Metagenome / Metatranscriptome Family F099553

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099553
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	89 residues
Representative Sequence	MSMETGIYGAAPQWARIGVIMVVASWHDALAADELPREIVGNWCVAIERMLPGKTYTYRRCKDSNWDIIVRWDGFDAQETSCELN
Number of Associated Samples	78
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	65.98 %
% of genes near scaffold ends (potentially truncated)	90.29 %
% of genes from short scaffolds (< 2000 bps)	91.26 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.233 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (20.388 % of family members)
Environment Ontology (ENVO)	Unclassified (33.981 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.340 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 27.43% β-sheet: 3.54% Coil/Unstructured: 69.03%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF04392	ABC_sub_bind	2.91
PF12833	HTH_18	1.94
PF01381	HTH_3	0.97
PF06055	ExoD	0.97
PF13442	Cytochrome_CBB3	0.97
PF13384	HTH_23	0.97
PF00082	Peptidase_S8	0.97
PF07859	Abhydrolase_3	0.97
PF02518	HATPase_c	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.91
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.97
COG3932	Exopolysaccharide synthesis protein ExoD	Cell wall/membrane/envelope biogenesis [M]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.23 %
Unclassified	root	N/A	7.77 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.23 %
Unclassified	root	N/A	7.77 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.23 %
Unclassified	root	N/A	7.77 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	92.23 %
Unclassified	root	N/A	7.77 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	90.29 %
Unclassified	root	N/A	7.77 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	85.44 %
Unclassified	root	N/A	7.77 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.94 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	85.44 %
Unclassified	root	N/A	7.77 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000793\|AF_2010_repII_A001DRAFT_10110520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	577	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1047489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	606	Open in IMG/M
3300000956\|JGI10216J12902_118443989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	593	Open in IMG/M
3300005332\|Ga0066388_103905419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	760	Open in IMG/M
3300005467\|Ga0070706_100932857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	801	Open in IMG/M
3300005468\|Ga0070707_101420636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	660	Open in IMG/M
3300005471\|Ga0070698_100745478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	922	Open in IMG/M
3300005549\|Ga0070704_101814404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	564	Open in IMG/M
3300005713\|Ga0066905_100232443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1403	Open in IMG/M
3300005713\|Ga0066905_100841702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	798	Open in IMG/M
3300005713\|Ga0066905_100841865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	798	Open in IMG/M
3300005713\|Ga0066905_101087828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	709	Open in IMG/M
3300005764\|Ga0066903_103193640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	886	Open in IMG/M
3300005764\|Ga0066903_104377326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	754	Open in IMG/M
3300005764\|Ga0066903_107030860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	583	Open in IMG/M
3300005764\|Ga0066903_107461973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	564	Open in IMG/M
3300006028\|Ga0070717_10168916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1901	Open in IMG/M
3300006028\|Ga0070717_10455359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1153	Open in IMG/M
3300006178\|Ga0075367_10809632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	597	Open in IMG/M
3300006880\|Ga0075429_100590687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	973	Open in IMG/M
3300009100\|Ga0075418_10627232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1157	Open in IMG/M
3300010043\|Ga0126380_11171537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	660	Open in IMG/M
3300010046\|Ga0126384_10679134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	910	Open in IMG/M
3300010046\|Ga0126384_12230885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	527	Open in IMG/M
3300010047\|Ga0126382_11442994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	630	Open in IMG/M
3300010047\|Ga0126382_12238845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	527	Open in IMG/M
3300010048\|Ga0126373_10575934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1176	Open in IMG/M
3300010358\|Ga0126370_11180048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	711	Open in IMG/M
3300010359\|Ga0126376_12579115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	557	Open in IMG/M
3300010360\|Ga0126372_12433313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	574	Open in IMG/M
3300010360\|Ga0126372_13159306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	512	Open in IMG/M
3300010361\|Ga0126378_11566624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	748	Open in IMG/M
3300010362\|Ga0126377_11761775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	695	Open in IMG/M
3300010366\|Ga0126379_11772066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	722	Open in IMG/M
3300010398\|Ga0126383_11087608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	889	Open in IMG/M
3300010398\|Ga0126383_11089127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	888	Open in IMG/M
3300010398\|Ga0126383_11475953	Not Available	770	Open in IMG/M
3300012198\|Ga0137364_10790973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	717	Open in IMG/M
3300012199\|Ga0137383_11277573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	524	Open in IMG/M
3300012200\|Ga0137382_11136852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	557	Open in IMG/M
3300012201\|Ga0137365_10136496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1844	Open in IMG/M
3300012205\|Ga0137362_10763894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	829	Open in IMG/M
3300012206\|Ga0137380_11392420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	586	Open in IMG/M
3300012209\|Ga0137379_11026814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	729	Open in IMG/M
3300012211\|Ga0137377_10819800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	863	Open in IMG/M
3300012211\|Ga0137377_10905590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	814	Open in IMG/M
3300012211\|Ga0137377_11960059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	502	Open in IMG/M
3300012350\|Ga0137372_10702375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	732	Open in IMG/M
3300012356\|Ga0137371_10675370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	791	Open in IMG/M
3300012356\|Ga0137371_10939657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	657	Open in IMG/M
3300012360\|Ga0137375_11389397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	523	Open in IMG/M
3300012923\|Ga0137359_11202651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	646	Open in IMG/M
3300012948\|Ga0126375_12101395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	502	Open in IMG/M
3300012961\|Ga0164302_11631037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	537	Open in IMG/M
3300012971\|Ga0126369_10456023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1329	Open in IMG/M
3300015359\|Ga0134085_10499123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	556	Open in IMG/M
3300016294\|Ga0182041_10277848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1377	Open in IMG/M
3300016357\|Ga0182032_10961664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	728	Open in IMG/M
3300016357\|Ga0182032_11109256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	679	Open in IMG/M
3300016371\|Ga0182034_11039984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	708	Open in IMG/M
3300016422\|Ga0182039_10816795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	828	Open in IMG/M
3300016445\|Ga0182038_10808789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	822	Open in IMG/M
3300018468\|Ga0066662_11992740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	608	Open in IMG/M
3300019890\|Ga0193728_1289700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	629	Open in IMG/M
3300021170\|Ga0210400_11155837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	625	Open in IMG/M
3300021560\|Ga0126371_12184193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	668	Open in IMG/M
3300021560\|Ga0126371_12482683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	627	Open in IMG/M
3300021560\|Ga0126371_12718904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	600	Open in IMG/M
3300025922\|Ga0207646_11512198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	581	Open in IMG/M
3300025922\|Ga0207646_11753017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	532	Open in IMG/M
3300027787\|Ga0209074_10475269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538	Open in IMG/M
3300028811\|Ga0307292_10333920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	638	Open in IMG/M
3300028814\|Ga0307302_10358353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	720	Open in IMG/M
3300031561\|Ga0318528_10416940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	721	Open in IMG/M
3300031564\|Ga0318573_10525240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300031573\|Ga0310915_10251925	All Organisms → cellular organisms → Bacteria → Proteobacteria	1242	Open in IMG/M
3300031668\|Ga0318542_10141421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1190	Open in IMG/M
3300031681\|Ga0318572_10568432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	676	Open in IMG/M
3300031719\|Ga0306917_10064110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2522	Open in IMG/M
3300031744\|Ga0306918_10021597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3913	Open in IMG/M
3300031770\|Ga0318521_10165276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1263	Open in IMG/M
3300031796\|Ga0318576_10639515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	501	Open in IMG/M
3300031805\|Ga0318497_10650593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	591	Open in IMG/M
3300031820\|Ga0307473_11149036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	575	Open in IMG/M
3300031845\|Ga0318511_10509079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	557	Open in IMG/M
3300031879\|Ga0306919_10432699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1011	Open in IMG/M
3300031897\|Ga0318520_10184873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1223	Open in IMG/M
3300031959\|Ga0318530_10203579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	812	Open in IMG/M
3300032025\|Ga0318507_10417332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	584	Open in IMG/M
3300032035\|Ga0310911_10330383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	879	Open in IMG/M
3300032042\|Ga0318545_10376096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	512	Open in IMG/M
3300032052\|Ga0318506_10015711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2664	Open in IMG/M
3300032064\|Ga0318510_10259830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	715	Open in IMG/M
3300032064\|Ga0318510_10450090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	553	Open in IMG/M
3300032076\|Ga0306924_10331520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1745	Open in IMG/M
3300032076\|Ga0306924_10427742	All Organisms → cellular organisms → Bacteria → Proteobacteria	1514	Open in IMG/M
3300032261\|Ga0306920_100963412	Not Available	1244	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.09%
Host-Associated	Host-Associated	2.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.09%
Plants	Host-Associated → Plants	2.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.09%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.94%
Roots	Host-Associated → Plants → Roots	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.61%
Loam	Environmental → Terrestrial → Soil → Loam	17.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.94%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.78%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	34.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.97%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.97%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	20.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.48%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.56%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.71%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.97%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.97%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A001DRAFT_101105201	3300000793	Forest Soil	VRSLGYDMSMGTGIYSATPQWARIGIIMVVGSWHDAFAADQLPREIVGNWCVAIERMLPGKTYTYWRC
AP72_2010_repI_A100DRAFT_10474891	3300000837	Forest Soil	MHVGCDIGIMGTGIYGATPRWTRIGAIIVVCFWYDALAADQLPRQIVGGWCLTSELPGKTYAYRRCKNGNYDIIVRWDGFDAQXTSCELNTIKXLGAAW
JGI10216J12902_1184439892	3300000956	Soil	MSIIGTAVYGATPQWARIGAIVVMCSCHDVLAADQLPRQIIGVWCLRNEGMLLETYSYRRCKDNNWDIIVRRDGFDAQETSCNLNKIE
Ga0066388_1039054192	3300005332	Tropical Forest Soil	MVVCFWYDALAADQLPRQIVGGWCLTSELPGKTYAYRRCKNGNYDIIVRWDGFDAQETSCELNTIKRQGAAWLASFGCSGAGL
Ga0066388_1081455642	3300005332	Tropical Forest Soil	MGFYLAAFRKGLNDAHVGCDMSIMGTGIYGATPRWTRIGAIMVVCFWYDALAADQLPRQIVGGWCLTSERPGKTYAYRRCKNGNYDIIVRWDGFDAQETS
Ga0008090_158908571	3300005363	Tropical Rainforest Soil	MTHWARIGAIMVVCSWHDALAADELPRQIIGNWCVAIERMLPGKTYTYRRCKDSNWDIIVRWDGFDAQETSCELNTIKRQ
Ga0070706_1009328571	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	METGIYGAAPQWAGISVIMVVASWHDALAADQLPREIVGNWCVAIERMLPGKTYTYRRCK
Ga0070707_1014206361	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	METGIYGAAPQWAGISVIMVVASWHDALAADQLPREIVGNWCVAIERMLPGKTYTYRRCKDSNWDIIVRWDGFDAQETSCELNTIKRQGAAW
Ga0070698_1007454781	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	METGIYGAAPQWAGISVIMVVASWHDALAADQLPREIVGNWCVAIERILPGKTYTYRRCKDSNWDIIVRWDGFDAQETSCELNTI
Ga0070704_1018144041	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VRSLGYDMSIMRTGIYGATPQWARIGAIMVVCACHDALAADELPQQIIGHWCLTSEAMLPDTYAYRRCKDNNWDIIVRWAGFDAQETSCNLNKIDRRGAAWLASFSCSGAGVSWLEEDE
Ga0066905_1002324434	3300005713	Tropical Forest Soil	METGIYGAAPQWARISVIMVVASWHDALAADQLPREIVGNWCVAIEQMLREQTYPYRRCKDSNWDIIVRWDGFDAQ
Ga0066905_1008417023	3300005713	Tropical Forest Soil	MTDHWARIGAIMVVCSWHDALAADQLPREIVGSWCLAIEQMLREQTYPYRRCKDSNYDIIVRWEGFDAQETSCELNTIKRQGAAWLASFGCSGA
Ga0066905_1008418653	3300005713	Tropical Forest Soil	MRSLGYDMSMGTGIYSAAPQWARIGVIMVVGCWHDALAADQLPREIVGNWCVAIERMLPGKTYTYWRCKDSNWDIIVRWDGFDAQETGCELNTIKRQGAAWLA
Ga0066905_1010878282	3300005713	Tropical Forest Soil	VRSLGYDMSMETGIYRAAPQWARIGVIMVAGSWYDALAADQLPREIVGNWCVAIERMLPGKTYTYWRCKDSNWDIIV
Ga0066903_1031936401	3300005764	Tropical Forest Soil	VRSLGYDMRMGTGIYSAAPQWARIGVIMVVGSWHDALAADQLPRKIVGNWCVAIERMLPGKTYTYWRCKDSNWDIIVRWDGFDA
Ga0066903_1043773261	3300005764	Tropical Forest Soil	MSIMGTGIYGAAPRWTRIGAIMVVCSWYDALAADQLPRQIVGGWCLTSELPGKTYAYRRCKNGNY
Ga0066903_1070308601	3300005764	Tropical Forest Soil	VRLLGYEMSMETGIYSAAPQWARIGVIMVVGCWHDALAADQLPREIVGNWCVAIERMLPGKTYTYWRCKASNWDIIVRWDGFDAQETSCELNTIKRQGAAWLASFSCSG
Ga0066903_1074619731	3300005764	Tropical Forest Soil	METGIYGAAPQWARISVIMVVASWHDALAADQLPREIVGNWCVAIEQMLRAQTYPYRRCKDSNWDIIVRWDGFDAQETSCELNTI
Ga0070717_101689164	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSMETGIYGAAPQWARIGVIMVVASWHDALAADELPREIVGNWCVAIERMLPGKTYTYRRCKDSNWDIIVRWDGFDAQETSCELNTIKRQGA
Ga0070717_104553593	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VRSLGHDMSIMRTGIYGATPQWARIGAIMVVCAGQDALAADELPRQIIGHWCLTSEAMLPDTYAYRRCKDNNWDIIVRWAGFDAQETSCNLNKIERRRAAWLANFSCSGSRGKLARGG*
Ga0075367_108096321	3300006178	Populus Endosphere	VRSLGYDMSIMRTGIYGATPQWARIGAIMVVCACHDALAADELPQQIIGHWCLTSEAMLPDTYAYRRCKDNNWDIIVRWAGFDAQETSCN
Ga0075429_1005906872	3300006880	Populus Rhizosphere	MSIIGTGIYGTTPQWARVGALMVVCSCHDALAADQLPRQILGAWCLTSEGMLPERYAYRHCKDNNWDIIVRWDGFDAQET
Ga0075418_106272323	3300009100	Populus Rhizosphere	METGIYGATHQWARIGVMMVVCSWHDALAADQLPREIVGNWCLAIERMLPETYAYRRCKDSRYHIIVRPDGFDAQETSCQVNKI
Ga0126380_111715371	3300010043	Tropical Forest Soil	METGIYHAAPQWARIGVIMVVGSWYDALAADQLPREIVGNWCVAIERMLPGKTYTYWRCKDSNWDIIVRWDGFDAQETSCELNTIKRQGAAWLGNF
Ga0126384_106791341	3300010046	Tropical Forest Soil	MSMETGNYGATPQWARISVIMVVASWHDALAADQLPREIVGNWCVAIEQMLREQKYPYRRCKDSNWDIIVRWDGFDAQETSCELNTIKRQGA
Ga0126384_122308851	3300010046	Tropical Forest Soil	METGIYRAAPQWARIGVIMVAGSWYDALAADQLPREIVGNWCVAIERMLPGKTYTYWRCKDSNWDIIVRWDGF
Ga0126382_114429942	3300010047	Tropical Forest Soil	MSMETGIYGAAPQWARISVIMVVASWHDALAADQLPREIIGNWCVAIEQMLREPTYHYRRCKDSNWDIIVRWDGFDAQ
Ga0126382_122388452	3300010047	Tropical Forest Soil	MRSLGYDMSMGTGIYSAAPQWARIGVIMVVGCWHDALAADQLPREIVGNWCVAIERMLPGKTYTYWRCKDSNWDIIVRWDG
Ga0126373_105759342	3300010048	Tropical Forest Soil	MTIMGTGIYGATPRWTRIGAIMVVCFWYDALAADQLPRQIVGGWCLTSERPGKTYAYRRCKNGNYDIIVRWDGFDAQETSCEL
Ga0126370_111800482	3300010358	Tropical Forest Soil	MTGRPAGRGESRAFLFSRRSLGYDMSMGTGIYSAAPQWARIGVIMVVGCWHDALAADQLPREIVGNWCVAIERMLPGKTYTYWRCKDSNWDIIVRWDGFDAQETSCELNTIKRQG
Ga0126376_125791151	3300010359	Tropical Forest Soil	MSMETGIYGAAPQWARISVIMVVASWHDTLAADQLPREIVGNWCVAIEQMLREQKYPYRRCKDSNWDIIVRWDGFDAQETSCELNTIKRQ
Ga0126372_124333131	3300010360	Tropical Forest Soil	MSIMGTGIYGAAPRWTRIGAIMVVCSWYDALAADQLPRQIVGGWCLTSELPGKTYAYRRCKN
Ga0126372_131593062	3300010360	Tropical Forest Soil	MRSLGYDMSMGTGIYSAAPQWARIGVIMVVGCWHDALAADQLPREIVGNWCVAIERMLPGKTYTYWRCKDSNWDIIVRWDGF
Ga0126378_115666242	3300010361	Tropical Forest Soil	MSPSIADERRMTDHWARIGAIMVVCSWHDALAADQLPREIVGSWCLAIEQMLREQTYPYRRCKDSNYDIIVRWDGFDAQETSCELNTIKRQGAAWLASFGCSGAGLIPSP*
Ga0126377_117617751	3300010362	Tropical Forest Soil	MSMETGIYRAAPQWARIGVIMVAGSWYDALAADQLPREIVGNWCVAIERMLPGKTYTYWRCKDSNWDIIVRWDGFDAQETSCELNTIKRQGAAWLASFGCSGAGLTWLED
Ga0126379_117720663	3300010366	Tropical Forest Soil	MGFYLAAFRKGLNDAHVGCDMSIMGTGIYGATPRWTRIGAIIVMCFWYDALAADQLPRQIVGGWCLTSELPGKTYAYRRCKNGNYDIIVRWDGFDAQETSCELNTIKRQGA
Ga0126383_110876081	3300010398	Tropical Forest Soil	MSIMGTGIYGAAPRWTRIGAIMVVCFWYDALAADQLPRQIVGGWCLTSELPGKTYAYRRCKNGNYDIIVRWDGFDAQETSCELNTIKRQGAA
Ga0126383_110891271	3300010398	Tropical Forest Soil	MSPSIADERRMTDHWARIGAIMVVCSWHDALAADQLPREIVGSWCLAIEQMLREQTYPYRRCKDSNYDIIVRWEGFDAQETSCELNTIKRQGAAWLASFG
Ga0126383_114759532	3300010398	Tropical Forest Soil	MSMGTGIYSATPQWARIGIIMVVGSWHDAFAADQLPREIVGNWCVAIERMLPGKTYTYWRCKDSNWDIIV
Ga0137364_107909732	3300012198	Vadose Zone Soil	MSMETGIYGAAPQWARIGVIMVVASWHDALAADELPREIVGNWCVAIERMLPGKTYTYRRCKDSNWDIIVRWDGFDAQE
Ga0137383_112775732	3300012199	Vadose Zone Soil	MSMETGIYGAAPQWARIGVIMVVASWHDALAADELPREIVGNWCVAIERMLPGKTYTYRRCKDSNWDIIVRWDGFDAQETSCELNT
Ga0137382_111368521	3300012200	Vadose Zone Soil	MSIIGTAVYGAMPQWAGIGAIVLVCSCYDALAVDQLPRQIIGVWCLTSEAMLPETYAYRRCKDNNWDIIVRWDGFDAQETSCNLNKIEHQGAA
Ga0137365_101364961	3300012201	Vadose Zone Soil	MSMGTGVYSAAPQWARIGVIMVVGSWHDALAADQLPREIVGNWCVAIERMLPGKTYTYWRCKDSNWDIIVRWDGFDAQETSCELNTIKRQG
Ga0137362_107638943	3300012205	Vadose Zone Soil	MSMETGIYGAAPQWARIGVIMVVASWHDALAADQLPREIVGGWCLAIEQMSREQTYPYRRCKDSNYDIIVRWDGFDAQET
Ga0137380_113924201	3300012206	Vadose Zone Soil	MNREGLGSMNTRICSAAPQIGVIMVVCSWHGALAADQLPREIVGNWCLAFERTLPQTKYAYRRCKDSSSDII
Ga0137379_110268141	3300012209	Vadose Zone Soil	MSMETGIYEAAPQWARIGVIMAVCSWHNASAADQLPPEMVGGWCLAIERMLPGKTYTYWRCKDSNW
Ga0137377_108198002	3300012211	Vadose Zone Soil	MSMETGIYGAAPQWARIGVIMVVASWHDALAADELPREIVGNWCVAIERMLPGKTYTYRRCKDSNWDIIVRW
Ga0137377_109055902	3300012211	Vadose Zone Soil	MSIIGTGIYGAMPQWARIGAMMAVCSCHDALAADQLPPQIVGVWCLTSEGMLPGETYAYRRCKDHNWDIIVYRDGFDAQETSCNLNRIERQGAAWLASFGCSGAGL
Ga0137377_119600591	3300012211	Vadose Zone Soil	MSMGTGIYSAAPQWARIGVIMVVGSWHDALGADQLPREIVGNWCLAIERMLPETYPYRRCKDSSYHIIVRPDGFDAQETSCEVNKIER
Ga0137372_107023752	3300012350	Vadose Zone Soil	MSIIGTAVYGAMPQWARIGAIVVCSCHGAIAADQLPRQIIGVWCLRSEGMLLETYSYRRCKDNNWDIIVRRDGFDAQETSCNLNKIERQDTA*
Ga0137371_106753701	3300012356	Vadose Zone Soil	MSMGTGVYSAAPQWARIGVIMVVGAWHDALAADQLPREIVGNWCVAIERMLPGKTYTYWRCKDSN
Ga0137371_109396571	3300012356	Vadose Zone Soil	MSMGTGVYSAAPQWARIGVIMVVGSWHDALAADQLPREIVGNWCVAIERMLPGKTYTYWRCKDSN
Ga0137375_113893972	3300012360	Vadose Zone Soil	METGIYGATLQWARIGVIMVACSWHDALGADQLPREIVGNWCLEIERMLPETYAYRRCKDSSYHIIVRADGFDAQETSCEVNKIGRQGAAWLA
Ga0137373_109263741	3300012532	Vadose Zone Soil	MPQWAGIGAIVLVCSCYDALAVDQLPRQIIGVWCLTSEAMLPETYAYRRCKDNNWDLIVSWDAFDAQETSCNLNKIERQGAAWLASFSC*
Ga0137359_112026511	3300012923	Vadose Zone Soil	METGIYGAAPQWARISVIMVVASWHDALAADQLPREIVGNWCVAIEQMLREQTYPYRRCQDSNWDIIVRWDGFDAQETSCELNTIKRQGAAWLASFGCSG
Ga0126375_121013952	3300012948	Tropical Forest Soil	MSMETGIYRAAPQWARIGVIMVVGSWYDALAADQLPREIVGNWCVAIERMLPGKTYTYWRCKDSNWDIIVRWDGF
Ga0164302_116310371	3300012961	Soil	MDPGIYGAAPQWARISVIMVVASWHDALAADQLPREIVGNWCVAIEQMLREQTYPYRRCKDSNWDIIVRWDGFDAQETSCELNTIKRQGAAWLASFGCSGAGLTWLEDDEIRV
Ga0126369_104560231	3300012971	Tropical Forest Soil	MIVLVMTGRPAGRGESRAFLFSRRSLGYDMSMGTGIYCAAPQWARIGVIMVVGSWHDALAANQLPREIVGNWCLAIERMLPGKRYTYWRCKDSNWDIIVRWDGFDAQETGCELNTIKR
Ga0134085_104991231	3300015359	Grasslands Soil	MSIIGTGIYGAMPQWARIGAMMAVCSCHDALAADQLPRESVGNWCVAIERMLPGKTYTYRRCKDSNWDIIVRWDGFDA
Ga0182041_102778482	3300016294	Soil	MRSSGYDMSMGTGIYSAAPQWARIGVIMVVGCWHDALAAAQLPREIVGNWCVAIERMLPGKTYTYWRCKDSNW
Ga0182032_109616642	3300016357	Soil	METGIYGATLQWARIGVIMVVCSWHDALGAAQLPREIVGNWCLAIERMLPETYAYRRCKD
Ga0182032_111092561	3300016357	Soil	MRSLGYDMSMGTGIYSAAPQWARIGVIMVVGCWHDALAADQLPREIVGNWCVAIERMLPGKTYTYWRCKDSNWDIIVRWDGFDAQETSCELNTIKRQGAAW
Ga0182034_102714812	3300016371	Soil	MFGALKGLNDAHVGCDMSIMGTGIYGATPRWTRIIGAIIVVCFWYDALATDQLPRRIVGGWCLTSELPGKTYAYRRCKNGNYDIIVRWDGFDAQETSCELNT
Ga0182034_110399842	3300016371	Soil	METGIYGAAPQWARISVIMVVASWHDALAADQLPREIVGNWCVAIEQMLREQKYPYRRCKDSNWDIIVRWDGFDAQETSCEL
Ga0182039_108167952	3300016422	Soil	METGIYGAAPQWAGISVIMVVASWHDALAADQLPREIVGNWCVAIEQMLREQKYPYRRCKDSNWDIIVRWDGFDAQETSCELNT
Ga0182038_108087891	3300016445	Soil	METGIYGAAPQWARISVIMVVASWHDALAADQLPREIVGNWCVAIEQMLREQKYPYRRCKDSNWDIIVRWDGFDAQETSCELNTIKRQGAAWLASFG
Ga0066662_119927402	3300018468	Grasslands Soil	MSMETGIYGAAPQWARIGVIMVVASWHDALAADELPREIVGNWCVAIERMLPGKTYTYRRCKDSNWDIIVRWDGFDAQETSCELN
Ga0193728_12897001	3300019890	Soil	VRSLGHDMSIMRTGIYGAPPQWARIGAIMVLCAGQDALAADELPRQIIGNWCLTSEAMLPNTYAYRRCKNNNWDIIVRWAGFDA
Ga0210400_111558371	3300021170	Soil	VRSLGHDMSIMRTGIYGATPQWARIGAIMVVCACQDALAADELPRQIIGHWCLTSEAMLPDTYAYRRCKDNNWDIIVRWAGFDAQETSCNLNKIERRRAAWLANFSCSGAGVSW
Ga0126371_121841931	3300021560	Tropical Forest Soil	MIVLVMTGRPAGRGESRAFLFSRRSLGYDMSMGTGIYCAAPQWARIGVIMVVGSWHDALAANQLPREIVGNWCLAIERMLPGKRYTYWRCKDSNWDIIVRWDGFDAQETSCELNTIKRQGAAWLA
Ga0126371_124826831	3300021560	Tropical Forest Soil	VRSLGYDMSMETGIYRAAPQWARIGVIMVAGSWYDALAADQLPREIVGNWCVAIERMLPGKTYTYWR
Ga0126371_127189042	3300021560	Tropical Forest Soil	MSIMGTGIYGAAPRWTRIGAIMVVCFWYDALAADQLPRQIVGGWCFTSELPGKTYAYRRCKNGNYDIIVRWDGFDAQETSCELNTI
Ga0207646_115121982	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	METGIYGAAPQWARISVIMFVASWHDALAADQLPREIVGNRCVAIEQMLREQTYPYRRCKDSNWDIIVRWDGFDAQETSCELNTIKRQGAAWLPSFGCS
Ga0207646_117530172	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MSSPRTWPSDHWARIGAIMVVCSWHDALAADELPREIVGNWCVAIERMLPGKTYTYRRCKDSNWDIIVRWDGFDAQETSCEL
Ga0209074_104752691	3300027787	Agricultural Soil	VRSLGYDMSIMRSGIYGATPQWACIGAIMVVCACHDALAADELPQQIIGHWCLTSEAMLPDTYAYRRCKDNWDILVRWAGFDAQETSCNLNKIDRRGGAWLASFSCSGAG
Ga0307292_103339201	3300028811	Soil	MSMETGIYGATPQWARIGVIMVVCSCHDALAADQLPREIVGNWCLAIERMLPETLAYRRCKDSNYDIIARPDGFDAQETSCELNKLERQG
Ga0307302_103583531	3300028814	Soil	MSMETGIYGATPQWARIGVIMVVCSCHDALAADQLPREIVGNWCLAIERMLPETLAYRRCKDSNYGAPGRL
Ga0318528_104169402	3300031561	Soil	MRSLGYDMSMGTGIYSAAPQWARIGVIMVVGCWHDALAADQLPREIVGNWCVAIERMLPGKTYTYWRCKDSNWDIIVRWDGFDAQ
Ga0318573_105252401	3300031564	Soil	MRSSGYDMSMGTGIYSAAPQWARIGVIMVVGCWHDALAADQLPREIVGNWCVAIERMLPGKTYTYWRCKDSNWDIIVRWDGFDAQETGCELNTIKRQGAAWLASFS
Ga0310915_102519252	3300031573	Soil	MFGALKGLNDAHVGCDMSIMGTGIYGATPRWTRIIGAIIVVCFWYDALATDQLPRRIVGGWCLTSELPGKTYAYRRCKNGNYDIIVRWDGFDAQETSCELNTIKRQGAAWLASFGCSGA
Ga0318542_101414211	3300031668	Soil	MLSIMGTGIYGAAPRWTRIGAIMVVCFWYDALAADQLPRQIVGGWCLTSELPGKTYAYRRCKNGNYDIIVRWDGFDAQETSCELNTIKHQGAAWLASFGCSGAG
Ga0318572_105684321	3300031681	Soil	MRSSGYDMSMGTGIYSAAPQWARIGVIMVVGCWHDALAADQLPREIVGNWCVAIERMLPGKTYTYWRCKDSNWDII
Ga0306917_100641107	3300031719	Soil	MRSSGYDMSMGTGIYSAAPQWARIGVIMVVGCWHDALAADQLPREIVGNWCVAIERMLPGKTYTYWRCKDSNWDIIVRWDGFDAQETGCELNTIKRQGAAWLASFSCSGAGLTWLEDDEI
Ga0306917_108160501	3300031719	Soil	MFGALKGLNDAHVGCDMSIMGTGIYGATPRWTRIIGAIIVVCFWYDALATDQLPRRIVGGWCLTSELPGKTYAYRRCKNGNYDIIVRWDGFDAQETSCELNTIK
Ga0306918_100215971	3300031744	Soil	METGIYGAAPQWARISVIMVVASWHDALAADQLPREIVGNWCVAIERMLPGKTYTYRRCKDSNWDIIVRWDGFDAQ
Ga0306918_103777722	3300031744	Soil	MFGALKGLNDAHVGCDMSIMGTGIYGATPRWTRIIGAIIVVCFWYDALATDQLPRRIVGGWCLTSELPGKTYAYRRCKNGNYDIIVRWDGFDAQETSCELNTIKHQ
Ga0318521_101652763	3300031770	Soil	MRSSGYDMSMGTGIYSAAPQWARIGVIMVVGCWHDALAADQLPREIVGNWCVAIERMLPGKTYTYWRCKDSNWDIIVRWDGFDAQETGCELN
Ga0318576_106395151	3300031796	Soil	METGIYGAAPQWAGISVIMVVASWHDALAADQLPREIVGNWCVAIERMLPGKTYTYRRCKDSNWDIIVRWDG
Ga0318497_106505932	3300031805	Soil	METGIYGAAPQWARISVIMVVASWHDALAADQLPREIVGNWCVAIEQMLREQKYPYRRCKDSNWDIIVRWDGFDAQETSCELNTIKRQGAAWLASFGCSGA
Ga0307473_111490362	3300031820	Hardwood Forest Soil	MSMETGIYGTAPQWARIGVIMVVASWHDALAADELPREIVGNWCVAIERMLPGKTYTYRRCKDSNWDIIVRWDGFDAQETSCELNTIK
Ga0318511_105090792	3300031845	Soil	MRSSGYDMSMGTGIYSAAPQWARIGVIMVVGCWHDALAADQLPREIVGNWCVAIERMLPGKTYTYWRCKDSNWDIIVRWDGFDAQETSC
Ga0306919_104326992	3300031879	Soil	MFGALKGLNDAHVGCDMSIMGTGIYGATPRWTRIIGAIIVVCFWYDALATDQLPRRIVGGWCLTSELPGKTYAYRRCKNGNYDIIVRWDGFDAQETSCELNTIKHQGAAW
Ga0318520_101848731	3300031897	Soil	MRSSGYDMSMGTGIYSAAPQWARIGVIMVVGCWHDALAADQLPREIVGNWCVAIERMLPGKTYTYWRCKDSNWDIIVRWDGFDAQETGCELNTIKRQGAAWLASFSCSGAGLTWLE
Ga0318530_102035791	3300031959	Soil	METGIYGAAPQWARISVIMVVASWHDALAADQLPREIVGNWCVAIEQMLREQTYPYRRCKDSNW
Ga0318507_104173321	3300032025	Soil	METGIYGAAPQWARISVIMVVASWHDALAADQLPREIVGNWCVAIERMLPGKTYTYRRCKDSNWDIIVRWDGFDAQETSCELNTIKRQGAAWLASFGCSGAGLTWLE
Ga0310911_103303831	3300032035	Soil	METGIYGAAPQWAGISVIMVVASWHDALAADQLPREIVGNWCVAIEQMLREQKYPYRRCKDSN
Ga0318545_103760961	3300032042	Soil	METGIYGAAPQWAGISVIMVVASWHDALAADQLPREIVGNWCVAIERMLPGKTYTYRRCKDSNWDIIVRWDGFDAQE
Ga0318506_100157111	3300032052	Soil	VRSLGYDMSMGTGVYSAAPQWARIGVIMVVGCWHDALAADQLPREIVGNWCVAIERMLPGKTYTYWRCKDSNWDIIVRWDGFDA
Ga0318510_102598301	3300032064	Soil	MRSSGYDMSMGTGIYSAAPQWARIGVIMVVGCWHDALAADQLPREIVGNWCVAIERMLPGKTYTYWRCKDSNWDIIVRWDGFDAQETGCELNTIKRQGAAWLAS
Ga0318510_104500902	3300032064	Soil	METGIYGAAPQWAGISVIMVVASWHDALAADQLPREIVGNWCVAIEQMLREQKYPYRRCKDSNWDIIVRWDGFD
Ga0306924_103315201	3300032076	Soil	METGIYGAAPQWAGISVIMVVASWHDALAADQLPREIVGNWCVAIERMLREQKYPYRRCKDSNWDIIVRWDGFDAQETSCELNT
Ga0306924_104277421	3300032076	Soil	MFGALKGLNDAHVGCDMSIMGTGIYGTTPRWTRIGAIIVVCFWYDALAADQLPRQIVGGWCLTSERPGKTYAYRRCKNGNYDIIVRWDGFDAQETSCELNTIKHQGAAWLASFGCSGAGLSWLEDDE
Ga0306920_1009634123	3300032261	Soil	MRSLGYDLSMGTGVYSAAPQWARIGVIMVVGCWHDALAADQLPREIVGNWCVAIERMLPGKTYTY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099553

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences