Metagenome / Metatranscriptome Family F097956

Basic Information
Family ID	F097956
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	90 residues
Representative Sequence	MSRYQSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTAPER
Number of Associated Samples	97
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	74.04 %
% of genes near scaffold ends (potentially truncated)	32.69 %
% of genes from short scaffolds (< 2000 bps)	81.73 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (57.692 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere (8.654 % of family members)
Environment Ontology (ENVO)	Unclassified (51.923 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (75.962 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.17% β-sheet: 22.83% Coil/Unstructured: 50.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF04392	ABC_sub_bind	5.77
PF07369	DUF1488	5.77
PF00378	ECH_1	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	5.77

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
All Organisms	root	All Organisms	42.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
cellular organisms	root	All Organisms → cellular organisms	42.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	39.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	23.08 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.19 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	12.50 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	5.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	5.77 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	2.88 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	5.77 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	2.88 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.69 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	5.77 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	2.88 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005148\|Ga0066819_1003123	Not Available	925	Open in IMG/M
3300005162\|Ga0066814_10046219	Not Available	704	Open in IMG/M
3300005165\|Ga0066869_10085632	Not Available	610	Open in IMG/M
3300005329\|Ga0070683_100189529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1952	Open in IMG/M
3300005331\|Ga0070670_100947526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	781	Open in IMG/M
3300005331\|Ga0070670_101911193	Not Available	547	Open in IMG/M
3300005334\|Ga0068869_100832481	Not Available	795	Open in IMG/M
3300005338\|Ga0068868_100507124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	1058	Open in IMG/M
3300005339\|Ga0070660_101944459	Not Available	501	Open in IMG/M
3300005340\|Ga0070689_100293109	All Organisms → cellular organisms → Bacteria → Proteobacteria	1352	Open in IMG/M
3300005344\|Ga0070661_100878755	Not Available	739	Open in IMG/M
3300005347\|Ga0070668_100610901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	955	Open in IMG/M
3300005353\|Ga0070669_101501478	Not Available	586	Open in IMG/M
3300005354\|Ga0070675_100992643	Not Available	771	Open in IMG/M
3300005365\|Ga0070688_101749172	Not Available	510	Open in IMG/M
3300005366\|Ga0070659_100129571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2048	Open in IMG/M
3300005435\|Ga0070714_100215038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1764	Open in IMG/M
3300005439\|Ga0070711_101158775	Not Available	667	Open in IMG/M
3300005441\|Ga0070700_101255226	Not Available	621	Open in IMG/M
3300005457\|Ga0070662_101141529	Not Available	669	Open in IMG/M
3300005535\|Ga0070684_100263641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1576	Open in IMG/M
3300005548\|Ga0070665_102013834	Not Available	582	Open in IMG/M
3300005564\|Ga0070664_100062868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3165	Open in IMG/M
3300005718\|Ga0068866_10223772	Not Available	1137	Open in IMG/M
3300005841\|Ga0068863_101674464	Not Available	646	Open in IMG/M
3300006028\|Ga0070717_10013667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6228	Open in IMG/M
3300006173\|Ga0070716_100000314	All Organisms → cellular organisms → Bacteria	19473	Open in IMG/M
3300006854\|Ga0075425_100038311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5344	Open in IMG/M
3300006914\|Ga0075436_100251905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1257	Open in IMG/M
3300006953\|Ga0074063_12026022	All Organisms → cellular organisms → Bacteria → Proteobacteria	1091	Open in IMG/M
3300006954\|Ga0079219_10917601	Not Available	711	Open in IMG/M
3300009094\|Ga0111539_10193869	All Organisms → cellular organisms → Bacteria → Proteobacteria	2370	Open in IMG/M
3300009098\|Ga0105245_11782041	Not Available	668	Open in IMG/M
3300009162\|Ga0075423_10940202	All Organisms → cellular organisms → Bacteria → Proteobacteria	917	Open in IMG/M
3300009551\|Ga0105238_11653145	Not Available	671	Open in IMG/M
3300010371\|Ga0134125_11616035	Not Available	705	Open in IMG/M
3300010375\|Ga0105239_10626477	Not Available	1228	Open in IMG/M
3300010396\|Ga0134126_10758628	Not Available	1099	Open in IMG/M
3300010400\|Ga0134122_11598994	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300010401\|Ga0134121_10240297	All Organisms → cellular organisms → Bacteria → Proteobacteria	1581	Open in IMG/M
3300010403\|Ga0134123_10462994	Not Available	1182	Open in IMG/M
3300011119\|Ga0105246_12443020	Not Available	513	Open in IMG/M
3300012477\|Ga0157336_1021795	Not Available	585	Open in IMG/M
3300012512\|Ga0157327_1046134	Not Available	604	Open in IMG/M
3300012513\|Ga0157326_1090191	Not Available	515	Open in IMG/M
3300012514\|Ga0157330_1078399	Not Available	525	Open in IMG/M
3300012515\|Ga0157338_1091183	Not Available	509	Open in IMG/M
3300012517\|Ga0157354_1030010	Not Available	687	Open in IMG/M
3300012955\|Ga0164298_10655413	Not Available	730	Open in IMG/M
3300012961\|Ga0164302_10127438	Not Available	1460	Open in IMG/M
3300012984\|Ga0164309_10042518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	2582	Open in IMG/M
3300012986\|Ga0164304_10406355	All Organisms → cellular organisms → Bacteria → Proteobacteria	969	Open in IMG/M
3300013105\|Ga0157369_11606575	Not Available	661	Open in IMG/M
3300013296\|Ga0157374_10944294	Not Available	881	Open in IMG/M
3300013297\|Ga0157378_10095110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2713	Open in IMG/M
3300013306\|Ga0163162_10892625	All Organisms → cellular organisms → Bacteria → Proteobacteria	1002	Open in IMG/M
3300013308\|Ga0157375_11491212	All Organisms → cellular organisms → Bacteria → Proteobacteria	798	Open in IMG/M
3300014325\|Ga0163163_10461472	All Organisms → cellular organisms → Bacteria → Proteobacteria	1331	Open in IMG/M
3300014325\|Ga0163163_11381771	All Organisms → cellular organisms → Bacteria → Proteobacteria	766	Open in IMG/M
3300014745\|Ga0157377_10918095	Not Available	656	Open in IMG/M
3300014968\|Ga0157379_10539444	Not Available	1084	Open in IMG/M
3300015372\|Ga0132256_100257079	All Organisms → cellular organisms → Bacteria → Proteobacteria	1818	Open in IMG/M
3300015374\|Ga0132255_100300159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	2312	Open in IMG/M
3300015374\|Ga0132255_101543910	Not Available	1005	Open in IMG/M
3300015374\|Ga0132255_104990886	Not Available	562	Open in IMG/M
3300015374\|Ga0132255_105425946	Not Available	540	Open in IMG/M
3300017792\|Ga0163161_10737091	Not Available	823	Open in IMG/M
3300025315\|Ga0207697_10444378	Not Available	575	Open in IMG/M
3300025899\|Ga0207642_10170594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	1177	Open in IMG/M
3300025900\|Ga0207710_10403699	Not Available	702	Open in IMG/M
3300025901\|Ga0207688_10068560	All Organisms → cellular organisms → Bacteria	2009	Open in IMG/M
3300025903\|Ga0207680_10010146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4700	Open in IMG/M
3300025905\|Ga0207685_10007753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	3014	Open in IMG/M
3300025911\|Ga0207654_10120087	All Organisms → cellular organisms → Bacteria → Proteobacteria	1649	Open in IMG/M
3300025916\|Ga0207663_10814557	Not Available	744	Open in IMG/M
3300025916\|Ga0207663_11709389	Not Available	506	Open in IMG/M
3300025918\|Ga0207662_11105195	Not Available	564	Open in IMG/M
3300025919\|Ga0207657_10790174	Not Available	734	Open in IMG/M
3300025920\|Ga0207649_10626440	All Organisms → cellular organisms → Bacteria → Proteobacteria	829	Open in IMG/M
3300025928\|Ga0207700_10008764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6283	Open in IMG/M
3300025928\|Ga0207700_10021449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4410	Open in IMG/M
3300025933\|Ga0207706_10424985	Not Available	1151	Open in IMG/M
3300025936\|Ga0207670_11170171	Not Available	650	Open in IMG/M
3300025937\|Ga0207669_10906018	Not Available	737	Open in IMG/M
3300025945\|Ga0207679_10266113	All Organisms → cellular organisms → Bacteria → Proteobacteria	1464	Open in IMG/M
3300025961\|Ga0207712_10800132	All Organisms → cellular organisms → Bacteria → Proteobacteria	829	Open in IMG/M
3300025972\|Ga0207668_10244384	All Organisms → cellular organisms → Bacteria → Proteobacteria	1454	Open in IMG/M
3300026041\|Ga0207639_10397642	Not Available	1241	Open in IMG/M
3300026078\|Ga0207702_10094804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2621	Open in IMG/M
3300026089\|Ga0207648_10100499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	2534	Open in IMG/M
3300026095\|Ga0207676_12071572	Not Available	567	Open in IMG/M
3300027288\|Ga0208525_1038381	Not Available	592	Open in IMG/M
3300028380\|Ga0268265_10945703	Not Available	849	Open in IMG/M
3300028381\|Ga0268264_10647476	Not Available	1045	Open in IMG/M
3300031170\|Ga0307498_10004134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	2473	Open in IMG/M
3300031740\|Ga0307468_100120761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1612	Open in IMG/M
3300031847\|Ga0310907_10184192	Not Available	986	Open in IMG/M
3300031940\|Ga0310901_10589941	Not Available	508	Open in IMG/M
3300031944\|Ga0310884_10322089	Not Available	868	Open in IMG/M
3300032003\|Ga0310897_10003823	All Organisms → cellular organisms → Bacteria → Proteobacteria	4058	Open in IMG/M
3300032122\|Ga0310895_10393080	Not Available	677	Open in IMG/M
3300032174\|Ga0307470_11531453	Not Available	555	Open in IMG/M
3300032205\|Ga0307472_100087704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2094	Open in IMG/M
3300032211\|Ga0310896_10153810	Not Available	1093	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	58.65%
Environmental	Environmental	41.35%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	58.65%
Terrestrial	Environmental → Terrestrial	41.35%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	41.35%
Rhizosphere	Host-Associated → Plants → Rhizosphere	34.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	22.12%
Roots	Host-Associated → Plants → Roots	1.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	25.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	18.27%
Soil	Host-Associated → Plants → Rhizosphere → Soil	18.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.35%
Loam	Environmental → Terrestrial → Soil → Loam	15.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.85%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.92%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	18.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	18.27%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.35%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	15.38%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.88%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.96%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	8.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.81%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.81%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	3.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.88%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.92%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005148	Soil and rhizosphere microbial communities from Laval, Canada - mgLMA	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012477	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.3.yng.040610	Host-Associated	Open in IMG/M
3300012512	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.old.270510	Host-Associated	Open in IMG/M
3300012513	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.old.250510	Host-Associated	Open in IMG/M
3300012514	Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.old.130510	Environmental	Open in IMG/M
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated	Open in IMG/M
3300012517	Unplanted soil (control) microbial communities from North Carolina - M.Soil.6.yng.070610	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027288	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066819_10031231	3300005148	Soil	MGNYQSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLISAALFAKEFSAETKWLGTAPER
Ga0066814_100462192	3300005162	Soil	MSRYRSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLISAALFAKEFSAETKWLGTAPER*
Ga0066869_100856322	3300005165	Soil	RAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLISAALFAKEFSAETKWLGTAPER*
Ga0070683_1001895293	3300005329	Corn Rhizosphere	MSRYRSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTATER*
Ga0070670_1009475263	3300005331	Switchgrass Rhizosphere	SRAGLKANEGKLPHHVDMMVPKGGFGARLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTATER*
Ga0070670_1019111931	3300005331	Switchgrass Rhizosphere	MSRYRSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTAPER*
Ga0068869_1008324812	3300005334	Miscanthus Rhizosphere	MSRYQSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTAPER*
Ga0068868_1005071241	3300005338	Miscanthus Rhizosphere	HHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAREFSAETKWLGTAPER*
Ga0070660_1019444591	3300005339	Corn Rhizosphere	AGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTAPER*
Ga0070689_1002931093	3300005340	Switchgrass Rhizosphere	GLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSLRESGHKIIRWCFADLISAALFAKEFSAETKWLGTAPER*
Ga0070661_1008787552	3300005344	Corn Rhizosphere	SMSRYRSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTAPER*
Ga0070668_1006109012	3300005347	Switchgrass Rhizosphere	MSRYQNRAGLKANEGKRLHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAREFSAETKWPGTAPER*
Ga0070669_1015014781	3300005353	Switchgrass Rhizosphere	MNRYQSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTAPER*
Ga0070675_1009926431	3300005354	Miscanthus Rhizosphere	MSRYRSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTA
Ga0070688_1017491721	3300005365	Switchgrass Rhizosphere	MNRYQSRAGLKANEGKLPHHVDMMVPKGGFGARLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAREFSAETKWLGTAPER*
Ga0070659_1001295711	3300005366	Corn Rhizosphere	MSRYQNRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTAPER*
Ga0070714_1002150384	3300005435	Agricultural Soil	MSRYRSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLISAALFAKEFSAETKWLGTAPES*
Ga0070711_1011587752	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MGRYQNRTGLKANEGKRPHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAREFSAETKWLGTAPER*
Ga0070700_1012552261	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	PHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAREFSAETKWLGTAPER*
Ga0070662_1011415292	3300005457	Corn Rhizosphere	MSRYQSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTATER*
Ga0070684_1002636412	3300005535	Corn Rhizosphere	MNRYQSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTATER*
Ga0070665_1020138342	3300005548	Switchgrass Rhizosphere	MSRYQNRAGLKANEGKRLHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAREFSAETKWLGTAPER*
Ga0070664_1000628688	3300005564	Corn Rhizosphere	MGRYQNRTGLKANEGKRPHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTATER*
Ga0068866_102237723	3300005718	Miscanthus Rhizosphere	MSRYRSRAGLKANEGKLPHHVDMIVPKGGFGVRLNEMHNWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTAPER*
Ga0068863_1016744641	3300005841	Switchgrass Rhizosphere	MGRYQNRTGLKANEGKRPHHVDMMVPKGGFGVRLNEMHDWHDWHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAREFSAETKWPGTAPER*
Ga0070717_100136674	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSRYQSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLISAALFAKEFSAETKWLGTAPER*
Ga0070716_10000031428	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	AGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLISAALFAKEFSAETKWLGTAPER*
Ga0075425_1000383116	3300006854	Populus Rhizosphere	MSRYQNRAGLKANEGKRPHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAREFSAETKWPGTAPER*
Ga0075436_1002519052	3300006914	Populus Rhizosphere	MSRYQNRTGLKANEGKRPHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAREFSAETKWPGTAPER*
Ga0074063_120260224	3300006953	Soil	RYRSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLISAALFAKEFSAETKWLGTAPER*
Ga0079219_109176012	3300006954	Agricultural Soil	MSRYQNRAGLKANEGKRPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTATER*
Ga0111539_101938693	3300009094	Populus Rhizosphere	MSRYQNRTGLKADEGKRPHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAREFSAETKWPGTAPER*
Ga0105245_117820411	3300009098	Miscanthus Rhizosphere	EGKRLHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAREFSAETKWLGTAPER*
Ga0075423_109402022	3300009162	Populus Rhizosphere	MSRYQNRTGLKADEGKRPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETRWLGTATER*
Ga0105238_116531451	3300009551	Corn Rhizosphere	MSRYQSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLISAALFAKEFSAETKWLGTAPE
Ga0134125_116160351	3300010371	Terrestrial Soil	MSRYQNRTGLKANEGKRPHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWWFADLVSAALFAREFSAETKWLGTATER*
Ga0105239_106264771	3300010375	Corn Rhizosphere	MSRYRSRAGLKANEGKRLHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWPGTAPER*
Ga0134126_107586282	3300010396	Terrestrial Soil	MSRYRSRAGLKANEGKRLHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTATER*
Ga0134122_115989942	3300010400	Terrestrial Soil	MSRYQSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAREFSAETKWLGTAPER*
Ga0134121_102402971	3300010401	Terrestrial Soil	MGNYQSRAGLKANEGKLPHHVDMIVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTAPER*
Ga0134123_104629942	3300010403	Terrestrial Soil	MGRYQNRTGLKANEGKRPHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWWFADLVSAALFAREFSAETKWPGTAPER*
Ga0105246_124430202	3300011119	Miscanthus Rhizosphere	RYQSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTAPER*
Ga0157336_10217951	3300012477	Arabidopsis Rhizosphere	MSRYQNRTGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTAPER*
Ga0157327_10461341	3300012512	Arabidopsis Rhizosphere	MSRYQNRTGLKADEGKRPHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAREFSAETKWLGTATER*
Ga0157326_10901911	3300012513	Arabidopsis Rhizosphere	MSRYRSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAREFRAETKWPGTAPER*
Ga0157330_10783992	3300012514	Soil	RFGSKADKGRASPKENEAKFPHHIDMMVPESGFGSRLNAMHDWFDARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTATER*
Ga0157338_10911831	3300012515	Arabidopsis Rhizosphere	RYQSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTATER*
Ga0157354_10300101	3300012517	Unplanted Soil	MSRYQNRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTATER*
Ga0164298_106554132	3300012955	Soil	MSRYRSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAREFSAETKWPGTAPER*
Ga0164302_101274382	3300012961	Soil	MSRYQNRAGLKANEGKRPHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKILRWCFADLASAALFAREFSAETKWPGTAPER*
Ga0164309_100425185	3300012984	Soil	MSRYRSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGQSRRESGHKIIRWCFADLISAALFAKEFSAETKWLGTAPER*
Ga0164304_104063551	3300012986	Soil	MSSYRSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLISAALFAKEFSAETKWLGTAPER*
Ga0157369_116065751	3300013105	Corn Rhizosphere	RAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTAPER*
Ga0157374_109442941	3300013296	Miscanthus Rhizosphere	MSRYQNRTGLKANEGKRPHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAREFSAETKWLGTAPER*
Ga0157378_100951103	3300013297	Miscanthus Rhizosphere	MSRYQNRAGLKANEGKRLHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLASAALFAREFSAETKWPGTAPER*
Ga0163162_108926253	3300013306	Switchgrass Rhizosphere	KLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTAPER*
Ga0157375_114912121	3300013308	Miscanthus Rhizosphere	GKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTAPER*
Ga0163163_104614722	3300014325	Switchgrass Rhizosphere	MSRYQNRAGLKANEGKCLHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAREFSAETKWLGTAPER*
Ga0163163_113817712	3300014325	Switchgrass Rhizosphere	LPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLISAALFAKEFSAETKWLGTAPER*
Ga0157377_109180951	3300014745	Miscanthus Rhizosphere	MSRYQSRAGLKANEGKLPHHVDMMVPKGGFGARLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAREFSAETKWLGTAPER*
Ga0157379_105394441	3300014968	Switchgrass Rhizosphere	MGRYQNRTGLKANEGKRPHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAREFSAETKWPGTAPER*
Ga0132256_1002570792	3300015372	Arabidopsis Rhizosphere	MSRYRNRAGLKANEGKLPHHVDMMVPKGGFGARLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTATER*
Ga0132255_1003001594	3300015374	Arabidopsis Rhizosphere	MNRYQSRAGLKANEGKLPHHVDMMVPKGGFGARLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTATER*
Ga0132255_1015439101	3300015374	Arabidopsis Rhizosphere	MSRYQNRAGLKANEGKRPHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLASAALFAREFSAETKWPGTAPER*
Ga0132255_1049908862	3300015374	Arabidopsis Rhizosphere	MSRYQNRTGLKANEGKRPHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAREFSAETKW
Ga0132255_1054259461	3300015374	Arabidopsis Rhizosphere	MSRYRSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGMAPER*
Ga0163161_107370911	3300017792	Switchgrass Rhizosphere	MNRCQSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLISAALFAKEFSAETKWLGTAPER
Ga0207697_104443781	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MSRYRSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTATER
Ga0207642_101705943	3300025899	Miscanthus Rhizosphere	MGNYQSRAGLKANEGKLPHHVDMIVPKGGFGVRLNEMHNWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTAPER
Ga0207710_104036992	3300025900	Switchgrass Rhizosphere	NEGKLPHHVDMMVPKGGFGARLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAREFSAETKWLGTAPER
Ga0207688_100685602	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MSRYRSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTATER
Ga0207680_100101468	3300025903	Switchgrass Rhizosphere	MSRYQSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLISAALFAKEFSAETKWLGTAPER
Ga0207685_100077538	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MSRYRSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFA
Ga0207654_101200871	3300025911	Corn Rhizosphere	MSRYQSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTAPER
Ga0207663_108145572	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MSRYQNRAGLKANEGKRPHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAREFSAETKWLGTAPER
Ga0207663_117093892	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	AGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTAPER
Ga0207662_111051951	3300025918	Switchgrass Rhizosphere	MNRYQSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTAPER
Ga0207657_107901741	3300025919	Corn Rhizosphere	MSRYQNRTGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTAPER
Ga0207649_106264401	3300025920	Corn Rhizosphere	KSMSRYRSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTAPER
Ga0207700_100087648	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	LPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLISAALFAKEFSAETKWLGTAPER
Ga0207700_100214499	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MSRYRSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTAPER
Ga0207706_104249852	3300025933	Corn Rhizosphere	MSRYQSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTATER
Ga0207670_111701712	3300025936	Switchgrass Rhizosphere	MGRYQNRTGLKANEGKRPHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAREFSAETKWLGTAPER
Ga0207669_109060181	3300025937	Miscanthus Rhizosphere	RYQSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTAPER
Ga0207679_102661132	3300025945	Corn Rhizosphere	MNRYQSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLISAALFAKEFSAETKWLGTAPER
Ga0207712_108001322	3300025961	Switchgrass Rhizosphere	MSRYQNRAGLKANEGKRLHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTAPER
Ga0207668_102443842	3300025972	Switchgrass Rhizosphere	MSRYQNRAGLKANEGKRLHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAREFSAETKWPGTAPER
Ga0207639_103976423	3300026041	Corn Rhizosphere	MSRYRSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAREFSAETKWPGTAPER
Ga0207702_100948042	3300026078	Corn Rhizosphere	MSRYQSRAGLKANEGKLPHHVDMMVPKGGFGARLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTAPER
Ga0207648_101004992	3300026089	Miscanthus Rhizosphere	MSRYRSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGMAPER
Ga0207676_120715721	3300026095	Switchgrass Rhizosphere	MSRYRSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLISAALFAKEFSAETKWLGTAPE
Ga0208525_10383812	3300027288	Soil	EGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLISAALFAKEFSAETKWLGTAPER
Ga0268265_109457033	3300028380	Switchgrass Rhizosphere	MNRYQSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTATER
Ga0268264_106474762	3300028381	Switchgrass Rhizosphere	MSRYQNRTGLKANEGKRPHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGTAPER
Ga0307498_100041343	3300031170	Soil	MSRYQNRAGLKANEGKRPHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAREFSAETKWPGTAPER
Ga0307468_1001207612	3300031740	Hardwood Forest Soil	MGNYQSRAGLKANEGKLPHHVDMIVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGMAPER
Ga0310907_101841921	3300031847	Soil	MSRYQNRAGLKANEGKRPHHVDMMVPKGGFGVRLNEMHDWHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFARE
Ga0310901_105899411	3300031940	Soil	MSRYQNRAGLKAIEGKRPHHVDMMVPKGGFGVRLNEMHDWHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAREFSAETKWPGTAPER
Ga0310884_103220891	3300031944	Soil	MSRYQNRAGLKANEGKRPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAREF
Ga0310897_100038235	3300032003	Soil	MSRYQNRAGLKANEGKRPHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLASAALFAREFSAETKWPGTAPER
Ga0310895_103930802	3300032122	Soil	MSRYQNRAGLKANEGKRPHHVDMMVPKGGFGVRLNEMHDWHDARSIEAVRGLSRRESGHKIIRWCFADLASAALFAR
Ga0307470_115314532	3300032174	Hardwood Forest Soil	MGNYQSRAGLKANEGKLPHHVDMIVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAREFSAETKWLGTAPER
Ga0307472_1000877043	3300032205	Hardwood Forest Soil	MGSYQSRAGLKANEGKLPHHVDMIVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAKEFSAETKWLGMAPER
Ga0310896_101538101	3300032211	Soil	MSRYQNRAGLKANEGKRPHHVDMMVPKGGFGVRLNEMHDWHDWHDARSIEAVRGLSRRESGHKIIRWCFADLVSAALFAREFSAETKWPGTAPER

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097956

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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