Metagenome / Metatranscriptome Family F098009

Basic Information
Family ID	F098009
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	53 residues
Representative Sequence	ALNNNTAGVREREDASRTREAGHLDGIQGVVANTLKLPRGGTVGFIDW
Number of Associated Samples	90
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	14.29 %
% of genes near scaffold ends (potentially truncated)	2.88 %
% of genes from short scaffolds (< 2000 bps)	6.73 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.15

Most Common Taxonomy
Group	Unclassified (93.269 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (34.615 % of family members)
Environment Ontology (ENVO)	Unclassified (40.385 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.692 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF12681	Glyoxalase_2	4.81
PF00903	Glyoxalase	3.85
PF00892	EamA	2.88
PF07883	Cupin_2	2.88
PF13376	OmdA	1.92
PF01694	Rhomboid	1.92
PF13649	Methyltransf_25	1.92
PF01548	DEDD_Tnp_IS110	1.92
PF13495	Phage_int_SAM_4	0.96
PF01384	PHO4	0.96
PF13474	SnoaL_3	0.96
PF12680	SnoaL_2	0.96
PF01042	Ribonuc_L-PSP	0.96
PF11138	DUF2911	0.96
PF00557	Peptidase_M24	0.96
PF02371	Transposase_20	0.96
PF00589	Phage_integrase	0.96
PF00144	Beta-lactamase	0.96
PF02811	PHP	0.96
PF08002	DUF1697	0.96
PF02517	Rce1-like	0.96
PF06172	Cupin_5	0.96
PF10604	Polyketide_cyc2	0.96
PF13924	Lipocalin_5	0.96
PF12973	Cupin_7	0.96
PF16864	Dimerisation2	0.96
PF11954	DUF3471	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	2.88
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	1.92
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.96
COG0306	Phosphate/sulfate permease	Inorganic ion transport and metabolism [P]	0.96
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.96
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.96
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.96
COG3542	Predicted sugar epimerase, cupin superfamily	General function prediction only [R]	0.96
COG3797	Uncharacterized conserved protein, DUF1697 family	Function unknown [S]	0.96
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.96

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.27 %
All Organisms	root	All Organisms	6.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.27 %
cellular organisms	root	All Organisms → cellular organisms	6.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.27 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	6.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.27 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.27 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.27 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	1.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.27 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.92 %

Scaffold	Taxonomy	Length	IMG/M Link
3300004156\|Ga0062589_100220816	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1390	Open in IMG/M
3300005171\|Ga0066677_10836557	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	508	Open in IMG/M
3300006046\|Ga0066652_100203560	All Organisms → cellular organisms → Bacteria	1704	Open in IMG/M
3300006169\|Ga0082029_1135791	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300006796\|Ga0066665_10403758	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1127	Open in IMG/M
3300010326\|Ga0134065_10036459	All Organisms → cellular organisms → Bacteria	1465	Open in IMG/M
3300012204\|Ga0137374_10464514	All Organisms → cellular organisms → Bacteria	991	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.27%
Host-Associated	Host-Associated	6.73%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.38%
Plants	Host-Associated → Plants	6.73%
Aquatic	Environmental → Aquatic	2.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.38%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.88%
Sediment	Environmental → Aquatic → Sediment	1.92%
Freshwater	Environmental → Aquatic → Freshwater	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.96%
Loam	Environmental → Terrestrial → Soil → Loam	14.42%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.92%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.96%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	39.42%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.62%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.81%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	34.62%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.46%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.73%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.92%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
3300002128	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020008	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m2	Environmental	Open in IMG/M
3300020010	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1s2	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030855	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_17000520	2124908045	Soil	LNNITAGVREREDANRTREAGHLDEIQGVVANTLDLFRNGAVGFIDWLGGCGWLTD
JGI24036J26619_101243961	3300002128	Corn, Switchgrass And Miscanthus Rhizosphere	LNNNTAGVREREDASRTREAGHLDGIQGAVASTPKLPRGGPVGFIDWYIXEGIA
Ga0062593_1026100491	3300004114	Soil	LNNITAGVRERQHVNRTREAGHLDEIQGAVANTLKLHRWAVDFIDWLDA
Ga0062589_1002208162	3300004156	Soil	LNNITAGVREREGENRSREAGHMDKIQGIVANRLNLLGNGAAGFIDWLGLRK*
Ga0063356_1053696292	3300004463	Arabidopsis Thaliana Rhizosphere	LNNITAAVRECQDANRTRKAGRLDEIQGVVAIMLNHFANGVVGFIDWLDAALEHGGGG
Ga0066672_110123491	3300005167	Soil	KSNTAGVREREDANRTREGGHVGETQSVMASMAKSFRNGAAGFIDWLDGRRRSSPSRAH*
Ga0066677_103203861	3300005171	Soil	LNNFTAGVREREETNRTRVAGHLDEIQGAVANTLRLSREGAVGFIGWLGLSC*
Ga0066677_108365571	3300005171	Soil	LSNITTGVREREDANRTREAGHLDEIQGVVANTLDLFRNGAVGFIDWLGH
Ga0066683_107744363	3300005172	Soil	PNEKEKARQALNNFTAGVREREETNRTRVAGHLDEIQGAVANTLRLSREGAVGFIGG*
Ga0066673_103656321	3300005175	Soil	RDQPRLALNNTTAGMRERGGANRTREAGHLDEIQGVVANTLDLFRNGAVGFIVWLGWVI*
Ga0066673_105236271	3300005175	Soil	ERDKPRLALKSNTAGVREREDANRTREAGHLDEIEGAVANTLRFSRQGVVGFIDWLERS*
Ga0066690_101845604	3300005177	Soil	NITAGVREREDANRTREAEHLDEIQGVVANTLDLFRNGAVGFIDWLDRSRLDH*
Ga0066690_107033012	3300005177	Soil	MAALNNITAGVRERADANRTREAGHLDEIQGVVASSLKLYRQGAVGFIDWLDPLWP*
Ga0066688_106015582	3300005178	Soil	LNNNTAGVREREDASRTREAGHLDGIQGAVASTPKLPRAGTVGFIG*
Ga0066684_101765241	3300005179	Soil	VREREEASRTREAGHVDGIQGAVASTPKLPRAGTVGFIDW*
Ga0066685_101001631	3300005180	Soil	NEKEMPRLALKSNTAGVREREDANRTREAGHLDEIEGAVANTLRFSRQGVVGFIDWLERS
Ga0066678_101367311	3300005181	Soil	LNNITAEVREREDANRTREAGHLDEIQGVVANTLKLYRNGAVGFIDWLGLGVTT*
Ga0066678_110546161	3300005181	Soil	RERDKPRLALKSNTAGVRERESANRTREAGHRDEIERVVANTLKLSRNGAVGFIVWLDAL
Ga0066671_100088827	3300005184	Soil	LNNNTAGVREREEASRTREAGHVDGIQGAVASTPKLPRAGTVGFIDW*
Ga0066676_100957614	3300005186	Soil	KPRLALNNITAGVREREDANRTREAGHLDEIQSAVANTLNLFRGGAVGFIDWLGSQSL*
Ga0066676_101165243	3300005186	Soil	LNNITAGVRERQDTNRTREAGQLDEIQRAVANTLRLSREGAVGFIDWLHVIQNGLKELKV
Ga0066676_111827172	3300005186	Soil	DRDKPRQSLNNNTAGVREREHANRTREAGNRDEVEGVMANTLKVHRNGAVGFIDWLDVFVRFTWRK*
Ga0066675_114187622	3300005187	Soil	LNNITAGVCEREDANRTRVAGHLDEIQGAVANILKLYRNGAIGFIDWLDVWPCFKVSAIALR*
Ga0068869_1008576563	3300005334	Miscanthus Rhizosphere	LNNITAGVREREGENRRREAGHMDKIQGIVANRLNLLGNRAAAFIDWLGLPK*
Ga0070669_1000918592	3300005353	Switchgrass Rhizosphere	LNNNTAGVREREDASRTREAGHLDGIQGAVASTPKLPRGGPLGFIDW*
Ga0070709_101952064	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LNNNTAGVREREDASRSREAGHLDGIQGAVASTPKLPRGGPVGFIDW
Ga0070713_1005959633	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VREREDASRTREAGHVDEIQGVVANTPKLPRGGTVGFIDW*
Ga0070710_102553013	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LNNNTAGVREREDASRTREAGHLDGIQGAVASTPKLPRGGPVGFID*
Ga0066681_105283451	3300005451	Soil	LNNITAGVCERQDANRTREAGHLDEIQGVVANTLKLFPDGAVGFIDWLH
Ga0068867_1009385472	3300005459	Miscanthus Rhizosphere	GVREREDASRTREAGHLDEIQGVVANTPKLPRGGTVGFIDW*
Ga0070697_1004905222	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	LNNNTAGVREREDASRTREAGHLDGIQGAVANTPKLPRGGTVGFIDW*
Ga0070697_1007902391	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	RLALNNITAGVREREDANRTREAGHLDEIQGVLAITLNSYRNGAVG*
Ga0070672_1012230322	3300005543	Miscanthus Rhizosphere	LNNNTAGVREREDASRTREAGHLDGIQGAVASTPKLPRGGP
Ga0070665_1017238691	3300005548	Switchgrass Rhizosphere	EDASRTREAGHLDGIQGAVASTPKLPRGGPLGFIDW*
Ga0070704_1009954402	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VLNNNTAGVREREETNRTRVAGHLDEIQGVVASRLKGSRNGDVGFIDWLDSLSELRNTR*
Ga0066692_106666843	3300005555	Soil	RLALNNNTAGVREREDASRTREAGHLDGIQGAVASTPKLPRAGTVGFIG*
Ga0066707_105304251	3300005556	Soil	LNNITAGVRERGDANRTREAGHLDEIQGVVAKTLWLFRNGAVGFTDWLDLMRGSAILVAHS*
Ga0066700_104511181	3300005559	Soil	LNNITAGVREREDANRTREVGHLDEIQGVVASSLNLFRNGAVGFIDWLGVAVLTKER*
Ga0066703_100850041	3300005568	Soil	GVREREDASRTREAGHVDGIQGAVASTPKLPRAGTVGFIDW*
Ga0066705_100782731	3300005569	Soil	LKDITAGVREREDANRTREAGHLDEIQVDGNHAEVISQGAVGFIVWLDLFVNYLE
Ga0066708_102288513	3300005576	Soil	LNNVTAGVREREEANRTREAGHLDEIQGVVANTLKLHRNGAVGFIDWLGLMDVLIWVNKA
Ga0066691_103247571	3300005586	Soil	LNNNTAGVREREDASRTREAGHLDGIQGAVASTPKLPRAGTVGFIDW*
Ga0066654_104609902	3300005587	Soil	TAVEVHQRERDKPRLVLNNNTAGVREREDASRTREAGHLDRIQGAVASTPKLPRAGTVGFIDW*
Ga0066706_105258303	3300005598	Soil	LNNNTAGVREREEANRTRVAGHLDEIQGVVANSLNLQRNAAVGFIVWLGPRAADRH*
Ga0066706_107054251	3300005598	Soil	LSNITAGVREREDANRTREAGHLDEIQGVVANTLAVIRSGAVGFIDWLGVSVIRS*
Ga0066706_113718012	3300005598	Soil	RDKPRLALKSNTAGVREREDANRTREAGHRDEVEGVVANTLRFSRKGAVGLIGWLDG*
Ga0066706_113810082	3300005598	Soil	RDKPRLALKSNTAGVREREDANRTREAGHRDEVEGVVANTLNLFRNRAVGFIV*
Ga0068866_105653952	3300005718	Miscanthus Rhizosphere	MAGMREREDASRTGEAGAPDEIQGAVANTPKLPFAGTVGFIDW*
Ga0066652_1002035603	3300006046	Soil	LNNNTAGVREREDASRTREAGHLDGIQGVVANTLNLLCNGAVGFIDESYGSGAGK*
Ga0066652_1010820883	3300006046	Soil	LNNITAGVRERGDANRTREAGHLDEIQGVVANTLKLFRNGAVGFIDWLGLTL*
Ga0066652_1014632831	3300006046	Soil	RDKPRQSLNNNTAGVREREDANRTREAGNRDEVEGVVANLVKLLLNGPVGFIDWVDA*
Ga0082029_11357911	3300006169	Termite Nest	LNNNTAGVCEREDANRTRVAGHLDEIQGVVANTLTLQRHGAVGFSWIAWLVWDAFFIGV
Ga0070712_1002140682	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LNNNTAGVREREDASRTREAGRLDGIQGAVANTPKLPRGGTVGFIDR*
Ga0070765_1010537361	3300006176	Soil	PRLALKSNTAGVRELEEANRTREAGSVDEIQGVVASKLNSPWLGAGGFIAG*
Ga0066665_104037582	3300006796	Soil	LNNITAGVCEREEANRTRVAGHLDEIQGAVANTLNLFRHGAVGFIGG*
Ga0066659_115049702	3300006797	Soil	LNNNAAGVRECEETNRTRVAEHLDEIQGVVASALNLFLNGAVGFIDWLGWVI*
Ga0066710_1003088231	3300009012	Grasslands Soil	KPRLALNNNTAGVRERESVNRTRVVGHRDEVEGVVANTLRSPRNGAVGFIDWLDRSSIQLLCA
Ga0066710_1030467581	3300009012	Grasslands Soil	LNNITAGVRERGDANRTREAGHLDEIQGVVAKTLWLFRNGAVGFTDWLDLMRGSAILVAH
Ga0134109_104271231	3300010320	Grasslands Soil	LNNITAGVREREDANRTREAGHLDEIQGAMASTLKLFPNGAVGFIDWLGSVLSIGFDDLC
Ga0134065_100364593	3300010326	Grasslands Soil	TAGVREREEANRTREAGHLDEIQGVVANKLDLFRNGAVGFIDWLDAFIRHSSIE*
Ga0126379_114330601	3300010366	Tropical Forest Soil	RERDKPRLSLKSNTAGVRERENANRTREVGNRDEVEGVVANTLSFFRNGAVGFIASA*
Ga0134125_130140032	3300010371	Terrestrial Soil	LNNNTAGVREREDASRTREAGHLDEIPVVAANRPKLARGGAGGFIGRALCAKALREVA
Ga0134128_101723235	3300010373	Terrestrial Soil	ERDKPRPAVSNNTAGMRERKDASRTREAGPLDEIQGAVANTPKLPRGGTVGFIDR*
Ga0126381_1034996581	3300010376	Tropical Forest Soil	KPRLALDNNTAGVRERQEANRTREAGHVDEIQGVVANRLELFSHGPLASSLG*
Ga0134121_100986273	3300010401	Terrestrial Soil	MRERKDASRTREAGPLDEIQGAVANTPKLPLAGTVGFIDW*
Ga0137383_103704052	3300012199	Vadose Zone Soil	TAGVRERQNANRTREAGHLDEIQGAVANTLNLFRNGVVGFIGWLGG*
Ga0137365_101625012	3300012201	Vadose Zone Soil	RLALNNNTAGVREGEDANRTREVGHLDEIQGVIATTLTLFRNGAVG*
Ga0137363_116553601	3300012202	Vadose Zone Soil	LNNFTAGVREREDANRTREAGHLDEIQGAVANTLNLFCNGAVGFIDWLDGRVH
Ga0137374_104645142	3300012204	Vadose Zone Soil	VLNNNTAGVREREEANRTREAGHLDEIQGVVANAVKLHRNGAVGFIDWLDPFIRHSSIE*
Ga0137371_111464161	3300012356	Vadose Zone Soil	LALNNITAGVREREDANRTREAGHLDEIQGAVANTLNLYRNGAVGFTVWLGWVI*
Ga0137360_105731001	3300012361	Vadose Zone Soil	KPRLALDNITAGVREREDANRTREAGHLDEIQGVLANTLKLYRNGAVGFIDWLDVWAW*
Ga0137373_107032451	3300012532	Vadose Zone Soil	RETDKPRQSLKNNTAGVREREDENRTREAGNRDEVEGVVANTLKLYRNGAVGFIVWLGL*
Ga0157306_101514422	3300012912	Soil	GVREREGENRSREAGHMDKIQGIVANRLNLLGNGAAGFIDWLGLRK*
Ga0137396_102888211	3300012918	Vadose Zone Soil	LNNITAGVREREDANRTREAVHLDGIQGVVANTLNSFRHRAVGFIDWLDGSAVNTPGI*
Ga0137413_100175441	3300012924	Vadose Zone Soil	NKPRLALNNITAGVREREDANRTRVAGHLDEIQGVVANTRNLYRNGAVAASIG*
Ga0137419_102221431	3300012925	Vadose Zone Soil	LALNNNTAGVREREDASRTREAGHLDEIQGAVANRPRLPRGGTVDFIDW*
Ga0137418_101388484	3300015241	Vadose Zone Soil	LINFTAGERERANRTRVAGHLDEIQGVVANMLNLFRNGAVGFIDWLDLIS*
Ga0137412_108542191	3300015242	Vadose Zone Soil	ERDKPRLALNNNTAGVREREDASRTREAGHLDEIQGAVANTPKLLRGGTVGFIDW*
Ga0134072_100521622	3300015357	Grasslands Soil	LNNNTAGVREREETNRTRVAGHLDEIQGVVANTLKLHRNGAVGFIDWLGLMDVLIWVNKA
Ga0184611_10671413	3300018067	Groundwater Sediment	VREGEDANRTRVAGHLDEIQGVVANTPNMQLNRAVGFIDWLEDIMLWQQTKCNACH
Ga0066667_108060591	3300018433	Grasslands Soil	ERDKPRLALKSNTAGVREREDANRTREAGHLDEIEGAVANTLRFSRQGVVGFIDWLERS
Ga0066667_111981752	3300018433	Grasslands Soil	KPRLALNNITAGVREREDANRTREAGHLDEIQSAVANTLNLFRGGAVGFIDWLGSQSL
Ga0193729_10661161	3300019887	Soil	LNNNTAGVREREDANRTREAGHLDEIQGVVASTPGSLRNGAVGFIDWLDARAP
Ga0193751_11980061	3300019888	Soil	ALDNITAGVREREDANGTREAGRLYEIQGVVANTLNVYRNEAVGFIDWLGLQRVTGA
Ga0193757_10172532	3300020008	Soil	ALNNNTAGVREREDASRTREAGHLDGIQGVVANTLKLPRGGTVGFIDW
Ga0193749_10694631	3300020010	Soil	KPRQSLNNFTAGVREGEQTNRTRVAGSRDEVEGVVANTLDLFRNGAVGFIDWLDRLQSIH
Ga0210382_103765461	3300021080	Groundwater Sediment	RLALNNNTAGVREREDASRTREAGHLDEIQGAVANTPKLLRGGTVGFIDW
Ga0193709_10901602	3300021411	Soil	RERDKPRLALNNNTAGVREREEASRTREAGHVDEIQGAVANTPKLPRGGTVGFIDW
Ga0222622_104987082	3300022756	Groundwater Sediment	NTAGVREREDANRTRVAGHLDEIQGAVASTVNLQCNGALRCHEGLQGVCRQGTRRL
Ga0207685_100353942	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	VLNNNTAGVREREETNRTRVAGHLDEIQGVVASRLKGSRNGDVGFIDWLDSLSELRNTR
Ga0207684_100136781	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	KPRLALKSNTAGVREREDVNRTREAGNRDEVEGVVANTLKSQRNGAVGFIVWLGQRAFES
Ga0207693_102610993	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	ALNNNTAGVREREETNRTRVAGHLDEIQGVVASRLKGSRNGDVGFIDWLDSLSELRNTR
Ga0209375_10478751	3300026329	Soil	MSQRDKPQPALNNITAGVCEREDANRTREAGHLDEIQGVVANTVNVLRGGAVG
Ga0209473_10643931	3300026330	Soil	MSQRDKPQLALNNITAGVREREDANRTREAGHLDEIQGVVANTVNVLRGGAV
Ga0257146_10903651	3300026374	Soil	RDKPRLALNNNTAGVREREETNRTRVAGHLDEIQGVVANTLNLFRNGAVRCHEGL
Ga0257153_10609781	3300026490	Soil	PRLALNNNTAGVREREDANRTREAGHLGEIQGVLARFLAFPRSGVVDFID
Ga0209056_1000043150	3300026538	Soil	LNNITAGVREREDANRTREAGHLDEIQGVVANTLNLFCHGAVGFIDWLGLTT
Ga0179587_104119632	3300026557	Vadose Zone Soil	LALNNNTAGVRERKDANRTRVAGHLDEIQGVVASTMDAFRGGDVGFIDWLDSLSELRNTR
Ga0209488_112028031	3300027903	Vadose Zone Soil	ALNNITAGVREREDANRTRVAGHLDEIQGVVANTRNLYRNGAVAASIG
Ga0247827_111144572	3300028889	Soil	VREREDASRTRKAGHLDEIRGVVANTPKLPRGGTVGFIDWYI
Ga0075374_114043521	3300030855	Soil	TAGVREREDANRTREAGHLDEIQGVVANMLGAFRNGAVGFIGWLGRMDIMAQLL
Ga0170834_1107469982	3300031057	Forest Soil	LNNFTAGVREREDANRTREAGHLDEIQGVVANMLGAFRNGAVGFIGWLGRMDIMAQLL
Ga0170818_1027361182	3300031474	Forest Soil	ALNNITAGVHEREDANRTRETGSLDEIQGAVANTLKLHRDWAVGFIDWLGRLLG
Ga0310811_109007591	3300033475	Soil	ALDNITAGVREREDANRTREAGHLDEIQGVVANTLKLPRYGAVGFTIG

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.15
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.15
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098009

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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