Metagenome / Metatranscriptome Family F099252

Basic Information
Family ID	F099252
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	58 residues
Representative Sequence	MGDLFGNDAWLTLVLGAAFVATFLLAVLLLSTRTKGQQRRSLATLMGRGG
Number of Associated Samples	94
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	1.94 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (98.058 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.621 % of family members)
Environment Ontology (ENVO)	Unclassified (25.243 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (29.126 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 70.00% β-sheet: 0.00% Coil/Unstructured: 30.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00437	T2SSE	83.50
PF01656	CbiA	1.94
PF16976	RcpC	1.94
PF04964	Flp_Fap	0.97
PF00482	T2SSF	0.97
PF07811	TadE	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG3847	Flp pilus assembly protein, pilin Flp	Extracellular structures [W]	0.97

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.06 %
All Organisms	root	All Organisms	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.06 %
cellular organisms	root	All Organisms → cellular organisms	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.06 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.06 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.06 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.97 %

Scaffold	Taxonomy	Length	IMG/M Link
3300026088\|Ga0207641_10011445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7283	Open in IMG/M
3300027454\|Ga0207623_100039	All Organisms → cellular organisms → Bacteria	4548	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.64%
Host-Associated	Host-Associated	21.36%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.96%
Plants	Host-Associated → Plants	21.36%
Aquatic	Environmental → Aquatic	10.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.08%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.68%
Sediment	Environmental → Aquatic → Sediment	6.80%
Floodplain	Environmental → Terrestrial → Floodplain	2.91%
Freshwater	Environmental → Aquatic → Freshwater	1.94%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.94%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.46%
Sand	Environmental → Terrestrial → Soil → Sand	11.65%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.85%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	2.91%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.94%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	1.94%
Loam	Environmental → Terrestrial → Soil → Loam	0.97%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.07%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	11.65%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	9.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.91%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	2.91%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	1.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.94%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.97%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.62%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	11.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	9.71%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.85%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.91%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	2.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.91%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.94%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	1.94%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	1.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.94%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.97%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.97%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001976	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7	Host-Associated	Open in IMG/M
3300001977	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5	Host-Associated	Open in IMG/M
3300001978	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6	Host-Associated	Open in IMG/M
3300002155	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX- M7	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300006576	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009800	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_30_40	Environmental	Open in IMG/M
3300009810	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30	Environmental	Open in IMG/M
3300009811	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30	Environmental	Open in IMG/M
3300009819	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_40_50	Environmental	Open in IMG/M
3300009836	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20	Environmental	Open in IMG/M
3300010029	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_10_20	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300012021	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T1	Environmental	Open in IMG/M
3300012159	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT500_2	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300014965	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T2	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025310	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026912	Soil and rhizosphere microbial communities from Laval, Canada - mgHPB (SPAdes)	Environmental	Open in IMG/M
3300027379	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027451	Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G09K3-12 (SPAdes)	Environmental	Open in IMG/M
3300027454	Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G09K2-12 (SPAdes)	Environmental	Open in IMG/M
3300027490	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300027561	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027954	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027957	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027961	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030552	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Db7 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030579	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Bnb10 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030590	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cb8 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030592	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Ab1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030633	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Anb12 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030904	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_202 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M
3300034151	Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17	Environmental	Open in IMG/M
3300034661	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034672	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034673	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034675	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034690	Sediment microbial communities from East River floodplain, Colorado, United States - 60_j17	Environmental	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_16606331	3300000033	Soil	MIHEMQKLFGTDAWLTLVLGAAFGATFLVAVLMLSVSAKGRQRKSLASLMGRKKTTETTWLPEGLTQAG
JGI11643J12802_112403272	3300000890	Soil	MGDLFGNDAWLTLVLGAAFVATFLLAVLILSTGRKGQQRRSLAALMGRGGKK
JGI11643J12802_117166081	3300000890	Soil	MGDLFGNDAWLTLVLGAAFVATFLLAVMLLSTRTKGQQR
JGI24752J21851_10340542	3300001976	Corn, Switchgrass And Miscanthus Rhizosphere	MSDLFGNDAWLTLVLGAAFVATFLLGVMLLSTRTKGQQRRSLATLXGRG
JGI24746J21847_10231401	3300001977	Corn, Switchgrass And Miscanthus Rhizosphere	MSDLFGNDAWLTLVLGAAFVATFLLGVMLLSTRTKGQQRRSLATLMGRGGKKEEAKESSWIPAGMA
JGI24747J21853_10347042	3300001978	Corn, Switchgrass And Miscanthus Rhizosphere	MSDLFGNDAWLTLVLGAAFVATFLLGVMLLSTRTKGQQRRSLATLM
JGI24033J26618_10008011	3300002155	Corn, Switchgrass And Miscanthus Rhizosphere	MSDLFGNDAWLTLVLGAAFVATFLLGVMLLSTRTKGQQRRSLATLMGRGGKKQEAKESSWIPAGMAE
Ga0063356_1043285282	3300004463	Arabidopsis Thaliana Rhizosphere	MEVDAMGDLFGNDAWLTLVLGAAFVATFLLAVMLLSTRTKGQQRRSLAALMGRGKKDAKDAAS
Ga0066809_100008336	3300005168	Soil	MTRDLFGNDAWLTLVLGAAFVATFLLAVLLLSTRTKGQQRRSLATLMG
Ga0065705_102015802	3300005294	Switchgrass Rhizosphere	MGDLFGNDAWLTVVLGAAFVATFLVAVLLLSTRSKGQQRRSLATLMGRGGKKQAGETSWIPAGM
Ga0065705_105840042	3300005294	Switchgrass Rhizosphere	MGVEAMGDLFGNDAWLTLVLGAAFVATFLVAVLLLSTRTKGQQRRSLATLMGRGEKKSAKETSW
Ga0070675_1018513282	3300005354	Miscanthus Rhizosphere	MGDLFGNDAWLTLVLGAAFVATFLVAVLLLSTGRKGQQRRSLAALMGRGGKKAANETSWIPAGMAEAGDRLATAS
Ga0070699_1008442602	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MGDLFGNDAWLTLVLGAAFVATFLLAVLLLSTRTKGQQRRSLAALMGRGGKKAANETSWIPAGMAEAGDRLAT
Ga0068857_1012304962	3300005577	Corn Rhizosphere	MGDLFGNDAWLTVVLGAAFVATFLVAVLLLSTRTKGQQRRSLATLMGR
Ga0068864_1016274802	3300005618	Switchgrass Rhizosphere	MGDLFGNDAWLTVVLGAAFVATFLVAVLLLSTRTKGQQRRSLATLMGRGGKKQAGETSWIPAGMAEAGDRLATASG
Ga0074047_120755891	3300006576	Soil	MTRDLFGNDAWLTLVLGAAFVATFLLAVLLLSTRTKGQQRRSLAALMGRGGKKPAGQTSWIPAGMAEAGDRLATAG
Ga0074050_100239992	3300006577	Soil	MTRDLFGNDAWLTLVLGAAFVATFLLAVLLLSTRTKGQQRRSLATLMGRGGKKSAK
Ga0075421_1003324801	3300006845	Populus Rhizosphere	MGDLFGNDAWLTLVLGAAFVATFLLAVLLLSTRTKGQQ
Ga0075421_1013127421	3300006845	Populus Rhizosphere	MADLFGNDAWLTVVLGAAFVATFLVAVLLLSTRSKGQQRRSLATLMGRGGKKQAGETSWIPAGMAEAGDRLATAS
Ga0075421_1022345752	3300006845	Populus Rhizosphere	MSDLFGNDAWLTFVLGAAFVATFLLAVLLLSTRTKGQQRRSLAGLMGRGKKDTPSETSWMPAGLAQAGDRLATAGGFGGR
Ga0073934_100689671	3300006865	Hot Spring Sediment	MSDLFGNDAWLTFVLGAAFVATFLLAVLLLSTRTKGQQRRSLAGLMGRGKKDAASETSWIPAGMAQAGERLA
Ga0075434_1002123043	3300006871	Populus Rhizosphere	MGDLFGNDAWLTLVLGAAFVATFLLAVLLLSTRTKGQQRRSLAALMGRGGKKAANETSWIPAGMAEAGDRLATA
Ga0105069_10051031	3300009800	Groundwater Sand	MGDLFANDAWLTVVLGAAFVATFLLAVLLLSTRTKGQQRRSLA
Ga0105088_10429362	3300009810	Groundwater Sand	MTQIQKLLGTDAWLTLVLGAAFVAAFLLAVLLLSVRSKGRRRRS
Ga0105084_10501622	3300009811	Groundwater Sand	MTQIEKLLGTDAWLTLVLGAAFVAPFLLALLLLSGRWKGRRRRSLANLPLGRGKDAAVET
Ga0105087_11113752	3300009819	Groundwater Sand	MGDLFGNDAWLTLVLGAAFVATFLLAVLLLSTKSKGQQRRSLAALMGRGGKKAANETSWIPAGMAE
Ga0105068_10946642	3300009836	Groundwater Sand	MGDLFGNDAWLTLVLGAAFVATFLVAVLLLSTGKKGQQRRSVAALMGRGGKKAANEASWIPAGMAEAGDRLATA
Ga0105074_10259671	3300010029	Groundwater Sand	MGDLFGNDAWLTLVLGAAFVATFLLAVLLLSTGKKGQQRRSVAAL
Ga0126315_101586712	3300010038	Serpentine Soil	MGDLFGNDAWLTLVLGAAFVATFLLAVLLLSTRTKGQQRRSLATLMGRGGKKQTGETSWIPAGMAEAGDRLATASGFSARLE
Ga0126308_103897321	3300010040	Serpentine Soil	MEVGAMGDLFGNDAWLTLVLGAAFVATFLLAVLLLSTRTKGQQRRSLATLMGRGGKKQTGETSWIPAGMAEAGDR
Ga0126312_104341691	3300010041	Serpentine Soil	MTRDLFGNDAWLTLVLGAAFVATFLLAMLLLSTRTKGQQR
Ga0126314_105775492	3300010042	Serpentine Soil	MIHEIQTLFGTDAWLTLVLGAAFGATFLLAVLILSVRAKG
Ga0120192_100964542	3300012021	Terrestrial	MGDLFGNDAWLVAVLGAAFVATFLLAVLLLSTRSKGQQRRSLATLKG
Ga0137344_10675931	3300012159	Soil	MSDLFGNDAWLTLVLGTAFVATFLVAVMLLSTRTKGQQRRSLAGLMGRGKKDAASETSW
Ga0137374_109341811	3300012204	Vadose Zone Soil	MSRIQELFGTDAWLTLVLGAAFVAAFLLAVLLLSMRAKGRQRRSMSQLMLGR
Ga0137367_100515504	3300012353	Vadose Zone Soil	MEVEAMGDLFGNDAWLLVVLGAAFVATFLLAVLLLSTRTKGQQRRSLATLMGRGGKKQAGETSWI
Ga0137367_105176132	3300012353	Vadose Zone Soil	MSQIEKLLGTDAWLTLVLGAAFVAAFLLAVLLLSVRAKGRRRRSVANLMLGRGKDTAVETTW
Ga0137367_110221162	3300012353	Vadose Zone Soil	MEVDAMGDLFGNDAWLLVVLGAAFVATFLLAVLLLSTRTKGQQRRSLATLMGRGGKKQAGETSWIPAGMAEA
Ga0137368_104248341	3300012358	Vadose Zone Soil	MEDEAMGDLFGNDAWLTVVLGAAFVATFLVAVLLLSTRTKGQQRRSLATLMGRGGKKQAGETSWIPAGMAEAGD
Ga0137373_110160051	3300012532	Vadose Zone Soil	MTQIQKLFGTDAWLTIVLGAAFVAAFLLAVLLLSMRAKGRQRRSMSQLM
Ga0162650_1000610671	3300012939	Soil	MGDLFGNDAWLTVVLGAAFVATFLLAVLLLSTRSKGQQRRSLATLMGRGGKKQAGETSWIPAGMAEAGDRLATASGFS
Ga0164300_102849521	3300012951	Soil	MGDLFGNDAWLTLVLGAAFVATFLVAVLLLSTRTKGQQRRSLAT
Ga0120193_100046612	3300014965	Terrestrial	MEVGAMGDLFGNDAWLTLVLGTAFVATFLLAVLLLSTRTKGQQRRSLATLMGRGGKKQTGETSWIPAGMAEAGDRLA
Ga0132256_1009857501	3300015372	Arabidopsis Rhizosphere	MGDLFGNDAWLTLVLGAAFVATFLVAVLLLSTRTKGQQRRSLATLMGRG
Ga0132255_1035616371	3300015374	Arabidopsis Rhizosphere	MGDLFGNDAWLTLVLGAAFVATFLVAVLLLSTRTKGQQRRSLATLMGRGEKKSAKETSWIPAGMAEAGDRL
Ga0184605_104789452	3300018027	Groundwater Sediment	MGDLFGNDAWLTVVLGAAFVATFLVAVLLLSTRTKGQQRRSLATLMGRG
Ga0184634_103963942	3300018031	Groundwater Sediment	MTQIEKLLGTDAWLTLVLGAAFVAAFLLAVLLLSVRSKGRRRRSVANLMLGRGKDAAVETTW
Ga0184626_100436091	3300018053	Groundwater Sediment	MTQIEKLLGTDAWLTLVLGAAFVAAFLLAVLLLSVRSKGRRRRSVANLMLGRGKDTAVETTWMPAGLAQAG
Ga0184626_101759072	3300018053	Groundwater Sediment	MTREIQKLLGTDAWLTLVLGAAFVAAFLVAVLLLSMRAKGRQRRSLANLMLGRGKDAATETTWMPAG
Ga0184626_104044341	3300018053	Groundwater Sediment	MSDLFGNDAWLTFVLGAAFVATFLLAVLLLSTRTKGQQRRSLAGLMGRGKKDA
Ga0184625_102500581	3300018081	Groundwater Sediment	MGDLFGNDAWLTLVLGAAFVATFLVAVLLLSTKSKGQQRRSL
Ga0190267_105782261	3300019767	Soil	MTRDLFGNDAWLTLVLGAAFVATFLLAVLLLSTRSKGQQRRSLAGLMGRGKKEAASETS
Ga0193697_11295511	3300020005	Soil	MADLFGNDAWLTVVLGAAFVATFLVAVLLLSTRTKGQQRRSLATLMGRGGKKQAGRPR
Ga0210382_101558551	3300021080	Groundwater Sediment	MGDLFGNDAWLTVVLGAAFVATFLVAVLLLSTRTKGQQRRSLATLMGRGGKKQAGETSWIPAGMAEAGDRLATASGFSGRLEL
Ga0222624_11781222	3300021951	Groundwater Sediment	MGDLFGNDAWLTVVLGAAFVATFLVAVLLLSTRTKGQQRRSLATLVGRGGKKQAGETSWIPA
Ga0209172_101465542	3300025310	Hot Spring Sediment	MSDLFGNDAWLTFVLGAAFVATFLLAVLLLSTRTKGQQRRSLAGLMGRGKKD
Ga0207650_110854581	3300025925	Switchgrass Rhizosphere	MSDLFGNDAWLTLVLGAAFVATFLLGVMLLSTRTKGQQRRSLATLMGRG
Ga0207659_108248442	3300025926	Miscanthus Rhizosphere	MGDLFGNDAWLTVVLGAAFVATFLVAVLLLSTRTKGQQRRSLATLMGRGGKKQAGETSW
Ga0207639_119583501	3300026041	Corn Rhizosphere	MGDLFGNDAWLTLVLGAAFVATFLLAVLLLSTRTKGQQRR
Ga0207641_100114459	3300026088	Switchgrass Rhizosphere	MSDLFGNDAWLTLVLGAAFVATFLLGVMLLSTRTKGQQRRSLATLMGR
Ga0207641_109592861	3300026088	Switchgrass Rhizosphere	MGDLFGNDAWLTLVLGAAFVATFLLAVLILSTRTKGQQRRSLAA
Ga0208520_10011541	3300026912	Soil	MTRDLFGNDAWLTLVLGAAFVATFLLAVLLLSTRTKGQQRRSLATLMGRGGKKSAKETSWIPAGMAEAGDRLATA
Ga0209842_10721991	3300027379	Groundwater Sand	MGDLFGNDAWLTLVLGAAFVATFLLAVLLLSTGKKGQQRRSVAALMGRGGKKA
Ga0207599_1001942	3300027451	Soil	MSDLFGNDAWLTLVLGAAFVATFLVAVLLLSTRTKGQQRRSLATLMGRGGKKQAGETSWIPAGM
Ga0207623_1000391	3300027454	Soil	MGDLFGNDAWLTVVLGAAFVATFLVAVLLLSTRTKGQQRRSLATLMGRGGKKQAGETSWIPAGM
Ga0209899_10646502	3300027490	Groundwater Sand	MSDLFGNDAWLTLVLGAAFVATFLLAVLLLSTRTKGQQRRSLAGLMGRGKKDTASETTW
Ga0207981_10025491	3300027560	Soil	MTRDLFGNDAWLTLVLGAAFVATFLLAVLLLSTRTKGQQR
Ga0209887_10985802	3300027561	Groundwater Sand	MTQIEKLLGTDAWLTLVLGAAFVAAFLLAVLLLSVRSKGRRRRSVANLMLG
Ga0209481_102089012	3300027880	Populus Rhizosphere	MGDLFGNDAWLTLVLGAAFVATFLLAVLILSTRTKGQKR
Ga0209859_10830112	3300027954	Groundwater Sand	MTQIQKLLGTDAWLTLILGAAFVAAFLVAVLLLSMGAKGRKR
Ga0209857_10500881	3300027957	Groundwater Sand	MGDLFGNDAWLTLVLGAAFVATFLVAVLLLSTGKKGQQ
Ga0209853_11522881	3300027961	Groundwater Sand	MTQIEKLLGTDAWLTLVLGAAFVAAFLLAVLLLSVRSKGRRRRSVANLMLGRGKDAAVETTWMPAG
Ga0247820_105083752	3300028597	Soil	MGDLFGNDAWLTLVLGAAFVATFLLAVMLLSTRTKGQQRRSLAALMGRGKKDAKDAASETSWIP
Ga0307291_10446281	3300028707	Soil	MGDLFGNDAWLTVVLGAAFVATFLVAVLLLSTRTKGQ
Ga0307293_100059401	3300028711	Soil	MGDLFGNDAWLTVVLGAAFVATFLVAVLLLSTRTKGQQRRSLATLMGRGGKKQAGETSWI
Ga0307312_105551811	3300028828	Soil	MTQIEKLLGTDAWLTLVLGAAFVAAFLLAVLLLSVRAKGRRRRSVANLMLGRGKDTAVETTWMP
Ga0307304_105049691	3300028885	Soil	MGDLFGNDAWLTVVLGAAFVATFLVAVLLLSTRTKGQQRRSL
Ga0247654_10004103	3300030552	Soil	MSDLFGNDAWLTFVLGAAFLATFLLAVLLLSTRSKGQQRRSLAGLMGRGKKDTASETSW
Ga0247633_102224781	3300030579	Soil	MSDLFGNDAWLTFVLGAAFLATFLLAVLLLSTRSKGQQRRSLAGLMGRGKK
Ga0247643_10010362	3300030590	Soil	MSDLFGNDAWLTFVLGAAFLATFLLAVLLLSTRSKGQQRRSLAGLMGRGKKDTASETSWMPAGLAQAG
Ga0247612_10147112	3300030592	Soil	MSDLFGNDAWLTFVLGAAFVATFLLAVLLLSTRSKGQQRRSLAGLMGRSKKDAAAETS
Ga0247623_100406141	3300030633	Soil	MSDLFGNDAWLTFVLGAAFVATFLLAVLLLSTRSKGQQRRSLAGLMGRGKKDAASETSWMPAGLAQA
Ga0308198_10059851	3300030904	Soil	MGDLFGNDAWLTVVLGAAFVATFLVAVLLLSTRTKGQQRRSLATLMGRGGKKQAGETSWIPAGMAEAGDRLATASGFSG
Ga0308190_10068932	3300030993	Soil	MGDLFGNDAWLTVVLGAAFVATFLVAVLLLSTRTKGQQRRSLATLMGRGGKK
Ga0308189_102650411	3300031058	Soil	MADLFGNDAWLTVVLGAAFVATFLVAVLLLSTRTKGQQRRSLATLMGRGGKKQAGETSWIPAGMAEAGDRLATAS
Ga0308197_100701521	3300031093	Soil	MGDLFGNDAWLTVVLGAAFVATFLVAVLLLSTRTKGQQRRSLATLMGRGG
Ga0308199_11368051	3300031094	Soil	MGDLFGNDAWLTVVLGAAFVATFLVAVLLLSTRTKGQQRRSLATLMGRGGKKQAGETS
Ga0308187_101396881	3300031114	Soil	MTQIEKLLGTDAWLTLVLGAAFVAAFLLAVLLLSVRAKGRRRRSVANLMLGRGKDAAVETTWMPAGLAQA
Ga0310887_107641161	3300031547	Soil	MSDLFGNDAWLTLVLGAAFVATFLLGVMLLSTRTKGQQRRSLATLMGRGGKKQE
Ga0310886_105475331	3300031562	Soil	MGDLFGNDAWLTLVLGAAFVATFLVAVLLLSTRTKGQQRRSLATLMGRGGKKQAKESSWIPAGMAEAGDRLATAS
Ga0310904_107373722	3300031854	Soil	MGDLFGNDAWLTLVLGAAFVATFLVAVLLLSTRTKG
Ga0310900_115514561	3300031908	Soil	MGDLFGNDAWLTLVLGAAFVATFLVAVLLLSTRTKGQQRRSLATLMGRGEKKSAK
Ga0214473_108990031	3300031949	Soil	MIREIQKLFGTDAWLTLVLGAAFAGTFLLAVLILSVTSKGRKRRSLAVLMGRGKKATDETSWVPTGLAQAGERLAEAGGFSSR
Ga0307409_1008601761	3300031995	Rhizosphere	MGDLFGNDAWLTLVLGAAFVATFLLAVLLLSTRTKGQQRRSLATLMGRGG
Ga0310890_111255991	3300032075	Soil	MGDLFGNDAWLTLVLGAAFVATFLVAVLLLSTRTKGQQRRSLATLMGRGE
Ga0364929_0275066_3_191	3300034149	Sediment	MSDLFGNDAWLTLVLGAAFVATFLLAVMLLSTRTKGQQRRSLAGLMGRGKKDAASETSWIPAG
Ga0364935_0046349_1_120	3300034151	Sediment	MTPLFGNDAWLTLVLGAAFVATFLLALLLLSTRTKGQQRR
Ga0314782_194224_387_521	3300034661	Soil	MGDLFGNDAWLTLVLGAAFVATFLVAVLLLSTRTKGQQRRSVATL
Ga0314797_003775_1656_1847	3300034672	Soil	MGDLFGNDAWLTLVLGAAFVATFLVAVLLLSTRTKGQQRRSVATLMGRGEKKSAKETSWIPAGM
Ga0314798_047681_651_794	3300034673	Soil	MGDLFGNDAWLTLVLGAAFVATFLVAVLLLSTRTKGQQRRSLATLMGR
Ga0314800_072217_283_525	3300034675	Soil	MSDLFGNDAWLTLVLGAAFVATFLLGVMLLSTRTKGQQRRSLATLMGRGGKKQEAKESSWIPAGMAEAGDRLATASGFSGR
Ga0364923_0051404_1_171	3300034690	Sediment	MSDLFGNDAWLTLVLGAAFVATFLLAVMLLSTRTKGQQRRSLAGLMGRGKKDAASET
Ga0373958_0042926_3_119	3300034819	Rhizosphere Soil	MGDLFGNDAWLTLVLGAAFVATFLVAVLLLSTRTKGQQR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099252

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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