NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F099394

Metagenome / Metatranscriptome Family F099394

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099394
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 47 residues
Representative Sequence KSATIKTTTIWFFSDIGFSFLTASEVVLPLTEQQNPRKSGCFQETEVSSI
Number of Associated Samples 89
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 3.88 %
% of genes near scaffold ends (potentially truncated) 93.20 %
% of genes from short scaffolds (< 2000 bps) 94.17 %
Associated GOLD sequencing projects 88
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (88.350 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog
(15.534 % of family members)
Environment Ontology (ENVO) Unclassified
(38.835 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(38.835 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 50.00%    Coil/Unstructured: 50.00%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF04335VirB8 1.94
PF12846AAA_10 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG3736Type IV secretory pathway, component VirB8Intracellular trafficking, secretion, and vesicular transport [U] 1.94


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A88.35 %
All OrganismsrootAll Organisms11.65 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001159|JGI12650J13346_1004788Not Available636Open in IMG/M
3300001593|JGI12635J15846_10082702All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2345Open in IMG/M
3300002245|JGIcombinedJ26739_101440818Not Available583Open in IMG/M
3300004092|Ga0062389_103319049Not Available603Open in IMG/M
3300004139|Ga0058897_10055727Not Available795Open in IMG/M
3300005568|Ga0066703_10703969Not Available581Open in IMG/M
3300005591|Ga0070761_10478209Not Available766Open in IMG/M
3300006086|Ga0075019_10000732All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia18602Open in IMG/M
3300006086|Ga0075019_10148325Not Available1370Open in IMG/M
3300006162|Ga0075030_100282859Not Available1327Open in IMG/M
3300006354|Ga0075021_11170651Not Available504Open in IMG/M
3300006797|Ga0066659_11710155Not Available531Open in IMG/M
3300009038|Ga0099829_11105526Not Available657Open in IMG/M
3300009147|Ga0114129_13525582Not Available500Open in IMG/M
3300009518|Ga0116128_1067748Not Available1095Open in IMG/M
3300009638|Ga0116113_1101220Not Available696Open in IMG/M
3300009644|Ga0116121_1087131Not Available977Open in IMG/M
3300009645|Ga0116106_1238261Not Available578Open in IMG/M
3300009683|Ga0116224_10060341All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1850Open in IMG/M
3300009698|Ga0116216_10555606Not Available692Open in IMG/M
3300009700|Ga0116217_10615796Not Available675Open in IMG/M
3300009762|Ga0116130_1069580Not Available1105Open in IMG/M
3300009764|Ga0116134_1076866Not Available1232Open in IMG/M
3300009824|Ga0116219_10840820Not Available500Open in IMG/M
3300010379|Ga0136449_101403371Not Available1078Open in IMG/M
3300010379|Ga0136449_101431119Not Available1064Open in IMG/M
3300010396|Ga0134126_11045093Not Available913Open in IMG/M
3300012203|Ga0137399_10531929Not Available987Open in IMG/M
3300012208|Ga0137376_10135145All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2114Open in IMG/M
3300012923|Ga0137359_11442009Not Available576Open in IMG/M
3300014152|Ga0181533_1099068Not Available1304Open in IMG/M
3300014155|Ga0181524_10183434Not Available1043Open in IMG/M
3300014159|Ga0181530_10343469Not Available772Open in IMG/M
3300014160|Ga0181517_10141757Not Available1358Open in IMG/M
3300014160|Ga0181517_10331548Not Available793Open in IMG/M
3300014161|Ga0181529_10089838All Organisms → cellular organisms → Bacteria → Acidobacteria1989Open in IMG/M
3300014161|Ga0181529_10580881Not Available586Open in IMG/M
3300014165|Ga0181523_10095343All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1792Open in IMG/M
3300014165|Ga0181523_10183728Not Available1216Open in IMG/M
3300014165|Ga0181523_10462840Not Available702Open in IMG/M
3300014169|Ga0181531_10156130All Organisms → cellular organisms → Bacteria → Acidobacteria1381Open in IMG/M
3300014199|Ga0181535_10602259Not Available630Open in IMG/M
3300014200|Ga0181526_10667196Not Available656Open in IMG/M
3300014491|Ga0182014_10118227All Organisms → cellular organisms → Bacteria → Acidobacteria1556Open in IMG/M
3300014491|Ga0182014_10165101Not Available1232Open in IMG/M
3300014491|Ga0182014_10218862Not Available1018Open in IMG/M
3300014492|Ga0182013_10137039Not Available1569Open in IMG/M
3300014492|Ga0182013_10453238Not Available677Open in IMG/M
3300014493|Ga0182016_10083866All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2312Open in IMG/M
3300014501|Ga0182024_12769481Not Available523Open in IMG/M
3300014654|Ga0181525_10139624All Organisms → cellular organisms → Bacteria → Acidobacteria1330Open in IMG/M
3300014654|Ga0181525_10840884Not Available519Open in IMG/M
3300014658|Ga0181519_10556549Not Available707Open in IMG/M
3300014838|Ga0182030_11540661Not Available547Open in IMG/M
3300014839|Ga0182027_10367785Not Available1607Open in IMG/M
3300017935|Ga0187848_10217070Not Available817Open in IMG/M
3300017948|Ga0187847_10458743Not Available704Open in IMG/M
3300017948|Ga0187847_10586964Not Available622Open in IMG/M
3300017955|Ga0187817_10734987Not Available630Open in IMG/M
3300018008|Ga0187888_1070763Not Available1543Open in IMG/M
3300018009|Ga0187884_10201887Not Available820Open in IMG/M
3300018022|Ga0187864_10210830Not Available914Open in IMG/M
3300018023|Ga0187889_10228761Not Available844Open in IMG/M
3300018034|Ga0187863_10250814Not Available984Open in IMG/M
3300018037|Ga0187883_10483459Not Available638Open in IMG/M
3300018044|Ga0187890_10464766Not Available710Open in IMG/M
3300018047|Ga0187859_10620052Not Available610Open in IMG/M
3300018057|Ga0187858_10217316Not Available1240Open in IMG/M
3300020583|Ga0210401_10822305Not Available788Open in IMG/M
3300021405|Ga0210387_11191326Not Available662Open in IMG/M
3300021407|Ga0210383_10903239Not Available752Open in IMG/M
3300021477|Ga0210398_10943900Not Available690Open in IMG/M
3300025928|Ga0207700_11435398Not Available613Open in IMG/M
3300026508|Ga0257161_1127567Not Available534Open in IMG/M
3300027745|Ga0209908_10181634Not Available568Open in IMG/M
3300027768|Ga0209772_10256434Not Available555Open in IMG/M
3300027855|Ga0209693_10023442All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2983Open in IMG/M
3300027867|Ga0209167_10546142Not Available635Open in IMG/M
3300027884|Ga0209275_10525430Not Available676Open in IMG/M
3300028746|Ga0302233_10083817Not Available1269Open in IMG/M
3300028882|Ga0302154_10173544Not Available1111Open in IMG/M
3300029882|Ga0311368_10662431Not Available726Open in IMG/M
3300029883|Ga0311327_10264427Not Available1137Open in IMG/M
3300030041|Ga0302274_10421736Not Available590Open in IMG/M
3300030051|Ga0302195_10099406Not Available1461Open in IMG/M
3300030054|Ga0302182_10110637Not Available1203Open in IMG/M
3300030509|Ga0302183_10112608Not Available1071Open in IMG/M
3300030739|Ga0302311_10257401Not Available1289Open in IMG/M
3300030842|Ga0075404_11417890Not Available695Open in IMG/M
3300031018|Ga0265773_1013871Not Available724Open in IMG/M
3300031446|Ga0170820_10810644Not Available732Open in IMG/M
3300031524|Ga0302320_11584906Not Available638Open in IMG/M
3300031708|Ga0310686_114296247Not Available539Open in IMG/M
3300031708|Ga0310686_116337670Not Available1334Open in IMG/M
3300031715|Ga0307476_11159041Not Available566Open in IMG/M
3300031754|Ga0307475_10290603Not Available1311Open in IMG/M
3300031823|Ga0307478_11651549Not Available528Open in IMG/M
3300032783|Ga0335079_12170903Not Available530Open in IMG/M
3300032892|Ga0335081_11474152Not Available755Open in IMG/M
3300032892|Ga0335081_12363566Not Available554Open in IMG/M
3300032892|Ga0335081_12507328Not Available532Open in IMG/M
3300033823|Ga0334837_021437All Organisms → cellular organisms → Bacteria2322Open in IMG/M
3300033983|Ga0371488_0242432Not Available886Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog15.53%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland11.65%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog6.80%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland5.83%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil5.83%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil5.83%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa4.85%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog4.85%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds3.88%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil3.88%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil3.88%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil3.88%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.91%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.91%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil2.91%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.94%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.97%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.97%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.97%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.97%
Thawing PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost0.97%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen0.97%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.97%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.97%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.97%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.97%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.97%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001159Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004139Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300006086Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006354Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009518Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150EnvironmentalOpen in IMG/M
3300009638Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10EnvironmentalOpen in IMG/M
3300009644Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10EnvironmentalOpen in IMG/M
3300009645Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40EnvironmentalOpen in IMG/M
3300009683Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaGEnvironmentalOpen in IMG/M
3300009698Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaGEnvironmentalOpen in IMG/M
3300009700Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaGEnvironmentalOpen in IMG/M
3300009762Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40EnvironmentalOpen in IMG/M
3300009764Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40EnvironmentalOpen in IMG/M
3300009824Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaGEnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300014152Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaGEnvironmentalOpen in IMG/M
3300014155Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaGEnvironmentalOpen in IMG/M
3300014159Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaGEnvironmentalOpen in IMG/M
3300014160Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaGEnvironmentalOpen in IMG/M
3300014161Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaGEnvironmentalOpen in IMG/M
3300014165Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaGEnvironmentalOpen in IMG/M
3300014169Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaGEnvironmentalOpen in IMG/M
3300014199Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaGEnvironmentalOpen in IMG/M
3300014200Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaGEnvironmentalOpen in IMG/M
3300014491Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaGEnvironmentalOpen in IMG/M
3300014492Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaGEnvironmentalOpen in IMG/M
3300014493Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014654Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaGEnvironmentalOpen in IMG/M
3300014658Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaGEnvironmentalOpen in IMG/M
3300014838Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014839Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300017935Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40EnvironmentalOpen in IMG/M
3300017948Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300018008Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40EnvironmentalOpen in IMG/M
3300018009Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40EnvironmentalOpen in IMG/M
3300018022Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40EnvironmentalOpen in IMG/M
3300018023Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100EnvironmentalOpen in IMG/M
3300018034Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10EnvironmentalOpen in IMG/M
3300018037Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10EnvironmentalOpen in IMG/M
3300018044Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10EnvironmentalOpen in IMG/M
3300018047Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10EnvironmentalOpen in IMG/M
3300018057Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150EnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026508Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-AEnvironmentalOpen in IMG/M
3300027745Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2MEnvironmentalOpen in IMG/M
3300027768Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027867Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300028746Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1EnvironmentalOpen in IMG/M
3300028882Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3EnvironmentalOpen in IMG/M
3300029882III_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300029883I_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300030041Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_1EnvironmentalOpen in IMG/M
3300030051Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_2EnvironmentalOpen in IMG/M
3300030054Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1EnvironmentalOpen in IMG/M
3300030509Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2EnvironmentalOpen in IMG/M
3300030739Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3EnvironmentalOpen in IMG/M
3300030842Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB3 SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031018Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031446Fir Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031524Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300033823Peat soil microbial communities from Stordalen Mire, Sweden - 714 S3 30-34EnvironmentalOpen in IMG/M
3300033983Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fractionEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12650J13346_100478813300001159Forest SoilKSATIKTTTIWFFSDIGFSFLTASEVVLPLTEQQNPRKSGCFQETEVSSI*
JGI12635J15846_1008270213300001593Forest SoilIGFSFLTASEVVLPLTEQQNPRKSGCFQETAVSSI*
JGIcombinedJ26739_10144081823300002245Forest SoilEKERHDQDHDIWFFSDIGFSFLTASEVVLPLTERQNPRKSGCFQETEVSSI*
Ga0062389_10331904913300004092Bog Forest SoilMNAPSKSATIKTTTIWFLSDIGFSFLTASEVALALTEQQNPRKSGCFKETEVS
Ga0058897_1005572733300004139Forest SoilSATIKTTTIWFFSDIGFSFLTASEVVLHPTEQQSPRKSGCFQETEVSSI*
Ga0066703_1070396913300005568SoilNAPRKSATIKTTTIWFFSDIGFSFLTASEVVLHPTEQQSPRKSGCFQETEVSSI*
Ga0070761_1047820933300005591SoilTNAPRKSATIKTTTIWFFSDIGFSFLTASEVVLPLTERQNPRKSGCFQETEVSSI*
Ga0075019_10000732253300006086WatershedsLSDIGFSFLTASEVGLPFYGQQNPRKSGCFKETEVSFV*
Ga0075019_1014832513300006086WatershedsATIKTTTIWFFSDIGFSFLTASEVVPPLTEQQNPRKSGCFQETEVSSI*
Ga0075030_10028285913300006162WatershedsSDIGFSFLTASEVVLPLREQQNPRKSGCFQETEVSSI*
Ga0075021_1117065123300006354WatershedsTNAPRKSATIKTTTIWFFSDIGFSFLTASEGVLPLREQQNPRKSGCFQETEVSSI*
Ga0066659_1171015513300006797SoilHDQDHDNLFFSDIGFSFLTASEVVLHPTEQQSPRKSGCFQETEVSSI*
Ga0099829_1110552613300009038Vadose Zone SoilIGFSFLTASEVVLHPTEQHSPRKSGCFQETEVSSI*
Ga0114129_1352558223300009147Populus RhizosphereVLLSINAPRESATIKTTTIWFFSDIGFSFLTASEVVPPLKEQQSPRKSGCFQETEVSSI*
Ga0116128_106774813300009518PeatlandSATIKTTTTWFLSDMSFSFLTASEVALPLTEQQNPRKSGCFKETEVSLI*
Ga0116113_110122013300009638PeatlandTTIWFFSDIGFSFLTASEVVLHPTEQQSPRKSGCFQETEVSSI*
Ga0116121_108713133300009644PeatlandMSATIKTTTIWFLSDIGFSFLTASEVVPPLTEQQSPRKSGCFKETEVSFV*
Ga0116106_123826123300009645PeatlandPRKSATIKTTTIWFFSDIGFSFLTASEVVLPLTERQNPRKSGCFQETEVSSI*
Ga0116224_1006034153300009683Peatlands SoilMSATIKTTTIWFLSDIGFSFLTASEVVPPLTEQQSPRKSGCFQETEVSSI*
Ga0116216_1055560613300009698Peatlands SoilTTIWFFSDIGFSFLTASEGVLPLREQQNPRKSGCFQETKVSSI*
Ga0116217_1061579613300009700Peatlands SoilGFSFLTASEVVLHPTEQQSPRKSGCFQETEVSSI*
Ga0116130_106958043300009762PeatlandFFSDIGFSFLTASEVVLHPTEQQSPRKSGCFQETEVSSI*
Ga0116134_107686633300009764PeatlandMSFYFLTASEVALPLAEQQNPRKSGCFKETKVSII*
Ga0116219_1084082023300009824Peatlands SoilSTNAPRKSATIKTTTIWFFSDIGFSFLTASEVVLPLREQQNPRKSGCFQETEVSSI*
Ga0136449_10140337113300010379Peatlands SoilATIFSAVLRSINAPRKSATIKTTTIWFFSDIGFSFLTASEGVLPLREQQNPRKSGCFQETEVSSI*
Ga0136449_10143111913300010379Peatlands SoilATIFSAVLRSINAPRKSATIKTTTIWFFSDIGFSFLTASEVVLPLREQQNPRKSGCFQETEVSSI*
Ga0134126_1104509333300010396Terrestrial SoilIWFFSDIGFSFLTASEVVLHPTEQQSPRKSGCFQETEVSSI*
Ga0137399_1053192933300012203Vadose Zone SoilSATIKTTTIWFFSDIGFSFLTASEVVLPLKEQQSPRKSGCFQETEVSST*
Ga0137376_1013514513300012208Vadose Zone SoilTTTIWFFSDIGFSFLTASEVVLPLKEQQNPRKSGCFQETEVSSI*
Ga0137359_1144200923300012923Vadose Zone SoilAVLRSTNAPRKSATIKTTTIWFFSDIGFSFLTASEVLLPLREQQNPRKSGCFQETEVSSI
Ga0181533_109906843300014152BogAPSMSATIKTTTIWFLSDIGFSFLTASEVVPPLTEQQSPRKSGCFKETEVSFV*
Ga0181524_1018343423300014155BogMIKTTTIWFLSDIGFSFLTASEVVPPLTEQQSPRKSGCFKETEVSFV*
Ga0181530_1034346913300014159BogAPSKSATIKTTTIWFLSDMSFSFLTASEVALPLAEQQNPRKSGCFKETEVSII*
Ga0181517_1014175733300014160BogMSATIKTTTIWFLSDIGFSFLTASEVVPPLTEQHSPRKSGCFKETEVSSV*
Ga0181517_1033154833300014160BogTTTWFLSDMSFSFLTASEVALPLTEQQNPRKSGCFKETKVSII*
Ga0181529_1008983823300014161BogMSATIKTTTIWFLSDIGFSFLTASEVVPPLTEQQSPRKSGCFKETEVSSV*
Ga0181529_1058088123300014161BogRSINAPRKSATIKTTTIWFFSDIGFSFLTASEVVLPLREQQNPRKSGCFQETEVSSI*
Ga0181523_1009534353300014165BogKSATIKTTTTWFLSDMSFSFLTASEVALPLTEQQNPRKSGCFKETEVSLI*
Ga0181523_1018372843300014165BogAVLRSINAPRKSATIKTTTIWFFSDIGFSFLTASEVVLPLREQQNPRKSGCFQETEVSSI
Ga0181523_1046284033300014165BogAVLRSINAPRKSATIKTTTIWFFSDIGFSFLTASEVVLPLTERQNPRKSGCFQETEVSSI
Ga0181531_1015613013300014169BogMNAPSKSATIKTTTIWFLSDIGFSFLTASEVALALTEQQNPRKSGCFKETEVSIVKKPDY
Ga0181535_1060225913300014199BogSKSATIKTTTTWFLSDMSFSFLTASEGALPLTEQQNPRKSGCFKETKVSII*
Ga0181526_1066719633300014200BogRSTNAPSKSATIKTTTTWFLSDMSFSFLTASEVALPLTEQQNPRKSGCFKETEVSII*
Ga0182014_1011822713300014491BogTTTWFLSDMSFSFLTASEVALPLSEQQNPRKSGCFKETEVSII*
Ga0182014_1016510143300014491BogWFLSDIGFSFLTASEVVPPLTEQQSPRKSGCFKETEVSFV*
Ga0182014_1021886213300014491BogTTTWFLSDMSFSFLTASEVALPLSEQQNPRKSGCFKETEVSLV*
Ga0182013_1013703913300014492BogNAPSKSATIKTTTTWFLSDMSFSFLTASEVALPLSEQQNPRKSGCFKETEVSII*
Ga0182013_1045323813300014492BogAVLRSTNAPSKSATIKTTTTWFLSDMSFSFLTASEVALPLAEQQNPRKSGCFKETEVSLV
Ga0182016_1008386663300014493BogFSDIGFSFLTASEVVLPPTEQQNPRKSGCFQETEVSSI*
Ga0182024_1276948123300014501PermafrostNAPRKSATIKTTTIWFFSDIGFSFLTASEVVLPLREQQNPRKSGCFQETEVSSI*
Ga0181525_1013962423300014654BogMNAPSKSATIKTTTIWFLSDIGFSFLTASEVALALTEQQNP
Ga0181525_1084088423300014654BogFSDIGFSFLTASEVVLPLTEQQNPRKSGCFQETEVSSI*
Ga0181519_1055654913300014658BogWFRSDMSFSFLTASEVALPLTEQQNPRKSGCFKETEVSII*
Ga0182030_1154066113300014838BogKAVLRSTNAPSKSATIKTTTTWFLSDMSFSFLTASEVALPLAEQQNPRKSGCFKETEVSLV*
Ga0182027_1036778553300014839FenFKAVLRSTNAPSKSATIKTTTTWFLSDMSFSFLTASEVALPLTEQQNPRKSGCFKETEVSLV*
Ga0187848_1021707013300017935PeatlandTTWFLSDMSFSFLTASEVALPLAEQQNPRKSGCFKETEVSLV
Ga0187847_1045874313300017948PeatlandTSATIKTTTIWFFSDIGFSFLTASEVVPPLKEQQSPRKSGCFQETEVSSN
Ga0187847_1058696423300017948PeatlandRSTNAPSKSATIKTTTTWFLSDMSFSFLTASEVALPLAEQQNPRKSGCFKETEVSLI
Ga0187817_1073498713300017955Freshwater SedimentTTIWFLSDIGFSFLTASEVVPPLTEQQSPRKSGCFKETEVSFV
Ga0187888_107076313300018008PeatlandTTWFLSDMSFSFLTASEVALPLAEQQNPRKSGCFKETEVSLI
Ga0187884_1020188713300018009PeatlandMSATIKTTTIWFLSDIGFSFLTASEVVPPLTEQQSPRQSGCFKETE
Ga0187864_1021083033300018022PeatlandKTTTTWFLSDMSFSFLTASEVALPLTEQQNPRKSGCFKETEVSII
Ga0187889_1022876133300018023PeatlandFSDIGFSFLTASEVVLPLREQQNPRKSGCFQETEVSSI
Ga0187863_1025081413300018034PeatlandSDIGFSFLTASEVLLRPTEQQSPRKSGCFQETEVSSI
Ga0187883_1048345913300018037PeatlandTIKTTTTWFLSDMSFSFLTASEVALPLAEQQNPRKSGCFKETEVSLI
Ga0187890_1046476613300018044PeatlandAPRKSATIKTTTIWFFSDIGFSFLTASEVVLPLTEQQNPRKSGCFQETEVSSI
Ga0187859_1062005223300018047PeatlandRKSATIKTTTIWFFSDIGFSFLTASEVLLRPTEQQSPRKSGCFQETEVSSN
Ga0187858_1021731643300018057PeatlandLSDMSFSFLTASEVALPLAEQQNPRKSGCFKETKVSII
Ga0210401_1082230513300020583SoilRKSAAIKTTTIWFFSDIAFSFLTASEGVLHPTEQQSPRKSGCFQETEVSSI
Ga0210387_1119132613300021405SoilTINTMTVWFFSDIGFSFLTASEVVLPLTEQQNPRKSGCFQETEVSSI
Ga0210383_1090323913300021407SoilNAPRKSATIKTTTIWFFSDIGFSFLTASEVVLPLTEQQNPRKSGCFQETEVSSI
Ga0210398_1094390013300021477SoilSDIDFSFLTASEVGLPLVAQQSPRKSGCFKETEVSFV
Ga0207700_1143539833300025928Corn, Switchgrass And Miscanthus RhizosphereRKSATIKTTTIWFFSDIGFSFLTASEVVLHPTEQQSPRKSGCFQETEVSSI
Ga0257161_112756723300026508SoilFSDIGFSFLTASEVVPPLEEQQSPRKSGCFQETEVSSI
Ga0209908_1018163413300027745Thawing PermafrostVIRSTKAARKSATIKTTTIWFFSDIGFSFLTASEVVLPLTEQQNPRKSGCFQETEVSSI
Ga0209772_1025643423300027768Bog Forest SoilWFFSDIDFSFLTASEVALSPVEQQSPRKSGCFKETEVSFV
Ga0209693_1002344213300027855SoilSTNAPRKSATIKTTTIWFFSDIGFSFLTASEVVLPLTEQQNPRKSGCFQETEVSSI
Ga0209167_1054614233300027867Surface SoilTTTIWFFSDIGFSFLTASEVVLPLTEQQNPRKSGCFQETEVSSI
Ga0209275_1052543033300027884SoilIKTTTIWFFSDIDFSFLTASEVALSPVEQQSPRKSGCFKETEVSFV
Ga0302233_1008381713300028746PalsaSDIGFSFLTASEVVLPLTEQQNPRKSGCFQETEVSSI
Ga0302154_1017354413300028882BogTTTTWFLSDMSFSFLTASEVALPLSEQQNPRKSGCFKETEVSLI
Ga0311368_1066243133300029882PalsaPRKSATIKTTTIWFFSDIGFSFLTASEVVLPLTEQQNPRKSGCFQETEVSSI
Ga0311327_1026442743300029883BogDIGFSFLTTSEVVLPLTERQNPRKSGCFQETEVSSI
Ga0302274_1042173613300030041BogSDMSFSFLTASEVALPISEQQNPRKSGCFKETEVSLI
Ga0302195_1009940613300030051BogWFLSDMSFSFLTASEVALPLSEQQNPRKSGCFKETEVSII
Ga0302182_1011063743300030054PalsaFSDIGFSFLTTSEVVLPLTERQNPRKSGCFQETEVSSI
Ga0302183_1011260813300030509PalsaAPRKSATIKTTTFWFFSDIGFSFLTTSEVVLPLTERQNPRKSGCFQETEVSSI
Ga0302311_1025740113300030739PalsaKTTTIWFFSDIGFSFLTASEVVLPLTEQQNPRKSGCFQETEVSSI
Ga0075404_1141789013300030842SoilAPRKSATIKTTTIWFFSDIGFSFLTASEVVLRPTEQQSPRKSGCFQETEVSSI
Ga0265773_101387113300031018SoilTIWFFSDIGFSFLTASEVVLPLREQQNPRKSGCFQETEVSSI
Ga0170820_1081064413300031446Forest SoilSATIKTTTIWFFSDIGFSFLTASEVVLHPTEQQSPRKSGCFQETEVSSI
Ga0302320_1158490613300031524BogIGFSFLTASEVVPPLTEQQSPRKSGCFKETEVSFV
Ga0310686_11429624713300031708SoilWFFSDIGFSFLTASEVAPPLKEQQSPRKSGCFQETEVSSI
Ga0310686_11633767013300031708SoilAPRTSATIKTTTIWFFSDIGFSFLTASEVLLRPTEQQSPRKSGCFQETEVSSN
Ga0307476_1115904113300031715Hardwood Forest SoilIKTTTAWFFSDIGFSFLTASEVVLHPKEQQSPRKSGCFQETEVSSI
Ga0307475_1029060313300031754Hardwood Forest SoilIKTTTVWFFSDIGFSFLTASEVVLHPKEQQSPRKSGCFQETEVSSI
Ga0307478_1165154923300031823Hardwood Forest SoilTTTIWFFSDIGFSFLTASEVVLHPKEQQSPRKSGCFQETEVSSI
Ga0335079_1217090313300032783SoilDKRPEKKSATIKTTTIWFFSDIGFSFLTASEVVLPQKEQQSPRKSGCFQETEVSYS
Ga0335081_1147415213300032892SoilKSATIKTTTIWFFSDIGFSFLTASEVVLHPTEQQSPRKSGCFQETEVSSI
Ga0335081_1236356613300032892SoilMSAPSKSATIKTTTIWFLSDIGFSFLTASEVVLTLTEQQSPRKSGCFKE
Ga0335081_1250732813300032892SoilTTIWFRSDIGFSFLTASEVVPSLTEQQSPRKSGCFKETEVSFV
Ga0334837_021437_815_9223300033823SoilMSFSFLTASEVALPISEQQNPRKSGCFKETEVSLI
Ga0371488_0242432_1_1353300033983Peat SoilTTTTWFLSDMSFSFLTASEVALPLTEQQNPRKSGCFKETEVSLV


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