Metagenome Family F098768

Basic Information
Family ID	F098768
Family Type	Metagenome
Number of Sequences	103
Average Sequence Length	58 residues
Representative Sequence	VRVGKAYKCPQMNTMKVLVHEIFEFGGFCTWPRLAVHHGIARWLGGEFCEKLKFVIFEM
Number of Associated Samples	8
Number of Associated Scaffolds	93

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	20.00 %
% of genes near scaffold ends (potentially truncated)	1.94 %
% of genes from short scaffolds (< 2000 bps)	4.85 %
Associated GOLD sequencing projects	6
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Most Common Taxonomy
Group	Unclassified (90.291 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules (60.194 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (100.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.23% β-sheet: 0.00% Coil/Unstructured: 59.77%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 93 Family Scaffolds
PF14223	Retrotran_gag_2	1.08

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
All Organisms	root	All Organisms	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
cellular organisms	root	All Organisms → cellular organisms	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
eudicotyledons	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
Gunneridae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
Pentapetalae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
rosids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
fabids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
Fabales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
Fabaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
Papilionoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
50 kb inversion clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
NPAAA clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
indigoferoid/millettioid clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
Phaseoleae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
Vigna	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
Vigna unguiculata	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	9.71 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300021320\|Ga0214544_1022612	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	3740	Open in IMG/M
3300021320\|Ga0214544_1030908	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	1816	Open in IMG/M
3300021320\|Ga0214544_1037262	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	1207	Open in IMG/M
3300021320\|Ga0214544_1040126	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	1044	Open in IMG/M
3300021321\|Ga0214542_1033921	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	1687	Open in IMG/M
3300021324\|Ga0214545_1031114	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	2195	Open in IMG/M
3300021327\|Ga0214543_1026398	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	3129	Open in IMG/M
3300027296\|Ga0209389_1078384	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	1644	Open in IMG/M
3300027357\|Ga0209589_1026142	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	4054	Open in IMG/M
3300027357\|Ga0209589_1026142	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	4054	Open in IMG/M

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	100.00%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	100.00%

Habitat	Taxonomy	Distribution
Root Nodules	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules	60.19%
Root Nodules	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules	39.81%

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0099822_10495202	3300006943	Root Nodules	MVGKASNCPQMNTMKVLVHEIFEFGGFCTWPSLAVHHGIARWLGGEFYEKMKFVIFEM*
Ga0099822_10529801	3300006943	Root Nodules	MVGKASKCPQINTMKVLVHESFEFGGFCTWPSLAVHHGIARWLGGEFYEKMKFVIIEM*
Ga0099822_10990821	3300006943	Root Nodules	MVGKASKCPQIKTMKVLVHESFEFGGFCTWPSFAVHHGIARWLGGEFYEKLKFVIFEM*
Ga0099822_11014681	3300006943	Root Nodules	DVRVGKAYKCPQMNTMKVLVHESFEFGGFCTWPRLKVHHGIARWLGGEFYEKMKFVIFEM
Ga0099822_11058532	3300006943	Root Nodules	VRVGKAYKCPQMNTMKVLADESFEFGGFCTWPSLAVHHGIARWLGGEFYEKMKLVIFEM*
Ga0099822_11105281	3300006943	Root Nodules	VRVGKAYKCPKMSTMKVLVHKSFEFGGFCTLPRLAVHHGIARWLGGEFYEKLKFVILEM*
Ga0099822_11106801	3300006943	Root Nodules	AYNCPQMNTMKVLVHESFEFGGFCTWPRLAVHHVIARWLGGEFCEKMKFVIFDM*
Ga0099822_11136592	3300006943	Root Nodules	VRVGKAYKTPQLNTIKFLVHEIFEFGGFCTWPRLAVHHSIARWLGGEFCEKMKFVIFEM*
Ga0099822_11165672	3300006943	Root Nodules	MVGKASNCPQMNTMKVLVHEIFEFGGFCTWPSWSVHHGIARWLGEEFYEKMKFVIFEM*
Ga0099822_11165673	3300006943	Root Nodules	SKCAQMNTMKVLVHESFEFGGSCTYPSWSVHHGIARWLGGEFYEKMKFVIFEM*
Ga0099822_11169472	3300006943	Root Nodules	VRVGKAYKCPQMNTMKVLVHEIFEFGGFCTGPSWSVHDGIARWLGGEFCEKLKFGTFEM*
Ga0099823_10723812	3300006944	Root Nodules	DVRVGKAYKCHQMNTMKVLVHEIFEFGGFCTWPRLAVPHGIARWLGWKVCEKMKFVIFEM
Ga0099823_10772442	3300006944	Root Nodules	VRVGMAYKCPQMNTMKVLVHEIFEFGGFCTWPRLAVHHDIARWLGGEFCEKLKFVVFMM*
Ga0099823_11349462	3300006944	Root Nodules	MVGKASKCPQMNKMKVLVHESFEFGGFCTWPSLAVHHDIARWLGGEFYEKMKFVIFEM*
Ga0099823_11370872	3300006944	Root Nodules	VRVGKAYKCPQMNTMKVLVHEIFEFGGFCTWPRLAVHHGIARWLGGEFCEKLKFVIFEM*
Ga0099823_11434512	3300006944	Root Nodules	VGKAYKFPQMNIMKVLLHEIFEFGGFCTWPRLAVHHGIARLIHGEFCEKMKFVIFDLLGLERHTNVPK*
Ga0099823_11519332	3300006944	Root Nodules	VRVGKAYKCPQLNTMNVLVHESFEFGGFYTRPSLAVHHDVTRWLGGEFYEKMKFVIFEM*
Ga0214544_102261212	3300021320	Root Nodules	VRFGLASKFPQMNTMKVWVHKIFEFGGFCTWPSWSVHHGIARCPGGEFCEKLKFVVFES
Ga0214544_10248965	3300021320	Root Nodules	VRVGKAYKTPQLNTIKFLVHEIFEFGGFCTWPRLAVHHSIARWLGGEFCEKMKFVIFEM
Ga0214544_10255065	3300021320	Root Nodules	MVGKASNCPQMNTMKVLVHEIFEFGGFCTWPSWSVHHGIARWLGEEFCEKMKFVIFEIFE
Ga0214544_10255066	3300021320	Root Nodules	MVGKASNCPQMNTMKVLVHEIFEFGGFCTWPSWSVHHGIARWLGEEFYEKMKFVIFEM
Ga0214544_10255067	3300021320	Root Nodules	TSKCAQMNTMKVLVHESFEFGGSCTYPSWSVHHGIARWLGGEFYEKMKVVIFEM
Ga0214544_10259944	3300021320	Root Nodules	VRDGKAYICPQMNTMKFLVHESFEFGGFCMWPRLAVHHGMARWLGGEVCEKMKFVVFGM
Ga0214544_10268482	3300021320	Root Nodules	VKVGMASKCPQINTMKVLVHKIFEFGGFCTWPSLAVGHGLARLLGREFREKQKFMVFEM
Ga0214544_10277135	3300021320	Root Nodules	MVGKAFKCPQMNKMKVLVHESFEFGGFCTWASLAVHHGIARWLGGEFYEKMKFVIFEL
Ga0214544_10294922	3300021320	Root Nodules	VRVGKAYNCPQMNTMKVLVHESFEFGGFCTWPSLAVHDGIARWLGGEFCEKLKFVVFEI
Ga0214544_10294924	3300021320	Root Nodules	VRVGKAYNCPQMNTMKVLVHESFEFGGFCTCPSLAVHHGIARWLGGEFCEKMKFIIFEM
Ga0214544_10295824	3300021320	Root Nodules	MVGKASKCHQMNTMKVLVHESFEFGGFCTWPSLAVHHGIARWLGGEFYEKMKFVILEMGWLERPPNVPK
Ga0214544_10295826	3300021320	Root Nodules	MVGKASKCPQIKTMKVLVHESFEFGGFCTWPSFAVHHGIARWLGGEFYEKLKFVIFEM
Ga0214544_10309084	3300021320	Root Nodules	MVGKASKCPQMNKMKVLVHESFEFGGFCTWPSLAVHHGIARWLGGEFYEKMKFVIFEM
Ga0214544_10327414	3300021320	Root Nodules	MVGKASKCPQMNKMKVLKHESFQFGGFCTWPSLAVHHGIARWLGGEFYEKMKFVIFEM
Ga0214544_10346205	3300021320	Root Nodules	MNTMKVLVHESFEFGGFCTWPSLTVHHGIARWLGGEFYEKMKFVIFEM
Ga0214544_10362981	3300021320	Root Nodules	VRVGKAYKCPQMNTMKVLVHEIFEFGGFCTGPSWSVHHGIARWLGGEFSEKLKFVTFEM
Ga0214544_10372622	3300021320	Root Nodules	VRVGKASKCPQMNTMKVLVHESFEFGGFCTWPRFAVHHGIARWLGGEFYEKMKFVIFEM
Ga0214544_10382142	3300021320	Root Nodules	MDGKTSKCPQMNTMKVLVHESFEFGGFWTWPCLAVHHGIARWLGGEFYEKMKFVIFAM
Ga0214544_10401261	3300021320	Root Nodules	VRVGKAYKCPKMSTMKVLVHKSFEFGGFCTLPRLAVHHGIARWLGGEFYEKLKFVILEM
Ga0214544_10413213	3300021320	Root Nodules	VGKAYKFPQMNIMKVLLHEIFEFGGFCTWPRLAVHHGIARLIHGEFCEKMKFVIFDLLGLERPPNFPK
Ga0214544_10414003	3300021320	Root Nodules	MVGKASKCPQMNTMKVLVHESFEFGGFCTWPSLAVHHGIARWLGGEFYEKMQFVIFEM
Ga0214544_10414004	3300021320	Root Nodules	MDGKASKCPQMNTMKVLVHESFEIGGFCTWPCLAVHHGIARWLGGEFYEK
Ga0214544_10434922	3300021320	Root Nodules	VRVGKAYNCPQMNTMKVLVHESFEFGGFCTWPRFAVHHVIARWLGGEFCEKMKFVIFEM
Ga0214544_10437461	3300021320	Root Nodules	VRVGKAYKCPQMNTMKVLVHEIFEFGGFCTWPRLAVHHAIARWLGGEFCEKLKFVIFEM
Ga0214544_10443333	3300021320	Root Nodules	EICGFCDVRVGKAYNCPQMNTMKVLVHESFEFGGFCTWPRLAVHHGIARWLGGEFCETRKFVVFEM
Ga0214544_10446913	3300021320	Root Nodules	MNTMKVLVHETFEFGGFCTWPSLAVHHGIARWLGGEFYEKMKFVILEMGWLERPPNVPK
Ga0214544_10462112	3300021320	Root Nodules	MPINVHEMNTMKVLVHEIFEFGGFCTWPRLSVHHGQARWLAGEFCEKLKFVVFEI
Ga0214544_10497511	3300021320	Root Nodules	QMNTMKVLVHESFEIGGFCTWPCLAVHHGIARWLGGEFYEKMKFVIFAM
Ga0214544_10503151	3300021320	Root Nodules	VRVGKAYKSPQMSTMKVLVHEIFEFSGFYTGPSWSVHHGRARWLDGEFCEKMKFVILEM
Ga0214544_10511601	3300021320	Root Nodules	VRVGKAYICPQMNTMKVLVHESFEVGGFCTWPRLAVHHGIARWLGGEFYEKMKFVIFEM
Ga0214544_10513062	3300021320	Root Nodules	MVGKASKCPQIKTMKVLVHESFEFGGFCTWPSLAVHHGIARWLGGEFYEKMKFVIFEM
Ga0214544_10547113	3300021320	Root Nodules	VRVGKAYKCPQMNTMKVLVHESFEFGGFCTRPSLAVHHGIDRWLGGEFYEKMKFVIFEM
Ga0214544_10550072	3300021320	Root Nodules	QMNTMKVLVHESFEFGGFCTWPSLTVHHGIARWLGGEFYEKMKFVIFEM
Ga0214544_10558292	3300021320	Root Nodules	VRVGKAYKCPQMNTMKFLVHEIFEFGGFCTWPRLAVDHDIGRWLGGEFCEKMKFMIFDM
Ga0214542_101604716	3300021321	Root Nodules	VGVVIAYKCPQMNTMKVLVHEIFEFGGFCTLPSWSVHHGIGRWLGGEFCEKLKFVIFEM
Ga0214542_10190902	3300021321	Root Nodules	VKVGLASNCPQMNTIKFLVHESFEFGRCCTRPTLVVWHGLTRCLGGEFCEKMKFMVFEK
Ga0214542_10305042	3300021321	Root Nodules	VRVGKAYKCPQTKTMKVLLHEIFEFGGFCTWPRFAVHHGLARWLGGEFCEQKKFVIFEM
Ga0214542_10339213	3300021321	Root Nodules	VRDGKAYNCPQMNTMKVLVHESFEFGGFCTWPRLAVHHVIARWLGGKFCEKMKFVIFEM
Ga0214542_10389982	3300021321	Root Nodules	VRVGKAYNCPQMNTMKVLVHESFEFGGFCTWPSLAVHDGIARWLGGEFCEKLKFVVFEM
Ga0214542_10453223	3300021321	Root Nodules	VGKAYKFPQMNIMKVLLHEIFEFGGFCTWPRLAVHHGIARLIHGEFCEKMKFVIFDLLGLER
Ga0214542_10488033	3300021321	Root Nodules	MVGLPSKCPQMNTMKVLVHESFEFGGFCTWPSLAVHHGIARWLGGEFYEKMKFVILEMGWLERPPNVPK
Ga0214542_10500653	3300021321	Root Nodules	VRVGKAYKCPQMNTMKVFVHEIFEFGGFCTGPSWSVHHGLARWLGGEFCEKLKFVTFEM
Ga0214542_10503241	3300021321	Root Nodules	VRVGKAYKCHQMSTMKVLVHEIFEFSGFYIGPSWSVHHGIARWLGGEFCEQLKFVILEM
Ga0214542_10503242	3300021321	Root Nodules	MGKAYKCPQINTMKVLMHESFEFGGFCTWPRLAVHHGIARWLGGEFCEKLKFVIFEM
Ga0214542_10517145	3300021321	Root Nodules	VMDGKASKCPQMNTMKVLVHESFEIGGFCTWPCLAVHHGIARWLGGEFYEK
Ga0214542_10524213	3300021321	Root Nodules	MNTMKVLVHEIFEFGGFCTWPRLAAPHDIARWLGWEFCEKMKFVIFEM
Ga0214542_10544553	3300021321	Root Nodules	PQMSTMKVLVHEIFEFGGFCTGPSWSVHHGIARWLGGEFCEKVKFVIFEM
Ga0214542_10551571	3300021321	Root Nodules	VGKAYKCPQMNTMKVLVHESFEFGGFCTRPSLAVHHGIDRWLGGEFYEKMKFVIFEM
Ga0214542_10594681	3300021321	Root Nodules	KCPQMYTMKVLVHERFEFGGFCTWPSLAVHHGRARWLGGEFYEKMKFVIFEMWGLNWPPNAPE
Ga0214542_10624872	3300021321	Root Nodules	VRVGNAYKCPQIHTTKVLVHGSVVFGGFCTWPSLAVHHGIARWLGGEFYEKMKFVVFEM
Ga0214542_10626572	3300021321	Root Nodules	VRVGKAYKCPQMNTMKVLVHEIFEFGGFCTGPSWSVHHGIARWLGGEFCEKFKFVIFGM
Ga0214542_10626573	3300021321	Root Nodules	VRVGKAYKCPQMNTMKVLVHEIFEFGGFCTGPSWSVHHGIARWLGWEYCEKLKFVTFEM
Ga0214545_102394811	3300021324	Root Nodules	VRVGKGYKCTQMSTMKVLVHEIFEFGGFCIGPSWSVHHCIARWLGGEFCEKLKFVTFEM
Ga0214545_10311147	3300021324	Root Nodules	VRGEKAYKCPHLNTMKVLVHESFEIGGFCTWPCLAVHHGTARWLGGEFCEIMKFVIFEM
Ga0214545_10413461	3300021324	Root Nodules	VIVGKAYKCPQMNTMKVLVHESFEFGGFCTWPSLTVHHGIARWLGGEFYEKMKFVIFEM
Ga0214545_10462532	3300021324	Root Nodules	VGKAYKFPQMNIMKVLLHEIFEFGGFCTWPRLAVHHGIARLIHGEFCEKMKFVIFDLLGLERHTNVPK
Ga0214545_10469512	3300021324	Root Nodules	MAYKCPQMNTMKVLVHEIFEFGGFCTWPRLAVHHDIARWLGGEFCEKLKFVVFMM
Ga0214543_10263981	3300021327	Root Nodules	VRVGTAYKCPQMNTMKVLVHEIFEFGGFCTWPSSSVHHDIARWLGEEFFEKMKFVVFEM
Ga0214543_10294002	3300021327	Root Nodules	VRVGKAYKCHQMNTMKVLVHEIFEFGGFCTWPRLAVPHGIARWLGWKFCEKMKFVIFEM
Ga0214543_10304273	3300021327	Root Nodules	MVGKASNCPQMNTMKVLVHEIFEFGGFCTWPSWSVHHGIARWLGEEFCEKMKFVIF
Ga0214543_10368283	3300021327	Root Nodules	VRVGKAYNCPQMNTMKVLVHESFEFGGFCTWPRLAVHQGIVGWLGGEFCEKSKFVVFEM
Ga0214543_10488162	3300021327	Root Nodules	MVGKASKRPQMNTMKVLVHESFEFGGFCTWPSLTVHHGIARWLGGEFYEKMKFVIFEM
Ga0209389_10783843	3300027296	Root Nodules	FFDVRVGKAYKCPQMTTMKVLVHESFEFGGFCTGPSWSVHHGIARWLGGEFYEKMKFVIFEM
Ga0209389_10791012	3300027296	Root Nodules	VIVGKAYKCPQMNTMKVLVHESFEFGGFCTWPSLAVHHGKARWLGGEFYEKMKFVIFEM
Ga0209389_11087411	3300027296	Root Nodules	YNCPQMNTMKVLVHESFEFGGFCTWPRLAVHQGIVGWLGGEFCEKSKFVVFEM
Ga0209389_11124412	3300027296	Root Nodules	VRVGKAYKCPQMNTMKVLVHEIFEFGGFCTGPSWSVHDGIARWLGGEFCEKLKFGTFEM
Ga0209389_11220572	3300027296	Root Nodules	VKVGMASKCPQMNTMKVLVHKIFEFGGFCTWPSLAVGHGLARLLGREFREKQKFMVFEM
Ga0209389_11222272	3300027296	Root Nodules	VRVGKAYKCPQMNTMKVLVHEIFEFGGFCTWPRLAVHHGIARWLGGEFCEKLKFVIFEM
Ga0209389_11245831	3300027296	Root Nodules	MVGKASKCPQMNTMKVLVHESFEFGGFCRWPSLAVHHGITRWLGGEFYEKMKFVIFEM
Ga0209389_11288582	3300027296	Root Nodules	MVGKASNCPQMNTMKVLVHKSFKFGGFCSWPKLAVHHDIARWLGGEFCEKMKFVIFEM
Ga0209389_11349931	3300027296	Root Nodules	VRVGKAYKCPQMNTMTVLVHESFEFGGFCTWPRLAVHHGIARWLGGEFCEKLKFAIFEM
Ga0209589_102614213	3300027357	Root Nodules	TSKCAQMNTMKVLVHESFEFGGSCTYPSWSVHHGIARWLGGEFYEKMKFVIFEM
Ga0209589_10261428	3300027357	Root Nodules	MVGKASNCPQMNTMKVLVHEIFEFGGFCTWPSLAVHHGIARWLGGEFYEKMKFVIFEM
Ga0209589_10306231	3300027357	Root Nodules	VRVGEAYKCPQMSTMKVLVHEIFEFSGFYSGPSWSVHNGRARWLGGEFCEKLKFVILEM
Ga0209589_10384632	3300027357	Root Nodules	VRVGKAYKCPQMNTMKVLVHEIYEFGGFCTGPSWSVHHGIARWLGGEFSEKLKFMTFEM
Ga0209589_10412082	3300027357	Root Nodules	MNIMKVLLHEIFEFGGFCTWPRLAVHHGIARLIHGEFCEKMKFVIFDLLGLERPPNFPK
Ga0209589_10468612	3300027357	Root Nodules	VRVGKAYNCPQMNTMKVLVHESFEFGGFCTCPSLAVHHGIARWLGGEFCETMKFIIFEM
Ga0209589_10498382	3300027357	Root Nodules	VRVGKAYKCPQMNNMKVLVHEIFEVGGFCTWPSLAVPHGIARWLGEEFCEKMKFVIFEM
Ga0209589_10539482	3300027357	Root Nodules	VRVGKAYKCPQMNTMKVLVHEIFKFGGFCTWPSWSVHHGIARWLGGEFCEKMKFMIFEM
Ga0209589_10572392	3300027357	Root Nodules	VRVGKAYKCPQMNTMKVLADESFEFGGFCTWPSLAVHHGIARWLGGEFYEKMKLVIFEM
Ga0209589_10583142	3300027357	Root Nodules	MAGKASKCPQMNTMKVLVHESFEFGGFCTWPSLAVHHGIARWLGGEFYEKMKFVIFER
Ga0209589_10583143	3300027357	Root Nodules	MVGKASICPQMNTMKVLVHESFEFGGFCTWPILAVHHGIARWLGGEFYQKMKFVIFEM
Ga0209589_10639942	3300027357	Root Nodules	VRVGKAYKCPQMNTMKVLVHESFQFGGFCTWPRLAVHHGIARWLGGEFCEKLKFVIFEM
Ga0209589_10678423	3300027357	Root Nodules	DVRVGKAYKCPQMNTMKVLVHESFEFGGFCTWPSLAVHHGIDRWLGGEFYEKMKFVIFEM
Ga0209589_10688983	3300027357	Root Nodules	MDGKASKCPQMNTMKVLVHESFEIGGFCTWPCLAVHHGIARWLGGEFYEKMKFVIFAM
Ga0209589_10692051	3300027357	Root Nodules	MVGKASKCPQMNKMKVLVHESFEFGGFCTWPSLAVHHDIARWLGGEFYEKMKFVIFEM

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F098768

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300006943	Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW	Host-Associated	Open in IMG/M
3300006944	Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW	Host-Associated	Open in IMG/M
3300021320	Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3	Host-Associated	Open in IMG/M
3300021321	Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1	Host-Associated	Open in IMG/M
3300021324	Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS4	Host-Associated	Open in IMG/M
3300021327	Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2	Host-Associated	Open in IMG/M
3300027296	Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes)	Host-Associated	Open in IMG/M
3300027357	Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW (SPAdes)	Host-Associated	Open in IMG/M

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign