Metagenome / Metatranscriptome Family F098244

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098244
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	47 residues
Representative Sequence	MLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLHHQTAD
Number of Associated Samples	71
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	76.47 %
% of genes near scaffold ends (potentially truncated)	59.62 %
% of genes from short scaffolds (< 2000 bps)	88.46 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.76

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (65.385 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (19.231 % of family members)
Environment Ontology (ENVO)	Unclassified (38.462 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (64.423 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.13% β-sheet: 0.00% Coil/Unstructured: 44.87%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.76
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.76
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.24.16.0: automated matches	d1wola_	1wol	0.9185
a.25.1.1: Ferritin	d3pwfa1	3pwf	0.90565
f.14.1.4: TRPM-like (melastatin-like transient receptor potential) channels	d6bcoa2	6bco	0.90457
a.25.1.1: Ferritin	d4iwka_	4iwk	0.90384
a.25.1.1: Ferritin	d1j30a_	1j30	0.89931

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF13460	NAD_binding_10	1.92
PF08281	Sigma70_r4_2	1.92
PF12833	HTH_18	1.92
PF04542	Sigma70_r2	1.92
PF13531	SBP_bac_11	0.96
PF00027	cNMP_binding	0.96
PF01381	HTH_3	0.96
PF00196	GerE	0.96
PF04392	ABC_sub_bind	0.96
PF01068	DNA_ligase_A_M	0.96
PF03404	Mo-co_dimer	0.96
PF01370	Epimerase	0.96
PF12625	Arabinose_bd	0.96
PF05425	CopD	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.92
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.92
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.92
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.92
COG1276	Putative copper export protein	Inorganic ion transport and metabolism [P]	0.96
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.96
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.96
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.38 %
All Organisms	root	All Organisms	34.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.38 %
cellular organisms	root	All Organisms → cellular organisms	34.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.38 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	34.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.38 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	28.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.38 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	26.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.38 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	22.12 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.88 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	22.12 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.92 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	22.12 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.96 %
Caballeronia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig886647	Not Available	565	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1013040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1337	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1021408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1216	Open in IMG/M
3300000789\|JGI1027J11758_12764447	Not Available	826	Open in IMG/M
3300001431\|F14TB_102574917	Not Available	662	Open in IMG/M
3300004081\|Ga0063454_101176337	Not Available	632	Open in IMG/M
3300005332\|Ga0066388_100027103	All Organisms → cellular organisms → Bacteria	5254	Open in IMG/M
3300005332\|Ga0066388_100297867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2257	Open in IMG/M
3300005332\|Ga0066388_101198789	Not Available	1297	Open in IMG/M
3300005332\|Ga0066388_103584665	Not Available	792	Open in IMG/M
3300005332\|Ga0066388_104404359	Not Available	717	Open in IMG/M
3300005332\|Ga0066388_104442519	Not Available	714	Open in IMG/M
3300005332\|Ga0066388_104489506	Not Available	711	Open in IMG/M
3300005332\|Ga0066388_105871286	Not Available	620	Open in IMG/M
3300005363\|Ga0008090_10047463	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300005363\|Ga0008090_15836722	Not Available	720	Open in IMG/M
3300005435\|Ga0070714_100462872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1206	Open in IMG/M
3300005436\|Ga0070713_100536403	All Organisms → cellular organisms → Bacteria	1107	Open in IMG/M
3300005451\|Ga0066681_10582742	Not Available	690	Open in IMG/M
3300005713\|Ga0066905_100186080	All Organisms → cellular organisms → Bacteria → Proteobacteria	1537	Open in IMG/M
3300005713\|Ga0066905_100391166	Not Available	1124	Open in IMG/M
3300005713\|Ga0066905_102325203	Not Available	501	Open in IMG/M
3300005764\|Ga0066903_100699510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1786	Open in IMG/M
3300005764\|Ga0066903_101393635	Not Available	1316	Open in IMG/M
3300005764\|Ga0066903_102004856	Not Available	1112	Open in IMG/M
3300005764\|Ga0066903_102354875	Not Available	1029	Open in IMG/M
3300005764\|Ga0066903_103893148	Not Available	801	Open in IMG/M
3300005764\|Ga0066903_104959379	Not Available	706	Open in IMG/M
3300005764\|Ga0066903_106989444	Not Available	585	Open in IMG/M
3300005764\|Ga0066903_108500347	Not Available	523	Open in IMG/M
3300005764\|Ga0066903_108525419	Not Available	522	Open in IMG/M
3300005937\|Ga0081455_10121463	All Organisms → cellular organisms → Bacteria	2058	Open in IMG/M
3300005981\|Ga0081538_10012292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6872	Open in IMG/M
3300006028\|Ga0070717_11480409	Not Available	616	Open in IMG/M
3300006051\|Ga0075364_10820645	Not Available	634	Open in IMG/M
3300006844\|Ga0075428_100935661	Not Available	919	Open in IMG/M
3300009100\|Ga0075418_10214760	Not Available	2048	Open in IMG/M
3300009100\|Ga0075418_11312289	Not Available	785	Open in IMG/M
3300009100\|Ga0075418_11808137	Not Available	665	Open in IMG/M
3300009137\|Ga0066709_101991165	Not Available	805	Open in IMG/M
3300009792\|Ga0126374_10801611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia	720	Open in IMG/M
3300010043\|Ga0126380_10141614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1524	Open in IMG/M
3300010043\|Ga0126380_10166374	Not Available	1434	Open in IMG/M
3300010043\|Ga0126380_10884514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	740	Open in IMG/M
3300010046\|Ga0126384_11788069	Not Available	583	Open in IMG/M
3300010047\|Ga0126382_12026381	Not Available	548	Open in IMG/M
3300010361\|Ga0126378_11096602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	897	Open in IMG/M
3300010366\|Ga0126379_12076856	Not Available	670	Open in IMG/M
3300010366\|Ga0126379_12232199	Not Available	648	Open in IMG/M
3300010366\|Ga0126379_13152892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	552	Open in IMG/M
3300015371\|Ga0132258_12070129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1431	Open in IMG/M
3300015372\|Ga0132256_101045878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	931	Open in IMG/M
3300015373\|Ga0132257_100133841	All Organisms → cellular organisms → Bacteria	2891	Open in IMG/M
3300016319\|Ga0182033_11297025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	654	Open in IMG/M
3300016341\|Ga0182035_11135017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	696	Open in IMG/M
3300016357\|Ga0182032_10818693	Not Available	788	Open in IMG/M
3300016387\|Ga0182040_11205945	Not Available	637	Open in IMG/M
3300016422\|Ga0182039_10078629	Not Available	2362	Open in IMG/M
3300016422\|Ga0182039_10993283	Not Available	752	Open in IMG/M
3300016445\|Ga0182038_10474636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1063	Open in IMG/M
3300019767\|Ga0190267_11162162	Not Available	561	Open in IMG/M
3300021080\|Ga0210382_10425135	Not Available	588	Open in IMG/M
3300021170\|Ga0210400_11546791	Not Available	525	Open in IMG/M
3300021560\|Ga0126371_11428734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	822	Open in IMG/M
3300021560\|Ga0126371_11961321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	704	Open in IMG/M
3300021560\|Ga0126371_12261401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	657	Open in IMG/M
3300027663\|Ga0208990_1112290	Not Available	747	Open in IMG/M
3300027909\|Ga0209382_11048378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	846	Open in IMG/M
3300028787\|Ga0307323_10329607	Not Available	547	Open in IMG/M
3300028793\|Ga0307299_10311170	Not Available	591	Open in IMG/M
3300028819\|Ga0307296_10157550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1228	Open in IMG/M
3300031545\|Ga0318541_10009784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4269	Open in IMG/M
3300031573\|Ga0310915_10513331	Not Available	851	Open in IMG/M
3300031679\|Ga0318561_10633553	Not Available	588	Open in IMG/M
3300031682\|Ga0318560_10532705	Not Available	636	Open in IMG/M
3300031719\|Ga0306917_11006859	Not Available	650	Open in IMG/M
3300031724\|Ga0318500_10392149	Not Available	689	Open in IMG/M
3300031744\|Ga0306918_10596724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	865	Open in IMG/M
3300031763\|Ga0318537_10073741	Not Available	1252	Open in IMG/M
3300031764\|Ga0318535_10271155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	759	Open in IMG/M
3300031771\|Ga0318546_10555766	Not Available	806	Open in IMG/M
3300031896\|Ga0318551_10168395	Not Available	1202	Open in IMG/M
3300031910\|Ga0306923_10385750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1595	Open in IMG/M
3300031910\|Ga0306923_10410675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1539	Open in IMG/M
3300031910\|Ga0306923_10942397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	942	Open in IMG/M
3300031941\|Ga0310912_11440991	Not Available	519	Open in IMG/M
3300031945\|Ga0310913_10011310	Not Available	5346	Open in IMG/M
3300031945\|Ga0310913_10143749	Not Available	1644	Open in IMG/M
3300031947\|Ga0310909_10906931	Not Available	723	Open in IMG/M
3300031954\|Ga0306926_11593826	Not Available	749	Open in IMG/M
3300032001\|Ga0306922_12215037	Not Available	529	Open in IMG/M
3300032041\|Ga0318549_10072974	Not Available	1459	Open in IMG/M
3300032051\|Ga0318532_10057593	All Organisms → cellular organisms → Bacteria	1340	Open in IMG/M
3300032060\|Ga0318505_10372984	Not Available	674	Open in IMG/M
3300032076\|Ga0306924_10233718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2111	Open in IMG/M
3300032090\|Ga0318518_10436135	Not Available	671	Open in IMG/M
3300032180\|Ga0307471_101863403	Not Available	752	Open in IMG/M
3300032261\|Ga0306920_102245766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	757	Open in IMG/M
3300032261\|Ga0306920_102673780	Not Available	682	Open in IMG/M
3300032261\|Ga0306920_103196201	Not Available	613	Open in IMG/M
3300033289\|Ga0310914_10448884	Not Available	1167	Open in IMG/M
3300033551\|Ga0247830_10980160	Not Available	674	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.42%
Host-Associated	Host-Associated	10.58%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.46%
Plants	Host-Associated → Plants	10.58%
Aquatic	Environmental → Aquatic	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.77%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.88%
Roots	Host-Associated → Plants → Roots	1.92%
Freshwater	Environmental → Aquatic → Freshwater	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.46%
Loam	Environmental → Terrestrial → Soil → Loam	25.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.92%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.96%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	39.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	20.19%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.88%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.23%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	19.23%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.46%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.92%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.92%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.96%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.96%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.96%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_09992020	2124908045	Soil	MLTWDDYRELAARCIELADESSEPSVAEALRALAADYLTRGDKLYSEAAE
AF_2010_repII_A01DRAFT_10130405	3300000580	Forest Soil	MLTSNDYKELAARCAELASESSEPTMAEALRALASDYL
AF_2010_repII_A100DRAFT_10214084	3300000655	Forest Soil	AMLTSNDYKELAARCTELASEFSEPAVAEALRALASDYLAHAVKLHHQTAD*
JGI1027J11758_127644472	3300000789	Soil	MLTWDDYRELAARCIELADESSEPSVAAALRALAADYLARGAKLYS*
F14TB_1025749172	3300001431	Soil	MLTSNDYKELAARCTELASESSEPTVAEALMALASDYLARAAKLHRQTAD*
Ga0063454_1011763371	3300004081	Soil	MLIADDYRELAARCIELAGESSEPSVAEALRALAADYLARGGKLYREAAE*
Ga0066388_1000271031	3300005332	Tropical Forest Soil	MLTSNDYKELAARCIELASESSEPTVAEALMTLASDYLARAAKLHRQTAN*
Ga0066388_1002978671	3300005332	Tropical Forest Soil	DYKELAARCTELASESSEPTVAEALRALASDYLARAAKLHHQTAD*
Ga0066388_1011987892	3300005332	Tropical Forest Soil	MLTSNDYKELAARCTELASECSEPTVAEPLRALALDYLARAAKLHYQTAD*
Ga0066388_1035846651	3300005332	Tropical Forest Soil	MLTSNDYKELAARCTELASESSEPTVAEALRALASDYLTRAAKLHHQTAD*
Ga0066388_1044043592	3300005332	Tropical Forest Soil	MLTSNDYKELAARCTELASEFPEPTVAEALMALASDYLARAAKLHH*
Ga0066388_1044425191	3300005332	Tropical Forest Soil	MLTSNDYKELAARCAELASESSEPTMAEALRALASDYLARAAKLRFE
Ga0066388_1044895061	3300005332	Tropical Forest Soil	MLSSNDYKELAAQCTELASELSEPTMAEALRVLASDYLARAAKLHHQTAD*
Ga0066388_1058712861	3300005332	Tropical Forest Soil	MLTSNDYKELAARCTELASESPEPTVAEALMALASDYLARAAKLHHQRAD*
Ga0008090_100474631	3300005363	Tropical Rainforest Soil	MLPQPWSQRAMLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLH
Ga0008090_158367223	3300005363	Tropical Rainforest Soil	MLTSNDYKELAARCAELASESSEPTVAEALRALASDYLARAAKL
Ga0070714_1004628721	3300005435	Agricultural Soil	MLTSNDYKELAARCTELASEFSEPAVAEALSALASDYLARAAKLHDQKAN*
Ga0070713_1005364032	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MLTWDDYRELAARCIELADESSEPSVAEALRALAADYLARGGKLYSEAAE*
Ga0066681_105827421	3300005451	Soil	MLIADDYRQLAARCIELAGESSEPSVAEALRALAADYLARGGKLYREAE*
Ga0066905_1001860802	3300005713	Tropical Forest Soil	MLTSNDYKELAVRCTELASESPEPTVAEALMALASDYLARAAKLHHQRAD*
Ga0066905_1003911662	3300005713	Tropical Forest Soil	MLTSNDYKDLAARCTELASESPEPTVAQALMALASDYLARAAKLHHQTAD*
Ga0066905_1023252031	3300005713	Tropical Forest Soil	MLTSEDYKQLAERCVELASECSAPTVAEALRALAVD
Ga0066903_1006995103	3300005764	Tropical Forest Soil	MLTSNDYKELAARCTELASESPEPTVAEALRALASDYLARAAKLHYQTAD*
Ga0066903_1013936351	3300005764	Tropical Forest Soil	MLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLGGL*
Ga0066903_1020048561	3300005764	Tropical Forest Soil	MLTLDDYEELATRCTELASESSEPTVAEALRALASDYLARAAKLHRQTAN*
Ga0066903_1023548752	3300005764	Tropical Forest Soil	MLTSNDYKELAARCSELATESSEPTVTEALRALASDYLVRAAQLRHQTTD*
Ga0066903_1038931481	3300005764	Tropical Forest Soil	MLTSNDYKELAARCTELASESSEPTVAEALRALAS
Ga0066903_1049593791	3300005764	Tropical Forest Soil	MLTSNDYKELAARCTELASESSEPTVVEALRALASDYL
Ga0066903_1069894441	3300005764	Tropical Forest Soil	MLTSNDYKELAARCAELASESAEPTVAEALRALASD
Ga0066903_1085003471	3300005764	Tropical Forest Soil	MLTSNDYKELAARCTELASESPEPTVAEALIALASDYLARAAKLHHQRAD*
Ga0066903_1085254191	3300005764	Tropical Forest Soil	MLTSNDYKELAAQCTELASESSEPTVAEALRALASDYLARAAKLHHQTAD*
Ga0081455_101214631	3300005937	Tabebuia Heterophylla Rhizosphere	LLTSDDYKELAARCIELASESSERTVAEALKALASDYLARAVKLRSRTAE*
Ga0081538_100122928	3300005981	Tabebuia Heterophylla Rhizosphere	MLTSDDYNQLADRCVELANECSEPAVVEALRALALDYLARAAKLHGQTADSRPQMQTT*
Ga0070717_114804092	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MLSAEDYRELSARCIELADESSEPSVAEALRALAADYLARGGKLYSEAAE*
Ga0075364_108206452	3300006051	Populus Endosphere	MLTSNDYKELAARCTELASESSEPTVAEALMALASDYLARAAKLHHQIAN*
Ga0075428_1009356612	3300006844	Populus Rhizosphere	MLTSNDYRELAARCTELASESSEPTVAEALMALASDYLARAAKLHHQTA*
Ga0075418_102147606	3300009100	Populus Rhizosphere	MTRQASAMLTSEDYKQLGERCAELASECSAPTVAEALRALAVDYLSRAA
Ga0075418_113122892	3300009100	Populus Rhizosphere	MLSSNDYRELAARCTELASESSEPTVAEALMALASDYLARPAKLHRQTA
Ga0075418_118081371	3300009100	Populus Rhizosphere	MLTSNDYRELAARCTELASESSEPTVAEALMALASDYLARPAKLHRQTA
Ga0066709_1019911652	3300009137	Grasslands Soil	MLTADDYSELAARCIELAGECSEPSVAEALSALAADYLARGGKLYREAAE*
Ga0126374_108016111	3300009792	Tropical Forest Soil	DYEELAARCTELASESSEPTVAEALRALASDYLARAAKLHFARHEHCRR*
Ga0126380_101416143	3300010043	Tropical Forest Soil	MLTSNDYKELAARCTELASEFSEPAVAEALRALASDYLAHAVKLHHQTAD*
Ga0126380_101663742	3300010043	Tropical Forest Soil	MLTSNDYKELAAQCSELASEALIALASDYLSRAGKLHHQTAD*
Ga0126380_108845141	3300010043	Tropical Forest Soil	SNDYKELAVRCTELASESPEPTVAEALMALASDYLARAAKLHHQRAD*
Ga0126384_117880692	3300010046	Tropical Forest Soil	MLTSNDYKELAAQCGELASEALIALASDYLSRAGKLHHQTAD*
Ga0126382_104917501	3300010047	Tropical Forest Soil	MLTSNDYKELEARCTELASESSEPTVAEALRALASDYLARAAKLHFVFLEPR
Ga0126382_120263812	3300010047	Tropical Forest Soil	MLTSNDYKELAIRCTELASESSEPTVAEALRALASDYLARAAKLH
Ga0126378_110966023	3300010361	Tropical Forest Soil	MLTSNDYNELAARCTELASEFSEPAVAEALRALASDYLALAAKLHHQTAE*
Ga0126379_120768561	3300010366	Tropical Forest Soil	MLTSNDYKELAARCAELASESSEPTMAEALRALASDYLARAAKL
Ga0126379_122321991	3300010366	Tropical Forest Soil	MLTSNDYKELAARCTELASEFSEPAVAEALRALASDYLAHAVKLH
Ga0126379_131528921	3300010366	Tropical Forest Soil	NDYKELAARCTELASEFSEPAVAEALRALASDYLAHAVKLHNQTAD*
Ga0132258_120701292	3300015371	Arabidopsis Rhizosphere	MLTSNDYKELAARCSELAGESSAPTVTEALRALASDYLVRAAQLRHQTKD*
Ga0132256_1010458781	3300015372	Arabidopsis Rhizosphere	QRAMLSSNDYRELAARCTELASESSELTVAEALRALASDYLARAAKLHRQTAD*
Ga0132257_1001338417	3300015373	Arabidopsis Rhizosphere	MLSSNDYRELAARCTELASESSEPTVAEALMALASDYLARAAKLHRQTAD*
Ga0182033_112970251	3300016319	Soil	DYKELAARCTELASESSEPTVAEALRALASDYLARAAKLHHQTAD
Ga0182035_111350171	3300016341	Soil	QRAMLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLHHQTAD
Ga0182032_108186931	3300016357	Soil	MLTSNDFTELAARCTGLASEASEPTVAEALRALASDYLARAAK
Ga0182040_112059451	3300016387	Soil	MLPQPRSQRIMLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAA
Ga0182039_100786294	3300016422	Soil	MLTSNDYKELAAQCAELASESSEPTVAEALRALASDYLARA
Ga0182039_109932831	3300016422	Soil	MLTLNDYKELAARCTELASESSEPTVAEALRALASDYLARA
Ga0182038_104746362	3300016445	Soil	MLTSNDYKELAARCTELASEFSEPAVAEALRALASDYLAHAVKLHHQTAD
Ga0190267_111621622	3300019767	Soil	MLISEDYKQLAERCLKLAGESSDPVVAAALRALATDY
Ga0210382_104251351	3300021080	Groundwater Sediment	MVQDEMLISEDYKQLAERCMRLARECSDPDGAEALRALALDYL
Ga0210400_115467911	3300021170	Soil	MLTSNDYKELAARCAELASEFSEPTVAEALRALASDYLARAAKLHF
Ga0126371_114287341	3300021560	Tropical Forest Soil	KELAARCTELASEFSEPAVAEALRALASDYLAHAVKLHNQTAD
Ga0126371_119613211	3300021560	Tropical Forest Soil	NDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLHHQTAD
Ga0126371_122614012	3300021560	Tropical Forest Soil	MLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLH
Ga0208990_11122901	3300027663	Forest Soil	MLVSEDYKQLAERCMKLVSECSDPTVAEALRALASDYLARA
Ga0209382_110483782	3300027909	Populus Rhizosphere	MLTSNDYRELAARCTELASESSEPTVAEALMALASDYLARAAKLHHQTA
Ga0307323_103296071	3300028787	Soil	MVQDEMLISEDYKQLAERCMRLASECSDPDGAEALRAL
Ga0307299_103111701	3300028793	Soil	MLTSNDYKELAARCTELASEFSEPAVAEALSALASDYLARAAKLHHQTAD
Ga0307296_101575502	3300028819	Soil	MLTSNDYKELAARCTELASEFSEPAVAEALSALASDYLALAAKLHHQTAD
Ga0318541_100097848	3300031545	Soil	MLTSNDYKELAARCTELASESSEPTVAEAPRALASDYLARAAKLHHQTAD
Ga0310915_105133311	3300031573	Soil	MLTSNDYKELAARCTELASESSEPTVAEALRALASDY
Ga0318561_106335532	3300031679	Soil	MLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAGKLHFVNQGTRLQ
Ga0318560_105327051	3300031682	Soil	TSNDYKELAARCTELASESSEPTVAEAPRALASDYLARAAKLHHQTAD
Ga0306917_110068591	3300031719	Soil	QRAMLTSNDYKELAARCTELASESSEPTVAEAPRALASDYLARAAKLHHQTAD
Ga0318500_103921491	3300031724	Soil	MLTSNDYKELAARCTELASESSEPTVAEALRALASDYL
Ga0306918_105967243	3300031744	Soil	MLPQPWSQRAMLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLHHQTA
Ga0318537_100737413	3300031763	Soil	MLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAGKL
Ga0318535_102711553	3300031764	Soil	MLTSNDYKELAARCTELASESCEPTVAEALRALASDYL
Ga0318546_105557661	3300031771	Soil	MLTSNDHKELAARCTELASESSEPTVAEALRALASDYLARAAKRHFVFLETKARG
Ga0318551_101683951	3300031896	Soil	MLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAGK
Ga0306923_103857502	3300031910	Soil	ELAARCTELASESSEPTVAEALRALASDYLARAAKLHFVFLE
Ga0306923_104106753	3300031910	Soil	MLPQPWSQRAMLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLHHQTAD
Ga0306923_109423973	3300031910	Soil	MLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAGKLHF
Ga0310912_114409911	3300031941	Soil	MLTSNDYKELAARCTELASESPEPTVAEALRALASDYL
Ga0310913_1001131014	3300031945	Soil	MLTSNDHKELAARCTELASESSEPTVAEALRALASDYLARAAKLHFVF
Ga0310913_101437492	3300031945	Soil	MLSSNDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLHFVFLE
Ga0310909_109069313	3300031947	Soil	MLTSNDYKELAARCTELAGESSEPTVAEALRALASDYPARAAK
Ga0306926_115938261	3300031954	Soil	MLTLNDYKELAARCTELASESSEPTVAEALRALASDYLARAA
Ga0318530_104680891	3300031959	Soil	MLTSNDYKELAARCTELAGESSEPTVAEALRALASDYLARAA
Ga0306922_122150371	3300032001	Soil	MLTSNDYTELAARCTELASESSEPTVAEALRALASDY
Ga0318549_100729741	3300032041	Soil	MLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAGKLH
Ga0318532_100575931	3300032051	Soil	MLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARDGKLHF
Ga0318505_103729842	3300032060	Soil	PWSLRAMLSSNDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLHFVFLE
Ga0306924_102337181	3300032076	Soil	MLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLHF
Ga0318518_104361351	3300032090	Soil	LTSNDYKELAARCTELASESSEPTVAEAPRALASDYLARAAKLHHQTAD
Ga0307471_1018634032	3300032180	Hardwood Forest Soil	MTWSQRAMLSSNDYRELAARCTELASESSEPTVAEALMALASDYLARAAKLHRQTAD
Ga0306920_1022457663	3300032261	Soil	MLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLHHQTAD
Ga0306920_1026737801	3300032261	Soil	MLTSNDHKELAARCTELASESSEPTVAEALRALASDYLARAAKLHFV
Ga0306920_1031962013	3300032261	Soil	MLTSNDYAELAARCTELASESSEPTVAEALRALASDYLAR
Ga0310914_104488841	3300033289	Soil	MLTLNDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLHF
Ga0247830_109801602	3300033551	Soil	MLTSNDYKELAAQCTELASEFSEPAVAEALSALASDYLARAANLHHQTAD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098244

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences