Metagenome Family F099489

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099489
Family Type	Metagenome
Number of Sequences	103
Average Sequence Length	41 residues
Representative Sequence	MSDVAAYHVLFPVQGGMWTGYSQSTYLPALETIHDMLP
Number of Associated Samples	10
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	50.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.97 %
Associated GOLD sequencing projects	6
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.22

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (99.029 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut (100.000 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal proximal gut (100.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.48% β-sheet: 0.00% Coil/Unstructured: 51.52%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.22
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.22
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF12325	TMF_TATA_bd	0.97
PF00067	p450	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG2124	Cytochrome P450	Defense mechanisms [V]	0.97

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.03 %
All Organisms	root	All Organisms	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.03 %
cellular organisms	root	All Organisms → cellular organisms	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.03 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.03 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.03 %
Metazoa	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.03 %
Eumetazoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.03 %
Bilateria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.03 %
Protostomia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.03 %
Ecdysozoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.03 %
Panarthropoda	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.03 %
Arthropoda	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002175\|JGI20166J26741_11978828	Not Available	781	Open in IMG/M
3300027891\|Ga0209628_10043203	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda	4285	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Arthropoda	Host-Associated → Arthropoda	100.00%

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Arthropoda → Digestive System	100.00%

Habitat	Taxonomy	Distribution
Gut	Host-Associated → Arthropoda → Digestive System → Gut	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	100.00%

Habitat	Taxonomy	Distribution
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	100.00%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001544	Cubitermes ugandensis P1 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P1	Host-Associated	Open in IMG/M
3300002125	Cubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4	Host-Associated	Open in IMG/M
3300002127	Cubitermes ugandensis P3 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P3	Host-Associated	Open in IMG/M
3300002175	Cubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5	Host-Associated	Open in IMG/M
3300002185	Cubitermes ugandensis P1 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P1	Host-Associated	Open in IMG/M
3300006226	Microcerotermes parvus P3 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P3	Host-Associated	Open in IMG/M
3300027558	Cubitermes ugandensis crop segment gut microbial communities from Kakamega Forest, Kenya - Cu122C (SPAdes)	Host-Associated	Open in IMG/M
3300027891	Cubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4 (SPAdes)	Host-Associated	Open in IMG/M
3300027904	Cubitermes ugandensis P3 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P3 (SPAdes)	Host-Associated	Open in IMG/M
3300027984	Cubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5 (SPAdes)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20163J15578_100232032	3300001544	Termite Gut	MSDVAAYYVFVCALFPVQGGMWTHTQIHDMLPHHS*
JGI20163J15578_100367765	3300001544	Termite Gut	VTAYHVFVCALFXVQGGMWTAVPYLPALETTHTQIHDMLSHR*
JGI20163J15578_100389025	3300001544	Termite Gut	MSDVAAYHVLFPVQGVMWTPPIPALEKTHTQIHDMLPHHS*
JGI20163J15578_102999443	3300001544	Termite Gut	MSDAAAYHVLFPVQGGMCTGYSQSTYLPALETTHTQIHDMLPHRS*
JGI20163J15578_103554413	3300001544	Termite Gut	MSDVAAYHILFPVQGGMWTAVHIPHYTTQALIHDMLPHHSQ*
JGI20163J15578_104055872	3300001544	Termite Gut	MSDVAAYHILFVVQRGMWTGYSQFTYLSALQTIHDMLPHRS*
JGI20163J15578_108039081	3300001544	Termite Gut	MSDVAAYHVLECALFPVQGGMWTGYLPALETTHK*
JGI20163J15578_108268352	3300001544	Termite Gut	IMSDVAAYHVLFPVQGGMWTGYSQSTYLPALETTHTLIHDIYM*
JGI20165J26630_105724192	3300002125	Termite Gut	MNDVATYHVFLCVLFPVQGVMWTASTYLPALDFIFIH*
JGI20165J26630_105985991	3300002125	Termite Gut	MSDVAAYYVFVYALFPIQGRYVESTYLTALETTYTQIHDMLSHRS*
JGI20165J26630_106378672	3300002125	Termite Gut	MSDVAAYHVFVCALFPVQRGAVQSTYLSALETTHTQIHDML
JGI20165J26630_106689142	3300002125	Termite Gut	MSDVAAYVFVYAFPVQXGMWTGYSQSTYLPALETTHTQIHDMLSHRS*
JGI20164J26629_102621652	3300002127	Termite Gut	MSGVAAYHVLFPVQGGMWTGYXQSTYLPALETIHDMLPHRS*
JGI20164J26629_103636261	3300002127	Termite Gut	MSDVAAYNVLFPVHGGMWTGYSQSTYLHALQTIHDMLPHH
JGI20164J26629_104726902	3300002127	Termite Gut	MSDMAAYHVFIASPHIPALETTHTQIHDMLTHHT*
JGI20164J26629_105388851	3300002127	Termite Gut	GTPFNDDDSNTYLFPVQGGMWTGYSHSTYLPALETIHDMLSDHS*
JGI20166J26741_100217824	3300002175	Termite Gut	MSDVATYHVLFPVQGGMWSGYSQSTYLHALETTHTQIHDMLPHHS*
JGI20166J26741_100325616	3300002175	Termite Gut	MSDVAAYHVLFPVQVGMWPVPYLPALETTHTHTQTHDMLPHRS*
JGI20166J26741_100640902	3300002175	Termite Gut	MIDVAAYHVLFPVQGGMWTGYSQSTYLPALETIHD
JGI20166J26741_104216481	3300002175	Termite Gut	MSDVAAYHVWFPVQGGMWTAVQSTYRPALETIHDMLPHHS*
JGI20166J26741_108855472	3300002175	Termite Gut	VAAYHILFPVQGGMWTGYSQSTYLPALETTHTQIQDMLPHHL*
JGI20166J26741_114457651	3300002175	Termite Gut	MSDVTAYHVLFVVQGGMWAGYSQSTYLPALDTTHDMLPHHS*
JGI20166J26741_114484571	3300002175	Termite Gut	MSVVAAYRVFMYALFPVQGGMWTGYSQSTYLPALETTHTQIHDMLPQRS*
JGI20166J26741_114650054	3300002175	Termite Gut	MSNVAAYHVLFPVQGGMWTGYSQSTYLPALEHAVTIKS*
JGI20166J26741_114820431	3300002175	Termite Gut	MSDVATYLVLVCGLFPVQGGMWTGYSQSTYLPALETIHDMMPHHS*
JGI20166J26741_116020711	3300002175	Termite Gut	MSDVAAYHVLVCALFPVWGGMWTDYSQSTYLPALETIHDMLPHHS*
JGI20166J26741_116420221	3300002175	Termite Gut	MSDVAAYHVLTCALFTGAGGMWTGYSQSTYLPALETTHTQVHDMLPHHS*
JGI20166J26741_116542954	3300002175	Termite Gut	YFIIMSDVAAYHVLFVVQGGMWTGYSQSTYLPALQTIHDALPHRS*
JGI20166J26741_116722183	3300002175	Termite Gut	MSDVAAYHVLFPVKGGMSTGYSQSTYLPALETTHTQIHDMLPHYS*
JGI20166J26741_116925951	3300002175	Termite Gut	MSDVAAYHVLFPVQGGSQSTHIPALQTIHDMLPHHS*
JGI20166J26741_116974861	3300002175	Termite Gut	MSDVAAYHVFMCALFPVQGGMWTLFPVQGGMCESTYLPALETTHTQIHDMLPHHS*
JGI20166J26741_117945791	3300002175	Termite Gut	MSDVAAYHVLFPVQEGMWTGYRQSTYLPALETIHGMLPHHS*
JGI20166J26741_118768141	3300002175	Termite Gut	MSDAAAYRVLFPVQGVMWTVYSQYTYLPALETTHTQIHDTLLHHA*
JGI20166J26741_119210441	3300002175	Termite Gut	MSGVAVYHVLFPVQGGMWTGYSQSTYLPALETIHDIL
JGI20166J26741_119342397	3300002175	Termite Gut	MSDVAVYNVFVCALFPVQGGMWTAVHYLPALETTHTQIHDMLPHHS*
JGI20166J26741_119788282	3300002175	Termite Gut	MSDVAAYHVLFAVQVGMWTGYSQSTYLPALQTIHDMLPHHSY*
JGI20166J26741_122411602	3300002175	Termite Gut	MSDVAAYHILFPVQGGVWTAVQSTHLPALETIHDMLPHHS*
JGI20166J26741_122521341	3300002175	Termite Gut	MSDVAAYRVLFPVQGGTWTGYTQSTYLPALETIHDILPH
JGI20163J26743_103409971	3300002185	Termite Gut	MSDVAAYHVLFAVQGGVWTGYSQSTYLPALETIHDML
JGI20163J26743_103987111	3300002185	Termite Gut	MIDVAAYHVFVCALFPVQGGMWTGQSTYLPALETTHT
JGI20163J26743_107115951	3300002185	Termite Gut	SIIMSDVATYHVLFPVQGGMWSGYSQSTYLHALETTHTQIHDMLPHHS*
JGI20163J26743_107839821	3300002185	Termite Gut	IMSDVAAYHVLFPVQGGMWTGYSQSTYLPALETTHTHIHDMLPQHS*
JGI20163J26743_108058191	3300002185	Termite Gut	SDVAAYPVFVCALFPVQGGMWTASPHIPALETTHTQIQDMLPHHS*
JGI20163J26743_108706002	3300002185	Termite Gut	MSDVAAYHVLFVVQGGMWTDYSQSTYLPALQTIHDMLQHH
JGI20163J26743_109119272	3300002185	Termite Gut	MSLIIISDVAAYHVLFPVQGGMWTGYSQSTYLPALETI
JGI20163J26743_110032591	3300002185	Termite Gut	VSDVAAYHVLFPVQGVMWTGYSQSTYLPALETIHDMLPHRS
JGI20163J26743_111002292	3300002185	Termite Gut	VSDVAAYHVLVRTLFPVQGDVWTGYSQSTHLPALE
JGI20163J26743_111371901	3300002185	Termite Gut	SDVAAYHVLFPVQGGMWTGYTQSTYLPALETTHTQKHDMLPHH*
JGI20163J26743_111809292	3300002185	Termite Gut	MSDVATYLVLVCGLFPVQGGMWTGYSQSTYLPALET
JGI20163J26743_112360031	3300002185	Termite Gut	MIDVAAYRVFVCVLFPVQGGMWTGYSQSTYLPALETIHDML
JGI20163J26743_112437083	3300002185	Termite Gut	MSDVAAYHVFVCALFPVQEDSGLQSTYLPALETTHTQI
JGI20163J26743_112613652	3300002185	Termite Gut	MWKTIIRLYNVLNVLVCALFPVQGGMWTGYGIPALGTTHTLIHDMLPHHS*
JGI20163J26743_114590435	3300002185	Termite Gut	VAAYRVLFPVQGGTWTGQSTYHPALETTHTQIHDMLPHRT*
Ga0099364_103381414	3300006226	Termite Gut	MSVVAAYRIFVCALFLVQGGMWTGYRQSTYLPAPETTRNFS*
Ga0099364_104265951	3300006226	Termite Gut	VFVCTLFPVQGGMWTGYRQSTYLPALETTYKQIHAILPQHS*
Ga0099364_104590032	3300006226	Termite Gut	MSVVAAYHIFVCSLFLVQGGMWTGYSQFTYLPAPETKHTQIYDMLPQHS*
Ga0099364_105006941	3300006226	Termite Gut	MSVVAAYHVFVCMLFPVQGGMWTGQSTYLPALETT*
Ga0099364_108072031	3300006226	Termite Gut	MSVVAAYHMFVCALFLVQRGTWTGYNQSTYLSALETTHTQIYDT
Ga0209531_100675021	3300027558	Termite Gut	HMAAYNVFVCALFPVQGGMWTGYSQFTYLPALVTKHTQIHDMLPHRS
Ga0209531_100960711	3300027558	Termite Gut	AAYHAFPVQGGMWAGYSQPTYLLALEMHDMLPRRL
Ga0209531_101432811	3300027558	Termite Gut	MIDVAAYHVFVCALFPVQGGMWTGQSTYLPALETTHTQ
Ga0209628_100245651	3300027891	Termite Gut	YEYFITHIMSDVAAYHVFVCALFPMQGGMSIYLPALETMHTQKHDMLPHRL
Ga0209628_100432031	3300027891	Termite Gut	MSDVAAYHVLFPVQGGMWTGYTQSTYLPALETTHTQKHDMLPHH
Ga0209628_101317244	3300027891	Termite Gut	MIDVAAYRVFVCVLFPVQGGMWTGYSQSTYLPALET
Ga0209628_102447711	3300027891	Termite Gut	MSDVAAYHVFVCALFPVQGGMWTGYSQYTYLPALETIHDMLP
Ga0209628_105512301	3300027891	Termite Gut	MFDVAAYPVFVCALFAVQGDMWTGYSQSTYLPALQT
Ga0209628_105971391	3300027891	Termite Gut	MSGVAAYHVLFPVQGGMWTGYSQSTYLPALETIHDML
Ga0209628_106446042	3300027891	Termite Gut	MSDVATYLVLVCGLFPVQGGMWTGYSQSTYLPALETIH
Ga0209628_108028842	3300027891	Termite Gut	MSDVAAHRVLFPVQGGMWTGYSQSTYLPALETIHD
Ga0209628_112323461	3300027891	Termite Gut	MSDMAAYHVLQGGMWTGYSQSTYLPALETIHDMLP
Ga0209737_100211675	3300027904	Termite Gut	MSDVAAYHVFVCALFPYLPALETMHTQIHDMLPHH
Ga0209737_100763851	3300027904	Termite Gut	MSDVAAYHVFMCALFPVQGGMWTLFPVQGGMCESTYLPALETTHTQIHDMLPHHS
Ga0209737_101268283	3300027904	Termite Gut	MSDVAAYHVLFPAQGGMWTGYSQSTYLPALETIHDM
Ga0209737_101446791	3300027904	Termite Gut	VSDVAAYHVFVCALFPVQGGMWTGYGQSTYLPALETTHTQIHD
Ga0209737_104692832	3300027904	Termite Gut	ESSVIISDVAAYHILFPVQGGMWTGYSQSTYLPALETTHTQIQDMLPHHL
Ga0209737_104973021	3300027904	Termite Gut	MSDVAAYHVLFAVQGGMWTGYSQSTYLPALQTIHDMLPHR
Ga0209737_106761811	3300027904	Termite Gut	MSDVAAYHVLFPVQGGMWTGYSQSTYLPALETIHDMLP
Ga0209737_106830291	3300027904	Termite Gut	MINVAAYRVFVCALFPVQGGMWTGQSTYHLALETIRTRYAAT
Ga0209737_106902511	3300027904	Termite Gut	MSDVAAYHVFVCTLFPLQGGVWIGCSQSTHLPAMETT
Ga0209737_106932762	3300027904	Termite Gut	MFDVAAYPVFVCALFAVQGDMWTGYSQSTYLPALQTTHTQI
Ga0209737_107609291	3300027904	Termite Gut	MSDVATYLVLVCGLFPVQGGMWTGYSQSTYLPALETIHDM
Ga0209737_108820981	3300027904	Termite Gut	MSDVAAYHVFVCALFPVQGGMWTAQQSTYLPALETTHTQIH
Ga0209629_100020671	3300027984	Termite Gut	MSDVAAYHVLVCVLFPVQGGMWTGQTTYLPALETIHDMLPHHS
Ga0209629_100296121	3300027984	Termite Gut	MSDVEAYHVLFAVQGDMWTGYSQSTYLPALQTIHDMLPHHS
Ga0209629_100441711	3300027984	Termite Gut	MIDVAAYRVFVCVLFPVQGGMWTGYSQSTYLPALETIHDM
Ga0209629_100449241	3300027984	Termite Gut	MSDVEAYHVLFPVQGGMWTGYSQSTYLPALETIHDMLPHHS
Ga0209629_100545121	3300027984	Termite Gut	MIDVAAYHVFVCALFPVQGGMWTGQSTYLPALETTHTQIHDM
Ga0209629_101147401	3300027984	Termite Gut	MRDVAAYHVLFPAQGGMWTGYSQSTYLPALETIHDM
Ga0209629_101427663	3300027984	Termite Gut	MSDVAAYHVFVCALFPVQRGAVQSTYLSALETTHTQIHDMLPH
Ga0209629_102383791	3300027984	Termite Gut	YEYFIIMSDVAAYHVLFPVQGGMWTGYSQSTYLLALETLHDMLPHRS
Ga0209629_102455581	3300027984	Termite Gut	MSDVAAYHVLFPVQGGMWTGYSQSTYLPALETTHTLIHDIYM
Ga0209629_102733311	3300027984	Termite Gut	MSDVAAYHVFVCALFPVQGGMWTGYSQSTYLPALETTHTQI
Ga0209629_103163032	3300027984	Termite Gut	MSVVAAYHVYVCALFPVQGGMWTGYSQSTYLPALETIHDMLPH
Ga0209629_103308171	3300027984	Termite Gut	MSDVAAYHVLFPVQGGMWTGYSQSTYLPALETIHDMLQH
Ga0209629_103358283	3300027984	Termite Gut	MSDVAAYHVFVCALFPVQGGMWTAQQSTYLPALETTHTQIHDM
Ga0209629_103423681	3300027984	Termite Gut	MSDVAAYHVFVCALFPVQGGMWTGHSQSTYLPALETTHTQIHDMLPHHS
Ga0209629_104205781	3300027984	Termite Gut	MSDVAAYHVLFPVQGGMWTGYSQSTYLPALETIHDM
Ga0209629_104232161	3300027984	Termite Gut	MSDVAAYRVLVCALFPVLGGMWTASTYLPALETTHT
Ga0209629_104349101	3300027984	Termite Gut	MSDVAAHHVLFVVQGGMWTGYSQSTYLPALQTIHDMLPH
Ga0209629_104630651	3300027984	Termite Gut	MIDVATYHVLFPVQGGMWTGYSQSTYLPALETIHDMLP
Ga0209629_106225661	3300027984	Termite Gut	MSDVAAHRVLFPVQGGMWTGYSQSTYLPALETIHDML
Ga0209629_108804011	3300027984	Termite Gut	MRDVAAYHVLFPVQGGVWSDYSQSTYLPALETIHDMLPH
Ga0209629_109035621	3300027984	Termite Gut	MSDVATYHVLFPVQGGMWTGYSQSTYLPALETIHDMLQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F099489

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences