NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F098322

Metagenome / Metatranscriptome Family F098322

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F098322
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 41 residues
Representative Sequence MDFQQMGKQDNAGRFERGYLKVTTENLTNWTLPRCEKPPKTNE
Number of Associated Samples 16
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 19.23 %
% of genes near scaffold ends (potentially truncated) 35.58 %
% of genes from short scaffolds (< 2000 bps) 75.96 %
Associated GOLD sequencing projects 12
AlphaFold2 3D model prediction Yes
3D model pTM-score0.18

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (61.538 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen
(98.077 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal proximal gut
(99.038 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.18
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF10509GalKase_gal_bdg 2.88
PF16168AIDA 2.88
PF00398RrnaAD 1.92
PF00293NUDIX 1.92
PF17189Glyco_hydro_30C 1.92
PF04452Methyltrans_RNA 1.92
PF04191PEMT 1.92
PF03709OKR_DC_1_N 1.92
PF12697Abhydrolase_6 1.92
PF14520HHH_5 0.96
PF08238Sel1 0.96
PF00756Esterase 0.96
PF02511Thy1 0.96
PF00912Transgly 0.96
PF00501AMP-binding 0.96
PF00106adh_short 0.96
PF02390Methyltransf_4 0.96
PF01145Band_7 0.96
PF13847Methyltransf_31 0.96
PF01979Amidohydro_1 0.96
PF00696AA_kinase 0.96
PF00156Pribosyltran 0.96
PF03729DUF308 0.96
PF00970FAD_binding_6 0.96
PF13280WYL 0.96
PF13360PQQ_2 0.96
PF02350Epimerase_2 0.96
PF00133tRNA-synt_1 0.96
PF00150Cellulase 0.96
PF04616Glyco_hydro_43 0.96
PF07520SrfB 0.96
PF00248Aldo_ket_red 0.96
PF00664ABC_membrane 0.96
PF01496V_ATPase_I 0.96
PF01408GFO_IDH_MocA 0.96
PF01381HTH_3 0.96
PF01894UPF0047 0.96
PF03631Virul_fac_BrkB 0.96
PF02784Orn_Arg_deC_N 0.96
PF01479S4 0.96
PF02915Rubrerythrin 0.96
PF07494Reg_prop 0.96
PF02321OEP 0.96
PF01813ATP-synt_D 0.96
PF07804HipA_C 0.96
PF07883Cupin_2 0.96
PF01134GIDA 0.96
PF07690MFS_1 0.96
PF00815Histidinol_dh 0.96
PF00258Flavodoxin_1 0.96
PF01544CorA 0.96
PF12245Big_3_2 0.96
PF13638PIN_4 0.96
PF01527HTH_Tnp_1 0.96
PF01370Epimerase 0.96
PF03063Prismane 0.96
PF03466LysR_substrate 0.96
PF02482Ribosomal_S30AE 0.96
PF00924MS_channel 0.96
PF00702Hydrolase 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG003016S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)Translation, ribosomal structure and biogenesis [J] 2.88
COG138516S rRNA U1498 N3-methylase RsmETranslation, ribosomal structure and biogenesis [J] 1.92
COG1538Outer membrane protein TolCCell wall/membrane/envelope biogenesis [M] 1.92
COG0019Diaminopimelate decarboxylaseAmino acid transport and metabolism [E] 0.96
COG0060Isoleucyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.96
COG0141Histidinol dehydrogenaseAmino acid transport and metabolism [E] 0.96
COG0143Methionyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.96
COG0220tRNA G46 N7-methylase TrmBTranslation, ribosomal structure and biogenesis [J] 0.96
COG0381UDP-N-acetylglucosamine 2-epimeraseCell wall/membrane/envelope biogenesis [M] 0.96
COG0432Thiamin phosphate synthase YjbQ, UPF0047 familyCoenzyme transport and metabolism [H] 0.96
COG0495Leucyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.96
COG0525Valyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.96
COG0598Mg2+ and Co2+ transporter CorAInorganic ion transport and metabolism [P] 0.96
COG0668Small-conductance mechanosensitive channelCell wall/membrane/envelope biogenesis [M] 0.96
COG0707UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferaseCell wall/membrane/envelope biogenesis [M] 0.96
COG0744Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidaseCell wall/membrane/envelope biogenesis [M] 0.96
COG1151Hydroxylamine reductase (hybrid-cluster protein)Energy production and conversion [C] 0.96
COG1152CO dehydrogenase/acetyl-CoA synthase alpha subunitEnergy production and conversion [C] 0.96
COG1166Arginine decarboxylase (spermidine biosynthesis)Amino acid transport and metabolism [E] 0.96
COG1269Archaeal/vacuolar-type H+-ATPase subunit I/STV1Energy production and conversion [C] 0.96
COG1295Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)Function unknown [S] 0.96
COG1351Thymidylate synthase ThyX, FAD-dependent familyNucleotide transport and metabolism [F] 0.96
COG1394Archaeal/vacuolar-type H+-ATPase subunit D/Vma8Energy production and conversion [C] 0.96
COG1544Ribosome-associated translation inhibitor RaiATranslation, ribosomal structure and biogenesis [J] 0.96
COG2226Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenGCoenzyme transport and metabolism [H] 0.96
COG2730Aryl-phospho-beta-D-glucosidase BglC, GH1 familyCarbohydrate transport and metabolism [G] 0.96
COG3247Acid resistance membrane protein HdeD, DUF308 familyGeneral function prediction only [R] 0.96
COG3264Small-conductance mechanosensitive channel MscKCell wall/membrane/envelope biogenesis [M] 0.96
COG3292Periplasmic ligand-binding sensor domainSignal transduction mechanisms [T] 0.96
COG3550Serine/threonine protein kinase HipA, toxin component of the HipAB toxin-antitoxin moduleSignal transduction mechanisms [T] 0.96
COG3934Endo-1,4-beta-mannosidaseCarbohydrate transport and metabolism [G] 0.96
COG4122tRNA 5-hydroxyU34 O-methylase TrmR/YrrMTranslation, ribosomal structure and biogenesis [J] 0.96
COG4953Membrane carboxypeptidase/penicillin-binding protein PbpCCell wall/membrane/envelope biogenesis [M] 0.96
COG5009Membrane carboxypeptidase/penicillin-binding proteinCell wall/membrane/envelope biogenesis [M] 0.96


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms61.54 %
UnclassifiedrootN/A38.46 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2061766007|rumenHiSeq_NODE_3640421_len_4287_cov_1_830184All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → Phycisphaeraceae → unclassified Phycisphaeraceae → Phycisphaeraceae bacterium4337Open in IMG/M
3300003523|DRAFT_10476098All Organisms → cellular organisms → Bacteria701Open in IMG/M
3300024337|Ga0255060_10217680All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales930Open in IMG/M
3300024337|Ga0255060_10271535Not Available835Open in IMG/M
3300024345|Ga0255062_10588020Not Available542Open in IMG/M
3300028048|Ga0256405_10286719Not Available1006Open in IMG/M
3300028048|Ga0256405_10295667Not Available982Open in IMG/M
3300028797|Ga0265301_10000314All Organisms → cellular organisms → Bacteria74145Open in IMG/M
3300028797|Ga0265301_10001986All Organisms → cellular organisms → Bacteria24930Open in IMG/M
3300028797|Ga0265301_10002339All Organisms → cellular organisms → Bacteria22119Open in IMG/M
3300028797|Ga0265301_10003069All Organisms → cellular organisms → Bacteria18197Open in IMG/M
3300028797|Ga0265301_10010710All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Victivallales → Victivallaceae → Victivallis → Victivallis vadensis8152Open in IMG/M
3300028797|Ga0265301_10011355Not Available7867Open in IMG/M
3300028797|Ga0265301_10017882All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Victivallales → Victivallaceae → Victivallis → Victivallis vadensis5923Open in IMG/M
3300028797|Ga0265301_10018469All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Victivallales → Victivallaceae → Victivallis → Victivallis vadensis5806Open in IMG/M
3300028797|Ga0265301_10133037All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae1895Open in IMG/M
3300028797|Ga0265301_10315887All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium1172Open in IMG/M
3300028797|Ga0265301_10730438Not Available725Open in IMG/M
3300028805|Ga0247608_10131237Not Available2401Open in IMG/M
3300028805|Ga0247608_10273343All Organisms → cellular organisms → Bacteria1670Open in IMG/M
3300028805|Ga0247608_10291201Not Available1616Open in IMG/M
3300028805|Ga0247608_10664082All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Gallionellales bacterium RIFOXYB12_FULL_54_91008Open in IMG/M
3300028805|Ga0247608_10995960All Organisms → cellular organisms → Bacteria777Open in IMG/M
3300028805|Ga0247608_11052883All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae749Open in IMG/M
3300028805|Ga0247608_11186749Not Available690Open in IMG/M
3300028832|Ga0265298_10039938All Organisms → cellular organisms → Bacteria5014Open in IMG/M
3300028832|Ga0265298_10538018Not Available1059Open in IMG/M
3300028832|Ga0265298_10570535All Organisms → cellular organisms → Bacteria1022Open in IMG/M
3300028832|Ga0265298_11026019All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales713Open in IMG/M
3300028832|Ga0265298_11420396All Organisms → cellular organisms → Bacteria582Open in IMG/M
3300028832|Ga0265298_11715352Not Available514Open in IMG/M
3300028887|Ga0265299_10185156All Organisms → cellular organisms → Bacteria1754Open in IMG/M
3300028887|Ga0265299_10212721All Organisms → cellular organisms → Bacteria1631Open in IMG/M
3300028887|Ga0265299_10269440Not Available1438Open in IMG/M
3300028887|Ga0265299_10304856All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin1741347Open in IMG/M
3300028887|Ga0265299_10313937All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1326Open in IMG/M
3300028887|Ga0265299_10742588All Organisms → cellular organisms → Bacteria827Open in IMG/M
3300028887|Ga0265299_11029681All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria685Open in IMG/M
3300028887|Ga0265299_11476199All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerota bacterium553Open in IMG/M
3300028914|Ga0265300_10089811All Organisms → cellular organisms → Bacteria2075Open in IMG/M
3300028914|Ga0265300_10199094All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Victivallales → Victivallaceae → Victivallis → Victivallis vadensis1368Open in IMG/M
3300028914|Ga0265300_10290284All Organisms → cellular organisms → Bacteria1117Open in IMG/M
3300028914|Ga0265300_10486579All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes844Open in IMG/M
3300028914|Ga0265300_10756646Not Available657Open in IMG/M
3300028914|Ga0265300_10879626All Organisms → cellular organisms → Bacteria602Open in IMG/M
3300028914|Ga0265300_10976447All Organisms → cellular organisms → Bacteria566Open in IMG/M
3300028914|Ga0265300_11027830Not Available549Open in IMG/M
3300028914|Ga0265300_11138833Not Available516Open in IMG/M
3300031993|Ga0310696_10037330All Organisms → cellular organisms → Bacteria5405Open in IMG/M
3300031993|Ga0310696_10160728All Organisms → cellular organisms → Bacteria2463Open in IMG/M
3300031993|Ga0310696_10170779All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Victivallales → Victivallaceae → Victivallis → Victivallis vadensis2383Open in IMG/M
3300031993|Ga0310696_10316250All Organisms → cellular organisms → Bacteria1697Open in IMG/M
3300031993|Ga0310696_10423053All Organisms → cellular organisms → Bacteria1442Open in IMG/M
3300031993|Ga0310696_10627274All Organisms → cellular organisms → Bacteria1152Open in IMG/M
3300031993|Ga0310696_10919941Not Available921Open in IMG/M
3300031993|Ga0310696_10952589Not Available902Open in IMG/M
3300031993|Ga0310696_10960554All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae898Open in IMG/M
3300031993|Ga0310696_11023690Not Available864Open in IMG/M
3300031993|Ga0310696_11084305Not Available834Open in IMG/M
3300031993|Ga0310696_11112420All Organisms → cellular organisms → Bacteria821Open in IMG/M
3300031993|Ga0310696_11194301All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Eubacteriales Family XIII. Incertae Sedis786Open in IMG/M
3300031993|Ga0310696_11258248Not Available761Open in IMG/M
3300031993|Ga0310696_11545541Not Available670Open in IMG/M
3300031993|Ga0310696_11673237All Organisms → cellular organisms → Bacteria637Open in IMG/M
3300031993|Ga0310696_11986687All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae571Open in IMG/M
3300031993|Ga0310696_12113414Not Available548Open in IMG/M
3300031994|Ga0310691_10397974All Organisms → cellular organisms → Bacteria1522Open in IMG/M
3300031994|Ga0310691_10851387Not Available977Open in IMG/M
3300031998|Ga0310786_10096520All Organisms → cellular organisms → Bacteria → PVC group3416Open in IMG/M
3300031998|Ga0310786_10104865All Organisms → cellular organisms → Bacteria3267Open in IMG/M
3300031998|Ga0310786_10114780All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → unclassified Lentisphaeria → Lentisphaeria bacterium3111Open in IMG/M
3300031998|Ga0310786_10671749All Organisms → cellular organisms → Bacteria1158Open in IMG/M
3300031998|Ga0310786_10775407Not Available1064Open in IMG/M
3300031998|Ga0310786_10816019All Organisms → cellular organisms → Bacteria1032Open in IMG/M
3300031998|Ga0310786_10900376All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales973Open in IMG/M
3300031998|Ga0310786_10963185Not Available934Open in IMG/M
3300031998|Ga0310786_11210028Not Available812Open in IMG/M
3300031998|Ga0310786_11397101Not Available742Open in IMG/M
3300031998|Ga0310786_11416013Not Available736Open in IMG/M
3300031998|Ga0310786_11452511Not Available724Open in IMG/M
3300031998|Ga0310786_11593801All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae683Open in IMG/M
3300031998|Ga0310786_11629628Not Available673Open in IMG/M
3300031998|Ga0310786_11661641All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Muribaculaceae → Sodaliphilus → Sodaliphilus pleomorphus665Open in IMG/M
3300031998|Ga0310786_11937107Not Available603Open in IMG/M
3300031998|Ga0310786_12095493Not Available572Open in IMG/M
3300031998|Ga0310786_12328842Not Available533Open in IMG/M
3300032030|Ga0310697_10432188All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerota bacterium1368Open in IMG/M
3300033463|Ga0310690_10010491All Organisms → cellular organisms → Bacteria11523Open in IMG/M
3300033463|Ga0310690_10016725Not Available8772Open in IMG/M
3300033463|Ga0310690_10021927All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → Victivallales7553Open in IMG/M
3300033463|Ga0310690_10045832All Organisms → cellular organisms → Bacteria5060Open in IMG/M
3300033463|Ga0310690_10059738All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae4391Open in IMG/M
3300033463|Ga0310690_10112017All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → Lentisphaeria → unclassified Lentisphaeria → Lentisphaeria bacterium3132Open in IMG/M
3300033463|Ga0310690_10186219All Organisms → cellular organisms → Bacteria2372Open in IMG/M
3300033463|Ga0310690_10306866All Organisms → cellular organisms → Bacteria1805Open in IMG/M
3300033463|Ga0310690_10362878All Organisms → cellular organisms → Bacteria1646Open in IMG/M
3300033463|Ga0310690_10468382Not Available1429Open in IMG/M
3300033463|Ga0310690_10551522Not Available1304Open in IMG/M
3300033463|Ga0310690_10818196Not Available1044Open in IMG/M
3300033463|Ga0310690_11039029All Organisms → cellular organisms → Bacteria910Open in IMG/M
3300033463|Ga0310690_11609963Not Available701Open in IMG/M
3300033463|Ga0310690_12455802Not Available541Open in IMG/M
3300033463|Ga0310690_12592110All Organisms → cellular organisms → Bacteria523Open in IMG/M
3300034645|Ga0371491_163373Not Available569Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
RumenHost-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen98.08%
Bovine RumenHost-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen0.96%
Camel RumenHost-Associated → Mammals → Digestive System → Foregut → Rumen → Camel Rumen0.96%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2061766007Bovine rumen microbial communities fromthe University of Illinois at Urbana-Champaign, USA, that are switchgrass associated - Sample 470Host-AssociatedOpen in IMG/M
3300003523Camel rumen microbial communities from Jandagh-Isfahan, Iran - Sample 1Host-AssociatedOpen in IMG/M
3300024337Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 RNA GHGlow gp2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300024345Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 RNA GHGhigh gp2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300028048Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_02Host-AssociatedOpen in IMG/M
3300028797Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04Host-AssociatedOpen in IMG/M
3300028805Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 DNA GHGlow gp2Host-AssociatedOpen in IMG/M
3300028832Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_01Host-AssociatedOpen in IMG/M
3300028887Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_02Host-AssociatedOpen in IMG/M
3300028914Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_03Host-AssociatedOpen in IMG/M
3300031993Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_02 (v2)Host-AssociatedOpen in IMG/M
3300031994Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 DNA GHGlow gp2 (v2)Host-AssociatedOpen in IMG/M
3300031998Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_03 (v2)Host-AssociatedOpen in IMG/M
3300032030Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2 (v2)Host-AssociatedOpen in IMG/M
3300033463Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04 (v2)Host-AssociatedOpen in IMG/M
3300034645Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 RNA GHGlow gp2 (Metagenome Metatranscriptome) (NovaSeq)Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
_HiSeq_257853202061766007Bovine RumenMDFLRMGKKTNAGRFERGYLKVTTENLTSWTLSRREKPPNTNF
DRAFT_1047609823300003523Camel RumenMDFQRMDKKASAGRFERGYLKVTTENLTSWALSEREKPPKTNF*
Ga0255060_1021768013300024337RumenMGKKTNAGRFERGYPKVTTENLPSWTLSGREKPPNTNFQ
Ga0255060_1027153513300024337RumenMDFQRMDKIANAERFERGGLKATTENLASWTLGGREKPTKTII
Ga0255062_1058802023300024345RumenMDFQRMDKIANAERFERGGLKATTENLASWTLGGREKPTK
Ga0256405_1028671913300028048RumenMDFQRMDKKANAGRFERGYLKVTTENLTSWTLSRREKPPKTNF
Ga0256405_1029566733300028048RumenMDFQQTGKQDDAGRFERGCLKLTTGNLPNRDLPGCEKPSNPKK
Ga0265301_1000031463300028797RumenMGKQDNAGRFERGYLKVTTENLTNWYLPRCEKPPEIN
Ga0265301_10001986123300028797RumenMDFQRMGKQDNAGRFEGGYPKVTTENLASWTLPRREKPPKTNF
Ga0265301_10002339133300028797RumenMGKKANAGRFERGYLKVTTENLTNWNLPRCEKPLKTK
Ga0265301_1000306953300028797RumenMDFQQMGKQDNAGRFERGYLKVTTENLPNWNLPGCEKPPEINE
Ga0265301_1001071033300028797RumenMDFQQMGKQDNAGRFECGYLKVTTENLTNWNLPGCEKPPEISE
Ga0265301_1001135533300028797RumenMGKQDKAERLERGYLKATTENLANWNLPGCEKTPGPNE
Ga0265301_1001788273300028797RumenMDFQHMGQKANAGRFELGYLKVTTENLTIWTLLKREKPPKTNF
Ga0265301_1001846953300028797RumenMDFQQMGKQDNAGRFECGYLKVTTENLTNWNLPKCEKPPKTN
Ga0265301_1013303733300028797RumenMDFQQTGKQDNAGRFERGYLKVTTENLTNWDLPGCEKPPKTNK
Ga0265301_1031588723300028797RumenMDFQQMGKQDNAGRFERGYLKVTTENLTNWTLPKCEKPPKTNE
Ga0265301_1073043813300028797RumenMGQKANAGRFELGYLKVTTENLTIWTLLKREKPPKTNF
Ga0247608_1013123743300028805RumenMDFQQTGKQDDAGRFERGCLKLSTGNLPNRDLPGCEKPSNPKK
Ga0247608_1027334313300028805RumenYLLKFGRMDFQRMGKKTNAGRFERGYLMVTTENLTSWTLPGREKPPKTNFQRCPDAV
Ga0247608_1029120133300028805RumenMDFQRMGKKTNAGRFERGCLKVTTEKLTSWTLPGREKPPKTNF
Ga0247608_1066408233300028805RumenKDNAERSERGYLKVTTENLASWTLSGREKPPNTYF
Ga0247608_1099596013300028805RumenDFQRMGKKTNAGRFERGCLKVTTDNFASWTLSGREKPPKTNFQR
Ga0247608_1105288313300028805RumenKFDRIDFQRMGKKDNAERFERGYLKVTTENLTSWTLSRREKPPKTNF
Ga0247608_1118674923300028805RumenDPKDNAGRFERGYLKVTTENLTSWTLSRREKPPKTNY
Ga0265298_1003993863300028832RumenMGKQDNAGRFERGYLKVTTENLTNWNLPEREKPPNTNF
Ga0265298_1053801823300028832RumenMGFQQTGKQDNAGRFERGYLKVTTENLTSWDLPGCEKPPKTNK
Ga0265298_1057053523300028832RumenMDFQRMDQKANAGRFERGYLKVTTENLANWNWSGREKPPKTNF
Ga0265298_1102601913300028832RumenMDFQQMGKQDNAGRFERGYLKVTTENLTNWTLPRCEKPPKTNE
Ga0265298_1142039613300028832RumenMDFQRMGKEANAGRFERGYLKVTTENLTNWTLLKREKPPKTIF
Ga0265298_1171535223300028832RumenMVFQRMGKQDNAGRFERGYLKVTTDNLTNWNLPEREKPPNTNC
Ga0265299_1018515613300028887RumenRGKRDNAGRFERGYLKVTTENLTSWDLPGREKPPKSFF
Ga0265299_1021272123300028887RumenMDFQQMGKQDNAGRFERGYPKVTTENLTSWNLPRCEKPPEIN
Ga0265299_1026944023300028887RumenMDFQQTGKLDNAGRFERGYLKVTTENLTSWDLPGCEKPPKTNK
Ga0265299_1030485633300028887RumenMVFQQTGKQDNAGRFERGYLKVTIENLTNRDLPGCEKPPETNE
Ga0265299_1031393723300028887RumenMVFQQTGKQDNAGRFERGYLKVTIENLTNWDLPGCEKPPKTNE
Ga0265299_1074258823300028887RumenMDFQQTGKQDNAGRFERGYLKVTTENLTNWNLPGCEKPPKTNE
Ga0265299_1102968113300028887RumenMVFQQMGKQDNSGRFECGCLKAATENLADWDLPMCEKPPEIY
Ga0265299_1147619923300028887RumenSKKANAGRFERGYLKVTTENLPSWTLLRREKPPKTNF
Ga0265300_1008981143300028914RumenMGKQDNAGRFECGYLKVTTENLTNWNLPEREKPPNTNF
Ga0265300_1019909423300028914RumenMDFQQTGKQDNAGRFERGCLKVTTENLTNWDLSGCEKPPKTNE
Ga0265300_1029028423300028914RumenMDFQQMGKQANAGRFERGYLKVTTEKLTNWDLPGCEKPPKTNE
Ga0265300_1048657923300028914RumenMDFQQTGKQDNAGRFERGYLKVTTENLTSWDLPGCEKPPKTN
Ga0265300_1075664613300028914RumenMDFQQTGKLDNAGRFERGHLKVTTENLTNWDLPGCEKPPKTNQ
Ga0265300_1087962613300028914RumenMDFQQMGKQDNAGRFERGYLKVTTENLTNWNLPGCEKPPETNE
Ga0265300_1097644723300028914RumenMDFQRMGKEANAGRFERGYLKVTTEKLTNWTLLKREKPPKTNF
Ga0265300_1102783023300028914RumenMDFQRMGKQDNAGRFEGGYPKVTTENLASWTLPRR
Ga0265300_1113883313300028914RumenMDFQWMSQKANAGRFERGYLKVTTDNLTNWTLLEHEKPPKTNF
Ga0310696_1003733023300031993RumenMDFQQMGKQANAGSFERGCLKVTTENLTNWTLLRCEKPPKTNE
Ga0310696_1016072823300031993RumenMDFQRMGKEANAGRFERGYLKVTTENLTNWTLLKREKPPKTNF
Ga0310696_1017077923300031993RumenMVFQQTGKQDNAGRFERGYLKVTTENLTSWDLPGCEKPPKTNE
Ga0310696_1031625023300031993RumenMDFQRMDQKANAGRFEDGYLKVTTENLAIWNWSKREKPPKTIF
Ga0310696_1042305313300031993RumenMDFQRMNPKTNAGRFEGGYLKETTENLANWNWSRREKLPKTNF
Ga0310696_1062727423300031993RumenMDFQRMDKKANAGRFERGYLKVTTENLTSWTLFRREKPPKTNF
Ga0310696_1091994123300031993RumenMDFQRMGKQDNAGRFEGGYLKVTTENLTNWDLSGREKPPKTNF
Ga0310696_1095258923300031993RumenMDFQQMGKQDNAGRFERGYLKVTTENLANWNLPRCEKPSQTNE
Ga0310696_1096055423300031993RumenMDFQRMGKEANAGRFERGYLKVTTENLANWTLLRREKPPKTIF
Ga0310696_1102369023300031993RumenMVFQQMGKQDNAGRFERGYLKVTTENLTNWDLPGCEKPPKTNE
Ga0310696_1108430523300031993RumenMDFQRMGKEANAGKFERGYLKVTAEKLTNWTLLRREKPPKTNF
Ga0310696_1111242023300031993RumenMDFQQMGKQDNAGRFERGYLKVTTENLTNWDLPGYEKPPKTNQ
Ga0310696_1119430123300031993RumenMDFQRMGKQDNAGRFERGYLKVTTENLTNWNLPEREKPPNTNF
Ga0310696_1125824813300031993RumenMDQKTNAGRFERGCLKVTTENLANWNWSGREKPPKTNC
Ga0310696_1154554113300031993RumenMDFQQMSKKANAGRFERGYLKVTADNLTNWTLLRCE
Ga0310696_1167323723300031993RumenMDFQQMGKQDNAGRFERGYLKVTTDNLTNWDLPRCEKPLKTN
Ga0310696_1198668723300031993RumenDFQQMGKQDNAGRFECGYLKVTTENLANWTLPRCEKPPEIN
Ga0310696_1211341413300031993RumenMDFQQMGKQDNAGRFERGYLKVTTENLTNWNLPRCE
Ga0310691_1039797433300031994RumenMDFQRMGKKANAGRFERGYLKVTTENLTSWTLSRREKPPKTN
Ga0310691_1085138713300031994RumenRMDFQRMGKKTNAGRFERGYLKVTTENLTSWTLSGREKPPNTNF
Ga0310786_1009652023300031998RumenMDFQQMGKQDNAGRFERGCLKVTTENLANWNLPGCEKPPKTNE
Ga0310786_1010486533300031998RumenMDFQRMGKQDNAGRFERGYLKVTTENLTNWNLPEREKPPNTNY
Ga0310786_1011478023300031998RumenMGKEANAGRFERGYLKVTTENLTNWTLLKREKPPKTNF
Ga0310786_1067174923300031998RumenMDFQQMGKQDNAGRFERGYLKVTTENLTKWNLPGCEKPPETNE
Ga0310786_1077540713300031998RumenTGKLDNAGRFERGYLKVTTENLTSWDLPGCEKPPKTNK
Ga0310786_1081601913300031998RumenMDFQQAGKLDNAGRFERGYLKVTTENLTNWNLPGCEKPPETNE
Ga0310786_1090037623300031998RumenMDFQQMGKQDNAGRFERGYLKVTTDNLTNWTLPRCEKPLKTNE
Ga0310786_1096318523300031998RumenDRMVFQRMGKQDNAGRFERGYLKVTTENLTSWNLSGREKPPKTNC
Ga0310786_1121002823300031998RumenMGKKANAGRFERGYLKATTENLSSWILPRREKPPETNEWRGPE
Ga0310786_1139710123300031998RumenMDFQQMGKQDNAGRFEGGYLKVTTENLTNWTLPRCE
Ga0310786_1141601313300031998RumenKANAGRFERGYLKVTTENLANWNWSGREKPPKTNF
Ga0310786_1145251123300031998RumenGISIRSIGWGFQQMGKQDNAGRFERGYLKVTTENLTNWTLPRCEKPPKTNE
Ga0310786_1159380113300031998RumenQMDKQDNAERFESGYLKITTENLTNWNLPMREMPPEIN
Ga0310786_1162962823300031998RumenEGMDFQQMGKQDNAGRFECGSLKAATENLTNRTLPGCEKPPKTS
Ga0310786_1166164123300031998RumenMDFQQTGKLDNAGRFERGYLKVTTENLTNWDLPGCEKPPKTNK
Ga0310786_1193710713300031998RumenMDFQRMSKKANAGRFERGYLNVTTENLPSWTLLRREKPPKTNYF
Ga0310786_1209549313300031998RumenMDFQQTGKQDNAGRFERGYLKVTTENLTSWDLPGCEKPPKTNQ
Ga0310786_1232884223300031998RumenPASVSQKGISINSMRMDFQHMGKQDNAGRFECGYLKVTTENLTNWILSRCEKPPKTN
Ga0310697_1043218813300032030RumenAGRIERGCLKVTTEKLTSWTLSGREKPPETIFRGAL
Ga0310690_1001049173300033463RumenMDFQQMGKQDNAGRFECGYLKVTTENLTNWNLPGCEKPPEINE
Ga0310690_1001672513300033463RumenRMSKKANAGRFERGYLNVTTENLPSWTLLRREKPPKTNF
Ga0310690_1002192723300033463RumenMGKQDNAERFERGYPKVTTENLTNWTLLRREKPPKTIF
Ga0310690_1004583223300033463RumenMDFQQMGKQANAGRFERGYLKVTTEKLTNWDLPGCEKPPKTNQ
Ga0310690_1005973833300033463RumenMGKEANAGKVERGYLKVTTEKLTNWTLLRREKPPKTNF
Ga0310690_1011201723300033463RumenISKFDRMDFQRMGKEANAGRFERGYLKVTTENLTNWTLLKREKPPKTNF
Ga0310690_1018621913300033463RumenMDFQRMGKQDNAGRFECGYQKVTTENLTNGNLPEREKPPNTNFQRCPL
Ga0310690_1030686623300033463RumenMDFQRMGKQDNAGRFEGGYPKVTTENLASWTLPRREKPPKTIF
Ga0310690_1036287833300033463RumenMDFQQMGKQDNAGRFERGYLKVTTENLTNWNLPRCEKPPEVN
Ga0310690_1046838213300033463RumenQQMGKQDNAGRFERGYLKVTTENLTNWTLPRCEKPPKTNE
Ga0310690_1055152213300033463RumenSFERMDFQQMGKQDNAGRFEGGYLKVTTEKLTNWNLPRCEKPSQTN
Ga0310690_1081819613300033463RumenMDQKTNAGRFERGYLKVTTENLANWTWSGREKPPK
Ga0310690_1103902923300033463RumenMDFQQMGKQDNAGRFERGYQKVTTENLTNWNLPGCEKPPKTNE
Ga0310690_1160996313300033463RumenKFDRMDFQRMGKEANAGRFERGCLKVTTEKLTNWTLLRREKPPKTNY
Ga0310690_1245580213300033463RumenMDQKANAGRFERGYLKVTTENLANWNWSGREKPPKTNF
Ga0310690_1259211023300033463RumenMDFQQMVKQDNAGRFERGYLKVTTENLTKWNLPGCEKPPETNE
Ga0371491_163373_461_5683300034645RumenMGKKTNAGRFERGYLKVTTENLASWTLSRREKPPNT


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