Metagenome / Metatranscriptome Family F097944

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097944
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	61 residues
Representative Sequence	MKMKTAQGHQKRLIRAVYPNGSYKRGYHIVLTMQDVKRFTIPYWLTKWAGKLTPQTLGSY
Number of Associated Samples	63
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	58.65 %
% of genes near scaffold ends (potentially truncated)	14.42 %
% of genes from short scaffolds (< 2000 bps)	74.04 %
Associated GOLD sequencing projects	57
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (90.385 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (26.923 % of family members)
Environment Ontology (ENVO)	Unclassified (49.038 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (68.269 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.18% β-sheet: 0.00% Coil/Unstructured: 81.82%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.20
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.20
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00248	Aldo_ket_red	47.12
PF13561	adh_short_C2	25.00
PF00106	adh_short	3.85
PF01946	Thi4	1.92
PF00027	cNMP_binding	1.92
PF12697	Abhydrolase_6	1.92
PF01370	Epimerase	1.92
PF00201	UDPGT	0.96
PF00440	TetR_N	0.96
PF04632	FUSC	0.96
PF07992	Pyr_redox_2	0.96
PF06168	DUF981	0.96
PF01694	Rhomboid	0.96
PF12700	HlyD_2	0.96
PF14534	DUF4440	0.96
PF12704	MacB_PCD	0.96
PF07883	Cupin_2	0.96
PF00881	Nitroreductase	0.96
PF16925	TetR_C_13	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG1635	Thiazole synthase/Archaeal ribulose 1,5-bisphosphate synthetase	Carbohydrate transport and metabolism [G]	1.92
COG1819	UDP:flavonoid glycosyltransferase YjiC, YdhE family	Carbohydrate transport and metabolism [G]	1.92
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG1289	Uncharacterized membrane protein YccC	Function unknown [S]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.38 %
Unclassified	root	N/A	9.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.38 %
Unclassified	root	N/A	9.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.38 %
Unclassified	root	N/A	9.62 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	18.27 %
Unclassified	root	N/A	9.62 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.92 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	16.35 %
Unclassified	root	N/A	9.62 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.92 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	13.46 %
Unclassified	root	N/A	9.62 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1.92 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.92 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	1.92 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.96 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	13.46 %
Unclassified	root	N/A	9.62 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.92 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	1.92 %
Nitrosomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae	0.96 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	0.96 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.96 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.96 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	13.46 %
Unclassified	root	N/A	9.62 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	1.92 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.92 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.96 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.96 %
Nitrosospira	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosospira	0.96 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.96 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	13.46 %
Unclassified	root	N/A	9.62 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.92 %
Fimbriiglobus	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Fimbriiglobus	0.96 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	0.96 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	0.96 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	0.96 %
Nitrosospira briensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosospira → Nitrosospira briensis	0.96 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.96 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	13.46 %
Unclassified	root	N/A	9.62 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.92 %
Fimbriiglobus ruber	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Fimbriiglobus → Fimbriiglobus ruber	0.96 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	0.96 %
Stigmatella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella	0.96 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	0.96 %
Nitrosospira briensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosospira → Nitrosospira briensis	0.96 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.96 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	13.46 %
Unclassified	root	N/A	9.62 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.92 %
Stigmatella aurantiaca	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella → Stigmatella aurantiaca	0.96 %
Fimbriiglobus ruber	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Fimbriiglobus → Fimbriiglobus ruber	0.96 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	0.96 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	0.96 %
Nitrosospira briensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosospira → Nitrosospira briensis	0.96 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.96 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	13.46 %
Unclassified	root	N/A	9.62 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.92 %
Stigmatella aurantiaca DW4/3-1	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella → Stigmatella aurantiaca → Stigmatella aurantiaca DW4/3-1	0.96 %
Fimbriiglobus ruber	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Fimbriiglobus → Fimbriiglobus ruber	0.96 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	0.96 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	0.96 %
Nitrosospira briensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosospira → Nitrosospira briensis	0.96 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16553082	All Organisms → cellular organisms → Bacteria	1971	Open in IMG/M
2088090014\|GPIPI_16951699	All Organisms → cellular organisms → Bacteria	1958	Open in IMG/M
2228664021\|ICCgaii200_c0910952	Not Available	765	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0631241	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300000559\|F14TC_100731188	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	933	Open in IMG/M
3300000890\|JGI11643J12802_12052475	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300000955\|JGI1027J12803_100183565	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300000955\|JGI1027J12803_107225508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosospira → Nitrosospira briensis	1287	Open in IMG/M
3300003659\|JGI25404J52841_10144980	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	504	Open in IMG/M
3300003911\|JGI25405J52794_10000752	All Organisms → cellular organisms → Bacteria	4963	Open in IMG/M
3300004114\|Ga0062593_101781747	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300004156\|Ga0062589_100161488	All Organisms → cellular organisms → Bacteria	1556	Open in IMG/M
3300004463\|Ga0063356_100749494	All Organisms → cellular organisms → Bacteria	1353	Open in IMG/M
3300004463\|Ga0063356_102573170	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300004463\|Ga0063356_106045299	Not Available	519	Open in IMG/M
3300004479\|Ga0062595_100110695	All Organisms → cellular organisms → Bacteria	1490	Open in IMG/M
3300004479\|Ga0062595_100299303	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella → Stigmatella aurantiaca → Stigmatella aurantiaca DW4/3-1	1083	Open in IMG/M
3300004479\|Ga0062595_100314712	All Organisms → cellular organisms → Bacteria	1065	Open in IMG/M
3300004633\|Ga0066395_10682905	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300005093\|Ga0062594_101759821	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300005178\|Ga0066688_10002999	All Organisms → cellular organisms → Bacteria	7202	Open in IMG/M
3300005290\|Ga0065712_10056527	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	623	Open in IMG/M
3300005332\|Ga0066388_100000389	All Organisms → cellular organisms → Bacteria	20259	Open in IMG/M
3300005332\|Ga0066388_100001214	All Organisms → cellular organisms → Bacteria → Proteobacteria	14149	Open in IMG/M
3300005332\|Ga0066388_100065024	All Organisms → cellular organisms → Bacteria	3907	Open in IMG/M
3300005332\|Ga0066388_100193316	All Organisms → cellular organisms → Bacteria	2651	Open in IMG/M
3300005332\|Ga0066388_100208536	All Organisms → cellular organisms → Bacteria	2578	Open in IMG/M
3300005332\|Ga0066388_100272857	All Organisms → cellular organisms → Bacteria	2334	Open in IMG/M
3300005332\|Ga0066388_100528897	All Organisms → cellular organisms → Bacteria	1812	Open in IMG/M
3300005332\|Ga0066388_101264617	All Organisms → cellular organisms → Bacteria	1268	Open in IMG/M
3300005332\|Ga0066388_101287681	All Organisms → cellular organisms → Bacteria	1259	Open in IMG/M
3300005332\|Ga0066388_101475721	All Organisms → cellular organisms → Bacteria	1187	Open in IMG/M
3300005332\|Ga0066388_104864016	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	683	Open in IMG/M
3300005332\|Ga0066388_105843530	Not Available	622	Open in IMG/M
3300005332\|Ga0066388_106368449	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	595	Open in IMG/M
3300005332\|Ga0066388_107058234	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	565	Open in IMG/M
3300005332\|Ga0066388_107623694	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	543	Open in IMG/M
3300005445\|Ga0070708_101189914	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300005548\|Ga0070665_101375320	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	715	Open in IMG/M
3300005713\|Ga0066905_100032175	All Organisms → cellular organisms → Bacteria	2992	Open in IMG/M
3300005764\|Ga0066903_100060181	All Organisms → cellular organisms → Bacteria	4738	Open in IMG/M
3300005764\|Ga0066903_100260508	All Organisms → cellular organisms → Bacteria	2690	Open in IMG/M
3300005764\|Ga0066903_100343684	All Organisms → cellular organisms → Bacteria	2405	Open in IMG/M
3300005764\|Ga0066903_100416424	All Organisms → cellular organisms → Bacteria	2222	Open in IMG/M
3300005764\|Ga0066903_100547913	All Organisms → cellular organisms → Bacteria	1982	Open in IMG/M
3300005764\|Ga0066903_100669150	All Organisms → cellular organisms → Bacteria	1821	Open in IMG/M
3300005764\|Ga0066903_100694015	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1792	Open in IMG/M
3300005764\|Ga0066903_100732441	All Organisms → cellular organisms → Bacteria	1751	Open in IMG/M
3300005764\|Ga0066903_101736192	All Organisms → cellular organisms → Bacteria	1190	Open in IMG/M
3300005764\|Ga0066903_102148078	All Organisms → cellular organisms → Bacteria	1076	Open in IMG/M
3300005764\|Ga0066903_105285812	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300005937\|Ga0081455_10002999	All Organisms → cellular organisms → Bacteria	19694	Open in IMG/M
3300005937\|Ga0081455_10015513	All Organisms → cellular organisms → Bacteria → Proteobacteria	7397	Open in IMG/M
3300005983\|Ga0081540_1003323	All Organisms → cellular organisms → Bacteria	12751	Open in IMG/M
3300006028\|Ga0070717_11040866	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300006032\|Ga0066696_10097031	Not Available	1763	Open in IMG/M
3300006173\|Ga0070716_100063912	All Organisms → cellular organisms → Bacteria	2138	Open in IMG/M
3300006173\|Ga0070716_101285107	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	591	Open in IMG/M
3300006797\|Ga0066659_10001332	All Organisms → cellular organisms → Bacteria	10653	Open in IMG/M
3300006852\|Ga0075433_10298732	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1426	Open in IMG/M
3300006854\|Ga0075425_101495595	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300006854\|Ga0075425_102474231	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300006903\|Ga0075426_10496222	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300006904\|Ga0075424_101242418	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300009147\|Ga0114129_11967503	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300010047\|Ga0126382_10868496	Not Available	777	Open in IMG/M
3300010048\|Ga0126373_10889006	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300010048\|Ga0126373_13237713	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300010358\|Ga0126370_11145027	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300010362\|Ga0126377_10013650	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6450	Open in IMG/M
3300010362\|Ga0126377_10386551	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1406	Open in IMG/M
3300010362\|Ga0126377_13382096	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	516	Open in IMG/M
3300010362\|Ga0126377_13406052	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300010366\|Ga0126379_11681969	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300010366\|Ga0126379_12885389	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300010373\|Ga0134128_11555261	Not Available	728	Open in IMG/M
3300010376\|Ga0126381_100331981	All Organisms → cellular organisms → Bacteria	2095	Open in IMG/M
3300010396\|Ga0134126_10107893	All Organisms → cellular organisms → Bacteria	3415	Open in IMG/M
3300010398\|Ga0126383_12896439	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	560	Open in IMG/M
3300010398\|Ga0126383_13076639	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	545	Open in IMG/M
3300012206\|Ga0137380_10460966	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300012207\|Ga0137381_11164003	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300012957\|Ga0164303_10020174	All Organisms → cellular organisms → Bacteria	2551	Open in IMG/M
3300012960\|Ga0164301_10004940	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	4843	Open in IMG/M
3300012971\|Ga0126369_10133122	All Organisms → cellular organisms → Bacteria	2310	Open in IMG/M
3300012971\|Ga0126369_10843441	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1000	Open in IMG/M
3300016319\|Ga0182033_11010700	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300016341\|Ga0182035_10071736	All Organisms → cellular organisms → Bacteria	2440	Open in IMG/M
3300018433\|Ga0066667_10022187	All Organisms → cellular organisms → Bacteria	3403	Open in IMG/M
3300021560\|Ga0126371_10239055	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1927	Open in IMG/M
3300021560\|Ga0126371_12655666	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300022756\|Ga0222622_10512829	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300025906\|Ga0207699_10385243	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
3300025915\|Ga0207693_10423082	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
3300025922\|Ga0207646_10734602	Not Available	881	Open in IMG/M
3300027684\|Ga0209626_1143872	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	628	Open in IMG/M
3300028379\|Ga0268266_10087020	All Organisms → cellular organisms → Bacteria	2733	Open in IMG/M
3300031590\|Ga0307483_1008814	Not Available	856	Open in IMG/M
3300031720\|Ga0307469_10687136	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300031753\|Ga0307477_10230415	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Fimbriiglobus → Fimbriiglobus ruber	1285	Open in IMG/M
3300031912\|Ga0306921_11528901	Not Available	728	Open in IMG/M
3300031942\|Ga0310916_11616622	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300031962\|Ga0307479_10445239	All Organisms → cellular organisms → Bacteria	1280	Open in IMG/M
3300032180\|Ga0307471_101429914	Not Available	851	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.65%
Host-Associated	Host-Associated	16.35%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.69%
Plants	Host-Associated → Plants	16.35%
Aquatic	Environmental → Aquatic	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.69%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.69%
Sediment	Environmental → Aquatic → Sediment	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.12%
Loam	Environmental → Terrestrial → Soil → Loam	35.58%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	27.88%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.12%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.58%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.73%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	26.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	16.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.62%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.77%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.77%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.81%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.88%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003659	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300031590	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_02182600	2088090014	Soil	MKTTQRNQKRLIRAVYPNGSYKRGYHIVLNMQDAKRFAIPYWLTKWAGKLTPQTLGGY
GPIPI_01921620	2088090014	Soil	METAQRQQRRLIRAVYPNGSDKRGYHILLTMQEAKRFAIPYWLTKWTGKLTLQKLGGY
ICCgaii200_09109522	2228664021	Soil	MKMKTXXRXQKRLIRAVYPNGSYKRGYHIVLNMQDAKRFAIPYWLTKWAGKLTPQTLGGY
ICChiseqgaiiDRAFT_06312412	3300000033	Soil	MKTAQRRQKLIRAVYPNGSYKRGYHMVLTMQDAKRFAIPYWLTXWAVKLTPQTLGSY*
F14TC_1007311882	3300000559	Soil	MEASSQVEEKCTMKMKTAQRRQKLIRAVYPNGSYKRGYHMVLTMQDAKRFAIPYWLTNWAVKLTPQTLGSY*
JGI11643J12802_120524752	3300000890	Soil	MKTTQRNQKRLIRAVYPNGSYKRGYHIVLNMQDAKRFAIPYWLTKWASKLTPQTLGGY*
JGI1027J12803_1001835652	3300000955	Soil	METAQRQQRRLIRAVYPNGSDKRGYHTLLTMQDAKRFAIPYWLTKWTGKLTLQKLGGY*
JGI1027J12803_1072255083	3300000955	Soil	METAQTRQKRLIRAVYPNGSDKRGYRIVLTMQDAKRFAIPYWLAKWAGKLTPQTSTGY*
JGI25404J52841_101449802	3300003659	Tabebuia Heterophylla Rhizosphere	MKMNTAQKHQKKLIRAVYPNGSEKRGYHVILTMQNAKPLAVPHWLTKWTANVTPQTFASC
JGI25405J52794_100007523	3300003911	Tabebuia Heterophylla Rhizosphere	MKMKTAQRDQKRLIRAVYPNGSEKRGYHVILTTQNAKPLSVPRWLTKWAGNVTPQTSGSL
Ga0062593_1017817472	3300004114	Soil	MEVSSQVEKKSTMKMKTAQRRQKLIRAVYPNGSYKRGYHMVLTMQDANRFAIPYWLTNWAVKLTPQTLGSY*
Ga0062589_1001614883	3300004156	Soil	MKMKTAQRHQKRLIRAVYPNGSEKRGYHIVLTMQNAKPLAVPRWLTKWAGNVTPQTLGSY
Ga0063356_1007494943	3300004463	Arabidopsis Thaliana Rhizosphere	MKMKTAQRQQKRLIRAVYPNDSDKRGYHIILTMQNAKPLAVPRWLTKWAGNLAPQTLGSY
Ga0063356_1025731702	3300004463	Arabidopsis Thaliana Rhizosphere	MEVSSQVEKKSTMKMKTAQRRQKLIRAVYPNGSYKRGYHMVLTMHDAKRFAIPYWLTKWAVKLTPQTLGSY*
Ga0063356_1060452992	3300004463	Arabidopsis Thaliana Rhizosphere	MKMETAQRHHKRLIHAAYPNGSDKPGYHIVLTMHDAKRFAIPYWVTKWANKL
Ga0062595_1001106953	3300004479	Soil	MKMETAQRQQRRLIRAVYPNGSDKRGYHTLLTMQDAKLFAIPYWLTKWTGKLTLQKLGGY
Ga0062595_1002993031	3300004479	Soil	TMKMKTAQRRQKLIRAVYPNGSYKRGYHMVLTMHDAKRFAIPYWLTKWAVKLTPQTLGSY
Ga0062595_1003147122	3300004479	Soil	MKMETAQRHHKRLIHAAYPNGSDKPGYHIVLTMHDAKRFAIPYWVTKWANKLTPQTLEAY
Ga0066395_106829052	3300004633	Tropical Forest Soil	MKMKTVQRQQKRLIRAVYPNGSDKRGYHIIFTMQNAKSLAVPRWLTKWAGGVTPQTLGSY
Ga0062594_1017598212	3300005093	Soil	KRLIRAVYPNGRDKRGYRIFFTMRAAKQFATPDWLTRWAGKLTPQRLGGY*
Ga0066688_100029998	3300005178	Soil	VSGRKLAMKMETAQTRQKRLIRAVYQNGSDKRGYHIVLTMQDAKRFAIPYWLAKWAGKLMPQTLTGY*
Ga0065712_100565272	3300005290	Miscanthus Rhizosphere	MKMKTTQKHQKKLIRAVYPNAREKRGYHVILTMQNAKPLAVPHWLTKWTASVTPQAFASY
Ga0066388_1000003892	3300005332	Tropical Forest Soil	MKTTRRHQKRLIRAVYPNGREKRGYHIILTMQNAKPSALRHWLTKWAGNVTPQAFASY*
Ga0066388_1000012142	3300005332	Tropical Forest Soil	MRMKTAQRHQKKLIRAVYPNGGEKRGYHIILTMQDAKPLSVPRWLTKLAGNVTPETLGSY
Ga0066388_1000650246	3300005332	Tropical Forest Soil	MKMKTAQRQQKRLIRAVYPNGSDKRGYHIIFTMQNAKPLAVPRWLTKWASDVTPQTLGSY
Ga0066388_1001933162	3300005332	Tropical Forest Soil	MKIETAQTHPRRLIRAVYPNGGDKRGYRIVLTMQKCKEVFVPNWLAKWADKLTPQTLGGY
Ga0066388_1002085362	3300005332	Tropical Forest Soil	MKMKTAQRHQKRLIRAVYPNGSEKRGYHIVLTMQNAKPLAVPRWLTKWAGNATFQAFGSC
Ga0066388_1002728572	3300005332	Tropical Forest Soil	METAQRHPRKLIRAVYPNGSGKRGYHSLLAMQDAKQFAIPFWLMKWAGKLTPQKLGGY*
Ga0066388_1005288971	3300005332	Tropical Forest Soil	MKMEIAQRPKKRLIRAVYPNGSDKRGYHIILTMWDAKRFAIPYWLTRWIGTLTPLKSGGY
Ga0066388_1012646172	3300005332	Tropical Forest Soil	MKMKTAQRNQKRLIRAVYPNGSNKRGYHIILTMQNTKPLSVPRWLTKLASNVTPETLGSY
Ga0066388_1012876812	3300005332	Tropical Forest Soil	MKMKTAQGHQKRLIRAVYPNGSYKRGYHIVLTMQDVKRFTIPYWLTKWAGKLTPQTLGSY
Ga0066388_1014757212	3300005332	Tropical Forest Soil	MKMETAQTRQKRLIRAVYPNGSDKRGYHIVLTMQDGKGFAIPYWLAKWTGKLMPQTLTGY
Ga0066388_1048640161	3300005332	Tropical Forest Soil	MKMKTTQRRQKKTIRAVYPQSSDKRGYHTVLTMQDAKRFAIPYWLTKSAGKLTPQTLGGY
Ga0066388_1058435301	3300005332	Tropical Forest Soil	MKMETAHRHQRLIRAVYPNGNDKRGYQMLLTTQDANHFAISYWLTRWASKLMPQKLAGC*
Ga0066388_1063684491	3300005332	Tropical Forest Soil	VQGKFAMKIETAQTQPKRLVRAVYPNGDDKRGYHMVLTKQDVDWFSIPYWLTKWACKLIPQTL*
Ga0066388_1070582341	3300005332	Tropical Forest Soil	MEASSQVEEKSTMKMKTAQRRQKRIRAVYPNGSYKRGYHMVLAMQDAKRFAIPYWLTKWAVKLTPQTLGSY*
Ga0066388_1076236942	3300005332	Tropical Forest Soil	MKTAQRHQKRLIRAVYPNGRDKRGYHIILTMQNVKPLAVSQWLTKWAGNVTPLTFGSY*
Ga0070708_1011899141	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VSGTRLAMKMETAQTRQKRLVRAVYPNGSGKRGYHIVLTMQDAKRFAIPYWLAKWAGKLTPQTSTGY*
Ga0070665_1013753202	3300005548	Switchgrass Rhizosphere	MKMKTAQKHQKKLIRAVYPNAREKRGYHVILTMQNAKPLAVPHWLTKWTGSITPQAFASY
Ga0066905_1000321753	3300005713	Tropical Forest Soil	VSGTKLAMKMETAQTHQKRLIRAVYPNGSGKPGYHIVLTMQDAKRFAIPYWLAKWAGKLMPQALTGY*
Ga0066903_1000601813	3300005764	Tropical Forest Soil	MKMKTAQRHQKRLIRAVYPKGSEKRGYHIILTMQNAKPLSVPSWLTKWANNVTPQTSGSY
Ga0066903_1002605084	3300005764	Tropical Forest Soil	METAQRQQKRLICAVYPNGSDKPGYRIVLTMQDAKRFAISYWVTKWADKLKPQTLEAY*
Ga0066903_1003436842	3300005764	Tropical Forest Soil	MKMKTAPRHQKRLIRAVYPNGSEKRGYHIILTMQNAKPLSVPRWLTKLAGNVTPETLGSY
Ga0066903_1004164242	3300005764	Tropical Forest Soil	MKMKTAQRDQKKLIRAVYPNGSERRGYQIVLTMQDAKRFASPYWLAKWAGKLMPQTLASY
Ga0066903_1005479132	3300005764	Tropical Forest Soil	MKMKTAQRNQKRLIRAVYPNGSNKRGYHIILAMQNTKPLSVPRWLTKLAGNVTPETLGSY
Ga0066903_1006691504	3300005764	Tropical Forest Soil	MKMKTMQRHQKKTIRAVYPNSGDKRGYHIVLTMQDLKRFTIPYWLTKWAGKLTPQISGGY
Ga0066903_1006940153	3300005764	Tropical Forest Soil	MVFEYQRNLAMKMETMQKHQKRLIRAVYPNGDDKRGYHMVLSKQDAGRFSIPYWLTKWVGKLTPQTLGGY*
Ga0066903_1007324413	3300005764	Tropical Forest Soil	DEEARKLTMKMETVQRHQKRLIRAVYPKGDDKRGYHMLLTMRDAKRFAIPYWLTTWAGKVTPQNLGGY*
Ga0066903_1017361922	3300005764	Tropical Forest Soil	MKIETAQTHPRRLIRAVYPNGGDKRGYRIVLTMQKCKAVFVPNWLAKWADKLTPQTLGGY
Ga0066903_1021480782	3300005764	Tropical Forest Soil	MKMETAHRHQRLIRAVYPNGNNKRGYHMLLTTQDANRFAISYWLTRWASKLMPQKLAGY*
Ga0066903_1052858122	3300005764	Tropical Forest Soil	MKMETAQRRQKRPIRAVYPNGSYKRGYHIVLTMPEAKRFAIPYWLTKWAGKLTPHTLGGY
Ga0081455_1000299923	3300005937	Tabebuia Heterophylla Rhizosphere	MKMKTAQRDQKRLIRAVYPNGSEKRGYHVILTTQNAKPLSVLRWLTKWAGNVTPQTSGSL
Ga0081455_100155137	3300005937	Tabebuia Heterophylla Rhizosphere	MKMKTVQRHQKRLIRAVYPNGSEKRGYHIVLTMRNTKPLSVPRWLTKWANAVTPQTSGSL
Ga0081540_100332311	3300005983	Tabebuia Heterophylla Rhizosphere	MNTAQKHQKKLIRAVYPNGSEKRGYHVILTMQNAKPLAVPHWLTKWTANVTPQTFASC*
Ga0070717_110408662	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MKMETAQRRQKRVVCAVYPNGSDKRGYHIVLTMQDAKRFAIRYWLAKWAGKLMPQTLTG*
Ga0066696_100970314	3300006032	Soil	QKRLIRAVYPNGSDKRGYHIVSTMQEAKRFTIPYWLAKWAGKFMPQPLTGY*
Ga0070716_1000639123	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MKMEPAQTRQKRLIRAVYPNGNDKRGYHIVLTMQDAKRFAIPYWLAKWAGKLMPQTSTGY
Ga0070716_1012851071	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	METAQTRQKRLVRAVYPNGSDKRGYHVVLTMQDAKRFAIPYWLAKWAGKL
Ga0066659_1000133211	3300006797	Soil	VSGRKLAMKMETAQTRQKRLIRPVYQNGSDKRGYHIVLTMQDAKRFAIPYWLAKWAGKLMPQTLTGY*
Ga0075433_102987321	3300006852	Populus Rhizosphere	LIRAVYPNGSEKRGYHIVLTMQNAKPLAVPRWLTKWAGYVTPQTFGSC*
Ga0075425_1014955952	3300006854	Populus Rhizosphere	VSGTRLAMKMETAQTRQKRLVRAVYPNGSDKRGYHIVLTMQDAKRFAIPYWLAKWAGKLTPQTSTGY*
Ga0075425_1024742311	3300006854	Populus Rhizosphere	YPNGRDKRGYRIFLTMRAAKQFATPDWLTSWAGKLTPQRLGGY*
Ga0075426_104962222	3300006903	Populus Rhizosphere	MKMETAQTRQKRLVRAVYPNGSDKRGYHIVLTMQDAKRFAIPHWLAKWAGKLTPQTSTGY
Ga0075424_1012424182	3300006904	Populus Rhizosphere	MKMKTAQRHQKRLIRAVYPNGSEKRGYHIVLTMQNAKPLAVPRWLTKWAGYVTPQTFGSC
Ga0114129_119675032	3300009147	Populus Rhizosphere	METAQKQQRRLIRAVYPNRGDKRGYYIVLTMQVAKRFATPYWLKNWVGKLTPQPLGGY*
Ga0126382_108684962	3300010047	Tropical Forest Soil	MKMETAQRRHKGLIRAVYPNGSYKRGYHMVLTMQDAKRFAIPYWVRKWADKLTPQTLGSY
Ga0126373_108890061	3300010048	Tropical Forest Soil	VIGQAFKGKLAMKMKTMQRHQKKTIRAVYPNSGDKRGYHIVLTMQDLKRFTIPYWLTKWAGKLTPQISGGY*
Ga0126373_132377131	3300010048	Tropical Forest Soil	RLIRAVYPNGSDKRGYHVVLTVLGAKQFEIPNWLTKWAGKSTLQTSGGY*
Ga0126370_111450271	3300010358	Tropical Forest Soil	VIGQAFKGRLAMKMKTTQRRQKKTIRAVYPQSSDKRGYHTVLTMQDAKRFAIPYWLTKSAGKLTPQTLGGY*
Ga0126377_100136504	3300010362	Tropical Forest Soil	MKMKTAQRHQKRLIRAAYPNGSEKRGYHIILTMQNAKPLPLRHWLTKWASIVTPQASGSF
Ga0126377_103865513	3300010362	Tropical Forest Soil	METAQRHQKGLIRAVYPKGGDKRGYHMLLTMQDAKHFAIPYWLTRWAGKLTPQNLGGY*
Ga0126377_133820962	3300010362	Tropical Forest Soil	MKMKTAQRQQKRLIRAVYPNGSDKRGYHIIFTMQNAKPLAVPRWLTKWASDVTPQTLG
Ga0126377_134060521	3300010362	Tropical Forest Soil	MKTVQRQQKRLIRAVYPNGGDKPGYHIILTMRNAKPLAVSHWLTRWTSNVMP
Ga0126379_116819692	3300010366	Tropical Forest Soil	LSIKRKLAMKMKTAQRHQKRLIRAVYPNGSEKRGYHIILTMQNAKPLSVPSWLTKWANNVTPQTSGSY*
Ga0126379_128853891	3300010366	Tropical Forest Soil	MKMETVQRHQKRLIRAVYPKGDDKRGYHMLLTMRDAKRFAIPYWLTTWAGKLTPQNLGGY
Ga0134128_115552612	3300010373	Terrestrial Soil	MKMETTQRQQRRLIRAVYPNGSDKRGYHILLTMQDAKRFAIPYWLTKWTGKLTLQKLGGY
Ga0126381_1003319812	3300010376	Tropical Forest Soil	METMERHQKRVIRSVYPNGNDKRGYHMVSTKQDAERFSIPLWLTKWPGKLTPQTLGGY*
Ga0134126_101078934	3300010396	Terrestrial Soil	MKTAQKHQKKLIRAVYPNAREKRGYHVILTMQNAKPLAVPHWLTKWTASVTPQAFASY*
Ga0126383_128964392	3300010398	Tropical Forest Soil	MKMETAQTHQKRLIRAVYPNGSGKPGYHIVLTMQDAKRFAIPYWLAKWAGKLMPQALTGY
Ga0126383_130766391	3300010398	Tropical Forest Soil	MKMKTAQRRQKRLIRAVYPNSSEKRGYRIVLTTQDAKRFAIPYWLTKWAGRLT
Ga0137380_104609662	3300012206	Vadose Zone Soil	VFKGKLAMKMETAQRHQKRLIRAVYPNGSDKRGYHIVSTMQEAKRFTIPYWLAKWAGKFMPQPLTGY*
Ga0137381_111640032	3300012207	Vadose Zone Soil	VFKGKLAMKMETAQRHQKRLIRAVYSNGSDKRGYHIVSTMQEAKRFTIPYWLAKWAGKFMPQPLTGY*
Ga0164303_100201742	3300012957	Soil	MKMETAQRQQRRLIRAVYPNGSDKRGYHILLTMQDAKRFAIPYWLTKWTGKLTLQKLGGY
Ga0164301_100049403	3300012960	Soil	MKMETAQRQQRRLIRAVYPNGSDKRGYHTLLTMQDAKRFAIPYWLTKWTGKLTLQKLGGY
Ga0126369_101331222	3300012971	Tropical Forest Soil	LLRYLSVFKGKFAMKMKTAQRNQKRLIRAVYPNGSNKRGYHIILTMQNTKPLSVPRWLTKLAGNVTPETLGSY*
Ga0126369_108434412	3300012971	Tropical Forest Soil	MMKMKTTQRRQKKTIRAVYPQSSDKRGYHTVLTMQDAKRFAIPYWLTKSAGKLTPQTLGGY*
Ga0182033_110107002	3300016319	Soil	MRLNVAMKTETAQKRQTRLIRAVYPNGSDKRGYHVVLTMLGAKQFEIPNWLTKWAGKFTLQTSGGY
Ga0182035_100717362	3300016341	Soil	MKMETAQGHQKRLIRAAYPNGSDKPGYHIVFTMQDAKRYAIPYWVTKWADKLTPQTLEAY
Ga0066667_100221873	3300018433	Grasslands Soil	MKMETAQTRQKRLIRAVYQNGSDKRGYHIVLTMQDAKRFAIPYWLAKWAGKLMPQTLTGY
Ga0126371_102390554	3300021560	Tropical Forest Soil	VIGQAFKGRLAMKMKTTQRRQKKTIRAVYPQSSDKRGYHTVLTMQDAKRFAIPYWLTKSAGKLTPQTLGGY
Ga0126371_126556662	3300021560	Tropical Forest Soil	YLSVFKGKLAMKMKTAQRDQKKLIRAVYPNGSERRGYQIVLTMQDAKRFASPYWLAKWAGKLMPQTLASY
Ga0222622_105128292	3300022756	Groundwater Sediment	MKMETAQKHQKRLIRAIYPNGSDKRGYHVVLAMQDAKRFAISYWLTKWADKLMPQKLGGY
Ga0207699_103852432	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MKMETAQTRQKRLVRAVYPNGSDKRGYHIVLTMQDAKRFAIPYWLAKWAGKLTPQTSTGY
Ga0207693_104230822	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MKMEPAQTRQKRLIRAVYPNGSDKRGYHTLLTMQDAKRFAIPYWLTKWTGKLTLQKLGGY
Ga0207646_107346022	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKMETAQTRQKRLIRAVYPNGSDKGGYHIVLTMQEAKRFAIPYWLSKWAGKLMPQTSTGY
Ga0209626_11438722	3300027684	Forest Soil	METAQRHQKRLIRAVYPNGSDKRGYHIVLTMQDAKRFTIPYWLAKWAGKFMPQQLPGYLKGRNANESNE
Ga0268266_100870202	3300028379	Switchgrass Rhizosphere	MKTAQKHQKKLIRAVYPNAREKRGYHVILTMQNAKPLAVPHWLTKWTGSITPQAFASY
Ga0307483_10088141	3300031590	Hardwood Forest Soil	METAQRHRKKLIRAVYPNGGDKRGYRVVLTMWDAKRFAIPYWLTKWADKLRPVKSGAY
Ga0307469_106871362	3300031720	Hardwood Forest Soil	MKMETAQRHQKRLIRAVYPNGSHKRGYHILLTMQDAKQFAMPYWLTKWAGNLTPQKLEGY
Ga0307477_102304152	3300031753	Hardwood Forest Soil	METAQRHRKKLIRAVYPNGGDKRGYRVVVTMSDAKRFAIPYWLTKWADKLTPVKSGAY
Ga0306921_115289012	3300031912	Soil	MKMETAQGHQKRLIRAAYPNGSDKPGYHIVFTMQDAKRFAIPYWVTKWADKLTPQTLEAY
Ga0310916_116166222	3300031942	Soil	MKMETAQGHQKRLIRAAYPNGSDKPGYHIVLTMHDAKRFAIPYGVTKWADKLTPQTLEAY
Ga0307479_104452392	3300031962	Hardwood Forest Soil	MKMETAQRHRKKLIRAVYPNGGDKRGYRVVVTMSGAKRFAIPYWLTKWADKLTPVKSGAY
Ga0307471_1014299142	3300032180	Hardwood Forest Soil	VFKGKLAMKMETAQRHQKRLIRAVYPNGSDKRGYHIVSTMQDAKRFTIPYWLAKCAGKFMAQPLTGC

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097944

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences