Metagenome Family F099602

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099602
Family Type	Metagenome
Number of Sequences	103
Average Sequence Length	56 residues
Representative Sequence	MNSNYVFLCGVMWCRYGQQEAGSELMRAAQEEDPDVSALALAMLQEGCRSLPQFRRVN
Number of Associated Samples	71
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	82.52 %
% of genes near scaffold ends (potentially truncated)	28.16 %
% of genes from short scaffolds (< 2000 bps)	57.28 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.74

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.146 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (33.010 % of family members)
Environment Ontology (ENVO)	Unclassified (34.951 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (43.689 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.33% β-sheet: 0.00% Coil/Unstructured: 47.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.74
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.74
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.118.1.0: automated matches	d4b8ja_	4b8j	0.73737
a.118.1.19: Exportin HEAT-like repeat	d1w9ca_	1w9c	0.72965
a.118.1.1: Armadillo repeat	d7cyla_	7cyl	0.72187
a.118.1.0: automated matches	d3vyca_	3vyc	0.72173
a.118.1.10: Clathrin adaptor core protein	d6qh5b_	6qh5	0.71802

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF01258	zf-dskA_traR	11.65
PF00926	DHBP_synthase	7.77
PF07731	Cu-oxidase_2	4.85
PF02628	COX15-CtaA	2.91
PF01694	Rhomboid	2.91
PF00072	Response_reg	1.94
PF00873	ACR_tran	1.94
PF07885	Ion_trans_2	1.94
PF02321	OEP	1.94
PF01965	DJ-1_PfpI	1.94
PF02518	HATPase_c	1.94
PF07730	HisKA_3	1.94
PF00171	Aldedh	1.94
PF12710	HAD	1.94
PF00745	GlutR_dimer	1.94
PF00231	ATP-synt	0.97
PF04255	DUF433	0.97
PF13561	adh_short_C2	0.97
PF08546	ApbA_C	0.97
PF07681	DoxX	0.97
PF00507	Oxidored_q4	0.97
PF02771	Acyl-CoA_dh_N	0.97
PF13186	SPASM	0.97
PF03729	DUF308	0.97
PF02954	HTH_8	0.97
PF12146	Hydrolase_4	0.97
PF00355	Rieske	0.97
PF03100	CcmE	0.97
PF01568	Molydop_binding	0.97
PF13231	PMT_2	0.97
PF01513	NAD_kinase	0.97
PF00119	ATP-synt_A	0.97
PF02322	Cyt_bd_oxida_II	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG1734	RNA polymerase-binding transcription factor DksA	Transcription [K]	11.65
COG0108	3,4-dihydroxy-2-butanone 4-phosphate synthase	Coenzyme transport and metabolism [H]	7.77
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	4.85
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	3.88
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	2.91
COG1612	Heme A synthase	Coenzyme transport and metabolism [H]	2.91
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	1.94
COG0373	Glutamyl-tRNA reductase	Coenzyme transport and metabolism [H]	1.94
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	1.94
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	1.94
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	1.94
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	1.94
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	1.94
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	1.94
COG0224	FoF1-type ATP synthase, gamma subunit	Energy production and conversion [C]	0.97
COG0356	FoF1-type ATP synthase, membrane subunit a	Energy production and conversion [C]	0.97
COG0838	NADH:ubiquinone oxidoreductase subunit 3 (chain A)	Energy production and conversion [C]	0.97
COG1294	Cytochrome bd-type quinol oxidase, subunit 2	Energy production and conversion [C]	0.97
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	0.97
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.97
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.97
COG2332	Cytochrome c biogenesis protein CcmE	Posttranslational modification, protein turnover, chaperones [O]	0.97
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	0.97
COG3247	Acid resistance membrane protein HdeD, DUF308 family	General function prediction only [R]	0.97
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.15 %
Unclassified	root	N/A	4.85 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.15 %
Unclassified	root	N/A	4.85 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.15 %
Unclassified	root	N/A	4.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	57.28 %
Unclassified	root	N/A	4.85 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.97 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	27.18 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	16.50 %
Unclassified	root	N/A	4.85 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.18 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	15.53 %
Unclassified	root	N/A	4.85 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.18 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	15.53 %
Unclassified	root	N/A	4.85 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.18 %
Unclassified	root	N/A	4.85 %
Silvibacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium	0.97 %
Acidicapsa	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa	0.97 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.97 %
Acidisarcina	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina	0.97 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.18 %
Unclassified	root	N/A	4.85 %
Acidisarcina polymorpha	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	0.97 %
Acidicapsa acidisoli	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli	0.97 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	0.97 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.97 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_103886762	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300000789\|JGI1027J11758_12881544	All Organisms → cellular organisms → Bacteria	1915	Open in IMG/M
3300001593\|JGI12635J15846_10295050	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1017	Open in IMG/M
3300001867\|JGI12627J18819_10012039	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3430	Open in IMG/M
3300002245\|JGIcombinedJ26739_100184692	All Organisms → cellular organisms → Bacteria	1973	Open in IMG/M
3300003219\|JGI26341J46601_10019210	All Organisms → cellular organisms → Bacteria	2241	Open in IMG/M
3300003368\|JGI26340J50214_10143685	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	599	Open in IMG/M
3300004152\|Ga0062386_100070589	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	2654	Open in IMG/M
3300004152\|Ga0062386_100611812	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	890	Open in IMG/M
3300004152\|Ga0062386_101606312	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300004635\|Ga0062388_102922253	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300005536\|Ga0070697_100924305	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	774	Open in IMG/M
3300005542\|Ga0070732_11042517	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300006059\|Ga0075017_100027475	All Organisms → cellular organisms → Bacteria	3734	Open in IMG/M
3300006176\|Ga0070765_100156622	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2037	Open in IMG/M
3300006176\|Ga0070765_102034642	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300009628\|Ga0116125_1000437	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	19552	Open in IMG/M
3300009632\|Ga0116102_1118791	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	747	Open in IMG/M
3300009665\|Ga0116135_1001777	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10377	Open in IMG/M
3300010339\|Ga0074046_10010593	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6881	Open in IMG/M
3300010339\|Ga0074046_10087289	All Organisms → cellular organisms → Bacteria → Acidobacteria	2021	Open in IMG/M
3300010339\|Ga0074046_10095785	All Organisms → cellular organisms → Bacteria	1919	Open in IMG/M
3300010341\|Ga0074045_10211653	All Organisms → cellular organisms → Bacteria → Acidobacteria	1295	Open in IMG/M
3300014164\|Ga0181532_10001837	All Organisms → cellular organisms → Bacteria	20201	Open in IMG/M
3300017925\|Ga0187856_1003902	All Organisms → cellular organisms → Bacteria → Acidobacteria	10143	Open in IMG/M
3300017943\|Ga0187819_10356038	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	845	Open in IMG/M
3300017993\|Ga0187823_10080330	All Organisms → cellular organisms → Bacteria	946	Open in IMG/M
3300018006\|Ga0187804_10345796	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	653	Open in IMG/M
3300018012\|Ga0187810_10058214	All Organisms → cellular organisms → Bacteria	1467	Open in IMG/M
3300018034\|Ga0187863_10725172	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300020579\|Ga0210407_10774485	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	741	Open in IMG/M
3300020581\|Ga0210399_10059563	Not Available	3079	Open in IMG/M
3300020581\|Ga0210399_10383767	All Organisms → cellular organisms → Bacteria → Acidobacteria	1172	Open in IMG/M
3300021171\|Ga0210405_10008836	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8682	Open in IMG/M
3300021171\|Ga0210405_10048178	All Organisms → cellular organisms → Bacteria	3376	Open in IMG/M
3300021178\|Ga0210408_10690590	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	804	Open in IMG/M
3300021180\|Ga0210396_11354126	Not Available	590	Open in IMG/M
3300021372\|Ga0213877_10068871	All Organisms → cellular organisms → Bacteria → Acidobacteria	1042	Open in IMG/M
3300021432\|Ga0210384_10105996	All Organisms → cellular organisms → Bacteria	2521	Open in IMG/M
3300021432\|Ga0210384_10348228	Not Available	1334	Open in IMG/M
3300021439\|Ga0213879_10274428	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300021479\|Ga0210410_10000389	All Organisms → cellular organisms → Bacteria	51549	Open in IMG/M
3300021479\|Ga0210410_10711403	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	886	Open in IMG/M
3300021559\|Ga0210409_10978302	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	720	Open in IMG/M
3300025612\|Ga0208691_1001348	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8610	Open in IMG/M
3300025915\|Ga0207693_10014085	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6439	Open in IMG/M
3300026328\|Ga0209802_1231375	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300027548\|Ga0209523_1009417	Not Available	1775	Open in IMG/M
3300027795\|Ga0209139_10004039	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5528	Open in IMG/M
3300027812\|Ga0209656_10000018	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	128618	Open in IMG/M
3300027812\|Ga0209656_10029154	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	3292	Open in IMG/M
3300027824\|Ga0209040_10000007	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	172756	Open in IMG/M
3300027895\|Ga0209624_10065128	All Organisms → cellular organisms → Bacteria	2346	Open in IMG/M
3300027895\|Ga0209624_10242449	All Organisms → cellular organisms → Bacteria	1198	Open in IMG/M
3300027911\|Ga0209698_10540928	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300028747\|Ga0302219_10138135	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	931	Open in IMG/M
3300028871\|Ga0302230_10371952	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300028906\|Ga0308309_10068378	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2638	Open in IMG/M
3300029999\|Ga0311339_10002840	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	29655	Open in IMG/M
3300030503\|Ga0311370_11609614	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300031057\|Ga0170834_105636239	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1504	Open in IMG/M
3300031720\|Ga0307469_10182903	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1614	Open in IMG/M
3300031720\|Ga0307469_10420675	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli	1147	Open in IMG/M
3300031740\|Ga0307468_100414377	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1034	Open in IMG/M
3300031962\|Ga0307479_10093633	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2915	Open in IMG/M
3300032180\|Ga0307471_100070018	All Organisms → cellular organisms → Bacteria	3020	Open in IMG/M
3300032180\|Ga0307471_102247587	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	687	Open in IMG/M
3300032770\|Ga0335085_10000255	All Organisms → cellular organisms → Bacteria	166849	Open in IMG/M
3300032770\|Ga0335085_10012207	All Organisms → cellular organisms → Bacteria → Acidobacteria	12675	Open in IMG/M
3300032770\|Ga0335085_10031535	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7380	Open in IMG/M
3300032770\|Ga0335085_10118374	All Organisms → cellular organisms → Bacteria → Acidobacteria	3386	Open in IMG/M
3300032770\|Ga0335085_10224232	All Organisms → cellular organisms → Bacteria	2281	Open in IMG/M
3300032770\|Ga0335085_12414073	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300032782\|Ga0335082_10024952	All Organisms → cellular organisms → Bacteria	6395	Open in IMG/M
3300032782\|Ga0335082_10113888	All Organisms → cellular organisms → Bacteria	2663	Open in IMG/M
3300032783\|Ga0335079_10065896	All Organisms → cellular organisms → Bacteria	4126	Open in IMG/M
3300032783\|Ga0335079_10077939	All Organisms → cellular organisms → Bacteria	3767	Open in IMG/M
3300032783\|Ga0335079_10170035	All Organisms → cellular organisms → Bacteria	2435	Open in IMG/M
3300032783\|Ga0335079_12108549	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300032805\|Ga0335078_10418643	Not Available	1751	Open in IMG/M
3300032805\|Ga0335078_11041160	All Organisms → cellular organisms → Bacteria	964	Open in IMG/M
3300032805\|Ga0335078_11457845	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	768	Open in IMG/M
3300032828\|Ga0335080_10002295	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	19036	Open in IMG/M
3300032828\|Ga0335080_10314343	All Organisms → cellular organisms → Bacteria	1698	Open in IMG/M
3300032828\|Ga0335080_11098917	All Organisms → cellular organisms → Bacteria → Acidobacteria	804	Open in IMG/M
3300032829\|Ga0335070_10172597	All Organisms → cellular organisms → Bacteria	2177	Open in IMG/M
3300032829\|Ga0335070_10259700	All Organisms → cellular organisms → Bacteria → Acidobacteria	1698	Open in IMG/M
3300032892\|Ga0335081_10025809	All Organisms → cellular organisms → Bacteria → Acidobacteria	9486	Open in IMG/M
3300032893\|Ga0335069_10554975	All Organisms → cellular organisms → Bacteria	1324	Open in IMG/M
3300032895\|Ga0335074_10161708	All Organisms → cellular organisms → Bacteria	2810	Open in IMG/M
3300032895\|Ga0335074_11170240	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652	Open in IMG/M
3300032898\|Ga0335072_10113863	All Organisms → cellular organisms → Bacteria	3419	Open in IMG/M
3300032898\|Ga0335072_10229036	All Organisms → cellular organisms → Bacteria	2163	Open in IMG/M
3300032898\|Ga0335072_10346497	All Organisms → cellular organisms → Bacteria	1629	Open in IMG/M
3300032954\|Ga0335083_11094984	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300032955\|Ga0335076_10936258	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300033004\|Ga0335084_11619515	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300033134\|Ga0335073_10259964	All Organisms → cellular organisms → Bacteria → Acidobacteria	2109	Open in IMG/M
3300033134\|Ga0335073_10321501	All Organisms → cellular organisms → Bacteria → Acidobacteria	1846	Open in IMG/M
3300033134\|Ga0335073_10750953	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	1056	Open in IMG/M
3300033158\|Ga0335077_11170029	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300034124\|Ga0370483_0024650	All Organisms → cellular organisms → Bacteria → Acidobacteria	1797	Open in IMG/M
3300034195\|Ga0370501_0185283	All Organisms → cellular organisms → Bacteria → Acidobacteria	730	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.67%
Aquatic	Environmental → Aquatic	22.33%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.79%
Freshwater	Environmental → Aquatic → Freshwater	20.39%
Peat	Environmental → Terrestrial → Peat	3.88%
Sediment	Environmental → Aquatic → Sediment	1.94%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	38.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	24.27%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	20.39%
Loam	Environmental → Terrestrial → Soil → Loam	10.68%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	38.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.45%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	12.62%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.74%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.88%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.88%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	2.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	33.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.65%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	9.71%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.83%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.88%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.88%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	3.88%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.91%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.94%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.94%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	1.94%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.97%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009632	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025612	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10 (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028871	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_1	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M
3300034195	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1038867621	3300000364	Soil	MNSNYVFLCGVMWCRYGQQEAGSELMRAAQGEDPDVSALALAMLEEGCRSLPQFRRLN*
JGI1027J11758_128815443	3300000789	Soil	MNSDYVYLCGVMWCNYGQQEAGKELMRAAHCEDPDLSTLALAMLQEGFKSFQKFRRVELRGPLPVCV*
JGI12635J15846_102950502	3300001593	Forest Soil	MNSNYVFLCGVMWCQYGQQEAGSELMRAAQGEDPDVSALALAMLQEGCKSLSQFKRAN*
JGI12627J18819_100120391	3300001867	Forest Soil	ETNMNSNYVFLCGVMWCRFGQQEAGSELLRAIKSADPDLRALALAMLAKGCKSLQEDRKVH*
JGIcombinedJ26739_1001846921	3300002245	Forest Soil	MNSNYVFLCGVMWCKFCQQDAGRELMRAAQGEDPDLSALALAMLEEGCRSLPQF
JGI26341J46601_100192103	3300003219	Bog Forest Soil	MNGNYVFLCGLMWCKYGQQEAGSELMRAAQSEDPDLSALALAMLQEGCRSLPQFKRVN*
JGI26340J50214_101436851	3300003368	Bog Forest Soil	AQMSEDNMNSNYVFLCGLMWCKFGQQDAGSELMRAAQCEDPDLSALALAMLHEGCRSLPQFKRLN*
Ga0062386_1000705892	3300004152	Bog Forest Soil	MNSNYVFLCGLMWCKFGQQDAGSELMRAAQCEDPDLSALALAMLHEGCRSLPQFKRLN*
Ga0062386_1006118123	3300004152	Bog Forest Soil	MNSDYVFLCGVMWCRYGQQDAGSELVRAAQCENPDLSALALAMLQAGCRSFRLEHE*
Ga0062386_1016063121	3300004152	Bog Forest Soil	MDSDYVFLCGVMWCGYGQEDAGSELKRAAECDDPDLSSLALATLQEGYRSVPQLRAVN*
Ga0062388_1029222531	3300004635	Bog Forest Soil	FLCGVMWCRYGQQEAGSELMRAAQEEDPDVSALALAMLQEGCRSLPQFRRVN*
Ga0070697_1009243051	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MNSNYVFLCGVMWCRHGQQEAGSELMRAAQCEDPDLSALALAMLQEGCR
Ga0070732_110425172	3300005542	Surface Soil	MNSNYVFLCGVMWCRYGQQEAGSELMRAAQGEDPDVSALALAMLQEGCRSLPQFSRVN*
Ga0075017_1000274752	3300006059	Watersheds	MNSDYVFLCGVMWCRYGQKEAGHELMRAVKCEDPDLSTLALAMLQEGCRSVPPLARAN*
Ga0070765_1001566222	3300006176	Soil	MNSNYVFLCGVMWCRYGQQEAGSELMRAAQEEDPDVRALALAMLQEGCRSLPQFRRVN*
Ga0070765_1020346421	3300006176	Soil	MNSDYVFLCGLMWCKYGEQDAGSELLRAVKSADPDLSALALAMLAKGCSSLQQHRNV
Ga0116125_100043714	3300009628	Peatland	MNGNYVFLCGVMWCRYGQKDAGSKLMRAAQSDDPDLSALALAMLRKGCRSLPQSKRVN*
Ga0116102_11187911	3300009632	Peatland	MNSNYVFLCGVMWCQYGQQEAGSELMRAAECGDPDLSALALARLHEGCKSRPQFQRAN*
Ga0116135_100177711	3300009665	Peatland	MNGNYVFLCGVMWCRYGQKDAGSELMRAAQSDDPDLSALALAMLRKGCRSLPQSKRVN*
Ga0074046_100105936	3300010339	Bog Forest Soil	MWCKYGQQEAGSELMRAAQSEDPDLSALALAMLQEGCRSLPQFKRVN*
Ga0074046_100872892	3300010339	Bog Forest Soil	MNSNYVFLCGVMWCQYGQQDAGSELMRAAEGGDPDLSALALAMLHEGCKSRPQFQRAN*
Ga0074046_100957853	3300010339	Bog Forest Soil	MDSDYVFLCGVMWCGYGQEDAGSELKRAAECDDPDLSSLALAMLQEGYRSVPQLRAVN*
Ga0074045_102116533	3300010341	Bog Forest Soil	MWCKYGQQEAGSELMRAAQSEDPDLSALALAMLQEGCRSL
Ga0181532_1000183717	3300014164	Bog	MNSNYVFLCGVMWCRYGQQEAGSELMRAAQEEDPDVSALALAMLQEGCRSLPQFRRVN*
Ga0187856_10039024	3300017925	Peatland	MNSNYVFLCGVMWCQYGQQEAGSELMRAAECGDPDLSALALAMLHEGCKSRPQFQRAN
Ga0187819_103560381	3300017943	Freshwater Sediment	MNSNYVFLCGVMWCQYGQQEAGSELMRVAECGDPDLSALALAMLHEGCKSLPQFQRAN
Ga0187823_100803301	3300017993	Freshwater Sediment	MDSDYAFLCGVMWCQYGQPDAGSELLRAIKSVDPDLSALALAMLAKGCESLQESGKVN
Ga0187804_103457961	3300018006	Freshwater Sediment	MNSNYVFLCGVMWCQYGQQEAGSELMRAAEGSDPDLSALALAMLHEGCKSVPQFQRAN
Ga0187810_100582141	3300018012	Freshwater Sediment	MNSDYVFLCGVMWCRYGEQDAGSELIRAVECADPDVSALALAMLEEGCKSLPQFSQAN
Ga0187863_107251721	3300018034	Peatland	HLASSVLLMEPEANMNGNYVFLCGVMWCRYGQKDAGSELMRAAQSDDPDLSALALAMLRKGCRSLPQSKRVN
Ga0210407_107744851	3300020579	Soil	MNSDYVFLCGVMWCKYGEQDAGSELLRAVKSADPDLSALALAMLAKGCSSLQQHRNVNE
Ga0210399_100595632	3300020581	Soil	MNSNYVFLCGVMWCRYGQQEAGSELMRAAQGEDPDVSALALAMLEEGCRSLPQFRRVN
Ga0210399_103837671	3300020581	Soil	MNSDYVFLCGVMWCKYGEQDAGSELLRAVKSADPDLSALALAMLAKGCSSLQQHRNVNEG
Ga0210405_100088368	3300021171	Soil	MDSDYVFLCGVMWCRFGQQEAGEELLRAATSVGPDMRALACAMLARGCPSLEGFGKTDKP
Ga0210405_100481786	3300021171	Soil	GVMWCRYGQQEAGSELMRAAQGEDPDVSALALAMLEEGCRSLSQFRRVN
Ga0210408_106905901	3300021178	Soil	MNSDYVFLCGVMWCKYGEQDAGSELLRAVKSADPDLSALALAMLAKGCSS
Ga0210396_113541261	3300021180	Soil	RYGQQEAGSELMRAAQGEDPDVSALALAMLEEGCRSLSQFRRVN
Ga0213877_100688712	3300021372	Bulk Soil	MDSDYVYLCGVMWCSYGQHEAGEELIRAISCDDPNLSALALAMLQEGFKPRRTFGLPN
Ga0210384_101059962	3300021432	Soil	MNNNCVFLCGVMWCRYGQQEAGSELMRAAQGEEPDVSALALAMLEEGCRSLPQFRRMN
Ga0210384_103482281	3300021432	Soil	SMNSNYVFLCGVMWCRYGQQEAGSELMRAAQGEDPDVSALALAMLEEGCRSLSQFRRVN
Ga0213879_102744282	3300021439	Bulk Soil	MDTDYVYLCGIMWCSYGQQEAGEALMRAINCDDPNLSALAMAMLQEGFKPRQAFRYLN
Ga0210410_1000038939	3300021479	Soil	MNSDYVFLCGVMWCRYGQQDAASELIRAAQSEDPDLSALALAMLQNGCSSLPQFSEVN
Ga0210410_107114031	3300021479	Soil	MNSDYVFLCGLMWCKYGEQDAGNELLRAVKSADPDLSALALAMLAKGCSS
Ga0210409_109783021	3300021559	Soil	MNGDYVFLCGVMWCKYGEQDAGSELLRAVKSADPDLSALALAMLAKGCSS
Ga0208691_10013485	3300025612	Peatland	MNGNYVFLCGVMWCRYGQKDAGSELMRAAQSDDPDLSALALAMLRKGCRSLPQSKRVN
Ga0207693_100140859	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MNNNYVFLCGVMWCRYGQQEAGSELMRAAQCEDPDLSALALAMLQEG
Ga0209802_12313752	3300026328	Soil	MDSDYVFLCGVMWCKYGQQDAGNELLRAVKSTDPDLSALALAMLAKGC
Ga0209523_10094171	3300027548	Forest Soil	MNSNYVFLCGVMWCRFGQQEAGSELLRAIKSADPDLRALALAMLAKGCKSLQEDRKVH
Ga0209139_100040395	3300027795	Bog Forest Soil	MNSNYVFLCGVMWCQYGRQEAGSELMRAAQSGDPDLIALALAMLHEGCKSLPQFKRVN
Ga0209656_1000001847	3300027812	Bog Forest Soil	MNGNYVFLCGLMWCKYGQQEAGSELMRAAQSEDPDLSALALAMLQEGCRSLPQFKRVN
Ga0209656_100291542	3300027812	Bog Forest Soil	MSEDNMNSNYVFLCGLMWCKFGQQDAGSELMRAAQCEDPDLSALALAMLHEGCRSLPQFKRLN
Ga0209040_1000000723	3300027824	Bog Forest Soil	MWCKYGQQEAGSELMRAAQSEDPDLSALALAMLQEGCRSLPQFKRVN
Ga0209624_100651283	3300027895	Forest Soil	MNSNYVFLCGVMWCKFCQQDAGRELMRAAQGEDPDLSALALAMLEEGCRSLPQFRRVN
Ga0209624_102424492	3300027895	Forest Soil	MDSDYVFLCGVMYYRFGQEEAGKELLRAATSVDPDMRALACAMLARGCASREEFGKTDRP
Ga0209698_105409282	3300027911	Watersheds	MNSDYVFLCGVMWCRYGQQEAGSELMRAAQGEDPDVSALALAMLKEGCRFLPQFRRVD
Ga0302219_101381352	3300028747	Palsa	MDSDYVFLCGVMWCGYGQEDAGSELMRAAQCDDPDLCSLALAMLQEGYRSVPQLRAVN
Ga0302230_103719521	3300028871	Palsa	EAGSELMRAAQEDDPDVRALALAMLQAGFRSLPQFRRVN
Ga0308309_100683782	3300028906	Soil	MNSNYVFLCGVMWCRYGQQEAGSELMRAAQEEDPDVRALALAMLQEGCRSLPQFRRVN
Ga0311339_1000284026	3300029999	Palsa	MDSDYVFLCGVMWCGYGQEDAGSELKRAAECDDPDLSSLALAMLQEGYRSVPQLRAVN
Ga0311370_116096141	3300030503	Palsa	AGSELKRAAECDDPDLSSLALAMLQEGYRSVPQLRAVN
Ga0170834_1056362392	3300031057	Forest Soil	MNSDYVFLCGVMWCRYGQQDAASELIRAAQSDDPDLSALALAMLQSGCSSLPQFSEVN
Ga0307469_101829032	3300031720	Hardwood Forest Soil	MNSDYVYLCGVMWCNYGQQEAGKELMRAAHCEDPDLSTLALAMLQEGFKSFQKFRRVELRGPLPVCV
Ga0307469_104206752	3300031720	Hardwood Forest Soil	MQLEVNMNSNYVFLCGVMWCRYGQQEAGSELMRAAQGEDPDVSALALAMLEEGCRFLPQFRRLN
Ga0307468_1004143772	3300031740	Hardwood Forest Soil	MNSDYVYLCGVMWCNYGQQEAGKELMRAAHCEDPDLSTLALAMLQEGFKSLQKFRRVELRGPLPVCV
Ga0307479_100936332	3300031962	Hardwood Forest Soil	MNSNYVFLCGVMWCRFGQQEAGSELLRAVKSADPDLRALALAMLAKGCKSLQEERNVH
Ga0307471_1000700183	3300032180	Hardwood Forest Soil	MDGDYVFLCGVMWCRYGQQDAGKELLRAATSPDADLSTLALAMLASGCKSLQRHSNVGRLHNLRAE
Ga0307471_1022475871	3300032180	Hardwood Forest Soil	MNSDYVFLCGVMWCKYGEQDAGSELLRAVKSADPDLSALALAMLAKGCSSLQQHR
Ga0335085_1000025571	3300032770	Soil	MNSNYVFLCGVMWCQYGQQEAGSELMRAAECGDPDLSALALAMLHEGCKSGPQFQRAN
Ga0335085_100122074	3300032770	Soil	MNSDYVFLCGVMWCRYGEQDAGSELIRAVECEDPDVSALALAMLEEGCKSLPQFSQAN
Ga0335085_100315353	3300032770	Soil	MNSDYVFLCGVMWCRYGQKEAGHELMRAVRSEDPDLSTLALAMLQEGCRSVPPLARSN
Ga0335085_101183744	3300032770	Soil	MSGDYVFLCGVMWCKYGQQDAGSELMRAAQCEDPDVSALALAMLQEGASTFYVFHE
Ga0335085_102242322	3300032770	Soil	MNSNYVFLCGVMWCQYGQQEAGSELMRAAECGDPDLSALALAMLHEGCKSLPQFQRAN
Ga0335085_124140731	3300032770	Soil	MNSDYVYLCGVMWCSYGQQEAGSELMRAAQCDDPDLSSLALAMLEEGCRSIPQLRAVN
Ga0335082_100249527	3300032782	Soil	MNSDYVFLCGVMWCSYGQQEAGSELMRAAQCDDPDLSSLALAMLEEGCRSIPQPRAVN
Ga0335082_101138882	3300032782	Soil	MNSDYVFLCGVMWCSYGQQEAGSELMRAAQCDDPDLSSLALAMLEEGCRSIPQLRAVN
Ga0335079_100658962	3300032783	Soil	MNSNYVFLCGVMWCQYGQEEAGSELIRAAQSADPDLSALALAMLQEGCKSLPQFKRVN
Ga0335079_100779393	3300032783	Soil	MNSDYVFLCGVIWCSYRQQEAGSELMRVAQCDDPDLSSLALAMLQEGCRSIPQLRAVN
Ga0335079_101700351	3300032783	Soil	MNSDYVFLCGVMWCRYGQQEAGSELMRAAQCDDPDLSSLALAMLQEGYRSIPQLRAVN
Ga0335079_121085491	3300032783	Soil	MDNNYVFLCGVMWCKYGQQEAGNELLRASLCDDPDLSALALAMLQEGYKPLPQSARVN
Ga0335078_104186433	3300032805	Soil	MNSNYVFLCGVMWCQYGQQEAGSELMRAAEGGDPDLSALALAMLHEGCKSLPQFQRAN
Ga0335078_110411601	3300032805	Soil	MNSDYVFLCGVMWCGYGQQEAGSELMRAAQCDDPDLSSLALAMLEEGC
Ga0335078_114578452	3300032805	Soil	MDSDYVFLCGVMWCRYGQQEAGNELLRASQCEDPDLSALALAMLQEGYKPLPQSAQVN
Ga0335080_100022952	3300032828	Soil	MNSDYVFICGVMWCRYGEQDAGSELIRAVECEDPDVSALALAMLEEGCKSLPQFSQAN
Ga0335080_103143432	3300032828	Soil	MNSEYVFLCGVMWCRYREEDACSELLRAAQCDDPDLSSLALAMLQEGYRSIPQLRAVN
Ga0335080_110989171	3300032828	Soil	MNSDYVFLCGVMWCSYGQQEAGSELMRAAQCDDPDLSPLALAMLEEGCRSIPQLRAVN
Ga0335070_101725973	3300032829	Soil	MNSDYVFLCGVMWCRYGQKEAGHELMRAVRSEDPDLSTLALAMLQEGCRSVPPLARAN
Ga0335070_102597003	3300032829	Soil	GDYVFLCGVMWCKYGQQDAGSELMRAAQCEDPDVSALALAMLQEGASTFYVFHE
Ga0335081_100258095	3300032892	Soil	MSGDCVFLCGVMWCKYGQQDAGSALVRAAQCEDPDVSALALAMLQEGASTFYVFQE
Ga0335069_105549753	3300032893	Soil	MNSNYVFLCGLMWCQYGQEEAGSELMRAAEGSDPDLSALALAMLHEGCKSVPQFQRAN
Ga0335074_101617085	3300032895	Soil	MNSNYVFLCGVMWCQYGQQEAGCELMRAAEGSDPDLSALALAMLHEGCKSLPQFQRAN
Ga0335074_111702402	3300032895	Soil	MNSNYVFLCGVMWCQYGQQEAGSELMRAAEGSDPDLSALALAMLHEGCKSLPQFQRAN
Ga0335072_101138632	3300032898	Soil	MDNNYVFLCGVMWCKYGQQEAGNELLRASQCDDPDLSALALAMLQEGYKPLPQSARVN
Ga0335072_102290362	3300032898	Soil	MDSDYVFLCGVMWCSYGQQEAGNELLRASQCEDPDLSALALAMLQEGYKPLPQSAQVN
Ga0335072_103464972	3300032898	Soil	MNSNYVFLCGVMWCQYGQQEAGSELIRAAEGSDPDLSALALAMLHEGCKSVPQFQRAN
Ga0335083_110949842	3300032954	Soil	MNSDYVFLCGVMWCSYGQQEAGSELMRAAQCDDPDLSSLALAMLEEGCRSIPQLR
Ga0335076_109362581	3300032955	Soil	QTMNSDYVFLCGVMWCRYGQQEARSELMRATQCDDPDLSSLALAMLQEGYRSIPQLRAVN
Ga0335084_116195152	3300033004	Soil	GEQEAGSELMRAAHCDDPDLSSLALAMLQEGYRSTPQLRAVN
Ga0335073_102599642	3300033134	Soil	MNSDYVFLCGVMWCRYGQQEAGSELMRAAECEDPDLSSLALAMLQEGYRSIPQLRAVN
Ga0335073_103215014	3300033134	Soil	MSRDYVFLCGVMWCKYGQQDAGSELMRAAQCEDPDVSALALAITFYVFHK
Ga0335073_107509532	3300033134	Soil	MNRNYVFLCGVMWCQYGQQEAGSELMRAAEGSDPDLSALALAMLHEGCKSV
Ga0335077_111700291	3300033158	Soil	LSPIEWEANMNSDYVFLCGVIWCSYRQQEAGSELMRVAQCDDPDLSSLALAMLQEGCRSIPQLRAVN
Ga0370483_0024650_1437_1613	3300034124	Untreated Peat Soil	MNSNYVFLCGVMWCQYGQQEAGSELMRAAQSGDPDLSALALAMLHEGRKSLPQFKRVT
Ga0370501_0185283_512_688	3300034195	Untreated Peat Soil	MDSDYVFLCGVMWCGYGQEDAGSELKRAAECDDPDLSSLALAMLQEGYRSGPQLRVVN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F099602

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences