Metagenome Family F097912

Basic Information
Family ID	F097912
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	42 residues
Representative Sequence	MADIQRISVQQAHAKTKANQALLVCAYEDEAKCRMLNLDGS
Number of Associated Samples	93
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	96.15 %
% of genes near scaffold ends (potentially truncated)	93.27 %
% of genes from short scaffolds (< 2000 bps)	90.38 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Most Common Taxonomy
Group	Bacteria (68.269 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (28.846 % of family members)
Environment Ontology (ENVO)	Unclassified (34.615 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.154 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.04% β-sheet: 11.59% Coil/Unstructured: 75.36%
Feature Viewer

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Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF04679	DNA_ligase_A_C	2.88
PF13561	adh_short_C2	1.92
PF01734	Patatin	1.92
PF03631	Virul_fac_BrkB	1.92
PF00069	Pkinase	1.92
PF00216	Bac_DNA_binding	1.92
PF00581	Rhodanese	0.96
PF14022	DUF4238	0.96
PF10754	DUF2569	0.96
PF02837	Glyco_hydro_2_N	0.96
PF13602	ADH_zinc_N_2	0.96
PF02614	UxaC	0.96
PF03544	TonB_C	0.96
PF02371	Transposase_20	0.96
PF13518	HTH_28	0.96
PF08388	GIIM	0.96
PF02630	SCO1-SenC	0.96
PF13414	TPR_11	0.96
PF09720	Unstab_antitox	0.96
PF07521	RMMBL	0.96
PF14534	DUF4440	0.96
PF02518	HATPase_c	0.96
PF10996	Beta-Casp	0.96
PF01068	DNA_ligase_A_M	0.96
PF01545	Cation_efflux	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	7.69
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	3.85
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	1.92
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	1.92
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	1.92
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	1.92
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	1.92
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.96
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.96
COG1225	Peroxiredoxin	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.96
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.96
COG1904	Glucuronate isomerase	Carbohydrate transport and metabolism [G]	0.96
COG1999	Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC family	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG3250	Beta-galactosidase/beta-glucuronidase	Carbohydrate transport and metabolism [G]	0.96
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.96
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.27 %
Unclassified	root	N/A	31.73 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.27 %
Unclassified	root	N/A	31.73 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.27 %
Unclassified	root	N/A	31.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.73 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	24.04 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.73 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.92 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %
Synergistetes	phylum	All Organisms → cellular organisms → Bacteria → Synergistetes	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.73 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	7.69 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.92 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %
Synergistia	class	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia	0.96 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.96 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.96 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.69 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.92 %
Candidatus Firestonebacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Firestonebacteria	1.92 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.96 %
Synergistales	order	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales	0.96 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.69 %
Candidatus Firestonebacteria bacterium RIFOXYC2_FULL_39_67	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Firestonebacteria → Candidatus Firestonebacteria bacterium RIFOXYC2_FULL_39_67	1.92 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.92 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.96 %
Synergistaceae	family	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae	0.96 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	0.96 %
Ktedonobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	0.96 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.69 %
Candidatus Firestonebacteria bacterium RIFOXYC2_FULL_39_67	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Firestonebacteria → Candidatus Firestonebacteria bacterium RIFOXYC2_FULL_39_67	1.92 %
Bryocella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Bryocella	0.96 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	0.96 %
Acetomicrobium	genus	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae → Acetomicrobium	0.96 %
Desulfuromonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae	0.96 %
Ktedonobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae	0.96 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.69 %
Candidatus Firestonebacteria bacterium RIFOXYC2_FULL_39_67	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Firestonebacteria → Candidatus Firestonebacteria bacterium RIFOXYC2_FULL_39_67	1.92 %
Bryocella elongata	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Bryocella → Bryocella elongata	0.96 %
Acetomicrobium thermoterrenum	species	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae → Acetomicrobium → Acetomicrobium thermoterrenum	0.96 %
Desulfuromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Desulfuromonas	0.96 %
Ktedonobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter	0.96 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	0.96 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.69 %
Candidatus Firestonebacteria bacterium RIFOXYC2_FULL_39_67	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Firestonebacteria → Candidatus Firestonebacteria bacterium RIFOXYC2_FULL_39_67	1.92 %
unclassified Ktedonobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter	0.96 %
unclassified Desulfuromonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Desulfuromonas → unclassified Desulfuromonas	0.96 %
Bryocella elongata	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Bryocella → Bryocella elongata	0.96 %
Acetomicrobium thermoterrenum	species	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae → Acetomicrobium → Acetomicrobium thermoterrenum	0.96 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	0.96 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.69 %
Candidatus Firestonebacteria bacterium RIFOXYC2_FULL_39_67	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Firestonebacteria → Candidatus Firestonebacteria bacterium RIFOXYC2_FULL_39_67	1.92 %
Desulfuromonas sp. TF	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Desulfuromonas → unclassified Desulfuromonas → Desulfuromonas sp. TF	0.96 %
Ktedonobacter sp. 13_2_20CM_53_11	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter → Ktedonobacter sp. 13_2_20CM_53_11	0.96 %
Bryocella elongata	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Bryocella → Bryocella elongata	0.96 %
Acetomicrobium thermoterrenum	species	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae → Acetomicrobium → Acetomicrobium thermoterrenum	0.96 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	0.96 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17295543	All Organisms → cellular organisms → Bacteria	1347	Open in IMG/M
3300000955\|JGI1027J12803_100493307	All Organisms → cellular organisms → Bacteria	3430	Open in IMG/M
3300002245\|JGIcombinedJ26739_101117351	Not Available	675	Open in IMG/M
3300004080\|Ga0062385_10315149	All Organisms → cellular organisms → Bacteria → Acidobacteria	903	Open in IMG/M
3300004092\|Ga0062389_100682565	All Organisms → cellular organisms → Bacteria → Acidobacteria	1199	Open in IMG/M
3300004268\|Ga0066398_10113467	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300005174\|Ga0066680_10655233	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300005174\|Ga0066680_10667336	All Organisms → cellular organisms → Bacteria → Proteobacteria	642	Open in IMG/M
3300005180\|Ga0066685_10763042	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Desulfuromonas → unclassified Desulfuromonas → Desulfuromonas sp. TF	658	Open in IMG/M
3300005180\|Ga0066685_11130871	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae → Acetomicrobium → Acetomicrobium thermoterrenum	511	Open in IMG/M
3300005332\|Ga0066388_103630950	Not Available	788	Open in IMG/M
3300005440\|Ga0070705_101282332	Not Available	607	Open in IMG/M
3300005445\|Ga0070708_100419052	All Organisms → cellular organisms → Bacteria	1263	Open in IMG/M
3300005445\|Ga0070708_100741907	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300005555\|Ga0066692_10985955	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300005559\|Ga0066700_10792025	All Organisms → cellular organisms → Bacteria → Proteobacteria	639	Open in IMG/M
3300005560\|Ga0066670_10820899	All Organisms → cellular organisms → Bacteria → Proteobacteria	564	Open in IMG/M
3300005586\|Ga0066691_10618616	All Organisms → cellular organisms → Bacteria → Proteobacteria	643	Open in IMG/M
3300005598\|Ga0066706_11384864	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300005602\|Ga0070762_10147338	All Organisms → cellular organisms → Bacteria	1406	Open in IMG/M
3300005764\|Ga0066903_101435825	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1298	Open in IMG/M
3300005843\|Ga0068860_101445945	All Organisms → cellular organisms → Bacteria → Acidobacteria	709	Open in IMG/M
3300005921\|Ga0070766_11200093	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300006173\|Ga0070716_100607186	Not Available	824	Open in IMG/M
3300006903\|Ga0075426_10313958	All Organisms → cellular organisms → Bacteria → Acidobacteria	1148	Open in IMG/M
3300007258\|Ga0099793_10330612	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	743	Open in IMG/M
3300009038\|Ga0099829_10625054	Not Available	895	Open in IMG/M
3300009789\|Ga0126307_10747005	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300010046\|Ga0126384_12333001	Not Available	517	Open in IMG/M
3300010159\|Ga0099796_10309775	Not Available	671	Open in IMG/M
3300011271\|Ga0137393_10363931	Not Available	1236	Open in IMG/M
3300012096\|Ga0137389_11089032	Not Available	685	Open in IMG/M
3300012198\|Ga0137364_10297685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter → Ktedonobacter sp. 13_2_20CM_53_11	1197	Open in IMG/M
3300012199\|Ga0137383_11034948	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Bryocella → Bryocella elongata	597	Open in IMG/M
3300012202\|Ga0137363_10645854	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	894	Open in IMG/M
3300012203\|Ga0137399_10062207	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Firestonebacteria → Candidatus Firestonebacteria bacterium RIFOXYC2_FULL_39_67	2767	Open in IMG/M
3300012203\|Ga0137399_10167899	Not Available	1764	Open in IMG/M
3300012205\|Ga0137362_10306628	Not Available	1375	Open in IMG/M
3300012205\|Ga0137362_10974836	Not Available	722	Open in IMG/M
3300012211\|Ga0137377_11919605	Not Available	509	Open in IMG/M
3300012361\|Ga0137360_10148410	All Organisms → cellular organisms → Bacteria	1855	Open in IMG/M
3300012362\|Ga0137361_10346176	All Organisms → cellular organisms → Bacteria → Acidobacteria	1364	Open in IMG/M
3300012582\|Ga0137358_10799308	Not Available	626	Open in IMG/M
3300012683\|Ga0137398_10776339	Not Available	669	Open in IMG/M
3300012685\|Ga0137397_11153227	Not Available	561	Open in IMG/M
3300012917\|Ga0137395_11063511	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
3300012917\|Ga0137395_11086476	Not Available	568	Open in IMG/M
3300012918\|Ga0137396_10522112	Not Available	880	Open in IMG/M
3300012922\|Ga0137394_11118373	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300012922\|Ga0137394_11142383	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300012923\|Ga0137359_11782571	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300012927\|Ga0137416_10079196	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Firestonebacteria → Candidatus Firestonebacteria bacterium RIFOXYC2_FULL_39_67	2410	Open in IMG/M
3300012929\|Ga0137404_10888648	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300012944\|Ga0137410_11758362	Not Available	546	Open in IMG/M
3300012957\|Ga0164303_10224605	Not Available	1058	Open in IMG/M
3300013308\|Ga0157375_10810036	All Organisms → cellular organisms → Bacteria → Acidobacteria	1085	Open in IMG/M
3300014157\|Ga0134078_10297913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	693	Open in IMG/M
3300015242\|Ga0137412_10561318	Not Available	868	Open in IMG/M
3300015265\|Ga0182005_1262024	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300015373\|Ga0132257_104510739	Not Available	507	Open in IMG/M
3300016404\|Ga0182037_10004154	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7907	Open in IMG/M
3300018433\|Ga0066667_12131854	Not Available	520	Open in IMG/M
3300019786\|Ga0182025_1155016	All Organisms → cellular organisms → Bacteria	2337	Open in IMG/M
3300020199\|Ga0179592_10531737	All Organisms → cellular organisms → Bacteria → Acidobacteria	501	Open in IMG/M
3300020581\|Ga0210399_10060753	All Organisms → cellular organisms → Bacteria	3049	Open in IMG/M
3300021088\|Ga0210404_10466167	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300021168\|Ga0210406_10342045	Not Available	1208	Open in IMG/M
3300021168\|Ga0210406_11004646	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300021171\|Ga0210405_10096354	All Organisms → cellular organisms → Bacteria	2334	Open in IMG/M
3300021178\|Ga0210408_11147172	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300021401\|Ga0210393_10114166	All Organisms → cellular organisms → Bacteria	2156	Open in IMG/M
3300021433\|Ga0210391_10339055	All Organisms → cellular organisms → Bacteria → Acidobacteria	1179	Open in IMG/M
3300021477\|Ga0210398_10340349	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1223	Open in IMG/M
3300021478\|Ga0210402_10396665	All Organisms → cellular organisms → Bacteria → Acidobacteria	1281	Open in IMG/M
3300021559\|Ga0210409_10492023	All Organisms → cellular organisms → Bacteria	1090	Open in IMG/M
3300022756\|Ga0222622_10293141	All Organisms → cellular organisms → Bacteria	1117	Open in IMG/M
3300025910\|Ga0207684_10499001	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300025961\|Ga0207712_11951102	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300026035\|Ga0207703_11382648	All Organisms → cellular organisms → Bacteria → Acidobacteria	677	Open in IMG/M
3300026118\|Ga0207675_100595382	All Organisms → cellular organisms → Bacteria → Acidobacteria	1108	Open in IMG/M
3300026320\|Ga0209131_1261649	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300026332\|Ga0209803_1226035	Not Available	659	Open in IMG/M
3300026557\|Ga0179587_10098475	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1766	Open in IMG/M
3300027629\|Ga0209422_1151254	Not Available	520	Open in IMG/M
3300027654\|Ga0209799_1010179	All Organisms → cellular organisms → Bacteria → Acidobacteria	2008	Open in IMG/M
3300027660\|Ga0209736_1034547	All Organisms → cellular organisms → Bacteria → Acidobacteria	1489	Open in IMG/M
3300027727\|Ga0209328_10092965	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	921	Open in IMG/M
3300027889\|Ga0209380_10766047	All Organisms → cellular organisms → Bacteria → Acidobacteria	549	Open in IMG/M
3300027895\|Ga0209624_10447668	Not Available	861	Open in IMG/M
3300028380\|Ga0268265_10270928	All Organisms → cellular organisms → Bacteria	1514	Open in IMG/M
3300028906\|Ga0308309_10450669	All Organisms → cellular organisms → Bacteria → Proteobacteria	1108	Open in IMG/M
3300031057\|Ga0170834_100466992	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300031128\|Ga0170823_12087632	All Organisms → cellular organisms → Bacteria	1545	Open in IMG/M
3300031708\|Ga0310686_100256781	Not Available	883	Open in IMG/M
3300031708\|Ga0310686_114008847	All Organisms → cellular organisms → Bacteria	7438	Open in IMG/M
3300031753\|Ga0307477_10279640	Not Available	1154	Open in IMG/M
3300031942\|Ga0310916_11648657	Not Available	520	Open in IMG/M
3300031959\|Ga0318530_10200318	All Organisms → cellular organisms → Bacteria → Acidobacteria	819	Open in IMG/M
3300031962\|Ga0307479_10235601	Not Available	1805	Open in IMG/M
3300031962\|Ga0307479_10292020	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1611	Open in IMG/M
3300031962\|Ga0307479_10431479	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1302	Open in IMG/M
3300032075\|Ga0310890_10796168	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300032180\|Ga0307471_102942394	Not Available	604	Open in IMG/M
3300032205\|Ga0307472_100100480	Not Available	1988	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.35%
Host-Associated	Host-Associated	8.65%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.46%
Plants	Host-Associated → Plants	8.65%
Aquatic	Environmental → Aquatic	2.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.46%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.85%
Freshwater	Environmental → Aquatic → Freshwater	1.92%
Sediment	Environmental → Aquatic → Sediment	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.19%
Loam	Environmental → Terrestrial → Soil → Loam	17.31%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.62%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.15%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.46%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	28.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.54%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.88%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.96%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015265	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F097912

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_01100000	2088090014	Soil	MADMAHIERIDVKQAREKAHQALLVCAYENEAKHRMF
JGI1027J12803_1004933076	3300000955	Soil	MVDIKRISAQQAHAKTKANQALLVCAYEDEAKCRMLNLDG
JGIcombinedJ26739_1011173512	3300002245	Forest Soil	MADIQGIDAQQTHTKAKSNQALLVCAYEDEAKCRRLNLEGSIYRSPASSRG*
Ga0062385_103151491	3300004080	Bog Forest Soil	MADIKRISVQQAHAKTEAKQALLVCAYEDEAKCRMLNLDGSISF
Ga0062389_1006825651	3300004092	Bog Forest Soil	MSQGGQMADIKRISVQQAHAKTEAKQALLVCAYEDEAKCRMLNLD
Ga0066398_101134671	3300004268	Tropical Forest Soil	MVDMADIERISVKQAREKAHQALLVCAYENEAKHRMSTSSIS*
Ga0066680_106552332	3300005174	Soil	MADIKRISVQQAQAKTKANQALLVCAYEDEAKCRMLNLDGSISF
Ga0066680_106673362	3300005174	Soil	MADVKRISVQQAYAKTNANQALLVCAYEDEAKCRMLNLDGSISF
Ga0066685_107630421	3300005180	Soil	MADNQRISAQQAHAKSKAKQALLACAYEDEAKCRMLNLDGSISFA
Ga0066685_111308711	3300005180	Soil	MADIKRISVQQAHAKTKANQALLVCAYEDEAKCRMLNLDGSISF
Ga0066388_1036309502	3300005332	Tropical Forest Soil	MADISDMERISAKQAREKAHQALLVCAYENEVKHRMLNLDGSVSLANF
Ga0070705_1012823322	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MADMADIERIGVKQARGKAHQALLVCAYENEAKHRMFNLDGSISL
Ga0070708_1004190524	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MADMAHIERIDVKQAREKAHQALLVCAYENEAKHRMFNLDGSISL
Ga0070708_1007419072	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MADMADIERIGVKQARGKAHQALLVCAYENEAKHRMFNR*
Ga0066692_109859552	3300005555	Soil	MADIKRISVQQAQAKTKANQALLVCAYEDEAKCRMLNLDGSISFA
Ga0066700_107920252	3300005559	Soil	MADVKRISVQQAYAKTNANQALLVCAYEDEAKCRMLNLDGSIS
Ga0066670_108208992	3300005560	Soil	MADVKRISVQQAYAKTNANQALLVCAYEDEAKCRMLNLDG
Ga0066691_106186162	3300005586	Soil	MADVKRISVQQAYAKTNANQALLVCAYEDEAKCRMLNLDGSISFA
Ga0066706_113848641	3300005598	Soil	MADIKRISVQQAYAKTKANQALLVCAYEDEAKCRMLNLDGSISFA
Ga0070762_101473383	3300005602	Soil	MADIQRISVQQAHAKTKANQALLVCAYEDEAKCRM
Ga0066903_1014358252	3300005764	Tropical Forest Soil	MADIERISVKQAREKAHQALLVCAYENEAKHRMFNLDGS
Ga0068860_1014459452	3300005843	Switchgrass Rhizosphere	MADIERIGVKQAHEKVHQALLVCAYENEAKHRMFNLD
Ga0070766_112000931	3300005921	Soil	MAEIQRISVQQAHAKTKANQALLVCAYEDEAKCQR
Ga0070716_1006071862	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MADMARISVKQARGKAHQALLVCAYENEAKHRMFNLDGSISLA
Ga0075426_103139584	3300006903	Populus Rhizosphere	MADMADIERIGVKQARGKAHQALLVCAYENEAKHRMFNLDGSISLANFRS
Ga0099793_103306122	3300007258	Vadose Zone Soil	MADIERISAQQAHAKTKANQALLVCAYEDEAKCRMLNLDGS
Ga0099829_106250541	3300009038	Vadose Zone Soil	MADIQRISAQEAHTKTKANQALLVCAYEDEAKCRMLN
Ga0126307_107470052	3300009789	Serpentine Soil	MADIERISVDEAHRRVAANQALLVCAYEDDARCRMLNLDGSMSLT
Ga0126384_123330012	3300010046	Tropical Forest Soil	MADTADIERISVKQAREKAHQALLVCAYENEAKHRILNLDGSISLANFRSRLASLPK
Ga0099796_103097752	3300010159	Vadose Zone Soil	MADIERINAQQTHTQAESNRALLVCAYEDEAKCRMLNLDG
Ga0137393_103639311	3300011271	Vadose Zone Soil	MADIERISAQQSHTKAKSNQALLVCAYEDEAKCRMLNLDGSISF
Ga0137389_110890322	3300012096	Vadose Zone Soil	MQRPTDIGRGGDMADIQRISVQQAHAKTKANQALLVCAYEDEAKCRMLNL
Ga0137364_102976851	3300012198	Vadose Zone Soil	VVDIERISAQQAHAKIKANQALLVCAYEDEAKCNMFNLEGSISFTS
Ga0137383_110349482	3300012199	Vadose Zone Soil	MADIKRISVQQAYAKTKANQALLVCAYEDEAKCRMLNLDGSIS
Ga0137363_106458543	3300012202	Vadose Zone Soil	MADIKRISVQQAYAKTKANQALLVCAYEDEAKCRML
Ga0137399_100622071	3300012203	Vadose Zone Soil	MADIKRISVQQAYAKTKANQALLVCAYEDEAKCRM
Ga0137399_101678993	3300012203	Vadose Zone Soil	MTDIERISVQQARAKTKANQVLLVCAYEDEAKCRMLNLDGSI
Ga0137362_103066281	3300012205	Vadose Zone Soil	MADIERISAQQAHTNAKSNQALLVCAYEDEAKCRMLN
Ga0137362_109748361	3300012205	Vadose Zone Soil	MADIQRISAQEAHAKTKANQALLVCAYEDEAKCRMLNL
Ga0137377_119196051	3300012211	Vadose Zone Soil	MAQGGQMAEIKRISVQQAYAKTNANQALLVCAYEDEAKCRMLN
Ga0137360_101484105	3300012361	Vadose Zone Soil	MADVERISVQQAHAKTNAKQALLVCAYEDEAKCRMFNLEGSISFTKF
Ga0137361_103461761	3300012362	Vadose Zone Soil	MAQGGQMADIKRISVQQAYAKTKANQALLVCAYEDE
Ga0137358_107993081	3300012582	Vadose Zone Soil	MADIERISVQQAQAKTKANQALLVCAYEDEAKCRMLNLEGSIS
Ga0137398_107763392	3300012683	Vadose Zone Soil	MADIERIGAQQAHTKAKSNQALLVCAYEDEAKCRML
Ga0137397_111532272	3300012685	Vadose Zone Soil	MADIERISVQQAHTKSKSNQALLVCAYEDEAKCRMLNLDDSISFTSF
Ga0137395_110635111	3300012917	Vadose Zone Soil	MADIERISAQQAHAKTKANQALLVCAYEDEAKCRMLNLDGSISFA
Ga0137395_110864761	3300012917	Vadose Zone Soil	MADIQRISAQQAHAKSKANQALLVCAYEDEAKCRMLNLDGSISFAS
Ga0137396_105221123	3300012918	Vadose Zone Soil	MADIERISAQQAHTKATSKQALLVCGYEDEAKCRMFNLDGSISFTSF
Ga0137394_111183731	3300012922	Vadose Zone Soil	MADIERISVQEAHPKTNANQALLVCAYEDEAKCRM
Ga0137394_111423831	3300012922	Vadose Zone Soil	MADIERISVQEAHRKTKATQALLVCAYEDEAKCRMLN
Ga0137359_117825712	3300012923	Vadose Zone Soil	MADIKRISVQQAHAKTKANQALLVCAYEDEAKCRMLNLDGSISFAAL
Ga0137416_100791961	3300012927	Vadose Zone Soil	MAQGGQMADIKRISVQQAYAKTKANQALLVCAYEDEAKCRM
Ga0137404_108886481	3300012929	Vadose Zone Soil	MADIERISVEEAHRKLKENQALLVCAYEDEAKCRMLDL
Ga0137410_117583621	3300012944	Vadose Zone Soil	MADIERISVQQAHTKSKSNQALLVCAYEDEAKCRMLNLDGSIS
Ga0164303_102246053	3300012957	Soil	MADMADIERISVKQARGKAHQALLVCAYENEAKHRMFNLDGTISLADFQ
Ga0157375_108100363	3300013308	Miscanthus Rhizosphere	MADMADIERISVKQARGKAHQALLVCAYENEAKHR
Ga0134078_102979131	3300014157	Grasslands Soil	MAQGGQMADVKRISVQQAYAKTNANQALLVCAYEDEAKCRMLNLDGSISF
Ga0137412_105613182	3300015242	Vadose Zone Soil	MADIERISAQQANTKAKSNQALLVCAYEDEAKCRMLN
Ga0182005_12620242	3300015265	Rhizosphere	MDVQRISVGDARRKVQAKQALLVCAYEDAAKCRMVNLE
Ga0132257_1045107391	3300015373	Arabidopsis Rhizosphere	MADIERIGVIQARGKAHQALLVCAYENEAKHRMFNLDGSISLANFRS
Ga0182037_1000415410	3300016404	Soil	MVDIERISVKQAREKAHQALLVCAYENEAKQRMFNLDGSISLA
Ga0066667_121318541	3300018433	Grasslands Soil	VPEITRIPVEEAHQKTSAGQALLVCAYDDEAKCRTFNLKG
Ga0182025_11550162	3300019786	Permafrost	MADIKRISVQQAHAKTKANQALLVCAYEDEAKCRMLNLDGSISFA
Ga0179592_105317371	3300020199	Vadose Zone Soil	MADIERISAQQAHTKAESNQALLVCAYEDEAKCRMLNLDGSI
Ga0210399_100607531	3300020581	Soil	MADIQRITVQQAYAKTKANQALLVCAYEDEAKCRKLSLDGSISFASL
Ga0210404_104661673	3300021088	Soil	MADIERISVQQAHAKANQALLVCAYEDEAKCRMLNLDGSIS
Ga0210406_103420452	3300021168	Soil	MADIQRISVQEAHAKTKAKQALLVCAYEDEAKCRK
Ga0210406_110046462	3300021168	Soil	MADIKRISVQQAHAKTKANQALLVCAYEDEAKCRM
Ga0210405_100963543	3300021171	Soil	MADIKRISVQQAHAKTNAKQALLVCAYEDEAKCRMFNLEGSLSFTKF
Ga0210408_111471721	3300021178	Soil	MADIKRISVQQAHAKTNAKQALLVCAYEDEAKCRMFNLEGSISFTK
Ga0210393_101141664	3300021401	Soil	MAEVERISVEQAYRRVKEHQALLVCAYEDEAKCRML
Ga0210391_103390551	3300021433	Soil	MADIKRISVQQAHAKTKAKQALLVCAYEDEAKCQRLNLDGSISF
Ga0210398_103403493	3300021477	Soil	MADIKRIGVQQAYAKTKANQALLVCAYEDEAKCRMLNLDGSISF
Ga0210402_103966653	3300021478	Soil	MADIQRISVQQAHAKTKANQALLVCAYEDEAKCRMLNLDGS
Ga0210409_104920231	3300021559	Soil	MADVERIGVEQAHAKANQALLVCAYEDEAKCRVFNLAGSISLAN
Ga0222622_102931411	3300022756	Groundwater Sediment	MADIERISVEDAHKKLKENQALLVCAYEDEAKCRMLNLDGS
Ga0207684_104990011	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MADIKRISVQQAYAKTKANQALLVCAYEDEAKCRMLNLDGSISFAS
Ga0207712_119511021	3300025961	Switchgrass Rhizosphere	MPDIERISVEDAHRKVGANQALLVCAYEDEAKCRAVNL
Ga0207703_113826481	3300026035	Switchgrass Rhizosphere	MADIERIGVKQAHEKVHQALLVCAYENEAKHRMFNLDDSIS
Ga0207675_1005953821	3300026118	Switchgrass Rhizosphere	MPDIERISVEEAHRKVGANQALLVCAYEDEAKCRAVNL
Ga0209131_12616492	3300026320	Grasslands Soil	MADIQRISAQEAHAKTKANQALLVCAYEDEAKCRMLNLDGSI
Ga0209803_12260351	3300026332	Soil	MANMADIERIGVKQARGKAHQALLVCAYESEAKHRMFNLDGSISLANFRS
Ga0179587_100984753	3300026557	Vadose Zone Soil	MADIKRISVQQAYAKTKANQALLVCAYEDEAKCRMLN
Ga0209422_11512542	3300027629	Forest Soil	MADIERINAQQAHTKAKSNQALLVCAYEDEAKCRMLNL
Ga0209799_10101793	3300027654	Tropical Forest Soil	MVDMADIERISVKQAREKAHQALLVCAYENEAKHRMSTSSIS
Ga0209736_10345471	3300027660	Forest Soil	VADIQRISVQEAHAKTKANQALLVCAYEDEAKCRMLNLDGSI
Ga0209328_100929651	3300027727	Forest Soil	MADIQRISAQQAHAKSKANQALLVCAYEDEAKCRMLNLDGSIS
Ga0209380_107660472	3300027889	Soil	MAEIQRISVQQAHAKTKANQALLVCAYEDEAKCQRLSLDGSIS
Ga0209624_104476682	3300027895	Forest Soil	MADIKRIGVQQAYAKTKANQALLVCAYEDEAKCRMLNLD
Ga0268265_102709281	3300028380	Switchgrass Rhizosphere	MAEIERISAEETHRKVDANQALLVCAYEDDAKCRMV
Ga0308309_104506691	3300028906	Soil	MADIQGIDAQQTHTKAKSNQALLVCAYEDEAKCRRLNLDGSISFANFKSR
Ga0170834_1004669921	3300031057	Forest Soil	MADIKRISVQQAHAKTKANQALLVCAYEDEAKCRMLNL
Ga0170823_120876321	3300031128	Forest Soil	MAEVERISVEQAYRRVKEHQGLLVCAYEDEAKCRMLNLDGSI
Ga0310686_1002567813	3300031708	Soil	MADIQRISVQQAHAKTKANQALLVCAYEDEAKCRMLNLDG
Ga0310686_1140088471	3300031708	Soil	MADIKRISVQQAHAKTKANQALLVCAYEDEAKCRMLNLDG
Ga0307477_102796402	3300031753	Hardwood Forest Soil	MADIERISAEKAHERADQALLVCAYEDEAKYRLCRVTGKVRS
Ga0310916_116486572	3300031942	Soil	MADIERISVKQAREKAHQALLVCAYDNEAKYRIANLEDSISLADFRSR
Ga0318530_102003181	3300031959	Soil	MADIERISVKQAREKANQALLVCAYDNEAKYRIVNLEGSISLAH
Ga0307479_102356013	3300031962	Hardwood Forest Soil	MADIHRISAQQAHAKSKANQALLVCAYEDEAKCRMLNLDGSISFASL
Ga0307479_102920205	3300031962	Hardwood Forest Soil	MADIKRISVQQAYAKTKANQALLVCAYEDEAKCRMLNLD
Ga0307479_104314792	3300031962	Hardwood Forest Soil	MAQGGQMADIKRISVQQAYAKTKTKTKTKTKTNQALLVCAYEDEEK
Ga0310890_107961681	3300032075	Soil	MAEIERISAEETHRKVDANQALLVCAYEDDAKCRMVNLE
Ga0307471_1029423942	3300032180	Hardwood Forest Soil	MADVKRISVQQAYAKTKANQALLVCAYEDEAKCRM
Ga0307472_1001004803	3300032205	Hardwood Forest Soil	MADIHRISAQQAHAKSKANQALLVCAYEDEAKCRMLNLERSISFAS

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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