NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F099202

Metagenome / Metatranscriptome Family F099202

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099202
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 54 residues
Representative Sequence MEEFLNALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAELLTEDGEEATA
Number of Associated Samples 82
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 39.81 %
% of genes from short scaffolds (< 2000 bps) 82.52 %
Associated GOLD sequencing projects 76
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (80.583 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(30.097 % of family members)
Environment Ontology (ENVO) Unclassified
(61.165 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(78.641 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 81.13%    β-sheet: 0.00%    Coil/Unstructured: 18.87%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF13264DUF4055 12.62
PF03237Terminase_6N 7.77
PF04233Phage_Mu_F 2.91
PF12684DUF3799 0.97
PF01555N6_N4_Mtase 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG0863DNA modification methylaseReplication, recombination and repair [L] 0.97
COG1041tRNA G10 N-methylase Trm11Translation, ribosomal structure and biogenesis [J] 0.97
COG2189Adenine specific DNA methylase ModReplication, recombination and repair [L] 0.97


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A80.58 %
All OrganismsrootAll Organisms19.42 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000115|DelMOSum2011_c10116488Not Available844Open in IMG/M
3300000116|DelMOSpr2010_c10009600All Organisms → cellular organisms → Bacteria5079Open in IMG/M
3300000116|DelMOSpr2010_c10038381Not Available2180Open in IMG/M
3300000116|DelMOSpr2010_c10088387Not Available1204Open in IMG/M
3300000116|DelMOSpr2010_c10155124Not Available779Open in IMG/M
3300000116|DelMOSpr2010_c10198253Not Available645Open in IMG/M
3300000116|DelMOSpr2010_c10225267Not Available585Open in IMG/M
3300000117|DelMOWin2010_c10030967Not Available2609Open in IMG/M
3300000117|DelMOWin2010_c10035013Not Available2391Open in IMG/M
3300001963|GOS2229_1039731Not Available1730Open in IMG/M
3300001963|GOS2229_1055433Not Available892Open in IMG/M
3300004829|Ga0068515_102104Not Available2550Open in IMG/M
3300005239|Ga0073579_1190682Not Available43526Open in IMG/M
3300006027|Ga0075462_10218762Not Available569Open in IMG/M
3300006027|Ga0075462_10254771Not Available519Open in IMG/M
3300006637|Ga0075461_10155251Not Available700Open in IMG/M
3300006789|Ga0098054_1097438Not Available1102Open in IMG/M
3300006803|Ga0075467_10129280Not Available1472Open in IMG/M
3300006869|Ga0075477_10370503Not Available560Open in IMG/M
3300006920|Ga0070748_1123262Not Available976Open in IMG/M
3300007276|Ga0070747_1134068Not Available897Open in IMG/M
3300007346|Ga0070753_1136800Not Available935Open in IMG/M
3300007538|Ga0099851_1175714Not Available788Open in IMG/M
3300007539|Ga0099849_1293764Not Available588Open in IMG/M
3300007972|Ga0105745_1133575Not Available751Open in IMG/M
3300009056|Ga0102860_1123559All Organisms → Viruses725Open in IMG/M
3300009149|Ga0114918_10444842All Organisms → Viruses700Open in IMG/M
3300010150|Ga0098056_1042801Not Available1575Open in IMG/M
3300010296|Ga0129348_1199544All Organisms → Viruses681Open in IMG/M
3300010297|Ga0129345_1003597All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Cyanophage KBS-S-2A5966Open in IMG/M
3300010389|Ga0136549_10216991All Organisms → Viruses825Open in IMG/M
3300012518|Ga0129349_1252270All Organisms → Viruses572Open in IMG/M
3300012523|Ga0129350_1323410All Organisms → Viruses666Open in IMG/M
3300013010|Ga0129327_10077695Not Available1637Open in IMG/M
3300013010|Ga0129327_10160737Not Available1122Open in IMG/M
3300013010|Ga0129327_10577457All Organisms → Viruses618Open in IMG/M
3300017708|Ga0181369_1029375Not Available1300Open in IMG/M
3300017726|Ga0181381_1003197All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Cyanophage KBS-S-2A4312Open in IMG/M
3300017742|Ga0181399_1023745Not Available1697Open in IMG/M
3300017748|Ga0181393_1076025Not Available885Open in IMG/M
3300017757|Ga0181420_1073710Not Available1071Open in IMG/M
3300017763|Ga0181410_1008464Not Available3654Open in IMG/M
3300017770|Ga0187217_1145006Not Available797Open in IMG/M
3300017770|Ga0187217_1168889Not Available729Open in IMG/M
3300017951|Ga0181577_10134858Not Available1688Open in IMG/M
3300017951|Ga0181577_10557380Not Available711Open in IMG/M
3300018418|Ga0181567_10693764All Organisms → Viruses651Open in IMG/M
3300018420|Ga0181563_10158252Not Available1417Open in IMG/M
3300018426|Ga0181566_10119403All Organisms → Viruses1998Open in IMG/M
3300018428|Ga0181568_10269955Not Available1394Open in IMG/M
3300018775|Ga0188848_1013075Not Available904Open in IMG/M
3300019701|Ga0194015_1040793Not Available559Open in IMG/M
3300019703|Ga0194021_1007619Not Available894Open in IMG/M
3300019730|Ga0194001_1002398Not Available1531Open in IMG/M
3300019732|Ga0194014_1016701Not Available895Open in IMG/M
3300019732|Ga0194014_1021102Not Available816Open in IMG/M
3300019733|Ga0194013_1026261Not Available687Open in IMG/M
3300019737|Ga0193973_1072108Not Available506Open in IMG/M
3300019747|Ga0193978_1041475All Organisms → Viruses642Open in IMG/M
3300019749|Ga0193983_1002275Not Available1699Open in IMG/M
3300019751|Ga0194029_1024591Not Available932Open in IMG/M
3300019756|Ga0194023_1120856Not Available533Open in IMG/M
3300019765|Ga0194024_1003163All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3374Open in IMG/M
3300019765|Ga0194024_1142959Not Available560Open in IMG/M
3300021335|Ga0213867_1133526Not Available863Open in IMG/M
3300021347|Ga0213862_10008024All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Cyanophage KBS-S-2A4161Open in IMG/M
3300021347|Ga0213862_10152897Not Available811Open in IMG/M
3300021378|Ga0213861_10196383Not Available1103Open in IMG/M
3300021389|Ga0213868_10105795Not Available1806Open in IMG/M
3300021389|Ga0213868_10556578All Organisms → Viruses607Open in IMG/M
3300021957|Ga0222717_10027901Not Available3745Open in IMG/M
3300021958|Ga0222718_10261401Not Available914Open in IMG/M
3300021964|Ga0222719_10479957Not Available752Open in IMG/M
3300022065|Ga0212024_1032802Not Available885Open in IMG/M
3300022068|Ga0212021_1008693Not Available1670Open in IMG/M
3300022068|Ga0212021_1018154Not Available1291Open in IMG/M
3300022069|Ga0212026_1028555Not Available812Open in IMG/M
3300022169|Ga0196903_1022448Not Available760Open in IMG/M
3300022183|Ga0196891_1064237Not Available657Open in IMG/M
3300022187|Ga0196899_1169540All Organisms → Viruses595Open in IMG/M
(restricted) 3300024255|Ga0233438_10037868Not Available2597Open in IMG/M
3300024346|Ga0244775_10298283Not Available1337Open in IMG/M
3300025084|Ga0208298_1013508Not Available1937Open in IMG/M
3300025108|Ga0208793_1028697Not Available1873Open in IMG/M
3300025610|Ga0208149_1070011Not Available877Open in IMG/M
3300025652|Ga0208134_1140401All Organisms → Viruses620Open in IMG/M
3300025658|Ga0209659_1074446Not Available1166Open in IMG/M
3300025671|Ga0208898_1022479Not Available2749Open in IMG/M
3300025751|Ga0208150_1131125Not Available804Open in IMG/M
3300025759|Ga0208899_1184002Not Available679Open in IMG/M
3300025759|Ga0208899_1258212Not Available513Open in IMG/M
3300025771|Ga0208427_1133687Not Available831Open in IMG/M
3300025810|Ga0208543_1004728All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3558Open in IMG/M
3300025815|Ga0208785_1050427Not Available1167Open in IMG/M
3300025853|Ga0208645_1186722Not Available748Open in IMG/M
3300025880|Ga0209534_10115405Not Available1492Open in IMG/M
3300025889|Ga0208644_1348178Not Available566Open in IMG/M
(restricted) 3300027861|Ga0233415_10297307Not Available761Open in IMG/M
3300031519|Ga0307488_10000667Not Available28544Open in IMG/M
3300031519|Ga0307488_10017909Not Available5727Open in IMG/M
3300031519|Ga0307488_10276705All Organisms → Viruses → Predicted Viral1093Open in IMG/M
3300031519|Ga0307488_10684094Not Available583Open in IMG/M
3300034375|Ga0348336_019290Not Available3602Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous30.10%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment8.74%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine8.74%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater6.80%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater5.83%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh5.83%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine4.85%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient4.85%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater3.88%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine3.88%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine2.91%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water2.91%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.94%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake0.97%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.97%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface0.97%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.97%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine0.97%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine0.97%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.97%
Marine WaterEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water0.97%
Marine Methane Seep SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment0.97%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300001963Marine microbial communities from Nags Head, North Carolina, USA - GS013EnvironmentalOpen in IMG/M
3300004829Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVsEnvironmentalOpen in IMG/M
3300005239Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of MaineEnvironmentalOpen in IMG/M
3300006027Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300006637Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNAEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNAEnvironmentalOpen in IMG/M
3300006869Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300007276Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31EnvironmentalOpen in IMG/M
3300007346Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31EnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007972Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0umEnvironmentalOpen in IMG/M
3300009056Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3EnvironmentalOpen in IMG/M
3300009149Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaGEnvironmentalOpen in IMG/M
3300010150Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaGEnvironmentalOpen in IMG/M
3300010296Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNAEnvironmentalOpen in IMG/M
3300010297Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNAEnvironmentalOpen in IMG/M
3300010389Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsfEnvironmentalOpen in IMG/M
3300012518Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012523Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013010Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNAEnvironmentalOpen in IMG/M
3300017708Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaGEnvironmentalOpen in IMG/M
3300017726Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24EnvironmentalOpen in IMG/M
3300017742Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21EnvironmentalOpen in IMG/M
3300017748Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21EnvironmentalOpen in IMG/M
3300017757Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22EnvironmentalOpen in IMG/M
3300017763Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20EnvironmentalOpen in IMG/M
3300017770Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)EnvironmentalOpen in IMG/M
3300017951Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018418Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018420Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018426Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018428Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018775Metatranscriptome of marine microbial communities from Baltic Sea - GS679_0p8EnvironmentalOpen in IMG/M
3300019701Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_1-2_MGEnvironmentalOpen in IMG/M
3300019703Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_7-8_MGEnvironmentalOpen in IMG/M
3300019730Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLT_7-8_MGEnvironmentalOpen in IMG/M
3300019732Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_0-1_MGEnvironmentalOpen in IMG/M
3300019733Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_9-10_MGEnvironmentalOpen in IMG/M
3300019737Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRT_9-10_MGEnvironmentalOpen in IMG/M
3300019747Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRT_5-6_MGEnvironmentalOpen in IMG/M
3300019749Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BLT_4-5_MGEnvironmentalOpen in IMG/M
3300019751Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MGEnvironmentalOpen in IMG/M
3300019756Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MGEnvironmentalOpen in IMG/M
3300019765Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MGEnvironmentalOpen in IMG/M
3300021335Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540EnvironmentalOpen in IMG/M
3300021347Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266EnvironmentalOpen in IMG/M
3300021378Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131EnvironmentalOpen in IMG/M
3300021389Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022065Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)EnvironmentalOpen in IMG/M
3300022068Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)EnvironmentalOpen in IMG/M
3300022069Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v2)EnvironmentalOpen in IMG/M
3300022169Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022183Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3)EnvironmentalOpen in IMG/M
3300022187Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)EnvironmentalOpen in IMG/M
3300024255 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MGEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300025084Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025610Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025652Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)EnvironmentalOpen in IMG/M
3300025658Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_10m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025671Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)EnvironmentalOpen in IMG/M
3300025751Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025759Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)EnvironmentalOpen in IMG/M
3300025771Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025815Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025853Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)EnvironmentalOpen in IMG/M
3300025880Pelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300027861 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MGEnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300034375Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2011_1011648823300000115MarineMEEFLNALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAELLTEDGEEATA*
DelMOSpr2010_1000960073300000116MarineMEEFLNALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAELLTEDDEEATA*
DelMOSpr2010_1003838123300000116MarineMEEFLNALDSLIEETEGLSVIELVGALELAKSDIIAGLAVAELLTEDGEEATA*
DelMOSpr2010_1008838713300000116MarineMEEFLSALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAEMLAEDGEGEGEEATA*
DelMOSpr2010_1015512413300000116MarineSALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAEMLAEDGEGEGEEATA*
DelMOSpr2010_1019825313300000116MarineMEQFLNALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAELLTEDGEEATA*
DelMOSpr2010_1022526723300000116MarineMEQFLNALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAELLTADGEEA
DelMOWin2010_1003096723300000117MarineMEEFLNALDDLIEATEGLSVIELVGALELAKSDIISGLAAAELMTEEGEGEGEEVTA*
DelMOWin2010_1003501333300000117MarineMEEFLTALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAELLTEDGEEATA*
GOS2229_103973143300001963MarineMEEFLSALDDLIAETEGLSVIELVGALELAKNDIISGLAVAEMLAEDGEGEEATA*
GOS2229_105543323300001963MarineMEEFLSALDDLIAETKGLSVIELVGALELAKNDIISVLAVAEMLAEDGEGEGEEATA*
Ga0068515_10210413300004829Marine WaterMEEFLNALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAELLTEDDEDATA*
Ga0073579_1190682333300005239MarineMEEFLNALDDLIAETEGLSVIELVGALELAKSDIIAGLAVAELLTEDGEEATA*
Ga0075462_1021876213300006027AqueousMEEFLNALDELIAETEGLSVIELVGALELAKNDIIAGLAVAEMLAEDGEGEGEEATA*
Ga0075462_1025477123300006027AqueousMEEFLNALDELIAETEGLSVIELVGALELAKNDIISGLALAEMLAEEGEGEGEEATA*
Ga0075461_1015525123300006637AqueousLNALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAELLTEDGEEATA*
Ga0098054_109743823300006789MarineMEEFLNALDDLIAETEGLGVIELVGALELAKSDIIAGLAVAELLTEDGEEATA*
Ga0075467_1012928033300006803AqueousMEEFLNALDDLIAETEGLSVIELVGALELAKNDIIAWLAVAELLTEDGEEATA*
Ga0075477_1037050313300006869AqueousMEEFLNALDELIAETEGLSVIELVGALELAKNDIISGLAVAEML
Ga0070748_112326213300006920AqueousNALDDLIAETEGLSVIELVGALELAKNYIIAGLAVAELLTEDGEEATA*
Ga0070747_113406823300007276AqueousEPIPSIMEEFLNALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAELLTEDGEEATA*
Ga0070753_113680013300007346AqueousALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAELLTEDGEEATA*
Ga0099851_117571413300007538AqueousIMEEFLSALDDLIAETEGLSVIELVGALELAKNDIISGLAVAEMLAEDGEGEGEEATA*
Ga0099849_129376413300007539AqueousMEEFLSALDELIAETEGLSVIELVGALELAKNDIIAGLAVAEMLAE
Ga0105745_113357523300007972Estuary WaterMEEFLNALDDLIAEAEGLSVIELVGALELAKNDIISGLAVAELLTEDDEEATA*
Ga0102860_112355923300009056EstuarineMEQFLNALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAELLTEDDEEATA*
Ga0114918_1044484223300009149Deep SubsurfaceMEEFLNALDSLIEETEGLSVIELVGALELAKNDIIAGLAVAELLTEDGEEATA*
Ga0098056_104280123300010150MarineMEEFLNALDDLIAETEGLSVIELVGALELAKNDIITGLAVAELLTEDGEEATA*
Ga0129348_119954413300010296Freshwater To Marine Saline GradientMEEFLNALDDLIEATEGLSVIELVGALELAKIDIISGLAAAELMTEEGEGEGEEVTA*
Ga0129345_100359743300010297Freshwater To Marine Saline GradientMEEFLSALDDLIAETEGLSVIELVGALELAKNDIISGLAVAEMLAEDGEGEGEEATA*
Ga0136549_1021699123300010389Marine Methane Seep SedimentMEEFLNALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAELLTEDGEEVTA*
Ga0129349_125227013300012518AqueousAESTPSIMEEFLSALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAEMLAEDGEGEGEEATA*
Ga0129350_132341013300012523AqueousSIMEEFLSALDDLIAETEGLSVIELVGALELAKNDIISGLAVAEMLAEDGEGEGEEATA*
Ga0129327_1007769523300013010Freshwater To Marine Saline GradientMEEFLNALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAEMLAE
Ga0129327_1016073723300013010Freshwater To Marine Saline GradientMEEFLSALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAEMLAE
Ga0129327_1057745733300013010Freshwater To Marine Saline GradientALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAEMLAEDGEGEGEEATA*
Ga0181369_102937523300017708MarineMEEFLNALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAELIADDGDGEEATA
Ga0181381_100319743300017726SeawaterMEEFLNALDDLIAETEGLSVIELVGALELAKSDIIAGLTVAELLTEDGEEATA
Ga0181399_102374513300017742SeawaterALDDLIAETEGLSVIELVGALELAKNDIITGLAVAEMLTEEGEGEEATA
Ga0181393_107602523300017748SeawaterMPVFDASCYVRAEPIPSIMEEFLNALDDLIAETDGLSVIELVGALELAKNDIITGLAVAELLTEDGEEATA
Ga0181420_107371023300017757SeawaterMEEFLNALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAELVADDSEEAAV
Ga0181410_100846433300017763SeawaterMEEFLNALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAELMTEDNEEATA
Ga0187217_114500623300017770SeawaterMEEFLNALDDLIAETDGLSVIELVGALELAKNDIIAGLAVAELLTEDGEEATA
Ga0187217_116888913300017770SeawaterMEEFLNALDDLIADTEGLSVIELVGALELAKSDIIAGLTVAELLTEDGEEATA
Ga0181577_1013485823300017951Salt MarshMEEFLNALDELIAETEGLSVIELVGALELAKNDIIAGLAVAEMLAEDGEGEGEEATA
Ga0181577_1055738033300017951Salt MarshMEEFLNALDELIAETEGLSVIELVGALELAKNDIIAGLAVAEMLTEDGEGEEATA
Ga0181567_1069376413300018418Salt MarshNALDELIAETEGLSVIELVGALELAKNDIIAGLAVAEMLTEDGEGEEATA
Ga0181563_1015825213300018420Salt MarshMEEFLNALDELIAETEGLSVIELVGALELAKNDIIAGLAVAEMLT
Ga0181566_1011940323300018426Salt MarshMEQFLNALDELIAETEGLSVIELVGALELAKNDIIAGLAVAEMLTEDGEGEEATA
Ga0181568_1026995513300018428Salt MarshEFLNALDELIAETEGLSVIELVGALELAKNDIIAGLAVAEMLAEDGEGEEATA
Ga0188848_101307523300018775Freshwater LakeMEEFLNALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAELLTEE
Ga0194015_104079313300019701SedimentMEEFLSALDDLIAETEGRSVIELVGALELAKSDIISGLAVAELLTEDGEEATA
Ga0194021_100761923300019703SedimentMEEFLSALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAEMLAEDGEGEGEEATA
Ga0194001_100239813300019730SedimentSIMEEFLSALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAEMLAEDGEGEGEEATA
Ga0194014_101670133300019732SedimentDDLIAETEGLSVIELVGALELAKNDIISGLAVAEMLAEDGEGEGEEATA
Ga0194014_102110213300019732SedimentMEEFLNALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAEMLAEDGEGEGEEATA
Ga0194013_102626113300019733SedimentMEEFLNALDELIAETEGLSVIELVGALELAKNDIIAGLAVAEMLTEEGEGEGEGEEATA
Ga0193973_107210823300019737SedimentMEEFLNALDELIAETEGLSVIELVGALELAKNDIIAGLAVAEMLTEEGEGEEATA
Ga0193978_104147513300019747SedimentMEEFLSALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAEMLTEEGEGEGEEATA
Ga0193983_100227523300019749SedimentMEEFLSALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAEMLTEEGEGEEATA
Ga0194029_102459123300019751FreshwaterMEEFLNALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAELLTEDGEEATA
Ga0194023_112085613300019756FreshwaterMEEFLTALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAELLTEDGEEATA
Ga0194024_100316313300019765FreshwaterMEEFLTALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAEMLAEDGEGEG
Ga0194024_114295913300019765FreshwaterMEEFLSALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAEMLAED
Ga0213867_113352613300021335SeawaterMEEFLSALDDLIAETEGLSVIELVGALELAKNDIISGLAVAEMLAEDGEGEGEEATA
Ga0213862_1000802463300021347SeawaterPSIMEEFLNALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAELLTEDGEEATA
Ga0213862_1015289713300021347SeawaterPSIMEEFLNALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAEMLAEDGEGEGEEATA
Ga0213861_1019638313300021378SeawaterMEEFLSALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAEMLAEDGEGEGEGEEATA
Ga0213868_1010579513300021389SeawaterMEEFLNALDELIAETEGLSVIELVGALELAKNDIISGLAVAEMLAEDGEGEGEEATA
Ga0213868_1055657813300021389SeawaterSFMEEFLNALDDLIAETEGLSVIELVGALELAKSDIISGLAVAELLTEDGEEATA
Ga0222717_1002790143300021957Estuarine WaterMEEFLTALDDLIAETEGLSVVELVGALELAKNDIIAGLAVAELLTEDGEEATA
Ga0222718_1026140123300021958Estuarine WaterMEEFLNALDDLIAETEGLSVVELVGALELAKNDIIAGLAVAELLTEDGEEATA
Ga0222719_1047995723300021964Estuarine WaterMEEFLNALDELIAETEGLSVIELVGALELAKSDIIAGLAVAEMLTEEGEGEEATA
Ga0212024_103280233300022065AqueousSALDDLIAETEGLSVIELVGALELAKNDIISGLAVAEMLAEDGEGEGEEATA
Ga0212021_100869333300022068AqueousMEEFLSALDDLIAETEGLSVIELVGALELAKNDIISGLALAEMLAEEGEGEGEEATA
Ga0212021_101815413300022068AqueousMEEFLNALDELIAETEGLSVIELVGALELAKNDIISGLALAEMLAEEGEG
Ga0212026_102855513300022069AqueousMEEFLSALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAEMLAEDGE
Ga0196903_102244833300022169AqueousEEFLNALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAEMLAEDGEGEGEEATA
Ga0196891_106423723300022183AqueousMEEFLNALDELIAETEGLSVIELVGALELAKNDIISGLALAEMLAEEGEGEGEEATA
Ga0196899_116954013300022187AqueousAEPIPSIMEEFLSALDDLIAETEGLSVIELVGALELAKNDIISGLAVAEMLAEDGEGEGEEATA
(restricted) Ga0233438_1003786833300024255SeawaterMEEFLNALDDLVAATEGLSVIELVGALELTKHDIIVGLAAAELLIEDDEEATA
Ga0244775_1029828323300024346EstuarineMEEFLNALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAELLTEDDEEATA
Ga0208298_101350823300025084MarineMEEFLNALDDLIAETEGLGVIELVGALELAKSDIIAGLAVAELLTEDGEEATA
Ga0208793_102869733300025108MarineMEEFLNALDDLIAETEGLSVIELVGALELAKNDIITGLAVAELLTEDGEEATA
Ga0208149_107001123300025610AqueousMEEFLSALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAEMLTEEGEGEGEGEEATA
Ga0208134_114040113300025652AqueousSALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAEMLAEDGEGEGEEATA
Ga0209659_107444633300025658MarineMEEFLSALDALIEETEGLSVIELVGALELAKSDIIAGLAVAELLTEDGEEATA
Ga0208898_102247913300025671AqueousVRAEPIPSIMEEFLSALDDLIAETEGLSVIELVGALELAKNDIISGLAVAEMLAEDGEGEGEEATA
Ga0208150_113112513300025751AqueousMEEFLNALDDLIAETEGLSVIELVGALELAKNDIISGLAVAEMLAEDGEGEGEEATA
Ga0208899_118400213300025759AqueousMEEFLSALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAEMLAEEGEGEEATA
Ga0208899_125821223300025759AqueousMEEFLNALDDLIAETEGLSVIELVGALELAKSDIIAGLAVAELLTEDGEEATA
Ga0208427_113368713300025771AqueousMEEFLSALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAEMLAEDG
Ga0208543_100472853300025810AqueousMEEFLSALDDLIAETEGLSVIELVGALELAKNDIISGLAVAEMLAEDG
Ga0208785_105042723300025815AqueousMEEFLNALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAEMLAEDG
Ga0208645_118672223300025853AqueousMEEFLNALDDLIEATEGLSVIELVGALELAKSDIISGLAAAELMTEEGEGEGEEVTA
Ga0209534_1011540513300025880Pelagic MarineLLSLSERIPSIMEEFLSALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAEMLAEDGEGEGEEATA
Ga0208644_134817813300025889AqueousMEEFLSALDDLIAETEGLSVIELVGALELAKNDIISGLAVAEMLAEDGEGEG
(restricted) Ga0233415_1029730723300027861SeawaterIPSIMEEFLNALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAELLTEDDEEATA
Ga0307488_10000667313300031519Sackhole BrineMEEFLSALDALIEETEGLSVIELVGALELAKNDIIAGLAVAELLTEDGEEATA
Ga0307488_1001790973300031519Sackhole BrineMEQFLNALDDLIAETEGLSVIELVGALELAKNDIIAGLAVAELLTEDDEEATA
Ga0307488_1027670523300031519Sackhole BrineKAERIPSTMEEFLSALDALIEETEGLSVIELVGALELAKSDIIAGLAVAELLTEDGEEAT
Ga0307488_1068409413300031519Sackhole BrineMEEFLNALDALIEETEGLSVIELVGALELAKSDIIAGLAVAELLTEDGEEATA
Ga0348336_019290_3448_36003300034375AqueousLDDLIAETEGLSVIELVGALELAKNDIIAGLAVAEMLAEDGEGEGEEATA


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