Metagenome / Metatranscriptome Family F099429

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099429
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	49 residues
Representative Sequence	LLLTPFLLGNSAGALGALVPLVIGAVIGLAVIIGIVWGLIKWLT
Number of Associated Samples	60
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	58.82 %
% of genes near scaffold ends (potentially truncated)	15.53 %
% of genes from short scaffolds (< 2000 bps)	86.41 %
Associated GOLD sequencing projects	56
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (71.845 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (18.447 % of family members)
Environment Ontology (ENVO)	Unclassified (86.408 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (68.932 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.56% β-sheet: 0.00% Coil/Unstructured: 44.44%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF08291	Peptidase_M15_3	8.74
PF06941	NT5C	3.88
PF05488	PAAR_motif	2.91
PF13640	2OG-FeII_Oxy_3	2.91
PF02195	ParBc	2.91
PF06714	Gp5_OB	1.94
PF01521	Fe-S_biosyn	0.97
PF01812	5-FTHF_cyc-lig	0.97
PF02775	TPP_enzyme_C	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG4502	5'(3')-deoxyribonucleotidase	Nucleotide transport and metabolism [F]	3.88
COG4104	Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion	Intracellular trafficking, secretion, and vesicular transport [U]	2.91
COG0212	5-formyltetrahydrofolate cyclo-ligase	Coenzyme transport and metabolism [H]	0.97
COG0316	Fe-S cluster assembly iron-binding protein IscA	Posttranslational modification, protein turnover, chaperones [O]	0.97
COG4841	Uncharacterized conserved protein YneR, related to HesB/YadR/YfhF family	Function unknown [S]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.84 %
All Organisms	root	All Organisms	28.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.84 %
Viruses	superkingdom	All Organisms → Viruses	25.24 %
cellular organisms	root	All Organisms → cellular organisms	2.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.24 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.24 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %
Nitrospinae/Tectomicrobia group	clade	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.24 %
Nitrospinae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.24 %
Nitrospinia	class	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → Nitrospinia	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.24 %
Nitrospinales	order	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → Nitrospinia → Nitrospinales	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.24 %
Nitrospinaceae	family	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → Nitrospinia → Nitrospinales → Nitrospinaceae	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.24 %
Nitrospina	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → Nitrospinia → Nitrospinales → Nitrospinaceae → Nitrospina	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000142\|LPaug09P16500mDRAFT_c1033576	Not Available	789	Open in IMG/M
3300000222\|LPjun09P12500mDRAFT_1059750	Not Available	607	Open in IMG/M
3300000225\|SI34jun09_120mDRAFT_1043651	Not Available	919	Open in IMG/M
3300001683\|GBIDBA_10096660	Not Available	929	Open in IMG/M
3300001683\|GBIDBA_10101440	Not Available	890	Open in IMG/M
3300002177\|JGI24816J26688_1067746	Not Available	612	Open in IMG/M
3300002526\|JGI24818J35693_1005059	All Organisms → cellular organisms → Bacteria → Proteobacteria	2763	Open in IMG/M
3300002528\|JGI24819J35694_1013618	Not Available	1774	Open in IMG/M
3300003542\|FS900DNA_10103020	All Organisms → Viruses → Predicted Viral	1450	Open in IMG/M
3300003619\|JGI26380J51729_10081889	Not Available	747	Open in IMG/M
3300003978\|Ga0063038_103570	All Organisms → Viruses → Predicted Viral	4719	Open in IMG/M
3300003979\|Ga0063037_104629	All Organisms → Viruses → Predicted Viral	3968	Open in IMG/M
3300003981\|Ga0063042_125064	All Organisms → Viruses → Predicted Viral	1130	Open in IMG/M
3300005427\|Ga0066851_10035326	All Organisms → Viruses → Predicted Viral	1758	Open in IMG/M
3300006002\|Ga0066368_10094411	Not Available	1031	Open in IMG/M
3300006310\|Ga0068471_1477706	All Organisms → Viruses → Predicted Viral	1052	Open in IMG/M
3300006338\|Ga0068482_1155562	Not Available	773	Open in IMG/M
3300006338\|Ga0068482_1240253	Not Available	823	Open in IMG/M
3300006338\|Ga0068482_1296411	Not Available	885	Open in IMG/M
3300006338\|Ga0068482_1456984	Not Available	834	Open in IMG/M
3300006338\|Ga0068482_1685266	Not Available	761	Open in IMG/M
3300006339\|Ga0068481_1305914	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300006340\|Ga0068503_10112226	Not Available	544	Open in IMG/M
3300006340\|Ga0068503_10263054	Not Available	766	Open in IMG/M
3300006340\|Ga0068503_10393813	All Organisms → Viruses → Predicted Viral	1219	Open in IMG/M
3300006340\|Ga0068503_10395952	Not Available	1076	Open in IMG/M
3300006341\|Ga0068493_10128554	Not Available	512	Open in IMG/M
3300006900\|Ga0066376_10778547	Not Available	519	Open in IMG/M
3300006902\|Ga0066372_10064931	Not Available	1812	Open in IMG/M
3300006902\|Ga0066372_10100980	All Organisms → Viruses → Predicted Viral	1489	Open in IMG/M
3300006902\|Ga0066372_10190454	Not Available	1118	Open in IMG/M
3300006902\|Ga0066372_10325045	Not Available	874	Open in IMG/M
3300006902\|Ga0066372_10380358	Not Available	812	Open in IMG/M
3300007514\|Ga0105020_1007074	Not Available	12254	Open in IMG/M
3300007515\|Ga0105021_1029878	All Organisms → Viruses → Predicted Viral	4169	Open in IMG/M
3300007756\|Ga0105664_1134225	Not Available	547	Open in IMG/M
3300007758\|Ga0105668_1021652	Not Available	688	Open in IMG/M
3300017775\|Ga0181432_1101986	Not Available	855	Open in IMG/M
3300017775\|Ga0181432_1150370	Not Available	716	Open in IMG/M
3300017775\|Ga0181432_1159783	Not Available	696	Open in IMG/M
3300017775\|Ga0181432_1199918	Not Available	626	Open in IMG/M
3300017775\|Ga0181432_1283876	Not Available	524	Open in IMG/M
3300017775\|Ga0181432_1309207	Not Available	502	Open in IMG/M
3300020271\|Ga0211631_1127335	Not Available	505	Open in IMG/M
3300020383\|Ga0211646_10058358	All Organisms → Viruses → Predicted Viral	1456	Open in IMG/M
3300020383\|Ga0211646_10196786	Not Available	719	Open in IMG/M
3300020383\|Ga0211646_10313528	Not Available	554	Open in IMG/M
3300020389\|Ga0211680_10170569	Not Available	853	Open in IMG/M
3300020398\|Ga0211637_10336097	Not Available	599	Open in IMG/M
3300020399\|Ga0211623_10087872	All Organisms → Viruses → Predicted Viral	1066	Open in IMG/M
3300020399\|Ga0211623_10385603	Not Available	500	Open in IMG/M
3300020412\|Ga0211552_10296694	Not Available	590	Open in IMG/M
3300020426\|Ga0211536_10175659	Not Available	834	Open in IMG/M
3300020427\|Ga0211603_10036024	Not Available	1822	Open in IMG/M
3300020427\|Ga0211603_10150575	Not Available	864	Open in IMG/M
3300020434\|Ga0211670_10297178	Not Available	668	Open in IMG/M
3300020435\|Ga0211639_10141004	Not Available	1009	Open in IMG/M
3300020444\|Ga0211578_10099426	All Organisms → Viruses → Predicted Viral	1129	Open in IMG/M
3300020458\|Ga0211697_10099749	Not Available	1206	Open in IMG/M
3300021442\|Ga0206685_10008312	All Organisms → Viruses → Predicted Viral	3210	Open in IMG/M
3300021443\|Ga0206681_10054649	Not Available	1552	Open in IMG/M
3300021443\|Ga0206681_10390827	Not Available	536	Open in IMG/M
3300025547\|Ga0209556_1055615	Not Available	964	Open in IMG/M
3300025667\|Ga0209043_1032010	All Organisms → Viruses → Predicted Viral	1727	Open in IMG/M
3300026209\|Ga0207989_1042927	All Organisms → Viruses → Predicted Viral	1297	Open in IMG/M
3300027622\|Ga0209753_1030654	Not Available	1606	Open in IMG/M
3300027622\|Ga0209753_1092339	Not Available	749	Open in IMG/M
3300027630\|Ga0209432_1067886	All Organisms → Viruses → Predicted Viral	1040	Open in IMG/M
3300027630\|Ga0209432_1179370	Not Available	603	Open in IMG/M
3300027677\|Ga0209019_1017823	All Organisms → Viruses → Predicted Viral	2654	Open in IMG/M
3300027677\|Ga0209019_1035155	Not Available	1673	Open in IMG/M
3300027699\|Ga0209752_1018992	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → Nitrospinia → Nitrospinales → Nitrospinaceae → Nitrospina	2634	Open in IMG/M
3300028190\|Ga0257108_1164793	Not Available	640	Open in IMG/M
3300028192\|Ga0257107_1026934	All Organisms → Viruses → Predicted Viral	1828	Open in IMG/M
3300028192\|Ga0257107_1047368	Not Available	1331	Open in IMG/M
3300028487\|Ga0257109_1216255	Not Available	537	Open in IMG/M
3300028488\|Ga0257113_1189223	Not Available	606	Open in IMG/M
3300031757\|Ga0315328_10025303	Not Available	3186	Open in IMG/M
3300031801\|Ga0310121_10466045	Not Available	705	Open in IMG/M
3300031801\|Ga0310121_10533441	Not Available	645	Open in IMG/M
3300031861\|Ga0315319_10495787	Not Available	610	Open in IMG/M
3300031861\|Ga0315319_10634902	Not Available	526	Open in IMG/M
3300031886\|Ga0315318_10547981	Not Available	657	Open in IMG/M
3300032019\|Ga0315324_10094764	All Organisms → Viruses → Predicted Viral	1121	Open in IMG/M
3300032048\|Ga0315329_10033941	All Organisms → Viruses → Predicted Viral	2419	Open in IMG/M
3300032048\|Ga0315329_10084768	All Organisms → Viruses → Predicted Viral	1588	Open in IMG/M
3300032048\|Ga0315329_10263063	Not Available	913	Open in IMG/M
3300032048\|Ga0315329_10403709	Not Available	728	Open in IMG/M
3300032278\|Ga0310345_10027383	All Organisms → Viruses → Predicted Viral	4788	Open in IMG/M
3300032278\|Ga0310345_10084794	Not Available	2745	Open in IMG/M
3300032278\|Ga0310345_10104067	All Organisms → Viruses → Predicted Viral	2487	Open in IMG/M
3300032278\|Ga0310345_10357481	All Organisms → Viruses → Predicted Viral	1368	Open in IMG/M
3300032278\|Ga0310345_10708014	Not Available	976	Open in IMG/M
3300032278\|Ga0310345_11357614	Not Available	695	Open in IMG/M
3300032360\|Ga0315334_10623670	Not Available	931	Open in IMG/M
3300032360\|Ga0315334_11149187	Not Available	671	Open in IMG/M
3300032360\|Ga0315334_11490325	Not Available	580	Open in IMG/M
3300032360\|Ga0315334_11676451	Not Available	542	Open in IMG/M
3300032820\|Ga0310342_100414617	All Organisms → Viruses → Predicted Viral	1474	Open in IMG/M
3300032820\|Ga0310342_100861945	All Organisms → Viruses → Predicted Viral	1053	Open in IMG/M
3300032820\|Ga0310342_101934944	Not Available	705	Open in IMG/M
3300032820\|Ga0310342_101979319	Not Available	697	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	50.49%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	19.42%
Unclassified	Environmental → Aquatic → Marine → Unclassified	15.53%
Strait	Environmental → Aquatic → Marine → Strait	6.80%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	5.83%
Coastal	Environmental → Aquatic → Marine → Coastal	1.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	34.95%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	19.42%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	15.53%
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	13.59%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	6.80%
Diffuse Flow	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow	3.88%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	1.94%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified	1.94%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	18.45%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	15.53%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	15.53%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	11.65%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	9.71%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	6.80%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	6.80%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	3.88%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	1.94%
Background Seawater	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater	1.94%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	1.94%
Diffuse Hydrothermal Vent	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Vent	1.94%
Hydrothermal Vent Plume	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume	1.94%
Diffuse Hydrothermal Flow Volcanic Vent	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent	0.97%
Diffuse Hydrothermal Vent	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Vent	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000142	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 500m	Environmental	Open in IMG/M
3300000222	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P12 500m	Environmental	Open in IMG/M
3300000225	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 120m	Environmental	Open in IMG/M
3300001683	Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly	Environmental	Open in IMG/M
3300002177	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_250m	Environmental	Open in IMG/M
3300002526	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_550m	Environmental	Open in IMG/M
3300002528	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_800m	Environmental	Open in IMG/M
3300003542	Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS900_Dependable_DNA	Environmental	Open in IMG/M
3300003619	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_165m_DNA	Environmental	Open in IMG/M
3300003978	Diffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge - MGW_C	Environmental	Open in IMG/M
3300003979	Diffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge - MGW_B	Environmental	Open in IMG/M
3300003981	Diffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge - MGW_A	Environmental	Open in IMG/M
3300005427	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65	Environmental	Open in IMG/M
3300006002	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_NADW_ad_2505m_LV_A	Environmental	Open in IMG/M
3300006310	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m	Environmental	Open in IMG/M
3300006338	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_0770m	Environmental	Open in IMG/M
3300006339	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500m	Environmental	Open in IMG/M
3300006340	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m	Environmental	Open in IMG/M
3300006341	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT236_2_0770m	Environmental	Open in IMG/M
3300006900	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A	Environmental	Open in IMG/M
3300006902	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_A	Environmental	Open in IMG/M
3300007514	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a	Environmental	Open in IMG/M
3300007515	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate b	Environmental	Open in IMG/M
3300007756	Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDBack_2015_DNA CLC_assembly	Environmental	Open in IMG/M
3300007758	Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDPlume_2015_DNA CLC_assembly	Environmental	Open in IMG/M
3300017775	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17	Environmental	Open in IMG/M
3300020271	Marine microbial communities from Tara Oceans - TARA_B100000678 (ERX556013-ERR599096)	Environmental	Open in IMG/M
3300020383	Marine microbial communities from Tara Oceans - TARA_B100000929 (ERX556043-ERR598971)	Environmental	Open in IMG/M
3300020389	Marine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008)	Environmental	Open in IMG/M
3300020398	Marine microbial communities from Tara Oceans - TARA_B100000949 (ERX555993-ERR599072)	Environmental	Open in IMG/M
3300020399	Marine microbial communities from Tara Oceans - TARA_B100000470 (ERX555969-ERR598947)	Environmental	Open in IMG/M
3300020412	Marine microbial communities from Tara Oceans - TARA_B100001167 (ERX556053-ERR599047)	Environmental	Open in IMG/M
3300020426	Marine microbial communities from Tara Oceans - TARA_B100000378 (ERX555992-ERR599112)	Environmental	Open in IMG/M
3300020427	Marine microbial communities from Tara Oceans - TARA_B000000460 (ERX555922-ERR598960)	Environmental	Open in IMG/M
3300020434	Marine microbial communities from Tara Oceans - TARA_B100001013 (ERX555944-ERR599071)	Environmental	Open in IMG/M
3300020435	Marine microbial communities from Tara Oceans - TARA_B100000586 (ERX556070-ERR599086)	Environmental	Open in IMG/M
3300020444	Marine microbial communities from Tara Oceans - TARA_B100001245 (ERX556114-ERR598980)	Environmental	Open in IMG/M
3300020458	Marine microbial communities from Tara Oceans - TARA_B100000749 (ERX556123-ERR599000)	Environmental	Open in IMG/M
3300021442	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015	Environmental	Open in IMG/M
3300021443	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 12015	Environmental	Open in IMG/M
3300025547	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_150m_DNA (SPAdes)	Environmental	Open in IMG/M
3300025667	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_100m_DNA (SPAdes)	Environmental	Open in IMG/M
3300026209	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65 (SPAdes)	Environmental	Open in IMG/M
3300027622	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_550m (SPAdes)	Environmental	Open in IMG/M
3300027630	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_800m (SPAdes)	Environmental	Open in IMG/M
3300027677	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_300m (SPAdes)	Environmental	Open in IMG/M
3300027699	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_250m (SPAdes)	Environmental	Open in IMG/M
3300028190	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_1000m	Environmental	Open in IMG/M
3300028192	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m	Environmental	Open in IMG/M
3300028487	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_2000m	Environmental	Open in IMG/M
3300028488	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1320m	Environmental	Open in IMG/M
3300031757	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315	Environmental	Open in IMG/M
3300031801	Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986	Environmental	Open in IMG/M
3300031861	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 3416	Environmental	Open in IMG/M
3300031886	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 3416	Environmental	Open in IMG/M
3300032019	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 21515	Environmental	Open in IMG/M
3300032048	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 32315	Environmental	Open in IMG/M
3300032278	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG	Environmental	Open in IMG/M
3300032360	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915	Environmental	Open in IMG/M
3300032820	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MG	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
LPaug09P16500mDRAFT_10335761	3300000142	Marine	MKLLLFVPFLLGNSAGGLAGLGALVVAGIIGLGAIIAVIWGLIKWLA*
LPjun09P12500mDRAFT_10597502	3300000222	Marine	MTKYLLPLIPFLLGNSAGAAGAMAELFIIAAVGLAIIIGI
SI34jun09_120mDRAFT_10436512	3300000225	Marine	MKLLLLTPFLLGNSAPVGALIPLLLGGLLGLGVIIGIIWAVIKWLS*
GBIDBA_100966601	3300001683	Hydrothermal Vent Plume	MKHPERLFILLLLSLIFLLGNSAGGLAGLGALVIGAVIGLGAIIAIIWGLIKWLA*
GBIDBA_101014401	3300001683	Hydrothermal Vent Plume	MKILLLVPFLLGNSAGGLAGLGALVIGAVIGLGAIIAIIWGLIKWLA*
JGI24816J26688_10677463	3300002177	Marine	MTKYLLPLIPFLLGNSAGAVGAMTTVFILAAIALAIIIGIIWGLIKWLS*
JGI24818J35693_10050598	3300002526	Marine	IIWSKTMTKYLLPLIPFLLGNSAGAMGAMVELFIIAAVGLAIIIGIIWGLIKWLS*
JGI24819J35694_10136182	3300002528	Marine	MTKYLLPLIPFLLGNSAGAMGAMVELFIIAAVGLAIIIGIIWGLIKWLS*
FS900DNA_101030201	3300003542	Diffuse Hydrothermal Flow Volcanic Vent	MKYLLALTPFLLGNSAGAIGPLVSLFIGAVIGLTVIIGIIWF
JGI26380J51729_100818891	3300003619	Marine	MKSLLFVPFILGNSAPVGALIPLLLGGLLGLGVIIGIIWAVIKWLS*
Ga0063038_1035701	3300003978	Diffuse Hydrothermal Vent	MNKLLLLLIPFLLGNSAGGLGGLVILAGGAIIGLGVIIGIVWGLIRWLT*
Ga0063037_10462910	3300003979	Diffuse Hydrothermal Vent	MNKLLLLLIPFLLGNSAGGLGGLVILAGGAIIGLGVIIGIIWGLIKWLT*
Ga0063042_1250642	3300003981	Diffuse Hydrothermal Vent	MKTLLVAITTPFLLGNSAGALGALVPLLIGAAIGLAVIIGIVWGLIKWLT*
Ga0066851_100353265	3300005427	Marine	MKLLLLTPFLLGNSAPVGALIPLLLGGLLGLGVIIGIIWAVIKWLSS*
Ga0066368_100944115	3300006002	Marine	MKYLLALTPFLLGNSAGAIGALTSLFIGAVIAVVVVGVIIWFIIKWVT*
Ga0068471_14777062	3300006310	Marine	MNKLFVAITTPFLLGNSAGALGALVPLLIGAVFGLAVIIGIVYGLVKWLT*
Ga0068482_11555622	3300006338	Marine	MNRLILITLLAIFTLGNSAGGLGGLVFLAGGAIIGLGVIIGIIWGLIKWLS*
Ga0068482_12402532	3300006338	Marine	MKTLILLTIPFLLGNSAGGLGGLVFLAGGAIIGLGVIIGIIWGLIKWLT*
Ga0068482_12964113	3300006338	Marine	MKTLILAISLPVILGNSAGALGALLPLIVGAVIGLGVIIAIVWGLIKWLT*
Ga0068482_14569841	3300006338	Marine	MTKILLLTPFLLGNSAGALGVLLPLVIGAVISLGVIIAIVWGLIKWLS*
Ga0068482_16852661	3300006338	Marine	NKLLFLLTPFILGNSAGALGALVPLLIGAAIGLAVIIGIVWGLIKWLS*
Ga0068481_13059142	3300006339	Marine	MKYLLALTPFLLGNSAGAIGALTSLFIGAVIAVIVVGVIIWAIIKWVT*
Ga0068503_101122262	3300006340	Marine	MNKLFVAITTPFILGNSAGALGALLPLIVGAVIGLAVIIGIVWGLIKWLT*
Ga0068503_102630543	3300006340	Marine	MNKLFIAITTPFLLGNSAGALGALLPLIVGAVIGLGVIIAIVWGLIKWLT*
Ga0068503_103938134	3300006340	Marine	MNNNGKILLLTPFILGNSAGALGALLPLVIGAVIGLGVIIGIVWGLIKWLT*
Ga0068503_103959522	3300006340	Marine	MKTLILAISLPVLLGNSAGALGALLPLAIGAVIGLAAIVGIIYGLIKWLS*
Ga0068493_101285542	3300006341	Marine	MKYLLALTPFLLGNSAGALGALGSLFIGAVIGLSVIIGVI
Ga0066376_107785471	3300006900	Marine	MKYLLALTPFLLGNSAGAIGELTSLFIGAVITVIVIGVIIWFIIKW
Ga0066372_100649316	3300006902	Marine	MKTLLVAITTPFLLGNSAPVGALIPLLIGGVIGLGVIIAIVWGLIKWLT*
Ga0066372_101009806	3300006902	Marine	MNNKGKILLLTPFLLGNSAGALGALVPLLIGAAIGLAVIIGIVWGLIKWLT*
Ga0066372_101904541	3300006902	Marine	NKLTSILILSLFLLGNSAGGLGGLVLLAGGAIIGLGVIIGIVWGLIRWLT*
Ga0066372_103250453	3300006902	Marine	MKGYLYGLLPVTPFLLGNSAGGLAGLGALVIAGVIGIGAIIAVIWGLIKWLA*
Ga0066372_103803583	3300006902	Marine	KEEMNKTLILAIITPFILGNSAGGLGGLVFLAGGALIGLGVIIGIIWGLIRWLS*
Ga0105020_10070743	3300007514	Marine	MRILLLTPFLLGNSAPVGALIPLLIGGVIGLGIIIGIIYGLIKWLT*
Ga0105021_10298781	3300007515	Marine	MINPYLILIPFLLGNSAPVGGLITLLIGGVLGIGIIIGIIYGLIRWLA*
Ga0105664_11342252	3300007756	Background Seawater	MTRTTGILLVPFLLGNSAGALGALLPLIVGAIIGLGVIIGIVWGLIKWLT*
Ga0105668_10216523	3300007758	Background Seawater	MTKTTSILLLTPFLLGNSAGALGALLPLAIGAIIGLGVIIGIIWGLIKWLT*
Ga0181432_11019863	3300017775	Seawater	MNNKGKILLLTPFLLGNSAGALGALVPLVIGAVIGLAVIIGIVWGLIKWLT
Ga0181432_11503702	3300017775	Seawater	MVIKGEYMKYLLALTPFLLGNSAGAIGALTSLIIGAVIGLSVIIGVIWLIIKWVT
Ga0181432_11597831	3300017775	Seawater	MTRISILLTPFLLGNSAGALGALLPLAIGAVIGLAAIVGIIYGLIKWLS
Ga0181432_11999182	3300017775	Seawater	MKTLTLLTVPFLLGNSAGGLGGLVVLAGGAIIGLGIIIGIIWGLIRWLS
Ga0181432_12620631	3300017775	Seawater	LVPFILFLLGNSAGGMGGLVILAGGAIIGLGVIIGIVWGLIRWLA
Ga0181432_12838761	3300017775	Seawater	MKTLLVAITTPFLLGNSAGALGALIPLLIGGVIGLGVIIAIVWGLIKWLT
Ga0181432_13092073	3300017775	Seawater	AITTPFLLGNSAGALGALVPLLIGAAIGLAVIIGIVWGLIKWLT
Ga0211631_11273352	3300020271	Marine	MTKYLLPLIPFLLGNSAGAMGAMVELFIIAAVGLAIIIGIIWGLIKWLS
Ga0211646_100583583	3300020383	Marine	MNKTLILAIITPFILGNSAGGLGGLVFLAGGALIGLGVIIGIIWGLIRWLS
Ga0211646_101967862	3300020383	Marine	MNNKGKILLLTPFLLGNSAGALGALVPLLIGAAIGLAVIIGIVWGLIKWLT
Ga0211646_103135281	3300020383	Marine	MKTLILAIITPFILGNSAGGLGGLVVLAGGAIIGLGVIIGIVWGLIRWLT
Ga0211680_101705692	3300020389	Marine	MKILLLTPFLLGNSAGGLIGALLPLVIGAVVGITVVVGIVWGIIKWLS
Ga0211637_103360972	3300020398	Marine	MTKYLLILIPFLLGNSAGALGALLPLLIGAVIGLGAIIAIVWGLIKWLT
Ga0211623_100878721	3300020399	Marine	MSKLLLLLTPFLLGNSAGGLGGLLVLVVTCIIAVGAVIAILWGLAKWLL
Ga0211623_103856031	3300020399	Marine	MKTLLVAITTPFLLGNSAGALGALVPLLIGAAIGLAVIIGIVWGLIKWLT
Ga0211552_102966941	3300020412	Marine	MNKLLLLLIPFLLGNSAGGLGGLVILAGGAIIGLGVIIGIIWGLIRWLT
Ga0211536_101756592	3300020426	Marine	MNRLILITLLAIFTLGNSAGGLGGLVFLAGGAIIGLGVIIGIIWGLIKWLS
Ga0211603_100360242	3300020427	Marine	MTKYLLPLIPFLLGNSAGAIGAMTTVFILAAIALAIIIGIIWGLIKWLS
Ga0211603_101505752	3300020427	Marine	MNKEYLYSILLTPFLLGNSAPVGAIIPLLIGAVFGLAVIIGIVYGLVKWLT
Ga0211670_102971781	3300020434	Marine	MKTLLVAITTPFLLGNSAGALGALVPLLIGAAIGLAVIIGIVWGLIK
Ga0211639_101410042	3300020435	Marine	MKTLLVAITTPFLLGNSAPVGALIPLLIGGVIGLGVIIAIVWGLIKWLT
Ga0211578_100994262	3300020444	Marine	MKLLLFVPFLLGNSAGGLAGLGALVIAGVIGLGALVAIIWGLAKWLF
Ga0211697_100997492	3300020458	Marine	MKYLLALTPFLLGNSAGAIGALTSLFIGAVIAVIVVGVIIWLIIKWVT
Ga0206685_1000831210	3300021442	Seawater	MKLLLFVPFLLGNSAGGLAGLGALVIGAVIGLAAIIAIIWGLIKWLT
Ga0206681_100546493	3300021443	Seawater	MTKYLLPLIPFLLGNSAGAAGAMAELFIIAAVGLAIIIGIIWGLIKWLS
Ga0206681_103908272	3300021443	Seawater	MKLLLLVPFLLGNSAGGLAGLGALVIGAVIGLAAIIAIIWGLIKWLT
Ga0209556_10556152	3300025547	Marine	MKLLLLTPFLLGNSAPVGALIPLLLGGLLGLGVIIGIIWAVIKWLS
Ga0209043_10320106	3300025667	Marine	MKSLLLTPFLLGNSAPVGALIPLLLGGLLGLGVIIGIIWAVIKWLS
Ga0207989_10429274	3300026209	Marine	MKLLLLTPFLLGNSAPVGALIPLLLGGLLGLGVIIGIIWAVIKWLSS
Ga0209753_10306544	3300027622	Marine	MKTLILVSSTPFILGNSAPVGALIPLLIGGVIGLGVIIGIVWGLIKWLT
Ga0209753_10923393	3300027622	Marine	MNKLFVAITTPFILGNSAGALGALVPLIVGAVIGLGVIIAIVWGLIKWLT
Ga0209432_10678864	3300027630	Marine	MRILLLTPFILGNSAGALGALVPLVVGAVIGLAVIIGIVWGLIKWLT
Ga0209432_11793702	3300027630	Marine	MNKLFIAITTPFLLGNSAGALGALLPLIVGAVIGLAVIIGIVWGLIKWLT
Ga0209019_10178233	3300027677	Marine	MKTLLVAIITPFLLGNSAPVGALIPLLIGGVIGLGVIIAIVWGLIKWLT
Ga0209019_10351556	3300027677	Marine	LLLTPFLLGNSAGALGALVPLVIGAVIGLAVIIGIVWGLIKWLT
Ga0209752_10189923	3300027699	Marine	MTKYLLPLIPFLLGNSAGAVGAMTTVFILAAIALAIIIGIIWGLIKWLS
Ga0257108_11647932	3300028190	Marine	MKYLLALTPFLLGNSAGALGALGSLFIGAVIGLSVIIGIIWLIIKWVT
Ga0257107_10269343	3300028192	Marine	MKLLLFVPFLLGNSAGGLAGLGALVVAGIIGLGAIIAVIWGLIKWLA
Ga0257107_10473681	3300028192	Marine	MTRLILITLLAIFTLGNSAGGLGGLIVLAGGAIIGLIVCIGIVWGLIKWLS
Ga0257109_12162552	3300028487	Marine	MKYLLALTPFLLGNSAGAIGPLVSLFIGAVIGLTVIIGIIWFIIKWVT
Ga0257113_11892232	3300028488	Marine	MKILLLIPFLLGNSAGGLIGALIPLIIGAMIGLTVIIGIVWGLIKWLS
Ga0315328_100253036	3300031757	Seawater	MKGYLYGLLVPTTPFLLGNSAPVGALIPLLIGGVIGLGAIIGIVYGLIKWLT
Ga0310121_104660452	3300031801	Marine	MKYLLALTPFLLGNSAGAIGALTSLFIGAVIVVIVVGVIIWFIIKWVT
Ga0310121_105334411	3300031801	Marine	MKYLLALTPFLLGNSAGAIGALTSLFIGAVLVVIVVGVIIWFIIKWVT
Ga0315319_104957871	3300031861	Seawater	MKTLILAITTPFILGNSAGGLGGLALLAGGAIIGLGVIIGIVWGLIKWLS
Ga0315319_106349021	3300031861	Seawater	QMKLLLLVPFLLGNSAGGLAGLGALIIAAIIGLGAIIAIIWGLMKWLT
Ga0315318_105479811	3300031886	Seawater	MKLLLFVPFLLGNSAGGLAGLGALVIGAVIGLGAIIAVIWGLIKWLA
Ga0315324_100947642	3300032019	Seawater	MKLLLLVPFLLGNSAGGLAGLGALIIAAIIGLGAIIAIIWGLMKWLT
Ga0315329_100339416	3300032048	Seawater	MKTLILAITTPFILGNSAGGLGGLALLAGGAIIGLGVIIGIVWGLIRWLA
Ga0315329_100847683	3300032048	Seawater	MNKLILVTLLAILTLGNSAGGLGALLPLLIGAVIGLGVIIAICWGLIKWLT
Ga0315329_102630632	3300032048	Seawater	MNKLFVAITTPFILGNSAGALGALLPLIVGAVIGLGVIIAIVWGLIKWLT
Ga0315329_104037092	3300032048	Seawater	MTKLTSILIVVTLLPFILGNSAGGMGGLVILAGGAIIGLGICIGIVWGLIRWLA
Ga0310345_100273838	3300032278	Seawater	MTKTTILLLTPFILGNSAGALGALVPLVIGAVIGLAVIIGIVWGLIKWLT
Ga0310345_100847943	3300032278	Seawater	MNKLFVAITTPFLLGNSAGALGALVPLLIGAAIGLAVIIGIVWGLIKWLT
Ga0310345_101040673	3300032278	Seawater	MKTLILLTIPFLLGNSAGGLGGLVVLAGGAIIGLGVIIGIIWGLIKWLS
Ga0310345_103574813	3300032278	Seawater	MTRILLLTPFILGNSAGALGSLLPLAIGAIIGLGVIIGIIYGLIKWLT
Ga0310345_107080142	3300032278	Seawater	MKLLLLVPFILFILGNSAGGMGGLVILAGGAIIGLGVIIGIVWGLIKWLT
Ga0310345_113576143	3300032278	Seawater	MKLLLLVPFILFLLGNSAGGLGGLALLAGGAIIGLGVIIGIIWGLIRWL
Ga0315334_106236702	3300032360	Seawater	MVKLHSIKYLLVLTPFLLGNSAGALGALLPLAIGAIIGLAAIIGIVWGLIKWLS
Ga0315334_111491873	3300032360	Seawater	MKLLLLVPFILFLLGNSAGGMGGLVILAGGAIIGLGVIIGIVWGLIRWLA
Ga0315334_114903251	3300032360	Seawater	MKTLTLLTVPFLLGNSAGGLGGLVVLAGGAIIGLGVIIGIIWGLIRW
Ga0315334_116764511	3300032360	Seawater	MKTLILLTIPFLLGNSAGGLGGLVFLAGGAIIGLGVIIGIIWGLIKWLA
Ga0310342_1004146174	3300032820	Seawater	SDKDEKENEMKILLLTPFLLGNSAGALGALLPLIIGAVVGLGIVFGIVWGLIKWLS
Ga0310342_1008619451	3300032820	Seawater	MKLLLFVPFLLGNSAGGLAGLGALVVAGIIGIGALVAIIWGLAKWLF
Ga0310342_1019349443	3300032820	Seawater	MKTLTLLTVPFLLGNSAGGLGGLVVLAGGAIIGLGVIIGIIWGLIRWLS
Ga0310342_1019793192	3300032820	Seawater	MKTLLVAITTPFLLGNSAPVGALIPLFIGGVIGLGVIIAIVWGLIKWLT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099429

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences