Metagenome / Metatranscriptome Family F098786

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098786
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	92 residues
Representative Sequence	MPTLRQTLSLSEQLALAVRCQTPVRLASTFASLEGQFYDRTPFDNLARQVHALYEPTDADVFRTRLDRRLRDRHSAPVDWTVQPATATVRRHAA
Number of Associated Samples	63
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	78.64 %
% of genes near scaffold ends (potentially truncated)	26.21 %
% of genes from short scaffolds (< 2000 bps)	98.06 %
Associated GOLD sequencing projects	58
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.66

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (53.398 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (56.311 % of family members)
Environment Ontology (ENVO)	Unclassified (57.282 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (59.223 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.90% β-sheet: 0.00% Coil/Unstructured: 54.10%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.66
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.66
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF04002	RadC	43.69
PF13155	Toprim_2	8.74
PF05173	DapB_C	0.97
PF13662	Toprim_4	0.97
PF13361	UvrD_C	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG2003	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	Replication, recombination and repair [L]	43.69
COG0289	4-hydroxy-tetrahydrodipicolinate reductase	Amino acid transport and metabolism [E]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.40 %
All Organisms	root	All Organisms	46.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.40 %
cellular organisms	root	All Organisms → cellular organisms	46.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.40 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.40 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	34.95 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	5.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.40 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	34.95 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	5.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.40 %
Thermomicrobia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	33.98 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.40 %
Sphaerobacteridae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae	33.01 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.40 %
Sphaerobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales	33.01 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.40 %
Sphaerobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae	33.01 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.40 %
Sphaerobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae	33.01 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.40 %
Nitrolancea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea	33.01 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.40 %
Nitrolancea hollandica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	33.01 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.40 %
Nitrolancea hollandica Lb	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica → Nitrolancea hollandica Lb	14.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005174\|Ga0066680_10520369	Not Available	748	Open in IMG/M
3300005180\|Ga0066685_10648797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	726	Open in IMG/M
3300005186\|Ga0066676_10467712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	855	Open in IMG/M
3300005447\|Ga0066689_10889293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	551	Open in IMG/M
3300005468\|Ga0070707_101309677	Not Available	691	Open in IMG/M
3300005533\|Ga0070734_10512353	Not Available	683	Open in IMG/M
3300005537\|Ga0070730_10117412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	1826	Open in IMG/M
3300005537\|Ga0070730_10177093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	1433	Open in IMG/M
3300005537\|Ga0070730_10390449	Not Available	902	Open in IMG/M
3300005537\|Ga0070730_10478590	Not Available	800	Open in IMG/M
3300005537\|Ga0070730_10774148	Not Available	605	Open in IMG/M
3300005552\|Ga0066701_10727301	Not Available	595	Open in IMG/M
3300005556\|Ga0066707_10493250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	795	Open in IMG/M
3300005556\|Ga0066707_10885478	Not Available	548	Open in IMG/M
3300005559\|Ga0066700_10571411	Not Available	789	Open in IMG/M
3300005569\|Ga0066705_10894011	Not Available	527	Open in IMG/M
3300005576\|Ga0066708_10533727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica → Nitrolancea hollandica Lb	756	Open in IMG/M
3300006059\|Ga0075017_100731407	Not Available	762	Open in IMG/M
3300006893\|Ga0073928_11175572	Not Available	517	Open in IMG/M
3300009012\|Ga0066710_102720172	Not Available	704	Open in IMG/M
3300009088\|Ga0099830_11480649	Not Available	565	Open in IMG/M
3300009088\|Ga0099830_11636236	Not Available	537	Open in IMG/M
3300009089\|Ga0099828_11066702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica → Nitrolancea hollandica Lb	718	Open in IMG/M
3300009089\|Ga0099828_11263867	Not Available	654	Open in IMG/M
3300009090\|Ga0099827_10575441	Not Available	970	Open in IMG/M
3300010166\|Ga0126306_10801044	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300010398\|Ga0126383_10678903	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1107	Open in IMG/M
3300011270\|Ga0137391_10691466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica → Nitrolancea hollandica Lb	848	Open in IMG/M
3300011270\|Ga0137391_11521162	Not Available	514	Open in IMG/M
3300011271\|Ga0137393_10213163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	1633	Open in IMG/M
3300011271\|Ga0137393_10580961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	961	Open in IMG/M
3300011271\|Ga0137393_10939447	Not Available	737	Open in IMG/M
3300011996\|Ga0120156_1085154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	575	Open in IMG/M
3300012010\|Ga0120118_1048834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica → Nitrolancea hollandica Lb	1072	Open in IMG/M
3300012010\|Ga0120118_1164987	Not Available	526	Open in IMG/M
3300012014\|Ga0120159_1117147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	750	Open in IMG/M
3300012014\|Ga0120159_1130710	Not Available	699	Open in IMG/M
3300012096\|Ga0137389_10356104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica → Nitrolancea hollandica Lb	1246	Open in IMG/M
3300012096\|Ga0137389_11651239	Not Available	537	Open in IMG/M
3300012189\|Ga0137388_10881285	Not Available	828	Open in IMG/M
3300012189\|Ga0137388_11081011	Not Available	739	Open in IMG/M
3300012189\|Ga0137388_11710930	Not Available	563	Open in IMG/M
3300012198\|Ga0137364_10869115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica → Nitrolancea hollandica Lb	682	Open in IMG/M
3300012201\|Ga0137365_10361361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	1072	Open in IMG/M
3300012201\|Ga0137365_11110977	Not Available	569	Open in IMG/M
3300012202\|Ga0137363_11429261	Not Available	582	Open in IMG/M
3300012204\|Ga0137374_10177828	All Organisms → cellular organisms → Bacteria	1862	Open in IMG/M
3300012204\|Ga0137374_10309915	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1291	Open in IMG/M
3300012204\|Ga0137374_10484648	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	964	Open in IMG/M
3300012204\|Ga0137374_11073939	Not Available	575	Open in IMG/M
3300012206\|Ga0137380_11572562	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300012207\|Ga0137381_10227188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica → Nitrolancea hollandica Lb	1620	Open in IMG/M
3300012207\|Ga0137381_10477035	Not Available	1088	Open in IMG/M
3300012207\|Ga0137381_10846741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	792	Open in IMG/M
3300012207\|Ga0137381_11769942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	507	Open in IMG/M
3300012209\|Ga0137379_10336718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica → Nitrolancea hollandica Lb	1419	Open in IMG/M
3300012209\|Ga0137379_11656380	Not Available	537	Open in IMG/M
3300012210\|Ga0137378_11013274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica → Nitrolancea hollandica Lb	744	Open in IMG/M
3300012211\|Ga0137377_11231603	Not Available	678	Open in IMG/M
3300012349\|Ga0137387_10547059	Not Available	840	Open in IMG/M
3300012349\|Ga0137387_10632815	Not Available	775	Open in IMG/M
3300012350\|Ga0137372_10445121	Not Available	973	Open in IMG/M
3300012350\|Ga0137372_10528730	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	874	Open in IMG/M
3300012350\|Ga0137372_11037532	Not Available	568	Open in IMG/M
3300012350\|Ga0137372_11079310	Not Available	553	Open in IMG/M
3300012353\|Ga0137367_10907113	Not Available	606	Open in IMG/M
3300012354\|Ga0137366_10874940	Not Available	634	Open in IMG/M
3300012355\|Ga0137369_10077513	All Organisms → cellular organisms → Bacteria	2795	Open in IMG/M
3300012355\|Ga0137369_10616279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica → Nitrolancea hollandica Lb	753	Open in IMG/M
3300012357\|Ga0137384_11087790	Not Available	641	Open in IMG/M
3300012358\|Ga0137368_10127011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	1921	Open in IMG/M
3300012359\|Ga0137385_10265831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	1482	Open in IMG/M
3300012359\|Ga0137385_10802258	Not Available	782	Open in IMG/M
3300012359\|Ga0137385_11037998	Not Available	676	Open in IMG/M
3300012360\|Ga0137375_10355836	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1297	Open in IMG/M
3300012362\|Ga0137361_11066387	Not Available	728	Open in IMG/M
3300012363\|Ga0137390_11373538	Not Available	651	Open in IMG/M
3300012363\|Ga0137390_11917181	Not Available	520	Open in IMG/M
3300012532\|Ga0137373_10166194	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica → Nitrolancea hollandica Lb	1847	Open in IMG/M
3300012532\|Ga0137373_10402424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	1063	Open in IMG/M
3300012972\|Ga0134077_10384610	Not Available	604	Open in IMG/M
3300013501\|Ga0120154_1066858	Not Available	840	Open in IMG/M
3300013763\|Ga0120179_1057272	Not Available	884	Open in IMG/M
3300013765\|Ga0120172_1088043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica → Nitrolancea hollandica Lb	761	Open in IMG/M
3300015371\|Ga0132258_12770268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1222	Open in IMG/M
3300018468\|Ga0066662_10634060	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1007	Open in IMG/M
3300018468\|Ga0066662_11733313	Not Available	654	Open in IMG/M
3300018468\|Ga0066662_12679576	Not Available	527	Open in IMG/M
3300019888\|Ga0193751_1210782	Not Available	641	Open in IMG/M
3300021384\|Ga0213876_10071730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica → Nitrolancea hollandica Lb	1829	Open in IMG/M
3300021861\|Ga0213853_10651148	All Organisms → cellular organisms → Bacteria	1788	Open in IMG/M
3300021861\|Ga0213853_10744295	All Organisms → cellular organisms → Bacteria	4136	Open in IMG/M
3300021861\|Ga0213853_11334099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica → Nitrolancea hollandica Lb	800	Open in IMG/M
3300025922\|Ga0207646_10446251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica → Nitrolancea hollandica Lb	1167	Open in IMG/M
3300027857\|Ga0209166_10083213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	1805	Open in IMG/M
3300027857\|Ga0209166_10144376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	1301	Open in IMG/M
3300027857\|Ga0209166_10270875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	898	Open in IMG/M
3300027857\|Ga0209166_10346917	Not Available	776	Open in IMG/M
3300027862\|Ga0209701_10504304	Not Available	657	Open in IMG/M
3300027875\|Ga0209283_10725089	Not Available	619	Open in IMG/M
3300027875\|Ga0209283_10975961	Not Available	507	Open in IMG/M
3300027882\|Ga0209590_10280744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	1067	Open in IMG/M
3300027903\|Ga0209488_11054727	Not Available	558	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.06%
Host-Associated	Host-Associated	1.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.20%
Aquatic	Environmental → Aquatic	4.85%
Plants	Host-Associated → Plants	1.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.20%
Freshwater	Environmental → Aquatic → Freshwater	2.91%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.97%
Sediment	Environmental → Aquatic → Sediment	0.97%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.97%
Roots	Host-Associated → Plants → Roots	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	91.26%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.91%
Loam	Environmental → Terrestrial → Soil → Loam	1.94%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	69.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.59%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	7.77%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.94%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	56.31%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	9.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.71%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	7.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.88%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	2.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.94%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.97%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.97%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.97%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300011996	Permafrost microbial communities from Nunavut, Canada - A39_65cm_12M	Environmental	Open in IMG/M
3300012010	Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M	Environmental	Open in IMG/M
3300012014	Permafrost microbial communities from Nunavut, Canada - A10_80cm_6M	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013501	Permafrost microbial communities from Nunavut, Canada - A35_65cm_0.25M	Environmental	Open in IMG/M
3300013763	Permafrost microbial communities from Nunavut, Canada - A15_65cm_0M	Environmental	Open in IMG/M
3300013765	Permafrost microbial communities from Nunavut, Canada - A30_80cm_6M	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066680_105203691	3300005174	Soil	MPTFRQALSLSEQLALAVRCQTPVRLALTFASLEGQFYDRIPFDNLARQVHALYEPTDADVFRTRLDRRLRDRHSAPVDWTVQPATATVRRHAA*
Ga0066685_106487971	3300005180	Soil	RRLAMPTLRQTLSLSEQLALAIRCQTPVRLAMTFASLEGQFYDRTPFDNLARQVHALYEPTDADVFRTRLDRRLRDRQSALVDWTIQAATVTARRHAA*
Ga0066676_104677122	3300005186	Soil	MPTLRQTLSLSEQLALAIRCQTPVSLASTFASLEGQFYDRTPFDNLARHVHALYEPSDADVFRTRLDRRLRDRQSAPVDWTVQPATTAVRRHAA*
Ga0066689_108892931	3300005447	Soil	MPTLRQTLSLSEQLALAVRCQTPVRLASTFASLEGQFYDRTPFDNLARQVHALYEPSDADVFRTRLDRRLRDRQSAPVDWTVQPATTAVRRHAA*
Ga0070707_1013096772	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MPTLRQTLSLSEQLALAIRCQTPVRLASTFASLEVQFYDRAPFDNLARQVHALYEPTDADVFRTRLDCRLRDRHSAPVDWTVQPAAATVRRHAA*
Ga0070734_105123532	3300005533	Surface Soil	MPTLRETLSVPEQLACAVRFHTPVQLAVTFAAFEGQFYDRQPFDDLARQVHALYAPEDADLFKRRLDRRLHDRHCAPVAWDAALPDPVVQRLA*
Ga0070730_101174121	3300005537	Surface Soil	MPTLRQTLSLSEQLALAIRCQTPVRLAATFASFEGQFYDRTPFDNLARQVHALYETSDADVFRTRLDRRLRDRHSAPVDWTVQPATTAVRRHAA*
Ga0070730_101770932	3300005537	Surface Soil	MPTLRQTLSLSEQLALAIRCQTPVRLASTFASLEGQFYDRTPFDNLARQVHALYEPSDADVFRTRLDRRLRDRNSAPVDWTVQPATAPVRRHAA*
Ga0070730_103904492	3300005537	Surface Soil	MPTLRQTLSLSEQLALAVRCQTPVRLASTFASLEGQFYDRTPFDNLARQVHALYEPTDADVFRTRLDRRLRDRHSAPVDWTVQPATATVRRHAA*
Ga0070730_104785902	3300005537	Surface Soil	MPTLRETLSVSEQLACAIRQHTPIQLAYTFAAFEGQFYDRQPFDDLARRVHALYAPEDADLFRTRLDRRLHDRHSAPIAWDVPSQGTAVGRHIA*
Ga0070730_107741481	3300005537	Surface Soil	MPTLRQTLSLPEQLALAVRCQTPVRLASTFASFEGQFYDRTPFDNLARQVHALYETCDADVFRTRLDRRLRDRHSAPVDWTVQPATTAVRRHAA*
Ga0066701_107273011	3300005552	Soil	MPTLRQTLSLSEQLALAVRCQTPVNLALTFASLEGQFYDRTPFDNLARQVHALYEPTDADLFRTRLDRRLRDRHSAPVDWTVQPTGARPRRHAA*
Ga0066707_104932502	3300005556	Soil	MPTFRQTLSLSEQLALAVRCQTPVNLALTFASLEGQFYDRTLFDNLARQVHALYEPTDADVFRTRLDRRLRDRHSAPVDWTVQPATATVRRHAA*
Ga0066707_108854782	3300005556	Soil	MPTFRQALSLSEQLALAIRCQTPVRMAMTLASFERQFYDRSPFDNLARQVHALYEPTDADVFRTRLDRRLRDRHSAPVDWTVQPATATVRRHAA*
Ga0066700_105714111	3300005559	Soil	MPTLRQTLSLAEQLALAVRCQTPVRLASTFASLEGQFYDRAPFDNLARQVHALYEPADADLFRSRLDRRLRDRHSAPVDWTVQPTPAMARRHAA*
Ga0066705_108940111	3300005569	Soil	MPTLRQTLSLSEQLALAVRCQTPVSLASTFASLEGQFYDRAPFDNLARQVHALYEPADADVFRTRLDRRLRDRHSAPVDWTVQSVTATVRRHAA*
Ga0066708_105337272	3300005576	Soil	MPTLRQTLSLSEQLALAIRCQTPLHLALTFASLEGQFYDRAPFDNLARQVHALYEPSDADVFRSRLDRRLRDRHSAPVDWTVQPATATVRR*
Ga0075017_1007314072	3300006059	Watersheds	MPTLRETLTVPEQLACAVRQHTPVQLAHTFAAFEGQFYDRLPFDDLARQVHALYAPDDADLFRTRLDRRLRDRHSAPVAWDAPPSGSVARRHVA*
Ga0073928_111755722	3300006893	Iron-Sulfur Acid Spring	MPTLRQTLSLSEQLALAVRCQTPVSLASTFASLEGQFYDRAPFDDLARQVHALYEPADADLFRSRLDRRLRDRHSAPVDWTVQPGTARVRRHAA*
Ga0066710_1027201722	3300009012	Grasslands Soil	MPTFRQTLSLSEQLALAVRCQTPVNLALTFASLEGQFYDRARFDNLARQVHALYEPTDADVFRTRLDRRLRDRQSALVDWTIQAATVTARRHAA
Ga0099830_114806491	3300009088	Vadose Zone Soil	MPTLRETLTVPEQLACAVRQHTPVQLAHTFAAFEGQFYDRLPFDDLARQVHALYAPDDADMFRTRLDRRLRDRHSAPVA
Ga0099830_116362361	3300009088	Vadose Zone Soil	VRQHTPVQLAYTFAAFEGQFYDRLPFDDLARQVHALYAPDDADLFRTRLDRRLRDRHSAPVAWNTSSPGSVARRHVA*
Ga0099828_110667022	3300009089	Vadose Zone Soil	MPTLRQTLSLSEQLALAVRCQTPVSLASTFASLEGQFYDRPPFDNLPRQVPALYEPADADLFRSRLDRRLRDRHSAPVDWTVQPATTAVRRHAA*
Ga0099828_112638672	3300009089	Vadose Zone Soil	MSTLRETLTVSDQLACAVRQHTPIQLAHTFAAVEGQFYDRLPFDDLARQVHALYAPDDADLFRSRLDRRLRDRHSAPVAWDAPLPASLAGRYVA*
Ga0099827_105754411	3300009090	Vadose Zone Soil	MPKLRETLTVPEQLACAVRQHTPVQLAHTFAAFEGQFYDRLPFDDLARQVHALYAPDDADLFRTRLDRRLRDRHSAPVAWNTSSPGSVARRHVA*
Ga0126306_108010442	3300010166	Serpentine Soil	MPTLRETLSISEQLACAVRQHTPIQLAHTFVAFEGQFYDRQPFDDLARQVHALYAPDDADLFRRRLDRRLRDRHSAPVAWDASPVLDVQRQIA*
Ga0126383_106789031	3300010398	Tropical Forest Soil	MPTFRETLSTTEQLAVAVRQHTPVRLAQTFASLEGQYDRTPFDQLARRVHALYEPADADIFRARLDRRLRDRHSATVAWDVDCPRVAGQQRAA*
Ga0137391_106914661	3300011270	Vadose Zone Soil	MPTLRQTLSLSEQLALAVRCQTPVSLASTFASLEGQFYDRAPFDNLARQVHALYEPADADLFRSRLDRRLRDRHSAPVDWTVQPAAATARRHAA*
Ga0137391_115211622	3300011270	Vadose Zone Soil	AVRCQTPVSLAMTFASLEGQFYDRTPFDNLARQVHALYEPTDADVFRTRLDRRLRDRHSAPVDWTVQRATATVRRRAA*
Ga0137393_102131632	3300011271	Vadose Zone Soil	MPTFRQALSLSEQLALAVRCQTPVRLALTFASLEGQFYDRTPFDNLARQVHALYEPTDADVFRTRLDRRLRDRHSA
Ga0137393_105809612	3300011271	Vadose Zone Soil	MPTLRQTLSLSEQLALAVRCQTPVSLALTFASLEGQFYDRTPFDNLARRVHALYEPTDADVFRTRLDRRLRDRHSAPVDWTVQPATATVRRHAA*
Ga0137393_109394472	3300011271	Vadose Zone Soil	MPTLRETLSTTEQLAVAVRQQTPVRLAQTFASFEGQFYDRTPFDDLARHVHALYEPADADTFRMRLDRRLRDRHSAPVAWDIGRHSLAGQQRVA*
Ga0120156_10851541	3300011996	Permafrost	MPTLRQTLSLSEQLALAVRCQTPVRLASTFASLEGQFYDRTPFDDLARQVRALYAPDDADLFRSRLDRRLGDRHSAPVAWDAQSPGSSARRRVA*
Ga0120118_10488342	3300012010	Permafrost	SLSEQLALAVRCQTPVSLASTFASLEGQFYDRAPFDNLARQVHALYEPADADLFRSRLDRRLRDRHSAPVDWTVQPATATVRRHAA*
Ga0120118_11649871	3300012010	Permafrost	LAMPPLRETLTLPEQLTLAIRCQTPVRLASTFASLEGQFYDRTPFDNLARQVHALYDSSDADVLRSRLDRRLRDRHSAPVDWTARPPSSPARWRAA*
Ga0120159_11171471	3300012014	Permafrost	CQTPVRLASTFASLEGQFYDRTPFDNLARQVHALYEPADADLFRSRLDRRLRDRHSAPVDWTVQPTTATVRRHAA*
Ga0120159_11307101	3300012014	Permafrost	LALAVRCQTPVRLALTFASLEGQFYDRTPFDDLARQVRALYAPDDADLFRARLDRRLRDRHSAPVAWDAQSPGSTARRRVA*
Ga0137389_103561042	3300012096	Vadose Zone Soil	MPTLRETLTVPEQLACAVRQHTPVQLAHTFAVFEGQFYDRLPFDDLARQVHALYAPDDADLFRTRLDRRLRDRHSAPIAWNTPSPGSVTRRHVA*
Ga0137389_116512391	3300012096	Vadose Zone Soil	LALAIRCQTPVRMAMTFASFEGQFYDRSPFDNLARQVHALYEPTDADVFRTRLDRRLRDRQSAPVDWTVQPATATVRRQAA*
Ga0137388_108812852	3300012189	Vadose Zone Soil	MPTLRETLTVPEQLACAVRQHTPVQLAHTFAAFEGQFYDRLPFDDLARQVHALYAPDDADLFRMRLDRRLRDRHSAPVAWDAPPPGSVARRHVA*
Ga0137388_110810112	3300012189	Vadose Zone Soil	MPTFRQALSLSEQLALAVRCQTPVRLALTFASLEGQFYDRTPFDNLARQVHALYEPTDADVFRTRLDRRLRDRHSAPVDWTVQPATATVRRHAA*
Ga0137388_117109301	3300012189	Vadose Zone Soil	MSTLRETLTVSEQLACAVRQHTPIQLAHTFAAFEGQFYDRLPFDDLARQVHALYAPDDADLFRSRLDRRLRDRHSAPVAWDAPLPASLAGRYVA*
Ga0137364_108691152	3300012198	Vadose Zone Soil	PTLRQTLSLPEQLALAIRCQTPVRLALTFASLEGQFYDRAPFDNLARQVHALYESTDADVFRTRLDRRLRDRHSAPVDWTVQPATATVRRHAA*
Ga0137365_103613612	3300012201	Vadose Zone Soil	AVRCQTPVRLALTFASLEGQFYDRTPFDNLARQVHALYEPTDADVFRTRLDRRLRDRHSAPVDWTVQPATATVRRHAA*
Ga0137365_111109772	3300012201	Vadose Zone Soil	MPTLRQTLSLSEQLALAIRCQTPVRLASTFASLEGQFYARAPFDNLARQVHALYESTDADVFRTRLDRRLRDRHSAPVDWTVQRA
Ga0137363_114292612	3300012202	Vadose Zone Soil	MPTFRQTQSLSEQLALAVRCQTPVRLALTFASLEGQFYDRTPFDNLARHVHALYEPTDADVFRTRLDRRLRDRHSAPVDWTVQPATATARRHAA*
Ga0137374_101778283	3300012204	Vadose Zone Soil	MALFAASERRLAMATLRETLSIPEQLACAVRQHTPIQLAHTFAAFEGQFYDRLPFDDLARQVHALYAQDDADLFRTRLDRRLRDRHSAPVTWAAPSPGSAG
Ga0137374_103099152	3300012204	Vadose Zone Soil	MPTLRETLTVAEQLACAVRQHTPIQLAHTFAAFEGQFYDRLPFDDLARQVHALYAPDDADLFRSRLDRRLRDRHSAPVAWDAASPASIAGRYVA*
Ga0137374_104846482	3300012204	Vadose Zone Soil	MPTLRQTLSLDDQLALAVRCQTPVRLALTFASLEGQFYDRAPFDNLARQVHALYEPTDADVFRTRLDRRLHDRHSAPVDWTVQPATASVRRHAA*
Ga0137374_110739392	3300012204	Vadose Zone Soil	MPTLRQTLSLAEQLALAVRCQSPLRLASTFASLEGQFYDRAPFDNLARQVHALYEPTDADVFRTRLDRRLHDRHSAPVDWTIQPATTAVRRHAA*
Ga0137380_115725622	3300012206	Vadose Zone Soil	MPTLRQTLSLSEQLALAVRCQTPVRLALTFASLEGQFYDRTPFDNLARQVHALYEPTDADVFRTRLDRRLRDRHSAPVDWTVRPATATVRRHAA*
Ga0137381_102271882	3300012207	Vadose Zone Soil	MPTLRETLTVPEQLACAVRQQTPVKLAHTFAAFEGQFYDRLPFDDLARQVHALYAPDDADRFRTRLDRRLRDRHSAPVAWDAPPPGSVARRHIA*
Ga0137381_104770352	3300012207	Vadose Zone Soil	MPTFRQALSLSEQLALAIRCQTPVRLALTFASLEGQFYDRTPFDNLARQVHALYEPTDADVFRTRLDRRLRDRHSAPVDWTVQPATTTVRRHAA*
Ga0137381_108467411	3300012207	Vadose Zone Soil	LSTTEQLAIAVRQQTPVRLAQTFASFEGQFYDRTPFDDLARHVHALYEPADADTFRMRLDRRLRDRHSAPVPWAVGRHTLAGQQRVA*
Ga0137381_117699421	3300012207	Vadose Zone Soil	MPTLRETLSTTEQLTVAVRQHTPVRLAQTFASFEGQFYDRTPFDQLARRVHALYEPADADIFRTRLDRRLRDRHSAPVAWDADCA
Ga0137379_103367182	3300012209	Vadose Zone Soil	MPTLRETLTVPEQLACAVRQHTPVQLAHTFAAFEGQFYDRLPFDDLARQVHALYPPDDADLFRTRLDRRLRDRHSAPVAWDAPPPGSVARRRRHIA*
Ga0137379_116563801	3300012209	Vadose Zone Soil	MPTLRQTLSLSEQLALAVRCQTPVSLASTFASLEGQFYDRAPFDNLARQVHALYEPTEADVFRTRLDRRLRDRHSAPVDWTVRPTASTSRRHAA*
Ga0137378_110132742	3300012210	Vadose Zone Soil	AMPTLRQTLTLSEQLALAIRCQTPVRLASTFASLEGQFYDRAPFDNLARQVHALYEPADADVFRSRLDRRLRDRHSAPVDWTVQPATTAARRHAA*
Ga0137377_112316031	3300012211	Vadose Zone Soil	LSLSEQLALAVRCQTPVRLASTFASLEGQFYDRAPFDNLARQVHALYEPTDADVFRTRLDRRLRDRHSAPVDWTVQPATATVRRHAA*
Ga0137387_105470592	3300012349	Vadose Zone Soil	MPTLRQTLSLSEQLALAVRCQTPVRLALTFASLEGQFYDRTPFDNLARQVHALYEPTDADVFRTRLDRRLRDRHSAPVDWTVQPATTAVRRHAA*
Ga0137387_106328151	3300012349	Vadose Zone Soil	MPTLRETLTVPEQLACAVRQHTPVQLAHTFAVFEGQFYDRLPFDDLARQVHALYAPDDADLFRSRLDRRLRDRHSTPVTWDAPSPGTVARRHVA*
Ga0137372_104451211	3300012350	Vadose Zone Soil	MPTLRETLSTHEQLIMALRQQTPVRLARTFASFEGQFYDRTPFDNLARHVHALYEPADADTFRRRLDRRLRDRHSAPVAWDIDREGLAGQQRAA*
Ga0137372_105287302	3300012350	Vadose Zone Soil	MPTLRQTLSLDDQLALAVRCQTPVRLALTFASLEGQFYDRAPFDNLARQVHALYEPTDADVFRTRLDRRLRDRHSAPVDWTVQPATAMVRRHAA*
Ga0137372_110375322	3300012350	Vadose Zone Soil	MPTLRETLSISEQLACAVRQHTPIQLAYTFAAFEGQFYDRLPYDDLARQVHALYAPDDADLFRGRLDRRLRDRHSAPV
Ga0137372_110793102	3300012350	Vadose Zone Soil	LALAVRCQTPVSLASTFASLEGQFYDRAPFDNLARQVHALYEPADADVFRTRLDRRLRDRHSAPVDWTVQPATAMVRRHAA*
Ga0137367_109071131	3300012353	Vadose Zone Soil	MPTLRQTLSLAEQLALAVRCQSPLRLASTFASLEGQFYDRAPFDNLARQVHALYEPTDADVFRTRLDRRLHDRHSAPVNWTVQPATTAVRRHAA*
Ga0137366_108749402	3300012354	Vadose Zone Soil	MPTFRQALSLSEQLALAVRCQTPVSLALTFASLEGQFYDRTPFDNLARQVHALYEPTDADVFRSRLDRRLRDRHSAPVDWTIQPATTAVRRHAA*
Ga0137369_100775131	3300012355	Vadose Zone Soil	MPTLRETLSISEQLACAVRQHTPIQLAYTFAAFEGQFYDRLPYDDLARQVHALYAPDDADLFRGRLDRRLRDRHSAPVAWNAPSTGAAVRRQIA*
Ga0137369_106162791	3300012355	Vadose Zone Soil	MPTLRQTLSFAEQLTLAVRCQTPVRLALTFASLEGQFYDRAPFDNLARQVHALYEPTDADVFRTRLDRRLRDRHSAPVDWIVQPATTAVRRHAA*
Ga0137384_110877902	3300012357	Vadose Zone Soil	LRETLTVPEQLACAVRQQTPVKLAHTFAAFEGQFYDRLPFDDLARHVHALYAPDDADRFRTRLDRRLRDRHSAPVAWDAPPPGSVARRHVA*
Ga0137368_101270112	3300012358	Vadose Zone Soil	MPTLRQTLSLPEQLALAVRCQSPLRLASTFASLEGQFYDRAPFDNLARQVHALYEPTDADVFRTRLDRRLHDRHSAPVDWTIQPATTAVRRHAA*
Ga0137385_102658311	3300012359	Vadose Zone Soil	MPTLRETLSTTEQLAVAVRQQTPVRLAQTFASFEGQFYDRTPFDDLARHVHALYEPADADTFRMRLDRRLRDRHSAPVPWDVGRHTLAGQQRVA*
Ga0137385_108022581	3300012359	Vadose Zone Soil	MPTLRETLTVPEQLACAVRQHTPVQLAHTFAAFEGQFYDRLPFDDLARQVHALYPPDDADLFRTRLDRRLRDRHSAPVAWDAPPPGSVARRHIA*
Ga0137385_110379982	3300012359	Vadose Zone Soil	TVPEQLACAVRQHTPVQLAHTFAAFEGQFYDRLPFDDLARQVHALYAPDDADRFRTRLDRRLRDRHSEPVAWDATSPGSAARRHVA*
Ga0137375_103558362	3300012360	Vadose Zone Soil	MPTLRETLSIPEQLACAVRQHTPVQLAHTFAAFEGQFYDRVPFDDLARQVHALYAPDDAHLFRTRLDRRLRDRHSEPVAWDATSPGSVARRHVA*
Ga0137361_110663872	3300012362	Vadose Zone Soil	MPTLRQALSLSEQLALAVRCQTPVSLAMTFASLEGQFYDRTPFDNLARQVHALDEPTDADVFRTRLDRRLRDRHSAPVDWTVQPATDTVRRHAA*
Ga0137390_113735382	3300012363	Vadose Zone Soil	LSFPQQLALAVRCQTPIRLASTFAAFEGQFYDRAPFDNLARQVRALYESSDADIFRSRLDRRLRDRHSAPVEWTVPPATPARRDAA*
Ga0137390_119171811	3300012363	Vadose Zone Soil	MPTLRETLTDPEQLACAVRRHTPVQLAHTFAAFEGQFYDRLPFDDLARQVHALYAPDDADLFRTRLDRRLRDRHSAPVVWDAPPPGSAARRNIA*
Ga0137373_101661942	3300012532	Vadose Zone Soil	MALFAASERRLAMPTLRETLSVPEQLACAVRQHTPVQLAHTFAAFEGQFYDRLPFDDLARQVHALYAPDDAHLFRTRLDRRLRDRHSEPVAWDATSPGSVARRHVA*
Ga0137373_104024242	3300012532	Vadose Zone Soil	MPTLRQTLSLDDQLALAVRCQTPVRLALTFASLEGQFYDRTPFDNLARQVHALYEPTDADVFRTRLDRRLRDRHSAPVDWTVQPATATVRRYAA*
Ga0134077_103846101	3300012972	Grasslands Soil	MPTFRQTLSLSEQLALAVRCQTPVSLAITFASLEGQFYDRARFDNLARQVHALYEPTDADVFRSRLDRRLRDRHSAPVDWTVQQATTTARRPAA*
Ga0120154_10668582	3300013501	Permafrost	MPTLRQTLSLSEQLALAVRCQTPVRLASTFASLEGQFYDRAPFDNLARQVHALYEPTEADVFRTRLDRRLRDRHSAPVDWTAQPAKTPPRRHAA*
Ga0120179_10572722	3300013763	Permafrost	MPTLRQTLSLSEQLALAVRCQTPVRLASTFASLEGQFYDRAPFDNLARQVHALYEPADADLFRSRLDRRLRDRHSAPVDWTVQPVTATVRRHAA*
Ga0120172_10880432	3300013765	Permafrost	TLSLSEQLALAVRCQTPVSLASTFASLEGQFYDRAPFDNLARQVHALYEPADADLFRSRLDRRLRDRHSAPVDWTVQPATATVRRHAA*
Ga0132258_127702682	3300015371	Arabidopsis Rhizosphere	MPTFRESLSTHDQLVIAVRQQTPVRLAQMFASFEGQFYDRTPFDNLARHVHTLYEPADADLFRSRLDRRLRDRHSAPVAWDIDPDNLAVEQRVA*
Ga0066662_106340601	3300018468	Grasslands Soil	MPTLRETLSISEQLACAVVQYTPIQLAHTFAAYEGQFYDRLAFDNLARQVNALYAPADADLFRSRLDRRLRDRHSAPVA
Ga0066662_117333131	3300018468	Grasslands Soil	MPTLRETLTVPEQLACAVRQHTPVQLAHTFAAFEGQFYDRLPFDLARQIHALYAPDDADLFRTRLDRRLRDRHSAPVAWDAPPSGSAARRHVA
Ga0066662_126795761	3300018468	Grasslands Soil	MPTLRESLSVPQQLACAVRQHTPIQLAHTFAAFEGQFYDRVPFDELARQVRALYAADEADLFRARLDRRLRDRHSAPVTWDAPVSDPMPRRH
Ga0193751_12107822	3300019888	Soil	MPTFRQTLSLSEQLALAVRCQTPVRLASTFASLEGQFYDRTPFDNLARQVHALYEPTDADVFRTRLDRRLRDRHSAPVDWTVQPATATVRRHAA
Ga0213876_100717302	3300021384	Plant Roots	MPTLRHTLSQAEQLALAVRCQSPLRLASTFASLEGQFYDRAPFDNLARQVHALYEPTDADVFRTRLDRRLRDRHSAPVDWTVQPAASTVRRHAA
Ga0213853_106511482	3300021861	Watersheds	MPTLRQTLSLPEQLAVAVRCQTPARLALTFASLEGQFYDRSPFDDLARQVHALYAPDDADLFRTRLDRRLRDRHSSPVVWDARSPGVVNRRHVA
Ga0213853_107442953	3300021861	Watersheds	MPTLRETLTVPEQLACAVRQHTPVQLAHTFAAFEGQFYDRLPFDDLARQVHALYAPDDADLFRTRLDRRLRDRHSAPVAWDAPPSGSVARRHVA
Ga0213853_113340992	3300021861	Watersheds	AVRCQTPVRLASTFASLEGQFYDRAPFDNLARQVHALYEPTEADVFRTRLDRRLRDRHSAPVDWTVQPAKAPTRRHAA
Ga0207646_104462512	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MPTLRQTLSLSEQLALAIRCQTPVRLASTFASLEGQFYDRAPFDNLARQVHALYEPTDADVFRTRLDCRLRDRHSAPVDWTVQPAAATVRRHAA
Ga0209166_100832133	3300027857	Surface Soil	MPTLRQTLSLPEQLALAVRCQTPVRLASTFASFEGQFYDRTPFDNLARQVHALYETCDADVFRTRLDRRLRDRHSAPVDWTVQPATTAVRRHAA
Ga0209166_101443763	3300027857	Surface Soil	MPTLRQTLSLSEQLALAVRCKTPVRLASTFASLEGQFYDRTPFDNLARQVHALYEPTDADVFRTRLDRRLRDRHSAPVDWTVQPATATVRRHAA
Ga0209166_102708752	3300027857	Surface Soil	MPTLRQTLSLSEQLALAIRCQTPVRLASTFASLEGQFYDRTPFDNLARQVHALYEPSDADVFRTRLDRRLRDRNSAPVDWTVQPATAPVRRHAA
Ga0209166_103469172	3300027857	Surface Soil	MPTLRQTLSLSEQLALAIRCQTPVRLAATFASFEGQFYDRTPFDNLARQVHALYETSDADVFRTRLDRRLRDRHSAPVDWTVQPATTAVRRHAA
Ga0209701_105043042	3300027862	Vadose Zone Soil	MPTFRQALSLSEQLALAVRCQTPVSLAMMFASLEGQFYDRTPFDNLARQVHALYEPTDADVFRTRLDRRLRDRHSAPVDWTVQLATATVRRHAA
Ga0209283_107250892	3300027875	Vadose Zone Soil	MPTLRQTLSLSEQLALAVRCQTPVSLASTFASLEGQFYDRAPFDNLARQVHALYEPADADLFRSRLDRRLRDRHSAPVDWTVQPAAATARRHAA
Ga0209283_109759611	3300027875	Vadose Zone Soil	MPTLRETLTVPEQLACAVRQHTPVQLAHTFAAFEGQFYDRLPFDDLARQVHALYAPDDADLFRTRLDRRLRDRHSAPIAWNTPSPGS
Ga0209590_102807442	3300027882	Vadose Zone Soil	SLSDQLTLAVRCQTPVRMALTFASLEGQFYDRTPFDNLARQVHALYEPTDADVFRTRLDRRLRDRHSAPVDWTVQPATATVRRHAA
Ga0209488_110547272	3300027903	Vadose Zone Soil	MPTLRQTLSLSEQLALAVRCQTPVRLASTFASLEGQFYDRTPFDNLARQVHALYEPTDADVFRTRLDRRLRDRHSAPVDWIVQPATTAVRRHAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098786

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences