NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F098362

Metagenome Family F098362

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F098362
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 40 residues
Representative Sequence YSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Number of Associated Samples 52
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 14.56 %
% of genes near scaffold ends (potentially truncated) 91.26 %
% of genes from short scaffolds (< 2000 bps) 39.81 %
Associated GOLD sequencing projects 49
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (77.670 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog
(66.990 % of family members)
Environment Ontology (ENVO) Unclassified
(84.466 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(57.282 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 39.47%    β-sheet: 0.00%    Coil/Unstructured: 60.53%
Feature Viewer
Powered by Feature Viewer


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF00092VWA 2.91
PF01924HypD 2.91
PF16576HlyD_D23 2.91
PF02368Big_2 2.91
PF01578Cytochrom_C_asm 2.91
PF02896PEP-utilizers_C 2.91
PF14532Sigma54_activ_2 2.91
PF00550PP-binding 1.94
PF00072Response_reg 1.94
PF00793DAHP_synth_1 1.94
PF14559TPR_19 1.94
PF01694Rhomboid 1.94
PF13629T2SS-T3SS_pil_N 1.94
PF03989DNA_gyraseA_C 1.94
PF13505OMP_b-brl 1.94
PF00015MCPsignal 1.94
PF10576EndIII_4Fe-2S 1.94
PF01380SIS 1.94
PF01814Hemerythrin 1.94
PF14520HHH_5 0.97
PF00825Ribonuclease_P 0.97
PF01557FAA_hydrolase 0.97
PF02729OTCace_N 0.97
PF00364Biotin_lipoyl 0.97
PF13561adh_short_C2 0.97
PF13432TPR_16 0.97
PF12158DUF3592 0.97
PF13439Glyco_transf_4 0.97
PF00535Glycos_transf_2 0.97
PF00011HSP20 0.97
PF13701DDE_Tnp_1_4 0.97
PF02698DUF218 0.97
PF02628COX15-CtaA 0.97
PF13292DXP_synthase_N 0.97
PF08308PEGA 0.97
PF12779WXXGXW 0.97
PF00005ABC_tran 0.97
PF03486HI0933_like 0.97
PF03471CorC_HlyC 0.97
PF01850PIN 0.97
PF01926MMR_HSR1 0.97
PF00345PapD_N 0.97
PF11987IF-2 0.97
PF00248Aldo_ket_red 0.97
PF13614AAA_31 0.97
PF13692Glyco_trans_1_4 0.97
PF16976RcpC 0.97
PF04079SMC_ScpB 0.97
PF02452PemK_toxin 0.97
PF13899Thioredoxin_7 0.97
PF00574CLP_protease 0.97
PF12801Fer4_5 0.97
PF00146NADHdh 0.97
PF01553Acyltransferase 0.97
PF00069Pkinase 0.97
PF02436PYC_OADA 0.97
PF03946Ribosomal_L11_N 0.97
PF01391Collagen 0.97
PF01039Carboxyl_trans 0.97
PF07963N_methyl 0.97
PF02769AIRS_C 0.97
PF13537GATase_7 0.97
PF00710Asparaginase 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG0515Serine/threonine protein kinaseSignal transduction mechanisms [T] 3.88
COG0840Methyl-accepting chemotaxis protein (MCP)Signal transduction mechanisms [T] 3.88
COG0409Hydrogenase maturation factor HypDPosttranslational modification, protein turnover, chaperones [O] 2.91
COG0188DNA gyrase/topoisomerase IV, subunit AReplication, recombination and repair [L] 1.94
COG0252L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit DTranslation, ribosomal structure and biogenesis [J] 1.94
COG0493NADPH-dependent glutamate synthase beta chain or related oxidoreductaseAmino acid transport and metabolism [E] 1.94
COG0616Periplasmic serine protease, ClpP classPosttranslational modification, protein turnover, chaperones [O] 1.94
COG06542-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductasesEnergy production and conversion [C] 1.94
COG0705Membrane-associated serine protease, rhomboid familyPosttranslational modification, protein turnover, chaperones [O] 1.94
COG0740ATP-dependent protease ClpP, protease subunitPosttranslational modification, protein turnover, chaperones [O] 1.94
COG3121P pilus assembly protein, chaperone PapDExtracellular structures [W] 1.94
COG0029Aspartate oxidaseCoenzyme transport and metabolism [H] 0.97
COG0071Small heat shock protein IbpA, HSP20 familyPosttranslational modification, protein turnover, chaperones [O] 0.97
COG0080Ribosomal protein L11Translation, ribosomal structure and biogenesis [J] 0.97
COG0446NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductaseLipid transport and metabolism [I] 0.97
COG0492Thioredoxin reductasePosttranslational modification, protein turnover, chaperones [O] 0.97
COG0594RNase P protein componentTranslation, ribosomal structure and biogenesis [J] 0.97
COG0644Dehydrogenase (flavoprotein)Energy production and conversion [C] 0.97
COG0650Formate hydrogenlyase subunit HyfCEnergy production and conversion [C] 0.97
COG0777Acetyl-CoA carboxylase beta subunitLipid transport and metabolism [I] 0.97
COG0825Acetyl-CoA carboxylase alpha subunitLipid transport and metabolism [I] 0.97
COG1005NADH:ubiquinone oxidoreductase subunit 1 (chain H)Energy production and conversion [C] 0.97
COG1030Membrane-bound serine protease NfeD, ClpP classPosttranslational modification, protein turnover, chaperones [O] 0.97
COG1053Succinate dehydrogenase/fumarate reductase, flavoprotein subunitEnergy production and conversion [C] 0.97
COG1249Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductaseEnergy production and conversion [C] 0.97
COG1386Chromosome segregation and condensation protein ScpBTranscription [K] 0.97
COG1434Lipid carrier protein ElyC involved in cell wall biogenesis, DUF218 familyCell wall/membrane/envelope biogenesis [M] 0.97
COG1612Heme A synthaseCoenzyme transport and metabolism [H] 0.97
COG2072Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcDInorganic ion transport and metabolism [P] 0.97
COG2081Predicted flavoprotein YhiNGeneral function prediction only [R] 0.97
COG2337mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin moduleDefense mechanisms [V] 0.97
COG2509FAD-dependent dehydrogenaseGeneral function prediction only [R] 0.97
COG2949Uncharacterized periplasmic protein SanA, affects membrane permeability for vancomycinCell wall/membrane/envelope biogenesis [M] 0.97
COG3634Alkyl hydroperoxide reductase subunit AhpFDefense mechanisms [V] 0.97
COG4799Acetyl-CoA carboxylase, carboxyltransferase componentLipid transport and metabolism [I] 0.97


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms79.61 %
UnclassifiedrootN/A20.39 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300014199|Ga0181535_10085471All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales2058Open in IMG/M
3300014199|Ga0181535_10154004Not Available1438Open in IMG/M
3300014199|Ga0181535_10310455Not Available939Open in IMG/M
3300014199|Ga0181535_10354207Not Available866Open in IMG/M
3300014199|Ga0181535_10468973All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius731Open in IMG/M
3300014199|Ga0181535_10885018Not Available503Open in IMG/M
3300014492|Ga0182013_10054581All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → Acidithiobacillus ferridurans3000Open in IMG/M
3300014492|Ga0182013_10120894Not Available1715Open in IMG/M
3300014492|Ga0182013_10369466All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii779Open in IMG/M
3300014492|Ga0182013_10404037Not Available732Open in IMG/M
3300014492|Ga0182013_10464436All Organisms → cellular organisms → Bacteria666Open in IMG/M
3300014492|Ga0182013_10602498Not Available560Open in IMG/M
3300014492|Ga0182013_10642536All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius537Open in IMG/M
3300014493|Ga0182016_10004158All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae16142Open in IMG/M
3300014493|Ga0182016_10016959All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae6681Open in IMG/M
3300014493|Ga0182016_10029901All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4612Open in IMG/M
3300014499|Ga0182012_10639355Not Available682Open in IMG/M
3300014838|Ga0182030_10080437All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 894713Open in IMG/M
3300014838|Ga0182030_10218427All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha2240Open in IMG/M
3300014838|Ga0182030_10616260All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii1042Open in IMG/M
3300014838|Ga0182030_11206577All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces regalis646Open in IMG/M
3300014839|Ga0182027_10758178Not Available1021Open in IMG/M
3300014839|Ga0182027_12217700All Organisms → cellular organisms → Bacteria521Open in IMG/M
3300019787|Ga0182031_1343856All Organisms → cellular organisms → Bacteria1829Open in IMG/M
3300022824|Ga0224518_1000173All Organisms → cellular organisms → Bacteria8719Open in IMG/M
3300022824|Ga0224518_1003229All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces regalis1079Open in IMG/M
3300022872|Ga0224526_1000035All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae72560Open in IMG/M
(restricted) 3300023060|Ga0224519_1002091Not Available1846Open in IMG/M
3300026502|Ga0255350_1003800All Organisms → cellular organisms → Bacteria4994Open in IMG/M
3300028090|Ga0255349_1001417All Organisms → cellular organisms → Bacteria → Proteobacteria9187Open in IMG/M
3300028552|Ga0302149_1004344All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3959Open in IMG/M
3300028560|Ga0302144_10002602All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae6181Open in IMG/M
3300028562|Ga0302151_10035862All Organisms → cellular organisms → Bacteria → Proteobacteria1807Open in IMG/M
3300028562|Ga0302151_10086806Not Available1103Open in IMG/M
3300028565|Ga0302145_10037971Not Available1717Open in IMG/M
3300028565|Ga0302145_10074638All Organisms → cellular organisms → Bacteria → Acidobacteria1168Open in IMG/M
3300028566|Ga0302147_10000602All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae17005Open in IMG/M
3300028566|Ga0302147_10001290All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae11317Open in IMG/M
3300028566|Ga0302147_10038337All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1712Open in IMG/M
3300028572|Ga0302152_10009885All Organisms → cellular organisms → Bacteria3182Open in IMG/M
3300028572|Ga0302152_10328309Not Available505Open in IMG/M
3300028574|Ga0302153_10010600All Organisms → cellular organisms → Bacteria3158Open in IMG/M
3300028574|Ga0302153_10018192All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha2349Open in IMG/M
3300028745|Ga0302267_10025999All Organisms → cellular organisms → Bacteria3974Open in IMG/M
3300028748|Ga0302156_10121050All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1302Open in IMG/M
3300028762|Ga0302202_10433132All Organisms → cellular organisms → Bacteria → Acidobacteria604Open in IMG/M
3300028765|Ga0302198_10000069All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae95745Open in IMG/M
3300028766|Ga0302269_1017144All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2489Open in IMG/M
3300028859|Ga0302265_1011334Not Available3675Open in IMG/M
3300028860|Ga0302199_1000636All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae18234Open in IMG/M
3300028860|Ga0302199_1007649All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00684595Open in IMG/M
3300028860|Ga0302199_1087625Not Available1020Open in IMG/M
3300028866|Ga0302278_10000063All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae125407Open in IMG/M
3300028866|Ga0302278_10000124All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae95917Open in IMG/M
3300028866|Ga0302278_10012881All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria6850Open in IMG/M
3300028867|Ga0302146_10022490All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2891Open in IMG/M
3300028867|Ga0302146_10032230All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2333Open in IMG/M
3300028867|Ga0302146_10075079All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00681418Open in IMG/M
3300028873|Ga0302197_10008230All Organisms → cellular organisms → Bacteria → Proteobacteria8342Open in IMG/M
3300028874|Ga0302155_10029098All Organisms → cellular organisms → Bacteria2644Open in IMG/M
3300028882|Ga0302154_10003395All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE006811668Open in IMG/M
3300028909|Ga0302200_10003713All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae12701Open in IMG/M
3300028909|Ga0302200_10279360All Organisms → cellular organisms → Bacteria → Acidobacteria806Open in IMG/M
3300029907|Ga0311329_10154871All Organisms → cellular organisms → Bacteria1810Open in IMG/M
3300029916|Ga0302148_1003311All Organisms → cellular organisms → Bacteria4873Open in IMG/M
3300029917|Ga0311326_10009028All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae6368Open in IMG/M
3300029919|Ga0302141_1004589All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3873Open in IMG/M
3300029920|Ga0302142_1001239All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00688422Open in IMG/M
3300029920|Ga0302142_1002387All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae6336Open in IMG/M
3300029920|Ga0302142_1034916All Organisms → cellular organisms → Bacteria1606Open in IMG/M
3300029920|Ga0302142_1052925Not Available1278Open in IMG/M
3300029954|Ga0311331_11238434Not Available626Open in IMG/M
3300029956|Ga0302150_10006574All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4856Open in IMG/M
3300029956|Ga0302150_10006909All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00684723Open in IMG/M
3300029956|Ga0302150_10014780All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3135Open in IMG/M
3300029982|Ga0302277_1016993All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4142Open in IMG/M
3300029982|Ga0302277_1022958All Organisms → cellular organisms → Bacteria3411Open in IMG/M
3300029992|Ga0302276_10012217All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria6545Open in IMG/M
3300029994|Ga0302283_1003684All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE006811775Open in IMG/M
3300029994|Ga0302283_1011157All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae5703Open in IMG/M
3300030004|Ga0302186_10012924All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4536Open in IMG/M
3300030004|Ga0302186_10091428All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00681147Open in IMG/M
3300030004|Ga0302186_10307413Not Available528Open in IMG/M
3300030011|Ga0302270_10014863All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae6371Open in IMG/M
3300030044|Ga0302281_10001997All Organisms → cellular organisms → Bacteria14666Open in IMG/M
3300030049|Ga0302191_10015620All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00683913Open in IMG/M
3300030049|Ga0302191_10029195All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2622Open in IMG/M
3300030049|Ga0302191_10039034All Organisms → cellular organisms → Bacteria2163Open in IMG/M
3300030225|Ga0302196_10000766All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae30448Open in IMG/M
3300030506|Ga0302194_10009405All Organisms → cellular organisms → Bacteria5730Open in IMG/M
3300030506|Ga0302194_10014605All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii4462Open in IMG/M
3300030506|Ga0302194_10032742All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2702Open in IMG/M
3300030506|Ga0302194_10068119All Organisms → cellular organisms → Bacteria1670Open in IMG/M
3300030506|Ga0302194_10123226Not Available1126Open in IMG/M
3300030508|Ga0302185_10004509All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae8210Open in IMG/M
3300030508|Ga0302185_10013691All Organisms → cellular organisms → Bacteria3993Open in IMG/M
3300030508|Ga0302185_10167540Not Available757Open in IMG/M
3300030508|Ga0302185_10230038All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae628Open in IMG/M
3300030519|Ga0302193_10000632All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae31551Open in IMG/M
3300030519|Ga0302193_10023741All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 894316Open in IMG/M
3300030519|Ga0302193_10543967Not Available567Open in IMG/M
3300031259|Ga0302187_10002662All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE006814631Open in IMG/M
3300034130|Ga0370494_000884All Organisms → cellular organisms → Bacteria → Acidobacteria7650Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog66.99%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog15.53%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog5.83%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil5.83%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen2.91%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen1.94%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.97%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300014199Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaGEnvironmentalOpen in IMG/M
3300014492Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaGEnvironmentalOpen in IMG/M
3300014493Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaGEnvironmentalOpen in IMG/M
3300014499Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaGEnvironmentalOpen in IMG/M
3300014838Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014839Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300019787Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300022824Peat soil microbial communities from Stordalen Mire, Sweden - IR.B.S.T-25EnvironmentalOpen in IMG/M
3300022872Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25EnvironmentalOpen in IMG/M
3300023060 (restricted)Peat soil microbial communities from Stordalen Mire, Sweden - IR.B.S.T0EnvironmentalOpen in IMG/M
3300026502Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T-25.r1EnvironmentalOpen in IMG/M
3300028090Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25.v15EnvironmentalOpen in IMG/M
3300028552Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_1EnvironmentalOpen in IMG/M
3300028560Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_2EnvironmentalOpen in IMG/M
3300028562Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_3EnvironmentalOpen in IMG/M
3300028565Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_3EnvironmentalOpen in IMG/M
3300028566Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_2EnvironmentalOpen in IMG/M
3300028572Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_1EnvironmentalOpen in IMG/M
3300028574Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_2EnvironmentalOpen in IMG/M
3300028745Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_3EnvironmentalOpen in IMG/M
3300028748Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2EnvironmentalOpen in IMG/M
3300028762Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_3EnvironmentalOpen in IMG/M
3300028765Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_2EnvironmentalOpen in IMG/M
3300028766Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_2EnvironmentalOpen in IMG/M
3300028859Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_1EnvironmentalOpen in IMG/M
3300028860Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_3EnvironmentalOpen in IMG/M
3300028866Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2EnvironmentalOpen in IMG/M
3300028867Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_3EnvironmentalOpen in IMG/M
3300028873Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_1EnvironmentalOpen in IMG/M
3300028874Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_1EnvironmentalOpen in IMG/M
3300028882Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3EnvironmentalOpen in IMG/M
3300028909Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_1EnvironmentalOpen in IMG/M
3300029907I_Bog_N1 coassemblyEnvironmentalOpen in IMG/M
3300029916Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_1EnvironmentalOpen in IMG/M
3300029917I_Bog_E1 coassemblyEnvironmentalOpen in IMG/M
3300029919Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_2EnvironmentalOpen in IMG/M
3300029920Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_3EnvironmentalOpen in IMG/M
3300029954I_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029956Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_2EnvironmentalOpen in IMG/M
3300029982Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_1EnvironmentalOpen in IMG/M
3300029992Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_3EnvironmentalOpen in IMG/M
3300029994Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_4EnvironmentalOpen in IMG/M
3300030004Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_1EnvironmentalOpen in IMG/M
3300030011Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_3EnvironmentalOpen in IMG/M
3300030044Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_2EnvironmentalOpen in IMG/M
3300030049Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_1EnvironmentalOpen in IMG/M
3300030225Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_3EnvironmentalOpen in IMG/M
3300030506Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_1EnvironmentalOpen in IMG/M
3300030508Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_2EnvironmentalOpen in IMG/M
3300030519Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_3EnvironmentalOpen in IMG/M
3300031259Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_3EnvironmentalOpen in IMG/M
3300034130Peat soil microbial communities from wetlands in Alaska, United States - Collapse_03_16EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
Ga0181535_1008547133300014199BogVDEIEAGYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML*
Ga0181535_1015400423300014199BogYSIFDSGVYRILAVRWLFPQEKATFDALVMSTSEAKML*
Ga0181535_1031045523300014199BogIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML*
Ga0181535_1035420723300014199BogKCCSEQSRSRWTAAYSIFVSGVYRILAVKWLFPQEKATFDALVMSTSEAKMLEL*
Ga0181535_1046897313300014199BogSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML*
Ga0181535_1088501823300014199BogFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML*
Ga0182013_1005458143300014492BogVMRFRKSIFASGVYRILAVKWLFPQEKATFDALVMSTSEAKML*
Ga0182013_1012089413300014492BogSGVYRILAVKWLFPQEKATFDALVMSTSEAKMLEL*
Ga0182013_1036946613300014492BogMAPARRYSIFDSGVYRILAVKWLFPQEKSTFDALVMSTSEAK
Ga0182013_1040403723300014492BogYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML*
Ga0182013_1046443633300014492BogSIFASGVYRILAVKWLFPQEKATFDALVMSTSEAKML*
Ga0182013_1060249823300014492BogCFCGYSIFDSGVYRIYTAKWLFPQEKATFDALVMSISEAKML*
Ga0182013_1064253613300014492BogDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML*
Ga0182016_1000415863300014493BogMEIVVLLYSIFDSGVYRIHAEKWLFPQEKATFDSLLMSTSEAKML*
Ga0182016_1001695913300014493BogALYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEANRL*
Ga0182016_1002990163300014493BogCANYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML*
Ga0182012_1063935523300014499BogLICANYSIFDSGVYRILAVKWLFPQEKATFDALVMST
Ga0182030_1008043753300014838BogYSIFDSGVYRIHAEKWLFPQEKATFDSLLMSTSEAKML*
Ga0182030_1021842713300014838BogPDYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML*
Ga0182030_1061626033300014838BogLPPRGKRYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML*
Ga0182030_1120657723300014838BogGYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML*
Ga0182027_1075817813300014839FenDSGVYRIYTAKWLFPQEKATFDALVMSISEAKML*
Ga0182027_1221770023300014839FenGMEIVVLLYSIFDSGVYRIHAAKWLFPQEKAVFHASLW*
Ga0182031_134385643300019787BogYSIFASGVYRILAVKWLFPQEKATFDALVMSTSEAKLL
Ga0224518_100017343300022824SoilVDEIEAGYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0224518_100322913300022824SoilIFDSGVYRILAVRWLFPQEKATFDALVMSTSEAKML
Ga0224526_100003583300022872SoilMEIVVLLYSIFDSGVYRIHAEKWLFPQEKATFDSLLMSTSEAKML
(restricted) Ga0224519_100209113300023060SoilRSRWTAAYSIFVSGVYRILAVKWLFPQEKATFDALVMSTSEAKMLEL
Ga0255350_100380063300026502SoilNYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0255349_100141793300028090SoilICANYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302149_100434443300028552BogVDEIEAGYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKIL
Ga0302144_1000260253300028560BogYSIFDSGVYRILAVRWLFPQEKATFDALVMSTSEAKML
Ga0302151_1003586213300028562BogIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302151_1008680623300028562BogSIFDSGVYRILAVRWLFPQEKATFDALVMSTSEAKML
Ga0302145_1003797113300028565BogLIAWSRNYNIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302145_1007463813300028565BogPYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302147_1000060213300028566BogLQNQRGLYSIFDSGVYRILAVRWLFPQEKATFDALVMSTSEAKML
Ga0302147_1000129013300028566BogFDSGVYRILAVRWLFPQEKATFDALVMSTSEAKKL
Ga0302147_1003833743300028566BogVDEIEAGYSIFDSGVYRILAVKWLFPQEKATFDALVMSTS
Ga0302152_1000988553300028572BogCANYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302152_1032830923300028572BogSIFDSGVYRIYTAKWLFPQEKATFDALVMSISEAKIL
Ga0302153_1001060043300028574BogFDSGVYRILAVRWLFPQEKATFDALVMSTSEAKML
Ga0302153_1001819213300028574BogHFSPDYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302267_1002599943300028745BogAYSIFASGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302156_1012105013300028748BogHAEVRYSIFDSGVYRIYTAKWLFPQEKATFDALVMSISEAKML
Ga0302202_1043313223300028762BogEVRYSIFDSGVYRIYTAKWLFPQEKATFDALVMSISEAKML
Ga0302198_10000069753300028765BogMEIVVLLYSIFDSGVYRIHAEKWLFPQEKATIDSLLMSTSEAKML
Ga0302269_101714413300028766BogIFDSGVYRIHAEKWLFTQEKATFDALVMSTSEAKML
Ga0302265_101133443300028859BogVLFSCAYSIFASGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302199_1000636203300028860BogYSIFASGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302199_100764913300028860BogVDEIEAGYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSE
Ga0302199_108762513300028860BogYGSNSFFDSGVYRILAVKWLFPQEKSTFDALVMSTSEAKML
Ga0302278_100000631103300028866BogWLQNQRGLYSIFDSGVYRILAVRWLFPQEKATFDALVMSTSEAKML
Ga0302278_10000124753300028866BogMEIVVLLYSIFDSGVYRIHAEKWLFPQEKATFDSLLMSTSEAKLL
Ga0302278_1001288173300028866BogSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302146_1002249033300028867BogYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302146_1003223033300028867BogFDSGVYRIHAEKWLFPQEKATFDSLLMSTSEAKML
Ga0302146_1007507913300028867BogVDEIEAGYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEA
Ga0302197_1000823083300028873BogANYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302155_1002909813300028874BogFDSGVYRIHADKWLFPQKKATFDSLLMSTSEAKML
Ga0302154_1000339593300028882BogVDEIEAGYSIFDSGVYRILAVKWLFPQEKATFDALVMST
Ga0302200_10003713113300028909BogYSIFDSGVYRILAVKWLFPQEKATFDTLVMSTSEAKML
Ga0302200_1027936013300028909BogFDSGVYRIHAEKRLFPQEKATFDSLLMSTSEAKML
Ga0311329_1015487133300029907BogALYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEANRL
Ga0302148_100331143300029916BogVDEIEAGYSIFASGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0311326_1000902853300029917BogMVQHRSAYSIFASGVYRILAVKWLFPQEKATFDALVMSTSEAKM
Ga0302141_100458913300029919BogSSYSIFDSGVYRIHAEKWLFPQEKATFDSLLMSTSEAKML
Ga0302142_100123913300029920BogDYLIAWSRNYNIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302142_100238713300029920BogEQSRSRWTAAYSIFVSGVYRILAVKWLFPQEKATFDALVMSTSEAKMLEL
Ga0302142_103491653300029920BogFFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302142_105292523300029920BogFDAGVYRILAVKWLFTQEKATFDALVMSTSEAKML
Ga0311331_1123843413300029954BogFCGYSIFDSGVYRIYTAKWLFPQEKATFDALVMSISEAKML
Ga0302150_1000657413300029956BogKSAIHLASYSIFDSGVYRILAVKRLFPQEKATFDALVMSTSEAKML
Ga0302150_1000690933300029956BogGNRYSIFDSDVYRILAVKRLFPQEKATFDALVMSTSEAKML
Ga0302150_1001478033300029956BogLDGRFLGYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302277_101699373300029982BogRYRKGRDYSIFASGVYRILAVKWLFPQEKATFDALVMPTSEAKML
Ga0302277_102295833300029982BogMEIVVLLYSIFDSGVYRIHAEKWLFPQEKATFDSLLMST
Ga0302276_1001221713300029992BogGGWGLICANYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302283_100368413300029994FenVDEIEAGYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKM
Ga0302283_101115773300029994FenSFFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302186_1001292413300030004BogWTAAYSIFVSGVYRILAVKWLFPQEKATFDALVMSTSEAKMLEL
Ga0302186_1009142833300030004BogYKDLRYSIFDSGVYRIHAEKWLFPQEKATFDSLLMSTSEAKML
Ga0302186_1030741313300030004BogWSRNYNIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302270_1001486353300030011BogMVQHRSAYSIFASGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302281_10001997163300030044FenGYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302191_1001562073300030049BogQLKDFSVRYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302191_1002919513300030049BogLYSIFDSGVYRIHAEKWLFPQEKATFDSLLMSTSEAKML
Ga0302191_1003903413300030049BogSNSFFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302196_1000076613300030225BogVDEIEAGYSIFDSGVYRILAVKWLFPQEKATFDAL
Ga0302194_1000940563300030506BogRGGYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302194_1001460513300030506BogSIFESGVYRILAVRWLFPQEKATFDALVMSTSEAKML
Ga0302194_1003274213300030506BogYSIFDSGVYRIHAEKWLFPQEKATFDALVMSTSEAKML
Ga0302194_1006811913300030506BogASYSIFDSGVYRIHAEMWLFPQEKATFDSLLMSTSEAKML
Ga0302194_1012322613300030506BogRNYNIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302185_1000450913300030508BogCEFNHFSPDYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302185_1001369113300030508BogSKVLFSCAYSIFASGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302185_1016754013300030508BogLICANYSIFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0302185_1023003813300030508BogSIFDSGVYRILAVKRLFPQEKATFDALVMSTSEAKML
Ga0302193_1000063283300030519BogMEIVVLLYSIFDSGVYRIHAEKWLFPQEKATFDSHLMSTSEAKML
Ga0302193_1002374113300030519BogSYSIFDSGVYRIHAEKWLFPQEKATFDSLLMSTSEAKML
Ga0302193_1054396723300030519BogSDYSIFDSGVYRIYTAKWLFPQEKATFDALVMSISEAKIL
Ga0302187_1000266213300031259BogFDSGVYRILAVKWLFPQEKATFDALVMSTSEAKML
Ga0370494_000884_3_1073300034130Untreated Peat SoilMEIVVLLYSIFDSGVYRIHAEKWLFPQEKATFDSL


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.