Metagenome / Metatranscriptome Family F098194

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098194
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	88 residues
Representative Sequence	MSDLEFPEWQGPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSSKRRSEEQAIEDALRGLTFLRRETLESKRSQGELVTVPRLQVN
Number of Associated Samples	61
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	73.08 %
% of genes near scaffold ends (potentially truncated)	31.73 %
% of genes from short scaffolds (< 2000 bps)	74.04 %
Associated GOLD sequencing projects	53
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.64

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.500 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (31.731 % of family members)
Environment Ontology (ENVO)	Unclassified (50.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (75.962 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.85% β-sheet: 0.00% Coil/Unstructured: 46.15%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.64
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.64
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF13545	HTH_Crp_2	18.27
PF00990	GGDEF	15.38
PF13426	PAS_9	7.69
PF12732	YtxH	2.88
PF00011	HSP20	1.92
PF04185	Phosphoesterase	1.92
PF00005	ABC_tran	1.92
PF04545	Sigma70_r4	0.96
PF00664	ABC_membrane	0.96
PF00027	cNMP_binding	0.96
PF00930	DPPIV_N	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	1.92
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	1.92
COG0823	Periplasmic component TolB of the Tol biopolymer transport system	Intracellular trafficking, secretion, and vesicular transport [U]	0.96
COG1506	Dipeptidyl aminopeptidase/acylaminoacyl peptidase	Amino acid transport and metabolism [E]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.50 %
Unclassified	root	N/A	37.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.50 %
Unclassified	root	N/A	37.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.50 %
Unclassified	root	N/A	37.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	30.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	9.62 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.92 %
Deinococcus-Thermus	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.62 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.92 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001098\|JGI12633J13313_100565	All Organisms → cellular organisms → Bacteria	2186	Open in IMG/M
3300001098\|JGI12633J13313_101358	All Organisms → cellular organisms → Bacteria	1441	Open in IMG/M
3300001471\|JGI12712J15308_10012989	All Organisms → cellular organisms → Bacteria	2230	Open in IMG/M
3300001867\|JGI12627J18819_10047368	All Organisms → cellular organisms → Bacteria → Acidobacteria	1796	Open in IMG/M
3300002681\|Ga0005471J37259_106595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	930	Open in IMG/M
3300003505\|JGIcombinedJ51221_10378647	Not Available	575	Open in IMG/M
3300004099\|Ga0058900_1425746	All Organisms → cellular organisms → Bacteria → Proteobacteria	1985	Open in IMG/M
3300004118\|Ga0058886_1358203	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1653	Open in IMG/M
3300004135\|Ga0058884_1364672	Not Available	708	Open in IMG/M
3300004139\|Ga0058897_11041984	Not Available	518	Open in IMG/M
3300004631\|Ga0058899_10021947	Not Available	571	Open in IMG/M
3300004631\|Ga0058899_10115019	Not Available	848	Open in IMG/M
3300004631\|Ga0058899_10161246	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300005436\|Ga0070713_100142619	All Organisms → cellular organisms → Bacteria → Acidobacteria	2123	Open in IMG/M
3300005436\|Ga0070713_100637712	Not Available	1014	Open in IMG/M
3300005437\|Ga0070710_11491858	Not Available	508	Open in IMG/M
3300005538\|Ga0070731_10074134	All Organisms → cellular organisms → Bacteria → Acidobacteria	2258	Open in IMG/M
3300005538\|Ga0070731_10130617	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1664	Open in IMG/M
3300005538\|Ga0070731_10352391	All Organisms → cellular organisms → Bacteria	977	Open in IMG/M
3300005541\|Ga0070733_10043251	Not Available	2815	Open in IMG/M
3300005542\|Ga0070732_10087152	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1831	Open in IMG/M
3300005542\|Ga0070732_10193862	All Organisms → cellular organisms → Bacteria	1214	Open in IMG/M
3300005542\|Ga0070732_10339481	Not Available	904	Open in IMG/M
3300005610\|Ga0070763_10068028	All Organisms → cellular organisms → Bacteria	1734	Open in IMG/M
3300005712\|Ga0070764_10556612	Not Available	695	Open in IMG/M
3300005921\|Ga0070766_10324792	All Organisms → cellular organisms → Bacteria	993	Open in IMG/M
3300005921\|Ga0070766_11064566	Not Available	557	Open in IMG/M
3300005921\|Ga0070766_11290739	Not Available	506	Open in IMG/M
3300006028\|Ga0070717_10014627	All Organisms → cellular organisms → Bacteria → Acidobacteria	6041	Open in IMG/M
3300006028\|Ga0070717_10936815	Not Available	789	Open in IMG/M
3300011120\|Ga0150983_12559634	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300011120\|Ga0150983_12945861	Not Available	866	Open in IMG/M
3300011120\|Ga0150983_13791758	All Organisms → cellular organisms → Bacteria → Acidobacteria	1118	Open in IMG/M
3300011120\|Ga0150983_14355533	Not Available	636	Open in IMG/M
3300011120\|Ga0150983_15042787	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1242	Open in IMG/M
3300011120\|Ga0150983_15457257	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	918	Open in IMG/M
3300011120\|Ga0150983_15670416	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300020579\|Ga0210407_10015275	All Organisms → cellular organisms → Bacteria	5702	Open in IMG/M
3300020579\|Ga0210407_10027003	All Organisms → cellular organisms → Bacteria	4271	Open in IMG/M
3300020579\|Ga0210407_10178025	Not Available	1647	Open in IMG/M
3300020580\|Ga0210403_10010655	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7475	Open in IMG/M
3300020580\|Ga0210403_10202392	All Organisms → cellular organisms → Bacteria → Acidobacteria	1629	Open in IMG/M
3300020580\|Ga0210403_10204575	All Organisms → cellular organisms → Bacteria	1620	Open in IMG/M
3300020580\|Ga0210403_11144425	Not Available	602	Open in IMG/M
3300020581\|Ga0210399_10068278	All Organisms → cellular organisms → Bacteria → Acidobacteria	2875	Open in IMG/M
3300020582\|Ga0210395_10473564	Not Available	942	Open in IMG/M
3300020582\|Ga0210395_10580436	Not Available	842	Open in IMG/M
3300020583\|Ga0210401_10026236	All Organisms → cellular organisms → Bacteria → Acidobacteria	5565	Open in IMG/M
3300020583\|Ga0210401_10081590	All Organisms → cellular organisms → Bacteria → Acidobacteria	3043	Open in IMG/M
3300020583\|Ga0210401_11096756	Not Available	654	Open in IMG/M
3300021168\|Ga0210406_10400520	All Organisms → cellular organisms → Bacteria → Acidobacteria	1099	Open in IMG/M
3300021168\|Ga0210406_10717784	Not Available	768	Open in IMG/M
3300021171\|Ga0210405_10018701	All Organisms → cellular organisms → Bacteria	5656	Open in IMG/M
3300021171\|Ga0210405_10089689	All Organisms → cellular organisms → Bacteria	2424	Open in IMG/M
3300021171\|Ga0210405_10359934	All Organisms → cellular organisms → Bacteria → Acidobacteria	1147	Open in IMG/M
3300021171\|Ga0210405_10722088	Not Available	768	Open in IMG/M
3300021178\|Ga0210408_10162696	All Organisms → cellular organisms → Bacteria → Acidobacteria	1770	Open in IMG/M
3300021178\|Ga0210408_10380828	Not Available	1124	Open in IMG/M
3300021401\|Ga0210393_10132141	All Organisms → cellular organisms → Bacteria	2000	Open in IMG/M
3300021402\|Ga0210385_10225142	All Organisms → cellular organisms → Bacteria	1371	Open in IMG/M
3300021404\|Ga0210389_11001228	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300021406\|Ga0210386_10533510	Not Available	1014	Open in IMG/M
3300021406\|Ga0210386_10888972	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300021420\|Ga0210394_10001417	All Organisms → cellular organisms → Bacteria	38655	Open in IMG/M
3300021420\|Ga0210394_10399220	Not Available	1209	Open in IMG/M
3300021474\|Ga0210390_11221376	Not Available	606	Open in IMG/M
3300021475\|Ga0210392_10276629	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1197	Open in IMG/M
3300021479\|Ga0210410_10253096	All Organisms → cellular organisms → Bacteria	1579	Open in IMG/M
3300021559\|Ga0210409_11585622	Not Available	531	Open in IMG/M
3300025906\|Ga0207699_10026934	All Organisms → cellular organisms → Bacteria → Proteobacteria	3176	Open in IMG/M
3300025929\|Ga0207664_10560557	Not Available	1025	Open in IMG/M
3300027371\|Ga0209418_1021640	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M
3300027545\|Ga0209008_1003461	All Organisms → cellular organisms → Bacteria	3764	Open in IMG/M
3300027545\|Ga0209008_1133381	Not Available	549	Open in IMG/M
3300027575\|Ga0209525_1000132	All Organisms → cellular organisms → Bacteria	22685	Open in IMG/M
3300027842\|Ga0209580_10121581	All Organisms → cellular organisms → Bacteria → Acidobacteria	1273	Open in IMG/M
3300027855\|Ga0209693_10017115	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3458	Open in IMG/M
3300027869\|Ga0209579_10003765	All Organisms → cellular organisms → Bacteria → Acidobacteria	10859	Open in IMG/M
3300027869\|Ga0209579_10049218	All Organisms → cellular organisms → Bacteria	2248	Open in IMG/M
3300027879\|Ga0209169_10461476	Not Available	667	Open in IMG/M
3300027884\|Ga0209275_10119064	All Organisms → cellular organisms → Bacteria → Acidobacteria	1371	Open in IMG/M
3300027889\|Ga0209380_10295604	All Organisms → cellular organisms → Bacteria → Acidobacteria	951	Open in IMG/M
3300027889\|Ga0209380_10832590	Not Available	521	Open in IMG/M
3300027908\|Ga0209006_10756679	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300027908\|Ga0209006_11166196	Not Available	604	Open in IMG/M
3300028906\|Ga0308309_10388266	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300030854\|Ga0075385_10823315	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	579	Open in IMG/M
3300031057\|Ga0170834_103520351	Not Available	527	Open in IMG/M
3300031057\|Ga0170834_111056666	Not Available	556	Open in IMG/M
3300031057\|Ga0170834_112160480	Not Available	649	Open in IMG/M
3300031057\|Ga0170834_113096561	All Organisms → cellular organisms → Bacteria	1830	Open in IMG/M
3300031128\|Ga0170823_10588271	Not Available	821	Open in IMG/M
3300031128\|Ga0170823_12362178	Not Available	1299	Open in IMG/M
3300031128\|Ga0170823_13694132	Not Available	528	Open in IMG/M
3300031231\|Ga0170824_116018176	All Organisms → cellular organisms → Bacteria	4104	Open in IMG/M
3300031231\|Ga0170824_125741538	All Organisms → cellular organisms → Bacteria → Acidobacteria	1266	Open in IMG/M
3300031715\|Ga0307476_10244867	All Organisms → cellular organisms → Bacteria → Acidobacteria	1308	Open in IMG/M
3300031718\|Ga0307474_10108611	All Organisms → cellular organisms → Bacteria → Acidobacteria	2077	Open in IMG/M
3300031718\|Ga0307474_11015952	Not Available	656	Open in IMG/M
3300031720\|Ga0307469_10007506	All Organisms → cellular organisms → Bacteria → Acidobacteria	5064	Open in IMG/M
3300031754\|Ga0307475_10590980	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	889	Open in IMG/M
3300031823\|Ga0307478_10518853	All Organisms → cellular organisms → Bacteria → Acidobacteria	994	Open in IMG/M
3300031962\|Ga0307479_10027886	All Organisms → cellular organisms → Bacteria	5369	Open in IMG/M
3300032205\|Ga0307472_100041471	All Organisms → cellular organisms → Bacteria → Acidobacteria	2786	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.69%
Loam	Environmental → Terrestrial → Soil → Loam	42.31%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	48.08%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	35.58%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.73%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	31.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	25.00%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	10.58%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	9.62%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	8.65%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.69%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001098	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1	Environmental	Open in IMG/M
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002681	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF120 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004099	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF236 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004118	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF208 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004135	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027575	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030854	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB2 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12633J13313_1005653	3300001098	Forest Soil	VGGGGLTMSNIEFPEWQEPYLEALMETDQRKLVGRVKFAEKTILLRLEEIQSSSQRRAEEQAIEDALRALTFLRRESIELETSQGEFLATSQLQVN*
JGI12633J13313_1013581	3300001098	Forest Soil	MSDLEFPEWQGPYMEALMETDHEKLVGRVDFAERAIFLRLKEIQSSSKRRSEEQAIENALMGLTLLRRETLESKRSQGELVTPPQLQVN*
JGI12712J15308_100129896	3300001471	Forest Soil	MSDLEFPEWQGPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSSKRRSEEQAIENALMGLTLLRKETLESKRSQGELLTPPQLQVN*
JGI12627J18819_100473682	3300001867	Forest Soil	MSDLEFPEWQGPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSAKRRSEEQAIENALMGLTLLRRETLESKRSEGELVTPPQLQVN*
Ga0005471J37259_1065952	3300002681	Forest Soil	MSDLEFPEWQGPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSSKRRSEEQAIEDALRGLTFLRRETLESKESRGELLTTTEPRVN*
JGIcombinedJ51221_103786472	3300003505	Forest Soil	MSNLEFPEWQEPYLEALMETDQRKLVGRVDLAERTIFLRLNEIQNSSKRRAEEQAIEDALRALTFLRRETVEFKTSQGEPLSTTQSEVN*
Ga0058900_14257462	3300004099	Forest Soil	MSDLEFPEWQGPYMEALMETDQGKLVGRVDFAERAIFLRLKEIQSSSKRRSEEQAIENALMGLTLLRRETLEFKRSEGELVAPPPLQVN*
Ga0058886_13582032	3300004118	Forest Soil	MSDLEFPEWQGPYMEALMETDQGKLVGRVDFAERAIFLRLKEIQSSSKRRLEEQAIENALMGLTLLRRETLESKRSQGELVTPPQLQVN*
Ga0058884_13646721	3300004135	Forest Soil	MSDLEFPEWQGPYMEALMETDQGKLVGRVDFAERAIFLRLKEIQSSSKRRSEEQAIENALMGLTLLRRETLESKRSQGELVTVPQLQVN*
Ga0058897_110419841	3300004139	Forest Soil	QDEAAPSGGLTMSDLEFPEWQEPYLEALMETDRLKIVGRVDLAERTIFTRLKEIQSNSKRRSEEQAIEDALRALTFLRRETVEFKTWQGEPLSTTQSQVN*
Ga0058899_100219471	3300004631	Forest Soil	GPYLEALMETDQRKLVGRVDFAERAILGRLKEIQSSSKRRTEERAIEDALRGLTFLKKETLEFTRSQGRLLTRIQSRVN*
Ga0058899_101150191	3300004631	Forest Soil	LEFPEWQEPYLEALMETDRLKIVGRVDLAERTIFTRLKEIQSSSKRRSEEQAIEDALRALTFLRRETVEFKTWQGKPLITTQSQLTDRYVTSLATPQRSWLV*
Ga0058899_101612463	3300004631	Forest Soil	GGLTMSDLEFPEWQGPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSAKRHSEEQAIENALMGLTLLRRETLESKRSQGELVTVPRLQVN*
Ga0070713_1001426191	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSDLEFPEWQGPYMEALMETDQGKLVGRVDFAERTIFLRLKEIQSSSKRRLEEQAIENALMGLTLLRRETLESKRSQGELVTVPRLQVN*
Ga0070713_1006377122	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSDLEFPEWQEPYLEALMETDQRKLVGRVDLAERTIFLRLKEIQSSSKKGSEEQAIEDALRALTLLRKETVEFKTSQAKPPATTRSQVN*
Ga0070710_114918581	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LEFPEWQGPYMEALMETDREKLVGRVDFAERAIFLRLKEIQSSAKRRSEEQAIENALMGLTLLRRETLESKRSEGELVSPPQLQVN*
Ga0070731_100741342	3300005538	Surface Soil	MSDLEFPEWQGPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSSKRRSEEQAIEDALRGLTFLRRETLESKRSQGELVTVPRLQVN*
Ga0070731_101306171	3300005538	Surface Soil	MTDLEFPEWQRPYLEALMETDHGKLVGRVDFAERAILGRLKEIQSSSKRHTEEQAIEDALRGLIFLKRETLEFKGSQGQLLTRIQSR
Ga0070731_103523912	3300005538	Surface Soil	MSDLEFPEWQGPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSAKRHSEEQAIENALMGLTLLRRETLESKRSQGELVTVPRLQVN*
Ga0070733_100432512	3300005541	Surface Soil	MTDLEFPEWQGPYLEALMETDHGKLVGRVDFAERAILGRLKEIQSSSKRHTEEQAIEDALRGLIFLKRETLEFKGSQGQLLTRIQSRVN*
Ga0070732_100871523	3300005542	Surface Soil	MTDLEFPEWQGPYLEALMETDHGKLVGRVDFAERAILGRLKEIQSSSKRHTEEQAIEDALRGLIFLKRETLEFKVSQGQLCSAPR*
Ga0070732_101938621	3300005542	Surface Soil	EWQEPYLEALMETDQRKLVGRVDLAERTIFLRLKEIQSSSKRRAEEQAIEDALRALSFLRRETVEFKMWQGEPLRTTQSEVN*
Ga0070732_103394812	3300005542	Surface Soil	MSDLEFPEWQEPYLEALMETDRLKIVGRVDLAERTIFTRLKEIQSSSKRRAEEQAIEDALRALTFLRRETVEFKTWQGEPLSTTQSQVN*
Ga0070763_100680283	3300005610	Soil	MSDLEFPEWQGPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSVKRRSEEQAIENALMGLTLLRRETLESKRSQGELVTPPQLQVN*
Ga0070764_105566121	3300005712	Soil	MTDLEFPEWQGPYLEALMETDQRKLVGRVDFAERAILGRLKEIQSSSKRRTEEQAIEDALRGLTFLKKETLEFTRSQGRLLTRIQSRVN*
Ga0070766_103247921	3300005921	Soil	SDLEFPEWQGPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSAKRHSEEQAIENALMGLTLLRRETLEFKRSEGELVAPPPLQVN*
Ga0070766_110645661	3300005921	Soil	MSDLEFPEWQGPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSAKRRSEEQAIENALMGLTLLRRETLESKRSQGELVTPPQLQVN*
Ga0070766_112907391	3300005921	Soil	ASTAKGRPKGRAVRITDDRPEWQGPYLEALMETDRRKLVGRVDFAERAIFVRLKEIQSSSKRRTEEQAIEDAFRGLTFLKRETLEFTRSQGQLLTRIRSRVN*
Ga0070717_100146276	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MEALMETDQGKVVRRIDLAERTIFLRLKEIQSSSKGRSEEQAIEDALRGLTFLRRETLESKESQGELLTTTQPRVN*
Ga0070717_109368151	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	EALMETDQRKLVGRVDFAERAILGRLKEIQSSPKRHTEEQAIEDALRGLIFLKRETLEFKRSQGQLLTRIQSRVN*
Ga0150983_125596341	3300011120	Forest Soil	GPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSAKRRSEEQAIENALMGLTLLRRETLESKRSQGELVTPPQLQVN*
Ga0150983_129458611	3300011120	Forest Soil	LEFPEWQEPYLEALMETDRLKIVGRVDLAERTIFTRLKEIPSSSKRRSEEQAIEDALRALTFLRRETVEFKTWQGKPLITTQSQVN*
Ga0150983_137917582	3300011120	Forest Soil	MSDLEFPEWQGPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSSKRRLEEQAIENALMGLTLLRRETLESKRSQGELVTPPQLQVN*
Ga0150983_143555331	3300011120	Forest Soil	GGLAMTDLEFPEWQGPYLEALMETDQRKLVGRVDFAERAILGRLKEIQSSSKRRTEEQAIEDALRGLTFLKKETLEFTRSQGRLLTRIQSRVN*
Ga0150983_150427871	3300011120	Forest Soil	MSDLEFPEWQEPYLEALMETDKRKLVGRVDFAERAIFLRLKEIQSSSKRRPEEQSIEVALRGLSFLKREILEFKRSQGQLVTIAQSQVN*
Ga0150983_154572571	3300011120	Forest Soil	GLAMTDLEFPEWQGPYLEALMETDQRKLVGRVDFAERAILGRLKEIQSSSKRHTEEQAIEDALRGLIFLKRETLEFKGSQGQLLTRIQSRDN*
Ga0150983_156704161	3300011120	Forest Soil	PYLEALMETDQRKLVGRVDLAERTIFLRLNEIQNSSKRRAEEQAIEDALRALTFLRRETVEFKTSQGEPLSTTQSEVN*
Ga0210407_100152754	3300020579	Soil	MSDLEFPEWQEPYLEALMETDRLKIVGRVDLAERTIFTRLKEIQSNSKRRSEEQAIEDALRALTFLRRETVEFKTWQGEPLSTTQSQVN
Ga0210407_100270036	3300020579	Soil	MSDLEFPEWQGPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSSKRRSEEQAIEDALRGLTFLRRETLESKESRGELLTTTEPRVN
Ga0210407_101780253	3300020579	Soil	METDQRKLVGRVDFAERAIFVRLKEIQSSSKRRTEEQAIEDALRGLTFLKKETQEFTRSQGRLLTRIQSRVN
Ga0210403_1001065512	3300020580	Soil	MTDLEFPEWQGPYLEALMETDQRKLVGRVDFAERAIFVRLKEIQSSSKRRTEEQAIEDALRGLTFLKKETQEFTRSQGRLLTRIQSRVN
Ga0210403_102023923	3300020580	Soil	MSDLEFPEWQGPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSSKRRSEEQAIEDALRGLTLLRRETLESKRSQGELVTVPRLQVN
Ga0210403_102045751	3300020580	Soil	EWQEPYLEALLETDRLKIVGRVDLAERTIFTRLKEIQSNSKRRSEEQAIEDALRALTFLRRETVEFKTWQGEPLSTTQSQVN
Ga0210403_111444252	3300020580	Soil	MSNLEFPEWQEPYLEALMETDQQKLVGRVDLAERTIFLRLNEIQNSSKRRAEEQAIEDALRALTFLRRETVEFKTSQGEPLSTTQSEVN
Ga0210399_100682783	3300020581	Soil	MTDLEFPEWQGPYLEALMETDQRKLVGRVDFAERAILGRLKEIQSSSKRHTEEQAIEDALRGLIFLKRETLEFKGSQGQLLTRIQSRVN
Ga0210395_104735642	3300020582	Soil	MSDLEFPEWQEPYLEALMETDRLKIVGRVDLAERTIFTRLKEIQSSSKRRSEEQAIEDALRALTFLRRETVEFKTWQGEPLSTTQSQVN
Ga0210395_105804361	3300020582	Soil	MSDLEFREWQEPYLEALMETDQRKLAGRVDLAERTIFLRLKEIQSSSKRHSEEQAIEDALRALTFLRREIEFKTWQGEPLSTNQSQVN
Ga0210401_100262362	3300020583	Soil	MTDLEFPEWQGPYLEALMETDQRKLVARVDFAERAILGRLKEIQSSSKRRTEEQAIEDALRGLTFLKRETLEFTRSQGQLLTRIQSRVN
Ga0210401_100815903	3300020583	Soil	MSDLEFPEWQGPYMEALMETDQGKLVGRVDFAERAIFLRLKEIQSSSKRRSEEQAIENALMGLTLLRRETLEFKRSEGELVAPPPLQVN
Ga0210401_110967561	3300020583	Soil	MSDLEFPEWQGPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSSKRRLEEQAIENALMGLTLLRRETLESKRSQGELVTPPQLQVN
Ga0210406_104005202	3300021168	Soil	MSDLEFPEWQGPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSSKRRSEEQAIEDALRGLTFLRRETLESKESRGELLTTT
Ga0210406_107177841	3300021168	Soil	MSELEFPEWQGPYMEALMETDQGKLVGRIDLAERTIFLRLKEIQSSSKRRSEEQAIEDALRGLTFLRRETLESKESRGELLTTTEPRVN
Ga0210405_100187013	3300021171	Soil	MSNLEFPEWQEPYLEALMETDQRKLIGLVKFAEKTILLRLEEIQSSSKRRAEGQAIEDALRALTFLRRETTELETSQGEFLATGQLRVN
Ga0210405_100896894	3300021171	Soil	MSDLEFPEWQGPYMEALMETDQGKLVGRVDFAERAIFLRLKEIQSSSKRGSEEQAIENALMGLTLLRRETLESKRSQGELLTVPQLQVN
Ga0210405_103599343	3300021171	Soil	MSDLEFPEWQGPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSVKRRSEEQAIENALMGLTLLRRETLESKRSQGELVTPPQLQVN
Ga0210405_107220882	3300021171	Soil	MSNLEFPEWQEPYLEALMETDQRKLVGRVDLAERTIFLRLNEIQNSSKRRAEEQAIEDALRALTFLRRETVEFKTSQGEPLSTTQSEVN
Ga0210408_101626961	3300021178	Soil	MSDLEFPEWQGPYMEALMETDQGKLVGRVDFAERAIFLRLKEIQSSSKRRSEEQAIENALMGLTLLRRETLEFKRSEGELVAPPPLQV
Ga0210408_103808282	3300021178	Soil	MSNLEFPEWQEPYLEALIETDQRKLVGRVDLAERTIFLRLNEIQNSSKRRAEEQAIEDALRALTFLRRETVEFKTSQGEPLSTTQSEVN
Ga0210393_101321411	3300021401	Soil	EFPEWQEPYLEALMETDRLKIVGRVDLAERTIFTRLKEIQSNSKRRSEEQAIEDALRALTFLRRETVEFKTWQGEPLSTTQSQVN
Ga0210385_102251421	3300021402	Soil	MSDLEFPEWQGPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSSKRRSEEQAIENALMGLTLLRRETLEFKRSEGELVAPPPLQVN
Ga0210389_110012281	3300021404	Soil	FPEWQGPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSSKRRSEEQAIENALMGLTLLRRETLEFKRSEGELVAPPPLQVN
Ga0210386_105335102	3300021406	Soil	MSDLEFPEWQEPYLEALMETDRLKIVGRVDLAERTIFTRLKEIQSSSKRRSEEQAIEDALRALTFLRRETVEFKTWQGKPLITTQSQVN
Ga0210386_108889721	3300021406	Soil	FPEWQGPYMEALMETDQGKLVGRVDFAERAIFLRLKEIQSSSKRRLEEQAIENALMGLTLLRRETLESKRSQGELVTPPQLQVN
Ga0210394_1000141715	3300021420	Soil	METDQRKLVGRVDLAERTIFLRLKEIQSSSKRRAEEQAIEDALRALSFLRRETAEFKAPQGEPLSTTQSQVN
Ga0210394_103992202	3300021420	Soil	MSDLEFPEWQEPYLEALLETDRLKIVGRVDLAERTIFTRLKEIQSNSKRRSEEQAIEDALRALTFLRRETVEFKTWQGEPLSTTQSQVN
Ga0210390_112213762	3300021474	Soil	MSNLEFPEWQEPYLEALMETDQRKLVGRVDLAERTIFLRLNEIQNSSKRRAEEQAIEDALRALTFLRRETVEFKTSQGEPLSTTQSEV
Ga0210392_102766291	3300021475	Soil	MTDLEFPEWQGPYLEALMETDQRKLVGRVDFAERAIFVRLKEIQSSSKRRTEEQAIEDALRGLTFLKKEIQEFTRSQGRLLTRIQSRVN
Ga0210410_102530961	3300021479	Soil	APSGGLTMSDLEFPEWQEPYLEALMETDRLKIVGRVDLAERTIFTRLKEIQSSSKRRSEEQAIEDALRALTFLRRETVEFKTWQGEPLSTTQSQVN
Ga0210409_115856221	3300021559	Soil	GGLAMTDLEFPEWQGPYLEALMETDQRKLVGRVDFAERAIFVRLKEIQSSSKRRTEEQAIEDALRGLTFLKKETLEFTRSQGRLLTRIQSRVN
Ga0207699_100269347	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MSDLEFPEWQEPYLEALMETDQRKLVGRVDLAERTIFLRLKEIQSSSKRGSEEQAIEDALRALTLLRKETVEFKTSQAKPPATTRSQVN
Ga0207664_105605573	3300025929	Agricultural Soil	MSDLEFPEWQEPYLEALMETDQRKLVGRVDLAERTIFLRLKEIQSSSKRRTEEQAIEDALRGLIFLKSETLEFKRSQGQ
Ga0209418_10216403	3300027371	Forest Soil	MSDLEFPEWQGPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSAKRRSEEQAIENALMGLTLLRRETLESKRSEGELVTPPQLQVN
Ga0209008_10034612	3300027545	Forest Soil	VGGGGLTMSNIEFPEWQEPYLEALMETDQRKLVGRVKFAEKTILLRLEEIQSSSQRRAEEQAIEDALRALTFLRRESIELETSQGEFLATSQLQVN
Ga0209008_11333812	3300027545	Forest Soil	MSDLEFPEWQGPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSSKRRSEEQAIENALMGLTLLRKETLESKRSQGELLTPPQLQVN
Ga0209525_100013219	3300027575	Forest Soil	MSDLEFPEWQGPYMEALMETDHEKLVGRVDFAERAIFLRLKEIQSSSKRRSEEQAIENALMGLTLLRRETLESKRSQGELVTPPQLQVN
Ga0209580_101215812	3300027842	Surface Soil	MSDLEFPEWQEPYLEALMETDRLKIVGRVDLAERTIFTRLKEIQSSSKRRAEEQAIEDALRALTFLRRETVEFKTWQGEPLSTTQSQVN
Ga0209693_100171155	3300027855	Soil	MTDLEFPEWQGPYLEALMETDQRKLVGRVDFAERAILVRLKEIQSSSKRRTEEQAIEDALRGLTFLKKETLEFTRSQGRLLTRIQSRVN
Ga0209579_1000376510	3300027869	Surface Soil	MTDLEFPEWQRPYLEALMETDHGKLVGRVDFAERAILGRLKEIQSSSKRHTEEQAIEDALRGLIFLKRETLEFKGSQGQLLTRIQSRVN
Ga0209579_100492186	3300027869	Surface Soil	MSDLEFPEWQGPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSSKRRSEEQAIEDALRGLTFLRRETLESKRSQGELVTVPRLQVN
Ga0209169_104614761	3300027879	Soil	MTDLEFPEWQGPYLEALMETDQRKLVGRVDFAERAILGRLKEIQSSSKRRTEEQAIEDALRGLTFLKKETLEFTRSQGRLLTRIQSRVN
Ga0209275_101190642	3300027884	Soil	MSDLEFPEWQGPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSAKRHSEEQAIENALMGLTLLRRETLESKRSQGELVTVPRLQVN
Ga0209380_102956042	3300027889	Soil	MSDLEFPEWQGPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSAKRHSEEQAIENALMGLTLLRRETLESKRSQGELVTPPQLQVN
Ga0209380_108325901	3300027889	Soil	ASTAKGRPKGRAVRITDDRPEWQGPYLEALMETDRRKLVGRVDFAERAIFVRLKEIQSSSKRRTEEQAIEDAFRGLTFLKRETLEFTRSQGQLLTRIRSRVN
Ga0209006_107566791	3300027908	Forest Soil	KQSKAGSGGLTMSDLEFPEWQGPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSSKRRSEEQAIENALMGLTLLRKETLESKRSQGELLTPPQLQVN
Ga0209006_111661962	3300027908	Forest Soil	KQSKAGSGGLTMSDLEFPEWQGPYMEALMETDHEKLVGRVDFAERAIFLRLKEIQSSSKRRSEEQAIENALMGLTLLRRETLESKRSQGELVTPPQLQVN
Ga0308309_103882663	3300028906	Soil	MSDLEFPEWQGPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSAKRRSEEQAIENALMGLTLLRRETLESKRSQGELVTPPQLQVN
Ga0075385_108233151	3300030854	Soil	FPEWQETYLEALMETDQRKLVGRVDLAERTILLRLKEIQSSSKRRSEEQAIEDALRALTLLRRETVEFKTSQGELLATTQSQVN
Ga0170834_1035203512	3300031057	Forest Soil	MSNLEFPEWQEPYLEALMETDQRKLVGRVKFAEKTILLRLEEIQSSSKRRAEEQAIEDALRALTFLRRESIELETSQGEFLDTSQLQVN
Ga0170834_1110566662	3300031057	Forest Soil	LTMIDLEFPEWQGPYMEALMETDQEKLVGRVDFAERAIFLRLKEIQSSSKRRLEEQAIENALMGLTLLRRETLESKRSQGELVTPPQLQVN
Ga0170834_1121604801	3300031057	Forest Soil	MSNLEFPEWQEPYLEALMETDQWQLVGRVDLAERTILLRLKEIQSSSKRGLEERAIEDALRALTFIRRENVEFKTSQAELRATSQSQVN
Ga0170834_1130965613	3300031057	Forest Soil	MSDLEFPEWQETYLEALMETDQRKLVGRVDLAERTIFLRLKAIQSSSKRRSEEQAIEDALRALTLLRRETVEFKTSQGELLATTQSQVN
Ga0170823_105882711	3300031128	Forest Soil	MTDLEFSEWQGPYLEALMETDQRKLVERVDFAERAILGRLKEIQNSSKRHTEELAIEDALRGLTFLKRETLEFTRSQGQLLTRIQSRPN
Ga0170823_123621781	3300031128	Forest Soil	MSNLEFPEWQEPYLEALMETDQWQLVGRVDLAERTILLRLKEIQSSSKRGLEERAIEDALRALTFIRRENVEFKTSQAELRATS
Ga0170823_136941321	3300031128	Forest Soil	WQGPYLEALMETDQRKLVGRVDFAERAIFLRLKEIQSSSKRRLEEQAIENALMGLTLLRRETLESKRSQGELVTPPQLQVN
Ga0170824_1160181765	3300031231	Forest Soil	MSDLEFPEWQETYLEALMETDQRKLVGRVDLAERTIFLRLKAIQSSSKRRPEEQAIEDALRALTLLRRETVEFKTSQGELLATTQSQVN
Ga0170824_1257415382	3300031231	Forest Soil	MTDLEFPEWQEPYLDALMETDQRQLVGRVDFAERAILGRLKEIQSSSKRRTEEQAIEDALRGLTFLKRETLEFTKSQGQLLTRIQSRVN
Ga0307476_102448672	3300031715	Hardwood Forest Soil	MSDLEFPEWQGPYMEALMETDQGKLVGRVDFAERAIFLRLKEIQSSSKRRSEEQAIEDALRGLTFLRRETLESKRSQGELVTVPRLQVN
Ga0307474_101086112	3300031718	Hardwood Forest Soil	MSDLEFPEWQGPYMEALMETDQGKLVGRVDFAERAIFLRLKEIQSSSKRRSEEQAIENALMGLTLLRRETLESKRSQGELVTVPRLQVN
Ga0307474_110159522	3300031718	Hardwood Forest Soil	MSNLEFPEWQEPYLEALMETDRRKLVGRVGLAERTIFLRLNEIQNSSKRRAEEQAIEDALRALTFLRRETVEFKTSQGEPLSTTQSEVN
Ga0307469_100075067	3300031720	Hardwood Forest Soil	MSDLEFPEWQGPYMEALMETDQGKLVGRVDFAERAIFLRLKEIQSSSKRRSEEQAIENALMGLTLLRRETLESKRSEGELVTLPQLEVN
Ga0307475_105909802	3300031754	Hardwood Forest Soil	LMETDQRKLVGRVDFAERTIFVRLKEIQSSSKRHTEEQAIEDALRGLTFLKKETLEFTRSQGQLLTRIQSRVN
Ga0307478_105188532	3300031823	Hardwood Forest Soil	MGDLEFPEWQGPYMEALMETDQGKLVGRVDFAERAIFLRLKEIQSSSKRRSEEQAIEDALRGLTFLRRETLESKRSQGELVTVPRLQVN
Ga0307479_100278866	3300031962	Hardwood Forest Soil	MSNLEFPEWQEPYLEALMETDQRKLVGRVGLAERTIFLRLNEIQNSSKRRAEEQAIEDALRALTFLRRETVEFKTSQGEPLSTTQSEVN
Ga0307472_1000414711	3300032205	Hardwood Forest Soil	MSDLEFPEWQGPYMEALMETDQGKLVGRVEFAERTIFLRLKEIQSSSKRRSEEQAIENALMGLTLLRKETLESKRSQGELVAVPRLQVN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098194

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences