NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F097961

Metagenome / Metatranscriptome Family F097961

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F097961
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 111 residues
Representative Sequence MIRLRFFHPGRRVWRVSRRSDDALEERWVALRRVPPHWERIFSSTLDLIWLSNTPQPGHIQLNDERGFITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE
Number of Associated Samples 72
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 76.92 %
% of genes near scaffold ends (potentially truncated) 31.73 %
% of genes from short scaffolds (< 2000 bps) 62.50 %
Associated GOLD sequencing projects 67
AlphaFold2 3D model prediction Yes
3D model pTM-score0.74

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (92.308 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(23.077 % of family members)
Environment Ontology (ENVO) Unclassified
(36.538 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(51.923 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 22.30%    β-sheet: 30.94%    Coil/Unstructured: 46.76%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.74
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP familySCOP domainRepresentative PDBTM-score
d.129.3.0: automated matchesd2moua_2mou0.73614
d.104.1.4: PH0223-liked2ddza12ddz0.71463
d.129.3.0: automated matchesd6l1ma_6l1m0.71099
d.129.3.0: automated matchesd3uida13uid0.69661
d.129.3.2: STAR domaind2psoa12pso0.69236

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF10604Polyketide_cyc2 35.58
PF13649Methyltransf_25 12.50
PF00550PP-binding 7.69
PF12147Methyltransf_20 4.81
PF00441Acyl-CoA_dh_1 4.81
PF03364Polyketide_cyc 2.88
PF07993NAD_binding_4 2.88
PF08545ACP_syn_III 1.92
PF08241Methyltransf_11 1.92
PF04338DUF481 0.96
PF00578AhpC-TSA 0.96
PF02771Acyl-CoA_dh_N 0.96
PF04389Peptidase_M28 0.96
PF00589Phage_integrase 0.96
PF13517FG-GAP_3 0.96
PF01408GFO_IDH_MocA 0.96
PF16859TetR_C_11 0.96
PF07638Sigma70_ECF 0.96
PF05569Peptidase_M56 0.96
PF02770Acyl-CoA_dh_M 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG1960Acyl-CoA dehydrogenase related to the alkylation response protein AidBLipid transport and metabolism [I] 6.73
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 0.96
COG3137Putative salt-induced outer membrane protein YdiYCell wall/membrane/envelope biogenesis [M] 0.96

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms92.31 %
UnclassifiedrootN/A7.69 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001131|JGI12631J13338_1000488All Organisms → cellular organisms → Bacteria12172Open in IMG/M
3300002245|JGIcombinedJ26739_100415237All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1224Open in IMG/M
3300005450|Ga0066682_10094694All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1869Open in IMG/M
3300005591|Ga0070761_10000520All Organisms → cellular organisms → Bacteria24833Open in IMG/M
3300005591|Ga0070761_10065272All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2061Open in IMG/M
3300005602|Ga0070762_10016101All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3832Open in IMG/M
3300005602|Ga0070762_10072469All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1943Open in IMG/M
3300005602|Ga0070762_10833513All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia626Open in IMG/M
3300005610|Ga0070763_10443548All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium736Open in IMG/M
3300005921|Ga0070766_10062677All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2120Open in IMG/M
3300005921|Ga0070766_10208555All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1225Open in IMG/M
3300006028|Ga0070717_10025625All Organisms → cellular organisms → Bacteria4693Open in IMG/M
3300006059|Ga0075017_100007668All Organisms → cellular organisms → Bacteria6836Open in IMG/M
3300006059|Ga0075017_100098012All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2038Open in IMG/M
3300006059|Ga0075017_100450966Not Available971Open in IMG/M
3300006102|Ga0075015_100502995All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia698Open in IMG/M
3300006172|Ga0075018_10717083Not Available542Open in IMG/M
3300006176|Ga0070765_100172022All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1948Open in IMG/M
3300006176|Ga0070765_100200083All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1812Open in IMG/M
3300006176|Ga0070765_100446428All Organisms → cellular organisms → Bacteria1211Open in IMG/M
3300006354|Ga0075021_10140188All Organisms → cellular organisms → Bacteria1457Open in IMG/M
3300006354|Ga0075021_11053888Not Available531Open in IMG/M
3300006893|Ga0073928_10013007All Organisms → cellular organisms → Bacteria9414Open in IMG/M
3300006893|Ga0073928_10015562All Organisms → cellular organisms → Bacteria8279Open in IMG/M
3300006893|Ga0073928_10057854All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3445Open in IMG/M
3300009012|Ga0066710_100447428All Organisms → cellular organisms → Bacteria1936Open in IMG/M
3300009038|Ga0099829_10003759All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium8941Open in IMG/M
3300009038|Ga0099829_11634378All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium531Open in IMG/M
3300009645|Ga0116106_1140080All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium775Open in IMG/M
3300009665|Ga0116135_1056659All Organisms → cellular organisms → Bacteria → Acidobacteria1368Open in IMG/M
3300011269|Ga0137392_10531140All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium977Open in IMG/M
3300011270|Ga0137391_10060208All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3250Open in IMG/M
3300011271|Ga0137393_10863949All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia772Open in IMG/M
3300012189|Ga0137388_10006701All Organisms → cellular organisms → Bacteria7830Open in IMG/M
3300012205|Ga0137362_10001519All Organisms → cellular organisms → Bacteria14445Open in IMG/M
3300012205|Ga0137362_10838729All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia786Open in IMG/M
3300012350|Ga0137372_10602099All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium806Open in IMG/M
3300012363|Ga0137390_10023744All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium5740Open in IMG/M
3300012363|Ga0137390_10886166All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium847Open in IMG/M
3300012917|Ga0137395_10423459All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia955Open in IMG/M
3300012917|Ga0137395_10774408All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia695Open in IMG/M
3300014489|Ga0182018_10006487All Organisms → cellular organisms → Bacteria9124Open in IMG/M
3300014501|Ga0182024_10083321All Organisms → cellular organisms → Bacteria4752Open in IMG/M
3300017823|Ga0187818_10000155All Organisms → cellular organisms → Bacteria21282Open in IMG/M
3300017927|Ga0187824_10045757All Organisms → cellular organisms → Bacteria → Acidobacteria1344Open in IMG/M
3300017930|Ga0187825_10083790All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1095Open in IMG/M
3300017943|Ga0187819_10276878All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium978Open in IMG/M
3300017946|Ga0187879_10081986All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1863Open in IMG/M
3300017955|Ga0187817_10004014All Organisms → cellular organisms → Bacteria7895Open in IMG/M
3300018038|Ga0187855_10334921All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium884Open in IMG/M
3300018057|Ga0187858_10148548All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1563Open in IMG/M
3300020579|Ga0210407_10660711All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium812Open in IMG/M
3300020579|Ga0210407_11091631All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium605Open in IMG/M
3300020581|Ga0210399_10002808All Organisms → cellular organisms → Bacteria → Acidobacteria13572Open in IMG/M
3300020581|Ga0210399_10010153All Organisms → cellular organisms → Bacteria → Acidobacteria7364Open in IMG/M
3300020581|Ga0210399_10322682All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1289Open in IMG/M
3300020582|Ga0210395_10222816All Organisms → cellular organisms → Bacteria → Acidobacteria1416Open in IMG/M
3300020582|Ga0210395_11086007All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium591Open in IMG/M
3300020583|Ga0210401_10042315All Organisms → cellular organisms → Bacteria4312Open in IMG/M
3300020583|Ga0210401_10067817All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3361Open in IMG/M
3300021088|Ga0210404_10137348All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1270Open in IMG/M
3300021168|Ga0210406_10042550All Organisms → cellular organisms → Bacteria4020Open in IMG/M
3300021170|Ga0210400_10545698Not Available956Open in IMG/M
3300021178|Ga0210408_10969138All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium659Open in IMG/M
3300021181|Ga0210388_10034092All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium4194Open in IMG/M
3300021181|Ga0210388_10044099All Organisms → cellular organisms → Bacteria3704Open in IMG/M
3300021181|Ga0210388_11349720All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia600Open in IMG/M
3300021401|Ga0210393_10002674All Organisms → cellular organisms → Bacteria14510Open in IMG/M
3300021403|Ga0210397_10243856All Organisms → cellular organisms → Bacteria → Acidobacteria1301Open in IMG/M
3300021404|Ga0210389_10577194All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia884Open in IMG/M
3300021407|Ga0210383_10123054All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2193Open in IMG/M
3300021407|Ga0210383_10657071All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium902Open in IMG/M
3300021407|Ga0210383_11326490Not Available601Open in IMG/M
3300021420|Ga0210394_10021659All Organisms → cellular organisms → Bacteria5933Open in IMG/M
3300022557|Ga0212123_10013391All Organisms → cellular organisms → Bacteria10722Open in IMG/M
3300022557|Ga0212123_10057739All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3472Open in IMG/M
3300022557|Ga0212123_10596716All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium697Open in IMG/M
3300023259|Ga0224551_1013141All Organisms → cellular organisms → Bacteria → Acidobacteria1389Open in IMG/M
3300025320|Ga0209171_10418185All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium682Open in IMG/M
3300026514|Ga0257168_1057048All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium858Open in IMG/M
3300026551|Ga0209648_10016838All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium6377Open in IMG/M
3300026551|Ga0209648_10363353All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium985Open in IMG/M
3300027609|Ga0209221_1001322All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus → Terracidiphilus gabretensis6565Open in IMG/M
3300027674|Ga0209118_1042939All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1354Open in IMG/M
3300027853|Ga0209274_10000178All Organisms → cellular organisms → Bacteria52123Open in IMG/M
3300027853|Ga0209274_10134715All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1237Open in IMG/M
3300027884|Ga0209275_10079761All Organisms → cellular organisms → Bacteria → Acidobacteria1639Open in IMG/M
3300027889|Ga0209380_10138342All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1420Open in IMG/M
3300027889|Ga0209380_10162277All Organisms → cellular organisms → Bacteria → Acidobacteria1308Open in IMG/M
3300027895|Ga0209624_10206657All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1304Open in IMG/M
3300027911|Ga0209698_10038125All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium4325Open in IMG/M
3300027911|Ga0209698_10650292Not Available806Open in IMG/M
3300028906|Ga0308309_10067371All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2654Open in IMG/M
3300030760|Ga0265762_1000872All Organisms → cellular organisms → Bacteria5373Open in IMG/M
3300031057|Ga0170834_110390440Not Available504Open in IMG/M
3300031057|Ga0170834_112932078All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia956Open in IMG/M
(restricted) 3300031248|Ga0255312_1164815Not Available554Open in IMG/M
3300031708|Ga0310686_104525737All Organisms → cellular organisms → Bacteria8414Open in IMG/M
3300031715|Ga0307476_10655370All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium778Open in IMG/M
3300031754|Ga0307475_10648307All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium844Open in IMG/M
3300031962|Ga0307479_10753486All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium951Open in IMG/M
3300032180|Ga0307471_100285900All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1727Open in IMG/M
3300032180|Ga0307471_102053537All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium718Open in IMG/M
3300032895|Ga0335074_10654580All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1028Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil23.08%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil16.35%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil12.50%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds8.65%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring6.73%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment4.81%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.81%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil4.81%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland2.88%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.88%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland1.92%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.92%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.92%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.96%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.96%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa0.96%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.96%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.96%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil0.96%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.96%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001131Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300005450Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006102Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013EnvironmentalOpen in IMG/M
3300006172Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006354Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012EnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009645Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40EnvironmentalOpen in IMG/M
3300009665Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300014489Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300017823Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3EnvironmentalOpen in IMG/M
3300017927Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4EnvironmentalOpen in IMG/M
3300017930Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017946Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300018038Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10EnvironmentalOpen in IMG/M
3300018057Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300023259Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 20-24EnvironmentalOpen in IMG/M
3300025320Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026514Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-BEnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300027609Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027674Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027853Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300030760Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031248 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032895Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI12631J13338_1000488163300001131Forest SoilMIRLRFFHPGRRVWRVSRRSDDALQERWVAFRRVPPHWEKLFSSTLDLIWLSHTPQPGHIQLNDERGFITWHEGRWVTRITIRLQGFSAAKQSLVAATLLKAARFHLLEEE*
JGIcombinedJ26739_10041523713300002245Forest SoilHGSTLGLSQAHDICGSARDSGFSQGHKMIRLRFFHPGRRVWRVSRRSDDALEERWVALRRVPPHWERIFSSTLDLIWLSNTPQPGHIQLNDERGFITWHERRWMTGITIRLQGFSVAKQSLVATTLLKAARFHLLEEE*
Ga0066682_1009469423300005450SoilMIRLRFFHPGRRVWRVSRRSDGTLEERWVAFRRVPPHWERIFSSTLDLIWLSNTPQPGHIQLNDERGFITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE*
Ga0070761_10000520173300005591SoilMIRLRFLHPGRHVWRVWRRLDDALEESWVSFRRVPPNWEKIFASTLDLIWLPNTPQPGDIHLSDAHGFITWHENRWVTRITIRLQGFSAAKQSLIAATLLKAARFHLLEEE*
Ga0070761_1006527233300005591SoilMIRLRFFHPGRRVWRVSRRSDDALEERWVAFRRVPPHWEKIFSSSLDLIWLSHTPQPGHIQLNDERGFITWHEGRWVTRITIRLQGFSAAKQSLVAATLLKAARFHLLEEE*
Ga0070762_1001610133300005602SoilMIRLRFFHPGRRVWRVSRRSDDALEERWVALRRVPPHWERIFSSTLDLIWLSNTPQPGHIQLNDERGFITWHERRWMTGITIRLQGFSVAKQSLVATTLLKAARFHLLEEE*
Ga0070762_1007246943300005602SoilSARDSGFSQGHEMIRLRFFHPGRRVWRVSRRSDDALEESWVAFRRVPPHWEKIFSSTLDLIWLSHTPQPGHIQLNDERGFITWHECRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE*
Ga0070762_1083351323300005602SoilMIRLRFFHPGRRVWRVSRRSDGALEERWVAFRRVPPHWERIFSSTLDLIWLSNTPQPGHIQLNDERGFITWHERRWITRIAIQLQGFSAAKQSLVATTLLKAARFHLLEE
Ga0070763_1044354813300005610SoilMIRLRFFHPGRRVWRVSRRSDDALEESWVAFRRVPPHWEKIFSSTLDLIWLSHTPQPGHIQLNDERGFITWHERRWMTGITIRLQGFSVAKQSLVATTLLKAARFHLLEEE*
Ga0070766_1006267743300005921SoilMIRLRFLHPGRHVWRVWRRLDDAVEERWVSFRRVPPHWEKIFSSTLDLIWLPHTPQPGSIQLSDERGFITWHESRWVTRITIHLQGFSAAKQFLVATTLLKAARFHLLEEE*
Ga0070766_1020855513300005921SoilARDSGFSQGHEMIRLRFFHPGRRVWRVSRRSDDALEERWVAFRRIPPHWGRIFSSTLDLIWLSNTPQPGYIQLNDERGFITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE*
Ga0070717_1002562563300006028Corn, Switchgrass And Miscanthus RhizosphereMIRLRFFHPGRRVWRVSRRSDGALEERWVAFRRVPPHWERIFSSTLDLIWLSNTPQPGHIQLNDERGFITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLL*
Ga0075017_10000766853300006059WatershedsMIRLRFLHPGRRVWRVSRRSDDALEERWVAFRRVPTHWEKIFSSTLDLIWLSHTPQPGHIQLNDERGFITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE*
Ga0075017_10009801233300006059WatershedsMIRLRLFHPGRHVWRVSRQSDDALVEKWVALRHVPPQWEKIFSSTLDLIWLSHTVHPGRIQLNDQRGFITWLELRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLED*
Ga0075017_10045096623300006059WatershedsMIRLRIFHPGRHVWRLWSKRSGNTLEEIWISPRRIPPDWEKILASALDLIWLENTRRPGHIELNGQRGFIQWHEGQRTTRIRLRLENFSAKKQSLIAAALLKAARFHLLEEG*
Ga0075015_10050299513300006102WatershedsVIRLRFLHPGRHVWRVWRQRDDALEERWVSFRRVLPNWEKIFSSTLDLIWLPNTPQPGRIQLSDERGFITWHEERWVTRITLRLEGFSAAKQSLVAATLLKAARFHLLEEE*
Ga0075018_1071708313300006172WatershedsARDSGFSQGHEMIRLRFLHPGRRVWRVSRRSDDALEERWVAFRRVPTHWEKIFSSTLDLIWLSHTPQPGHIQLNDERGFITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE*
Ga0070765_10017202213300006176SoilMIRLRFFHPGRRVWRVSRRSDDALEERWVAFRRIPPHWERIFSSTLDLIWLSNTPQPGYIQLNDERGFITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE*
Ga0070765_10020008333300006176SoilMIRLRFFHPGRRVWRVSRRSDDALEESWVAFRRVPPHWEKIFSSTLDLIWLSHTPQPGHIQLNDERGFITWHECRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE*
Ga0070765_10044642823300006176SoilMIRLRFFHPGRRVWRVSRRSDDALEERWVAFRRVPPHWERIFSSTLDLIWLSNTPRPGRIQLNDERGFITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE*
Ga0075021_1014018833300006354WatershedsGRHVWRVARRHDQALEERWISFRRVPPNWEKIFSSTLDLIWLSSTPQPGRIHLSDEHGLITWNESRWVTRITIRLQGFSAAKQSLVATTLLKAARFHVLEEE*
Ga0075021_1105388813300006354WatershedsMIRLRIFHPGRHVWRLWSKRSGNTLEEIWISPRRIPPDWEKILASALDLIWLENTRRPGHIELNGQRGFIQWHEGQRTTRIRLRLENFSAKKQSLIAAALLKAARFHLLE
Ga0073928_1001300733300006893Iron-Sulfur Acid SpringMIRLRFLHPGRHVWRVWRRLDDAVEERWVSFRRVPPHWEKIFSSTLDLIWLPNTPQPGSIQLSDERGFITWHESRWVTRITIHLQGFSAAKQSLVATTLLKAARFHLLEEE*
Ga0073928_1001556243300006893Iron-Sulfur Acid SpringMIRLRFLHPGRHVWRLWRRLDDGVEEKWVSVRRAPPHWEKIFSSTLDLIWLPNTRQPGSIQLSDERGFITWHESRWVTRITIRLQGFSARKQSLVATTLLKAARFHLLEEE*
Ga0073928_1005785413300006893Iron-Sulfur Acid SpringLRFFHPGRRVWRVSRRSDDALEERWVAIRRVPPHWERIFSSTLDLIWLSNTPRPGRIQLNDERGFITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE*
Ga0066710_10044742823300009012Grasslands SoilMIRLRFFHPGRRVWRVSRRSDGTLEERWVAFRRVPPHWERIFSSTLDLIWLSNTPQPGHIQLNDERGFITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE
Ga0099829_10003759103300009038Vadose Zone SoilMIRLRCLHPGRHVWRLRRRSGHAVEETWISLRRIPPDWQKIFSSTLDLIWLPNTPQPGYIQLNDQHGFITWYESGRMTRITVRLEGFSAAKQSLIATALLKAARFHLLEEE*
Ga0099829_1163437813300009038Vadose Zone SoilHVWRLWRRRDDALEETWIALRRVPPDWEKVFSSTLDLIWLPNKPQAGHIELSNQHGFITWHESRQVTRITFRLERFSAAKQSLIAAVLLKAARFHLLEEE*
Ga0116106_114008013300009645PeatlandTRGLYQARHICGSARDSGFSQGHEMIRLRFFHPGRRVWRVSRRSDDALEERWVAFRRVPPHWEKIFSSTLDLIWLSHTPQPGHIQLNDERGFIAWHERRWVTRITIRLRGFSAAKQSLVATTLLKAARFHLLEEE*
Ga0116135_105665923300009665PeatlandMIRLRFFHPGRRVWRVSRRSDDALQERWVAFRRVPPHWEKIFSSTLDLIWLSHRPQPGHIQLNDERGFITWHEGRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE*
Ga0137392_1053114033300011269Vadose Zone SoilICGSARDSGFSQGHEMIRLRFFHPGRRVWRVSRRSDGALEERWVAFRRVPPHWERIFSSTLDLIWLSNTPQPGHIQLNDERGFITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE*
Ga0137391_1006020813300011270Vadose Zone SoilGHEMIRLRFFHPGRYVWRVSRRRDDALEESWVSFRRVPPHWKNIFSSTLDLIWLSNTPQPGHIQLNDERGFITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE*
Ga0137393_1086394913300011271Vadose Zone SoilMIRLRFFHPGRRVWRVSRRSDGALEERWVAFRRVPPHWERIFSSTLDLIWLSNTPQPGHIQLNDERGFITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFRLLEEE
Ga0137388_1000670133300012189Vadose Zone SoilMIRLRCLHPGRHVWRLRRRSGHAVEETWISLRRIPPDWQKIFSSTLDLIWLPNTPQPGYIQLNDQRGFISWHESGRMTRITVRLEGFSAAKQSLIATALLKAARFHLLEEE*
Ga0137362_10001519123300012205Vadose Zone SoilMIRLRCLHPGRHVWRLWRRSGHAVEETWISLRRIPPDWQKIFSSTLDLIWLPNTPQPGYIQLNDQRGFISWHESGRMTRITVRLEGFSAAKQSLIATALLKAARFHLLEEE*
Ga0137362_1083872923300012205Vadose Zone SoilMIQLRFLHPGRHVWRLWRRRDRGVQETWIAFRRVPPNWERIFSSTLDLIWLPNKPQPGHVELSDQHGFMNWHESRWATKITLCLQGFSAAKQSLIAAALLKAARFHLLEEEE*
Ga0137372_1060209923300012350Vadose Zone SoilMIRLRFFHPGRRVWRVSRRSGGALEETWVAFRRVPPHWERIFSSTLDLIWLSNTPQPGHIQLNHERGLITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE*
Ga0137390_1002374463300012363Vadose Zone SoilMIRLRFFHPGRRVWRVSRRSDGALEERWVAFRRVPPHWERIFSSTLDLIWLSNTPQPGHIQLNDERGFITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFRLLEEE*
Ga0137390_1088616613300012363Vadose Zone SoilLSQSHEMIRLRFLHPGRHVWRIWRRLDDAVEERWISLRRVPPHWEKIFSSTLDLIWLPNTPQPGSIQLSDERGFITWHESRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE*
Ga0137395_1042345923300012917Vadose Zone SoilMIRLRFFHPGRRVWRVSRRSDGALEERWVAFRRGPPHWERIFSSTLDLIWLSNTPQPGHIQLNDERGFITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE*
Ga0137395_1077440813300012917Vadose Zone SoilMISLRFLHPGRHVWRVWRRRDDALEERWVSFRRVLPNWEKIFSSTLDLIWLPNTPQPGSIQLSDERGFITWHESRWVTRITIRLQGFSTAKQSLVATTLLNLKPA*
Ga0182018_10006487123300014489PalsaVSRRSDDALEETWVAFRRVPTHWEKIFSSTLDLIWLSHTPQPGHIQLNDERGFITWHERRWVTRITVRLQGFSAAKQSLVATTLLKAARFHLLEEE*
Ga0182024_1008332153300014501PermafrostMIRLRFFHPGRRVWRVSRRSDGALEERWVAFRRVPPHWERIFSSTLDLIWLSNTPQPGHIQLNDERGFITWYERPWITRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE*
Ga0187818_10000155153300017823Freshwater SedimentMIRLRFLHPGRHVWRVWRRRDDGLEETWVSFRRVAPRWEKIFSSTLDLIWLPNTPQPGHIQLSDEHGLITWHESRWATRIIIRLRGFPAAKQSLVVTTLLKAARFHLLEEE
Ga0187824_1004575723300017927Freshwater SedimentMIRLRIFHPGRHVWRLWSKRSGNTLEETWISLRSVPPDWEKILASALDLIWLENTRRPGQIELNGQRGFIQWHEGRRTTRIRLRLENLSAKKQCLVAAALLKAARFHLLEEG
Ga0187825_1008379023300017930Freshwater SedimentMIRLRIFHPGRHVWRLWSKRSGNTLEETWISLRSVPPDWEKILASALDLIWLENTRRPGQIELNGQRGFIRWHEGRRTTRIRLRLENLSDKKQSLVAAALLKAARFHLLEEG
Ga0187819_1027687813300017943Freshwater SedimentKTRRICQARDICGPARDSGLSQGHEMIRLRFLHPGRHVWRVWRRRDDGLEETWISFRRVPPSWEKIFSSTLDLIWLPNTPQPGHIQLSDEHGLITWHEGRWVTRIIIRLRGFSAAKQSLVVTTLLKAARFHLLEEE
Ga0187879_1008198633300017946PeatlandMIRLRFFHPGRRVWRVSRRSDDALEERWVAFRRVPPHWEKIFSSTLDLIWLSHTPQPGHIQLNDERGFIAWHERRWVTRITIRLRGFSAAKQSLVATTLLKAARFHLLEEE
Ga0187817_1000401433300017955Freshwater SedimentMIRLRFLHPGRHVWRVWRRRDDGLEETWVSFRRVAPRWEKIFSSTLDLIWLPNTPQPGRIQLSDEHGLITWHEGRWVTRIIIRLRGFSAAKQSLVVTTLLKAARFHLLEEE
Ga0187855_1033492123300018038PeatlandMIRLRFFHPGRRVWRVSRRSDDALEERWVAFRRVPTHWEKIFSSTLDLIWLSHTPQPGHIQLNDERGFIAWHERRWVTRITIRLRGFSAAKQSLVATTLLKAARFHLLEEE
Ga0187858_1014854813300018057PeatlandMIRLRFFHPGRRVWRVSRRSDDVLEERWVAFRRVPPHWEKIFSSTLDLIWLSHTPQPGHIQLNDERGFIAWHERRWVTRITIRLRGFSAAKQSLVATTLLKAARFHLLEEE
Ga0210407_1066071123300020579SoilMIRLRFFHPGRRVWRVSRRSDDALEERWVAFRRIPPHWERIFSSTLDLIWLSNTPQPGYIQLNDERGFITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE
Ga0210407_1109163123300020579SoilGHAGFPQGHEMIRLRFLHPGRHVWRVWSRRDDALEERWVSFRRVLPNWEEIFTSTLDLIWLPNTPQPGCIQLSDERGFITWREERWVTRIALRLEGFSAAKQSLVAATLLKAARFHLLEE
Ga0210399_1000280823300020581SoilMIRLRFLHPGRHVWRVWRRRGHALEERWVSFRGVPPHWEKIFGSTLDLIWLSNTPKPGRIQLNDERGFISWHESRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE
Ga0210399_1001015323300020581SoilMIRLRFFHPGRRVWRVSRRGDDALEERWVAFRRVPPHWERIFSSTLDLIWLSNTPQPGYIQLNDERGFITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE
Ga0210399_1032268233300020581SoilVWRRLDDVVEERWVSFRRVPPHWEKIFSSTLDLIWLPNTPQPGSIQLSDERGFITWHESRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEA
Ga0210395_1022281613300020582SoilMIRLRFFHPGRRVWRVSSRRDEALEERWIALRRVPPHWEKIFSSTLDLIWLSHTLQPGHIQLNDERGFITWHERRWVTRITIRLRGFSAAKQSLVATTLLKAARFHLLEEE
Ga0210395_1108600723300020582SoilMIRLRFLHPGRHVWRVWRRRGHALEERWVSFRGVPPHWEKIFGSTLDLIWLSNTPKPGRIQLNDERGFISWHESRWVTRITIRLQGFSAAKQS
Ga0210401_1004231563300020583SoilMIRLRFFHPGRHVWRMSTRCDDGLEERWVAFRRVPPHWEKIFCSTLDLIWLSHTPQPGHIQLNDERGFITWHERRWVTRITIRLRGFSAAKQSLVATTLLKAARFHLLEEE
Ga0210401_1006781723300020583SoilMIRLRFFHPGRRVWRVSRRSDGALEERWVAFRRVPPHWERIFSSTLDLIWLSNTPQPGHIQLNDERGFITWHERRWITRIAIQLQGFSAAKQSLVATTLLKAARFHLLEEE
Ga0210404_1013734823300021088SoilLRIFHPGRHVWRLGNRRSGNALEETWISIGRVPADWENILASALDLIWLQNTRQPGHIELNNQHGFIQWHESRRMTKIRVRLENFSPKKQSLIATALLKAARFHLLAEE
Ga0210406_1004255063300021168SoilMIRLRFLHPGRRVWRVSRRSDDALEERWVAIRRVPPHWERIFSSTLDLIWLSNTPQLGYIQLNDGRGCITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE
Ga0210400_1054569823300021170SoilMIRLRFLHPGRHVWRLWRQRGAAVEERWISLRRVPPNWERIFSSTLDLIWLPNTPQPGRIKLSDQRGFITWHESRLVTRITVRLAGFSAAKQSLVATTLLKAARFHLLEEE
Ga0210408_1096913823300021178SoilEMIRLRFLHPGRHVWRLWRQRGAAVEERWISLRRVPPNWERIFSSTLDLIWLPNTPQPGRIKLSDQRGFITWHESRLVTRITVRLAGFSAAKQSLVATTLLKAARFHLLEEE
Ga0210388_1003409233300021181SoilMIRLRFFHPGRRVWRVSRRSDDALEESWVAFRRVPPHWEKIFSSTLDLIWLSHTPQPGHIQLNDERGFITWHECRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE
Ga0210388_1004409963300021181SoilMIRLRFFHPGRRVWRVSRRSDDALEERWVALRRVPPHWERIFSSTLDLIWLSNTPQPGHIQLNDERGFITWHERRWMTGITIRLQGFSVAKQSLVATTLLKAARFHL
Ga0210388_1134972013300021181SoilMIRLRFFHPGRHVWRVSRWSEDALEERWVAIRRVPPHWERIFSSTLDLIWLSHTPQPGYIQLNDERGFITWHERRWVTRITIRLQGFSAAKQSLVAIT
Ga0210393_1000267473300021401SoilMIRLRFFHPGRRVWRVSRRSDDALEERWVALRRVPPHWERIFSSTLDLIWLSNTPQPGHIQLNDERGFITWHERRWMTGITIRLQGFSVAKQSLVATTLLKAARFHLLEEE
Ga0210397_1024385623300021403SoilMIRLRFFHPGRRVWRVSSRRDEALEERWIALRRVPPHWEKIFSSTLDLIWLSHTLQPGHIQLNDERGFITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE
Ga0210389_1057719423300021404SoilMIRLRFLHPGRRVWRVSRRSDDTLEERWVAFRRVPTHWEKIFSSTLDLIWLSHTPQPGHIQLNDERGFITWHERRWVTRITIRLQGFSTAKQSLVATTLLKAARFYLLEEE
Ga0210383_1012305423300021407SoilMIRLRFFHPGRRVWRVSRRSDDALEERWVAFRRVPPHWERIFSSTLDLIWLSNTPRPGRIQLNDERGFITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE
Ga0210383_1065707123300021407SoilMIRLRFLHPGRRVWRVSRRSDDALEERWVAFRRVPTHWEKIFSSTLDLIWLSHTPQPGHIQLNDERGFITWHERRWVTRITIRLQGFSTAKQSLVATTLLKAARFYLLEEE
Ga0210383_1132649013300021407SoilMIRLRFLHPGRHVWRVWRRRGHALEERWVSFRGVPPHWEKIFGSTLDLIWLSNTPKPGRIQLNDERGFISWHESRWVTRITIRLQGFSAAKQSLVATTLLKGARFHLLEEE
Ga0210394_1002165943300021420SoilMIRLRFLHPGRHVWRVWRRLDDVVEERWVSFRRVPPHWEKIFSSTLDLIWLPNTPQPGSIQLSDERGFITWHESRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEA
Ga0212123_10013391143300022557Iron-Sulfur Acid SpringMIRLRFLHPGRHVWRVWRRLDDAVEERWVSFRRVPPHWEKIFSSTLDLIWLPNTPQPGSIQLSDERGFITWHESRWVTRITIHLQGFSAAKQSLVATTLLKAARFHLLEEE
Ga0212123_1005773943300022557Iron-Sulfur Acid SpringMIRLRFLHPGRHVWRLWRRLDDGVEEKWVSVRRAPPHWEKIFSSTLDLIWLPNTRQPGSIQLSDERGFITWHESRWVTRITIRLQGFSARKQSLVATTLLKAARFHLLEEE
Ga0212123_1059671613300022557Iron-Sulfur Acid SpringFFHPGRRVWRVSRRSDDALEERWVAIRRVPPHWERIFSSTLDLIWLSNTPRPGRIQLNDERGFITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE
Ga0224551_101314123300023259SoilMIRLRFFHPGRRVWRVSRRSDDALEETWVAFRRVPTHWEKIFSSTLDLIWLSHTPQPGHIQLNDERGFITWHERRWVTRITVRLQGFSAAKQSLVATTLLKAARFHLLEEE
Ga0209171_1041818513300025320Iron-Sulfur Acid SpringRRVWRVSRRSDDALEERWVAIRRVPPHWERIFSSTLDLIWLSNTPRPGRIQLNDERGFITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE
Ga0257168_105704813300026514SoilARDVCGSARDSGFSQGHEMIRLRFLHPGRRVWRVSRRSDDALEERWVAFRRVPPHWERIFSSTLDLIWLSNTPQPGYIQLNDERGFITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE
Ga0209648_1001683893300026551Grasslands SoilMIRLRFLHPGRHVWRVWRRRDDALEERWVSFRRVLPNWEKIFSSTLDLIWLPNTPRPGRIQLSDERGFITWHEERWMTRITLRLAGFSAAKQSLVAATLLKAARFHLLEEE
Ga0209648_1036335323300026551Grasslands SoilMIRLRFFHPGRRVWRVSRRSDGALEERWVAFRRVPPHWERIFSSTLDLIWLSNTPQPGHIQLNDERGFITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE
Ga0209221_100132223300027609Forest SoilMIRLRFFHPGRRVWRVSRRSDDALQERWVAFRRVPPHWEKLFSSTLDLIWLSHTPQPGHIQLNDERGFITWHEGRWVTRITIRLQGFSAAKQSLVAATLLKAARFHLLEEE
Ga0209118_104293923300027674Forest SoilMIRLRFFHPGRRVWRVSRRSDDALEERWVAFRRVPPHWERIFSSTLDLIWLSNTPQPGYIQLNDERGFVTWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE
Ga0209274_10000178163300027853SoilMIRLRFLHPGRHVWRVWRRLDDALEESWVSFRRVPPNWEKIFASTLDLIWLPNTPQPGDIHLSDAHGFITWHENRWVTRITIRLQGFSAAKQSLIAATLLKAARFHLLEEE
Ga0209274_1013471523300027853SoilMIRLRFFHPGRRVWRVSRRSDDALEERWVAFRRVPPHWEKIFSSSLDLIWLSHTPQPGHIQLNDERGFITWHEGRWVTRITIRLQGFSAAKQSLVAATLLKAARFHLLEEE
Ga0209275_1007976123300027884SoilMIRLRFFHPGRRVWRVSRRSDDALEERWVALRRVPPHWERIFSSTLDLIWLSNTPQPGHIQLNDERGFITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE
Ga0209380_1013834233300027889SoilMIRLRFLHPGRHVWRVWRRLDDALEESWVSFRRVPPNWEKIFASTLDLIWLPNTPQPGDIHLSDAHGFITWHENRWVTRITIRLQGFSAAKQSLIAATLLKAARFHLL
Ga0209380_1016227723300027889SoilMIRLRFLHPGRHVWRVWRRLDDAVEERWVSFRRVPPHWEKIFSSTLDLIWLPHTPQPGSIQLSDERGFITWHESRWVTRITIHLQGFSAAKQFLVATTLLKAARFHLLEEE
Ga0209624_1020665723300027895Forest SoilMIRLRFFHPGRRVWRVSRRSGDALEEIWVAFRRVPPRWEKIFSSTLDLIWLSNTPQPGRIQLNDERGLITWHERGWVTSIKIRLQGFSAAKQSLVATTLLKAARFHLLEEE
Ga0209698_1003812573300027911WatershedsMIRLRIFHPGRHVWRLWSKRSGNTLEEIWISPRRIPPDWEKILASALDLIWLENTRRPGHIELNGQRGFIQWHEGQRTTRIRLRLENFSAKKQSLIAAALLKAARFHLLEEG
Ga0209698_1065029223300027911WatershedsVSRQSDDALVEKWVALRHVPPQWEKIFSSTLDLIWLSHTVHPGRIQLNDQRGFITWLELRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLED
Ga0308309_1006737133300028906SoilMIRLRFFHPGRRVWRVSRRSGDALEERWVAFRRVAPHWEKIFSSTLDLIWLSHTPQPGHIQLNDERGFITWHECRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE
Ga0265762_100087253300030760SoilMIRLRFFHPGRRVWRVSRRRDEALEESWVAFRRVPPHWEKIFSSTLDLIWLSHTPQPGHIQLNDERGFITWHECRWVTRITIRLQGFSAAKQSLVASTLLKAARFHLLEEE
Ga0170834_11039044013300031057Forest SoilMIRLRLLHPGRHVWRVWRRRDDALEERWVSVRRVLPNWEKIFTSTLDLIWLPNTPQPGCIKLSDERGFIKWHEERWVTRIALRLEGFSAAKHS
Ga0170834_11293207823300031057Forest SoilMIRLRFFHPGRRVWRVSRRSDDALEERWVALCRVPPHWEKIFSSTLDLIWLSHTVQPGHIQLNDEHGFITWNEHRWVTRITIRLQRFSAAKQSLVATTLLKAARFHLLEEE
(restricted) Ga0255312_116481523300031248Sandy SoilMIRLRFLHPGRHVWRLWRRRDRAVKETWIALRRVPPNWERIFSSTLDLIWLPNTPQPGHIQLSDQHGSITWHESRRVTKITIRLEGFSAAKQSLIAAALLKAARFHLLEEE
Ga0310686_104525737103300031708SoilMIRLRFFHPGRRVWRVSRRSDGALEERWVAFRRVPPHWERIFSSTLDLIWLSNTPQPGHIQLNDERGFITWYERPWITRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE
Ga0307476_1065537023300031715Hardwood Forest SoilQGHKMIRLRFFHPGRRVWRVSRRSDDALEERWVALRRVPPHWERIFSSTLDLIWLSNTPQPGHIQLNDERGFITWHERRWMTGITIRLQGFSVAKQSLVATTLLKAARFHLLEEE
Ga0307475_1064830723300031754Hardwood Forest SoilMIRLRLLHPGRHVWRVWRRRDDALEERWVSVRRVLPNWEKIFTSTLDLIWLPNAPQPGCIQLSDERGFITWREERWVTRIALRLEGFSAAKQSLVAATLLKAARFHLLEEE
Ga0307479_1075348613300031962Hardwood Forest SoilRRSDDALEESWVAFRRVPSRWEKIFSSTLDLIWLPHTVQPGRIQLNDERGFITWHERRWVTRITIRLQGFSAAKQSLVATTLLKAARFHLLEEE
Ga0307471_10028590023300032180Hardwood Forest SoilMIRLRFVHPGRHVWRVWRRRDDALEERWVSFRRVLPHWEKIFSSTLDLIWLPNTPQPGRIQLSDERGFITWHEERWVTRITLRLEGFSAAKQSLVAATLLKAARFHLLEEE
Ga0307471_10205353723300032180Hardwood Forest SoilAWHSGFPQGHEMIRLRLLHPGRHVWRVWRRRDDALEERWVSVRRVLPNWEKIFTSTLDLIWLPNTPQPGYIQLSDERGFITWHEERWVTRIALRLEGFSAAKQSLVAATLLKAARFHLLEEE
Ga0335074_1065458023300032895SoilMIRLRFFHPGRRVWRVSRRSDDALQEKWVAFRRVPPRWEEIFSSTLDLIWLSHTLQPGYIQMNDERGFITWRERRWVTRITIRLQGFSAAKQSLIAATLLKAARFHLLMEE

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.