NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F099118

Metagenome / Metatranscriptome Family F099118

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099118
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 53 residues
Representative Sequence MSQEYYDHLNNGEKYTCDKCQTATLGAHEYDQYIKFQYHYCEPCWNYIHLKKG
Number of Associated Samples 75
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 86.41 %
% of genes near scaffold ends (potentially truncated) 98.06 %
% of genes from short scaffolds (< 2000 bps) 80.58 %
Associated GOLD sequencing projects 70
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (66.019 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(31.068 % of family members)
Environment Ontology (ENVO) Unclassified
(80.583 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(68.932 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 22.22%    β-sheet: 16.05%    Coil/Unstructured: 61.73%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.45
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF13385Laminin_G_3 17.48



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A66.02 %
All OrganismsrootAll Organisms33.98 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000257|LP_F_10_SI03_100DRAFT_1007811All Organisms → Viruses → Predicted Viral2376Open in IMG/M
3300000257|LP_F_10_SI03_100DRAFT_1018108All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon1271Open in IMG/M
3300001683|GBIDBA_10014027All Organisms → Viruses → Predicted Viral4175Open in IMG/M
3300001683|GBIDBA_10024185All Organisms → cellular organisms → Bacteria → Proteobacteria6322Open in IMG/M
3300001683|GBIDBA_10060035All Organisms → Viruses → Predicted Viral1365Open in IMG/M
3300002231|KVRMV2_101507041Not Available752Open in IMG/M
3300002242|KVWGV2_10813392Not Available825Open in IMG/M
3300002514|JGI25133J35611_10011233All Organisms → Viruses → Predicted Viral3883Open in IMG/M
3300002913|JGI26060J43896_10051035Not Available1166Open in IMG/M
3300003153|Ga0052192_1110225Not Available715Open in IMG/M
3300003498|JGI26239J51126_1094753All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon517Open in IMG/M
3300003602|JGI26262J51727_1089115Not Available619Open in IMG/M
3300004110|Ga0008648_10022707All Organisms → Viruses → Predicted Viral1893Open in IMG/M
3300005399|Ga0066860_10122616Not Available912Open in IMG/M
3300005605|Ga0066850_10219227Not Available684Open in IMG/M
3300005969|Ga0066369_10060784Not Available1324Open in IMG/M
3300006738|Ga0098035_1212737Not Available643Open in IMG/M
3300006793|Ga0098055_1027018All Organisms → Viruses → Predicted Viral2400Open in IMG/M
3300006793|Ga0098055_1184344Not Available796Open in IMG/M
3300006802|Ga0070749_10059041Not Available2318Open in IMG/M
3300006802|Ga0070749_10060244All Organisms → Viruses → environmental samples → uncultured marine virus2292Open in IMG/M
3300006802|Ga0070749_10445842Not Available710Open in IMG/M
3300006802|Ga0070749_10673999Not Available554Open in IMG/M
3300006916|Ga0070750_10013273All Organisms → Viruses → Predicted Viral4296Open in IMG/M
3300006919|Ga0070746_10234260Not Available863Open in IMG/M
3300006921|Ga0098060_1017350All Organisms → Viruses → Predicted Viral2268Open in IMG/M
3300006921|Ga0098060_1079540Not Available941Open in IMG/M
3300006921|Ga0098060_1099362Not Available825Open in IMG/M
3300006921|Ga0098060_1107873Not Available786Open in IMG/M
3300007234|Ga0075460_10146966Not Available823Open in IMG/M
3300007276|Ga0070747_1019762All Organisms → Viruses → Predicted Viral2756Open in IMG/M
3300007276|Ga0070747_1074808All Organisms → Viruses → Predicted Viral1269Open in IMG/M
3300007538|Ga0099851_1174543Not Available792Open in IMG/M
3300007665|Ga0102908_1106084Not Available569Open in IMG/M
3300008470|Ga0115371_11107370Not Available586Open in IMG/M
3300009052|Ga0102886_1095831Not Available904Open in IMG/M
3300009420|Ga0114994_10207596Not Available1317Open in IMG/M
3300009420|Ga0114994_10838376Not Available597Open in IMG/M
3300009497|Ga0115569_10492842Not Available518Open in IMG/M
3300009498|Ga0115568_10253028Not Available792Open in IMG/M
3300009786|Ga0114999_10159180All Organisms → Viruses → Predicted Viral1904Open in IMG/M
3300009786|Ga0114999_10461965Not Available987Open in IMG/M
3300010150|Ga0098056_1085930All Organisms → Viruses → Thaspiviridae → Nitmarvirus → Nitmarvirus NSV11075Open in IMG/M
3300010153|Ga0098059_1077144Not Available1330Open in IMG/M
3300010153|Ga0098059_1095004All Organisms → cellular organisms → Bacteria1185Open in IMG/M
3300010153|Ga0098059_1100513Not Available1149Open in IMG/M
3300010153|Ga0098059_1162943Not Available876Open in IMG/M
3300010299|Ga0129342_1016893All Organisms → Viruses → Predicted Viral3013Open in IMG/M
3300010318|Ga0136656_1020398All Organisms → Viruses → Predicted Viral2410Open in IMG/M
3300010883|Ga0133547_10328420All Organisms → Viruses → Predicted Viral3160Open in IMG/M
3300010883|Ga0133547_11077712Not Available1547Open in IMG/M
3300010883|Ga0133547_12071227Not Available1039Open in IMG/M
3300018418|Ga0181567_10968535Not Available532Open in IMG/M
3300020200|Ga0194121_10365604Not Available720Open in IMG/M
3300020214|Ga0194132_10494197Not Available605Open in IMG/M
3300020220|Ga0194119_10617921Not Available665Open in IMG/M
3300020220|Ga0194119_10783565Not Available566Open in IMG/M
3300020221|Ga0194127_10415147Not Available886Open in IMG/M
3300020431|Ga0211554_10070705Not Available1843Open in IMG/M
3300020603|Ga0194126_10469740Not Available783Open in IMG/M
3300021087|Ga0206683_10657057Not Available503Open in IMG/M
3300022176|Ga0212031_1005531All Organisms → Viruses → Predicted Viral1609Open in IMG/M
3300022198|Ga0196905_1008940All Organisms → Viruses → Predicted Viral3376Open in IMG/M
3300022200|Ga0196901_1048242All Organisms → Viruses → Predicted Viral1598Open in IMG/M
3300022200|Ga0196901_1176976Not Available696Open in IMG/M
(restricted) 3300022931|Ga0233433_10191799Not Available902Open in IMG/M
(restricted) 3300024062|Ga0255039_10299343All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon686Open in IMG/M
(restricted) 3300024261|Ga0233439_10022210All Organisms → Viruses → Predicted Viral4243Open in IMG/M
(restricted) 3300024261|Ga0233439_10091258All Organisms → Viruses → Predicted Viral1586Open in IMG/M
(restricted) 3300024327|Ga0233434_1200361Not Available730Open in IMG/M
3300025099|Ga0208669_1029211Not Available1358Open in IMG/M
3300025099|Ga0208669_1093229Not Available635Open in IMG/M
3300025103|Ga0208013_1066940Not Available946Open in IMG/M
3300025128|Ga0208919_1089243Not Available1002Open in IMG/M
3300025662|Ga0209664_1106260Not Available799Open in IMG/M
3300025667|Ga0209043_1020441All Organisms → Viruses → Predicted Viral2370Open in IMG/M
3300025667|Ga0209043_1049822Not Available1261Open in IMG/M
3300025687|Ga0208019_1007165All Organisms → Viruses → Predicted Viral4999Open in IMG/M
3300025687|Ga0208019_1061371Not Available1259Open in IMG/M
3300025709|Ga0209044_1047901All Organisms → Viruses → Predicted Viral1451Open in IMG/M
3300025759|Ga0208899_1089990All Organisms → Viruses → Predicted Viral1172Open in IMG/M
3300025769|Ga0208767_1013886All Organisms → Viruses → Predicted Viral4780Open in IMG/M
3300026079|Ga0208748_1158033Not Available532Open in IMG/M
3300026103|Ga0208451_1004417All Organisms → Viruses → Predicted Viral1312Open in IMG/M
3300026103|Ga0208451_1048910Not Available528Open in IMG/M
3300026256|Ga0208639_1095028Not Available741Open in IMG/M
3300027668|Ga0209482_1166957Not Available635Open in IMG/M
3300027779|Ga0209709_10042851Not Available2684Open in IMG/M
3300027779|Ga0209709_10276095Not Available729Open in IMG/M
(restricted) 3300027837|Ga0255041_10217905Not Available675Open in IMG/M
3300031143|Ga0308025_1095762Not Available1095Open in IMG/M
3300031598|Ga0308019_10050122All Organisms → Viruses → Predicted Viral1788Open in IMG/M
3300031598|Ga0308019_10132878Not Available997Open in IMG/M
3300031598|Ga0308019_10229183Not Available710Open in IMG/M
3300031612|Ga0308009_10278568Not Available619Open in IMG/M
3300031628|Ga0308014_1070686Not Available836Open in IMG/M
3300031655|Ga0308018_10296794Not Available537Open in IMG/M
3300031687|Ga0308008_1009913All Organisms → Viruses → Predicted Viral2531Open in IMG/M
3300031688|Ga0308011_10173094Not Available652Open in IMG/M
3300031774|Ga0315331_11031302Not Available558Open in IMG/M
3300032032|Ga0315327_10285451Not Available1036Open in IMG/M
3300032073|Ga0315315_10275635Not Available1568Open in IMG/M
3300032277|Ga0316202_10169698All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon1013Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine31.07%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous17.48%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine8.74%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine6.80%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake5.83%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater3.88%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater3.88%
Hydrothermal Vent PlumeEnvironmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume2.91%
Marine OceanicEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic1.94%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine1.94%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.94%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine1.94%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.94%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine1.94%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment1.94%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater1.94%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat0.97%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh0.97%
MarineEnvironmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine0.97%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment0.97%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000257Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_F_10_SI03_100EnvironmentalOpen in IMG/M
3300001683Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assemblyEnvironmentalOpen in IMG/M
3300002231Marine sediment microbial communities from Santorini caldera mats, Greece - red matEnvironmentalOpen in IMG/M
3300002242Marine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey matEnvironmentalOpen in IMG/M
3300002514Marine viral communities from the Pacific Ocean - ETNP_6_85EnvironmentalOpen in IMG/M
3300002913Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LVEnvironmentalOpen in IMG/M
3300003153Marine microbial communities from deep-sea hydrothermal vent plumes in the Guaymas BasinEnvironmentalOpen in IMG/M
3300003498Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_130m_DNAEnvironmentalOpen in IMG/M
3300003602Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_150m_DNAEnvironmentalOpen in IMG/M
3300004110Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_100m_DNAEnvironmentalOpen in IMG/M
3300005399Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F14-07SV275EnvironmentalOpen in IMG/M
3300005605Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV67EnvironmentalOpen in IMG/M
3300005969Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_Bottom_ad_4513_LV_AEnvironmentalOpen in IMG/M
3300006738Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300006921Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaGEnvironmentalOpen in IMG/M
3300007234Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNAEnvironmentalOpen in IMG/M
3300007276Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31EnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007665Estuarine microbial communities from the Columbia River estuary - metaG 1557A-3EnvironmentalOpen in IMG/M
3300008470Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563EnvironmentalOpen in IMG/M
3300009052Estuarine microbial communities from the Columbia River estuary - metaG 1550A-02EnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009497Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503EnvironmentalOpen in IMG/M
3300009498Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426EnvironmentalOpen in IMG/M
3300009786Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126EnvironmentalOpen in IMG/M
3300010150Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaGEnvironmentalOpen in IMG/M
3300010153Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaGEnvironmentalOpen in IMG/M
3300010299Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNAEnvironmentalOpen in IMG/M
3300010318Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_DNAEnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300018418Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020200Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015020 Mahale Deep Cast 50mEnvironmentalOpen in IMG/M
3300020214Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015054 Kigoma Offshore 80mEnvironmentalOpen in IMG/M
3300020220Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015018 Mahale Deep Cast 100mEnvironmentalOpen in IMG/M
3300020221Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015036 Kigoma Deep Cast 100mEnvironmentalOpen in IMG/M
3300020431Marine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)EnvironmentalOpen in IMG/M
3300020603Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015035 Kigoma Deep Cast 150mEnvironmentalOpen in IMG/M
3300021087Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015EnvironmentalOpen in IMG/M
3300022176Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022198Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022200Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022931 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MGEnvironmentalOpen in IMG/M
3300024062 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1EnvironmentalOpen in IMG/M
3300024261 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MGEnvironmentalOpen in IMG/M
3300024327 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_120_MGEnvironmentalOpen in IMG/M
3300025099Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025103Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025128Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025662Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_150m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025667Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025687Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025709Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_130m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025759Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300026079Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_Bottom_ad_4513_LV_A (SPAdes)EnvironmentalOpen in IMG/M
3300026103Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155 (SPAdes)EnvironmentalOpen in IMG/M
3300026256Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV76 (SPAdes)EnvironmentalOpen in IMG/M
3300027668Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027779Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)EnvironmentalOpen in IMG/M
3300027837 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_3EnvironmentalOpen in IMG/M
3300031143Marine microbial communities from water near the shore, Antarctic Ocean - #422EnvironmentalOpen in IMG/M
3300031598Marine microbial communities from water near the shore, Antarctic Ocean - #284EnvironmentalOpen in IMG/M
3300031612Marine microbial communities from water near the shore, Antarctic Ocean - #127EnvironmentalOpen in IMG/M
3300031628Marine microbial communities from water near the shore, Antarctic Ocean - #229EnvironmentalOpen in IMG/M
3300031655Marine microbial communities from water near the shore, Antarctic Ocean - #282EnvironmentalOpen in IMG/M
3300031687Marine microbial communities from water near the shore, Antarctic Ocean - #125EnvironmentalOpen in IMG/M
3300031688Marine microbial communities from water near the shore, Antarctic Ocean - #177EnvironmentalOpen in IMG/M
3300031774Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915EnvironmentalOpen in IMG/M
3300032032Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 32315EnvironmentalOpen in IMG/M
3300032073Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416EnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
LP_F_10_SI03_100DRAFT_100781113300000257MarineMSQEYYDHLNAGETYTCDKCKTAELGAHEYDQYIVMQYHYCEPCWNYVHLKKGTCDKCGSSMTN
LP_F_10_SI03_100DRAFT_101810813300000257MarineLSQEYYDHLNEGEKYFCDKCQVATLGAHEYEQYIVMQYHYCEPCWNY
GBIDBA_1001402753300001683Hydrothermal Vent PlumeMGINMSQEYYDHLNEGEKYSCDKCKVVNLSATEYDSYIVNQYHYCEPCW
GBIDBA_1002418513300001683Hydrothermal Vent PlumeMSQEYYDHLNEGDKYSCDKCKVVNLSATEYDSYIVNQYHYCEPCW
GBIDBA_1006003513300001683Hydrothermal Vent PlumeLEWSDFATMSQEYYDHLNEGDKYSCDKCQVVNLSAIEYDSYIIMQYHYCEG
KVRMV2_10150704123300002231Marine SedimentMSQEYYDHLNNGETYTCDRCQTATLGAHEYDQYIKFQYHYCEPCWNYMRLKKGTCTCGIVMTNRSE
KVWGV2_1081339223300002242Marine SedimentLSQEYYDHLNAGEKYTCDKCQTATLGAHEYDQYIKFQYHYCEPC
JGI25133J35611_1001123313300002514MarineMSQEYYDHLNEGEKYSCDKCGVVNLSANEYDNYIIMQYHYCEPCWNYVHLKKGTCECGNSMTKETSMLVSL*
JGI26060J43896_1005103523300002913MarineMSQEYYDHLNAGEKYTCDKCQTATLGAHEYDQYIRFQYHYCDLCWNYIHLKKGTCDSCGSSM
Ga0052192_111022523300003153MarineMSQEFKDHVKLGEEYTCDKCNETKLDANEFDQYIVNHYHYCEPCWNYVHLKKGTCDSCGSKMTNRNE*
JGI26239J51126_109475313300003498MarineLSQEYYDHLNAGEKYTCDKCQVATLGAHEYEQYIVMQYHYCE
JGI26262J51727_108911513300003602MarineMSQEFKDHADAGEQYTCDKCNDTILCAEEYDSYIKFQYHYCEPCWNYMRLKKGT
Ga0008648_1002270713300004110MarineMSQEFKDHVKLGEEYTCDKCNETKLDANEFDQYIIMQYHYCEPCWNYVHLKKGTC
Ga0066860_1012261613300005399MarineMSQEYYDHLNEGEKYACDKCDVVNLSATEYDSYIIMQYHYCESCWNYVHLKKGTC
Ga0066850_1021922723300005605MarineMSQEYYDHLNEGETYTCDKCNVASLSPHEYDNYIIMNYHYCEPCWNYTHLK
Ga0066369_1006078443300005969MarineMSQEYYTHLNEGEKYSCDKCKVANLSANEYDQYIKFQ
Ga0098035_121273723300006738MarineMSQEYYNHLNEGEKYSCDKCGVVNLSANEYDNYIIMQYHYCEPCWNYVHLKKGTCE
Ga0098055_102701813300006793MarineLSQEYYDHLNNGETYTCDKCKTAELGPNEYDQYIKFQYHYCEPCWNYMKLKKGTC
Ga0098055_118434423300006793MarineLSQEYYDHLNEGEKYTCDKCKTAELGAHEYDQYIKFQYHYCEPCWNYMRLKKG
Ga0070749_1005904123300006802AqueousMSQEYYDHLNEGEKYLCDKCQTAELSAHEYDQYIRFQYHY
Ga0070749_1006024413300006802AqueousMSQEYYDHLNEGETYVCDKCNVAELSAHEYDQYIRFQYHYCEP
Ga0070749_1044584223300006802AqueousMSQEYYDHLNEGEKYTCDKCNVAELSAHEYDQYIRFQYHYCEPCWNYIHLKKGKCESCGADYS
Ga0070749_1067399913300006802AqueousMSQEYYDHLNEGEKYTCDKCNVAELSAHDYDQYIRFQYHYCEPCWNYI
Ga0070750_1001327343300006916AqueousMSQEYYDHLNEGDKYLCDKCQTAELSAHEYDQYIRFQYHYCEPCWNYLHLKKGKCESCGA
Ga0070746_1023426023300006919AqueousMSQEYYDHLNEGEKYLCDKCQTAELSAHEYDQYIRF
Ga0098060_101735033300006921MarineMSQEYYDHLNAGEKYTCDKCQTATLGAHEYDQYIKFQYHYCEPCWNYMKL
Ga0098060_107954023300006921MarineMSQEYYDHLNAGEKYTCDKCQTATLGAHEYDQYIKFQYHYCEPCWNYMKLKKGTCDS
Ga0098060_109936223300006921MarineMSQEYYDHLNAGEKYTCDKCKTAELGAHEYDQYIKFQYHYCEPCWNYMKL
Ga0098060_110787313300006921MarineMSQEYYDHLNAGEKYTCDKCKTAELGAYEYDQYIKFQYHYCDPC
Ga0075460_1014696623300007234AqueousMSQEYYDHLNEGETYVCDKCNVAELSAHEYDQYIRFQYHYCEPCWNYLHLKKGKCESCGA
Ga0070747_101976233300007276AqueousMSQEYYDHLNAGEKYTCDKCQTATLGAHEYDQYIRFQY
Ga0070747_107480813300007276AqueousMSQEYYDHLNAGEEYTCDKCQTATLGAHEYDQYIRFQYHYCEPCWNYIHLKKGTCDSCGSTMTNRSET
Ga0099851_117454323300007538AqueousMVNMSQEYYDHLNEGEKYLCDKCQTAELSAHEYDQY
Ga0102908_110608423300007665EstuarineMSQEFKDHADAGEQYTCDKCNDTILYAEEYDQYIKFQYHYCEPCWNYMHLKKGTCGQCGS
Ga0115371_1110737023300008470SedimentMSQEFQTHVDAGEEYSCDKCETAILSSDEYDQYIKFQYHYCEPCWNYIHLKKGTCDSC
Ga0102886_109583123300009052EstuarineMSQEFKDHADAGEQYTCDKCNDTILCADEYDQYIRFQYHYCESCWNYIHLKKGTCDSCGSTMTNR
Ga0114994_1020759623300009420MarineMSQEFKDHAEAGEEYTCDKCNDTILSPDEYDQYIKFQYHYCEPCWNYMHLKKGTCDSCGSTMTNRSEKS
Ga0114994_1083837613300009420MarineMMSQEFKDHAEAGEEYTCDKCDTSILSPDEYDQYIKFQYHYCEPCWNYMHLK
Ga0115569_1049284213300009497Pelagic MarineLSQEYYDHLNAGEEYTCDKCKTVTLGAHEYDQYIRFQYHYCEPCWNY
Ga0115568_1025302813300009498Pelagic MarineLSQEYYDHLNAGEEYTCDKCKTVTLGAHEYDQYIRFQYHYCEPCWNYMR
Ga0114999_1015918013300009786MarineLSQEFKDHAEAGEEYTCDKCDIMILSPDEYDQYIKFQYHYCEPCWNYMHLKKGTCDSC
Ga0114999_1046196523300009786MarineMSQEFKDHAEAGEEYTCDKCDTSILSPDEYDQYIKFQYHYCEPCWNYMRLKKGICTC
Ga0098056_108593023300010150MarineMSQEYYDHLNAGEKYTCDKCKTAELGAHEYDQYIKFQYHYCEPCWNYMK
Ga0098059_107714413300010153MarineMSQEYYDHLNAGEKYFCDKCQVATLGAHEYEQYIVMQYHYC
Ga0098059_109500423300010153MarineMSQEYYDHLNAGEKYTCDKCQTATLGAHEYDQYIKFQYHYCEPCWNYMKLKKGTCDSCGS
Ga0098059_110051313300010153MarineMSQEYYDHLNEGEKYSCDKCGVVNLSANEYDNHIIMQYHYCEPCWNYTHLKKGTCECGNTMTNRNE
Ga0098059_116294313300010153MarineMSQEYYDHLNAGEKYFCDKCQVATLGAHEYEQYIVMQYHY
Ga0129342_101689323300010299Freshwater To Marine Saline GradientMSQEYYDHLNEGDKYLCDKCQTAELSAHEYDQYIRFQYHYCEPCWNYLHLKKGK
Ga0136656_102039823300010318Freshwater To Marine Saline GradientMSQEYYDHLNEGDKYLCDKCQTAELSAHEYDQYIRFQYHY
Ga0133547_1032842043300010883MarineMSQEFKDHVKLGEEYTCDKCNETKLDANEFEQYIIMQYHYCKPCWNYVHLKKG
Ga0133547_1107771223300010883MarineMSQEFKDHAEAGEEYTCDKCNDTILCAEEYDQYIKFQYHYCEPCWNYMRLKK
Ga0133547_1207122723300010883MarineMSQEFKDHAEAGEEYTCDKCDVSILSPDEYDQYIKFQYHYCEPCWNYMHLKKGTCDSCGS
Ga0181567_1096853513300018418Salt MarshMSQEYYDHLNEGEKYLCDKCNVAELSAHDYDQYIRFQYHYCEPCWNYLHLKKGKCESCGATHTNRN
Ga0194121_1036560413300020200Freshwater LakeMIQEYYDHINNGEKYTCDKCGLVNLSAHEYTQFIQYQYHYCEP
Ga0194132_1049419713300020214Freshwater LakeMLQEYYDRINNGEKYTCDKCGLVNLSAHEYTQFIQYQYHYCEPCWNYVHLKQGTCS
Ga0194119_1061792113300020220Freshwater LakeMIQEYYDRINNGEKYTCDKCGLVNLSAHEYTQFIQYQYHYCEPCWNY
Ga0194119_1078356523300020220Freshwater LakeMIQEYYDRINNGEKYTCDKCGLVNLSAHEYTQFIQYQYHYCEP
Ga0194127_1041514713300020221Freshwater LakeMIQEYYDRINNGEKYTCDKCGLVNLSAHEYTQFIQYQ
Ga0211554_1007070513300020431MarineMSQEYYDHLNAGEEYTCDKCQTATLGDYEYDQYIKFQYHYCEPCWNYMRLKKGTCDSCGSTMTNRSEIPS
Ga0194126_1046974013300020603Freshwater LakeMIQEYYDRINNGEKYTCDKCGLVNLSAHEYTQFIQYQYHYCEPCWNYLHLKQG
Ga0206683_1065705723300021087SeawaterLSQEFKDHVEQGEEYTCDKCDKTKLDANEYDQYIIMQYHYCEPCWNYVHLKKGTCDKC
Ga0212031_100553113300022176AqueousMSQEYYDHLNEGDKYLCDKCQTAELSAHEYDQYIRFQYHYCEPCWN
Ga0196905_100894013300022198AqueousMSQEYYDHLNEGDKYLCDKCQTAELSAHEYDQYIRFQYHYCEPCWNYLHLKKGKC
Ga0196901_104824223300022200AqueousMSQEYYDHLNEGDKYLCDKCQTAELSAHEYDQYIRFQYHYCE
Ga0196901_117697613300022200AqueousMFKLRVRLKMVNMSQEYYDHLNEGEKYLCDKCQTAELSAHEYDQYIRFQY
(restricted) Ga0233433_1019179913300022931SeawaterMSQEFKDHADAGEQYTCDKCNDTILCAEEYDQYIKFQYHYCEPCWNYMHLKKGTCGQCGSTMTNRSE
(restricted) Ga0255039_1029934313300024062SeawaterMSQEYYDHLNNGEKYTCDKCQTATLGAHEYDQYIKFQYHYCEPCWNYIHLKKG
(restricted) Ga0233439_1002221073300024261SeawaterMSQEFKDHADAGEQYTCDKCNDTILCAEEYDQYIKFQYHYCEPCWNYMHLKKGTCGQCGSTMT
(restricted) Ga0233439_1009125823300024261SeawaterMSQEFKDHAEAGEEYTCDKCDTSILSADEYDQYIKFQYHYCEPCWNYMHLKKGTCGQCGSTMTNRSE
(restricted) Ga0233434_120036113300024327SeawaterMSQEYYDHLNEGETYTCDKCQVATLGAHEYEQYIKFQYHYCEPCWNYMHLKKGTCDSCG
Ga0208669_102921113300025099MarineMSQEYYDHLNAGEKYTCDKCKTAELGAHEYDQYIKFQYHYCEPCWNYMKLKK
Ga0208669_109322923300025099MarineMSQEYYDHLNAGEKYTCDKCKTAELGAYEYDQYIK
Ga0208013_106694013300025103MarineLSQEYYDHLNAGEKYTCDKCKTAELGAYEYDQYIKFQYHYCEPCWNYMKLKK
Ga0208919_108924313300025128MarineMSQEYYDHLNAGEKYTCDKCQTATLGAHEYDQYIKFQYHYCEPCWN
Ga0209664_110626023300025662MarineMSQEFKDHADAGEEYTCDKCNDTILCAEEYDSYIKFQYHYCEPCWNYMRLKKGT
Ga0209043_102044113300025667MarineMSQEYYDHLNEGEKYFCDKCQVATLGAHEYEQYIKFQYHYCEP
Ga0209043_104982213300025667MarineMSQEFKDHADAGEQYTCDKCNDTILCAEEYDSYIKFQYHYCEPCWNYMRLKKGICT
Ga0208019_100716513300025687AqueousMSQEYYDHLNEGEKYLCDKCQTAELSAHEYDQYIRFQYHYCEPC
Ga0208019_106137113300025687AqueousMFKLRVRLKMVNMSQEYYDHLNEGEKYLCDKCQTAELSAHEYDQYIRFQYHY
Ga0209044_104790113300025709MarineMSQEYYDHLNEGEKYFCDKCQVATLGAHEYEQYIKFQYHYCE
Ga0208899_108999013300025759AqueousMSQEYYDHLNEGEKYLCDKCQTAELSAHEYDQYIRFQY
Ga0208767_101388653300025769AqueousMSQEYYDHLNEGEKYLCDKCQTAELSAHEYDQYIRFQYHYCEPCWNYLHLKKGKCKSCGA
Ga0208748_115803313300026079MarineMSQEYYTHLNEGEKYSCDKCKVANLSANEYDQYIKFQYHYCEL
Ga0208451_100441713300026103Marine OceanicMSQEYYTHLNEGEKYSCDKCKVANLSANEYDQYIKFQYHYCEPCWNYIH
Ga0208451_104891023300026103Marine OceanicMKGITMSQEYYTHLNEGEKYSCDKCKVANLSANEYDQYIKFQYHYCE
Ga0208639_109502823300026256MarineMSQEYYDHLNDGETYTCDKCNVASLSPHEYDNYIIMNYHYCEPCWNYTHLKKGTCECGNSMT
Ga0209482_116695723300027668MarineMSLEFETHTDAGEQYTCDKCDVTILSPDEFDQYIKFQYHYCEPCWNYMHLK
Ga0209709_1004285113300027779MarineMSQEFKDHAEAGEEYTCDKCDVSILSPDEYDQYIKFQYHYCEPCWNYIHLKKG
Ga0209709_1027609523300027779MarineMSQEFKDHAEAGEEYTCDKCNEMILSPDEYDQYIKFQYHYCEPCWNYMHLKKGTCD
(restricted) Ga0255041_1021790523300027837SeawaterMSQEFKDHAEAGEEYTCDKCNDTILCADEYDQYIRFQYHYCESCWNYIHLKKGTC
Ga0308025_109576213300031143MarineMESIMSLKSIVNQEFETHTDAGEQYTCDKCDVAILSPDEFDQYIKFQYHYCEPCWNYMHLKKGTCTCG
Ga0308019_1005012213300031598MarineMESKMSQEFKDHVKMGEEYSCDKCETAILSSDEYDQYIKFQYHYCEPCWNYIHLKKGTCDICG
Ga0308019_1013287813300031598MarineMSLEFETHTDAGEQYTCDKCDVTILSPDEFDQYIKFQYHYCEPCWNYMHLKKGTCT
Ga0308019_1022918313300031598MarineMSLEFETHTDTGEEYTCDKCETAILGPDEYDSNIKFQYHYCEPCWNYIHLKKGTCGQ
Ga0308009_1027856823300031612MarineMSQEFKDHVKMGEEYTCDKCNTSILSSDEYDQYIKFQYHYCEPCWNYMHLKKGTCDSCGSSMT
Ga0308014_107068613300031628MarineMSQEFKDHMKAGEEYTCDKCQEKKLNSNEYDQYIRFQYHYCAPCWNYIHLKKGT
Ga0308018_1029679423300031655MarineLSQEFKDHVEAGEEYICDKCQEKKLNSNEYDQYIRFQYHYCEPCWNYTHLKKGTCDSCGSTMTNR
Ga0308008_100991313300031687MarineMSLEFETHTDAGEQYTCDKCDVAILSPDEFDQYIKFQYHYCEPCWNYMHLKKGTCDSCGS
Ga0308011_1017309413300031688MarineMESKMSQEFKDHVKMGEEYSCDKCETAILSSDEYDQYIKFQYHYCEPCWNYIHLKKGTCDICGSTMTNRSE
Ga0315331_1103130223300031774SeawaterMSQEYYDHLNNGEKYTCDKCQTATLGAHEYDQYIKFQYHYCEPCWNYMKLKKGTC
Ga0315327_1028545113300032032SeawaterMSQEFKDHVKLGEEYTCDKCQVATLGAHEYEQYIVMKYHYCEPCWNYI
Ga0315315_1027563523300032073SeawaterMSQEYYDHLNNGEKYTCDKCQTATLGAHEYDQYIKFQYHY
Ga0316202_1016969813300032277Microbial MatMSQEYYDHLNAGEKYTCDKCQTATLGAHEYDQYIRFQYHYCEPCWNYIHLKKGTCDSC


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