_1158949013300025922Corn, Switchgrass And Miscanthus RhizosphereSAIEANARLLLDNYGGFLPRQGHEYAEQIKEASIQMEQLRQDLVASPDRNRDAKAA
Ga0207687_1088614433300025927Miscanthus RhizosphereYGGFLPRQGHEYAEQIKEASIQMERLRQDLVASPSHTGDEKAA
Ga0207669_1193166423300025937Miscanthus RhizosphereSKTSAIEANARLLLDNYGGFLPRQGHEYAEQIKEASIQMEQLRQDLVASPDRNSGEKAA
Ga0207712_1081257723300025961Switchgrass RhizosphereLPRQGHEYAEQIKEASAQMERLRQDLVGSPTSTDEEAVYDSVA
Ga0257180_102747113300026354SoilRLLLENYGGFLPRQGHEYAEQMKEAAAQMERLRQDLVGNRGSESDEKAA
Ga0208368_10508423300027161Forest SoilKSARLLLQNYGGFLPLQGQKYAEQIEEASAQMEQLRQDLVGSPGFKTDEIVAYDSVA
Ga0209213_107735713300027383Forest SoilRLLLENYGGFLPRQGHEYAEQMKEAAAQMEQLRLDLVGSRGSNGDGKAA
Ga0209735_109104613300027562Forest SoilRLLLENYGDFLPRQGHEYAEQMNEAAAQMERLRQDLVGSQVSTSDENAA
Ga0209625_115932423300027635Forest SoilIEANASLLLENYGGFLPRQGHEYAEQIREASAQMERLRQDLVASSDERAA
Ga0209580_1038641013300027842Surface SoilQGQKYAEQIEEASAQMEQLRQDLVGSPGFKTDEIVAYDSVA
Ga0268264_1135254223300028381Switchgrass RhizosphereANARLLLDNYGGFLPRQGHEYAEQIKEASIQMERLRQDLVASPGHDSDERAA
Ga0137415_1042527313300028536Vadose Zone SoilRQGHEYAEQIKEASAQMEQLRQDLVASPDCKSDAKAA
Ga0302222_1009432733300028798PalsaLPRQGHEYAEQMKEAATQMERLRQDLIGRPGSEREEKAA
Ga0310038_1017932643300030707Peatlands SoilRQGHEYAEQIKEASAQMERLRQDLVGTPGSNNDEKAAYDSVA
Ga0265460_1219218413300030740SoilLLLENYGDFLPRQGHEYAEQMNEAAAQMERLRQDLVGSQVSASDENAA
Ga0073994_1242441713300030991SoilIEGNARLLLENYGGFLPRHGHEYAEQIRKSAAQMERLRQDLLSGPSPNGDEKAA
Ga0170834_10136382923300031057Forest SoilGHEYAEQIKEASAQMEQLRQDLVGGQGSNGDEKAA
Ga0170824_12070187613300031231Forest SoilSRLLLENYGGFLPRQGHEYAEQMKEAAAQMELLRQDLVGSPGSGSDEIAA
Ga0307476_1084301433300031715Hardwood Forest SoilVAINMNSRLLLENYGDFLPWQGHEYAEQMNEAAVQMELLRQDLVSSRAS
Ga0307477_1074768913300031753Hardwood Forest SoilENYGGFLPRQGHEYAEQMNEAAAQMERLRQDLVGSRVSGSDERAA
Ga0307475_1147948913300031754Hardwood Forest SoilLLLQNYGGFLPRQGHEYAEQIQEASAQMERLRQDLVGGTGSNGDERAA
Ga0310912_1017487013300031941SoilAEQIKEASAEMERLRQDLVGGPVAVNVQEEEPAFDA

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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