NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F099704

Metagenome Family F099704

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F099704
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 46 residues
Representative Sequence MPDQTNAWKIRVKKGNYEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR
Number of Associated Samples 60
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Archaea
% of genes with valid RBS motifs 32.04 %
% of genes near scaffold ends (potentially truncated) 33.01 %
% of genes from short scaffolds (< 2000 bps) 73.79 %
Associated GOLD sequencing projects 49
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Archaea (95.146 % of family members)
NCBI Taxonomy ID 2157
Taxonomy All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(44.660 % of family members)
Environment Ontology (ENVO) Unclassified
(49.515 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(52.427 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 41.67%    β-sheet: 20.83%    Coil/Unstructured: 37.50%
Feature Viewer
Powered by Feature Viewer

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF13508Acetyltransf_7 3.88
PF13673Acetyltransf_10 1.94
PF05362Lon_C 1.94
PF00248Aldo_ket_red 0.97
PF08241Methyltransf_11 0.97
PF07282OrfB_Zn_ribbon 0.97
PF00004AAA 0.97
PF01037AsnC_trans_reg 0.97
PF00296Bac_luciferase 0.97
PF00988CPSase_sm_chain 0.97
PF00583Acetyltransf_1 0.97
PF14470bPH_3 0.97
PF00801PKD 0.97
PF01921tRNA-synt_1f 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG0466ATP-dependent Lon protease, bacterial typePosttranslational modification, protein turnover, chaperones [O] 1.94
COG0505Carbamoylphosphate synthase small subunitAmino acid transport and metabolism [E] 1.94
COG1067Predicted ATP-dependent proteasePosttranslational modification, protein turnover, chaperones [O] 1.94
COG1750Predicted archaeal serine protease, S18 familyGeneral function prediction only [R] 1.94
COG3480Predicted secreted protein YlbL, contains PDZ domainSignal transduction mechanisms [T] 1.94
COG1384Lysyl-tRNA synthetase, class ITranslation, ribosomal structure and biogenesis [J] 0.97
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 0.97

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms95.15 %
UnclassifiedrootN/A4.85 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002558|JGI25385J37094_10000030All Organisms → cellular organisms → Archaea21710Open in IMG/M
3300002558|JGI25385J37094_10004744All Organisms → cellular organisms → Archaea4760Open in IMG/M
3300002558|JGI25385J37094_10018909All Organisms → cellular organisms → Archaea2462Open in IMG/M
3300002561|JGI25384J37096_10246217Not Available521Open in IMG/M
3300002562|JGI25382J37095_10094639All Organisms → cellular organisms → Archaea1069Open in IMG/M
3300002562|JGI25382J37095_10180134All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon652Open in IMG/M
3300002562|JGI25382J37095_10190822All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon624Open in IMG/M
3300002562|JGI25382J37095_10254185All Organisms → cellular organisms → Archaea530Open in IMG/M
3300005167|Ga0066672_10134294All Organisms → cellular organisms → Archaea1540Open in IMG/M
3300005167|Ga0066672_10493769All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon796Open in IMG/M
3300005167|Ga0066672_10546733All Organisms → cellular organisms → Archaea750Open in IMG/M
3300005174|Ga0066680_10029039All Organisms → cellular organisms → Archaea3109Open in IMG/M
3300005174|Ga0066680_10149776All Organisms → cellular organisms → Archaea1459Open in IMG/M
3300005174|Ga0066680_10265826All Organisms → cellular organisms → Archaea1092Open in IMG/M
3300005174|Ga0066680_10437531All Organisms → cellular organisms → Archaea827Open in IMG/M
3300005174|Ga0066680_10605233All Organisms → cellular organisms → Archaea685Open in IMG/M
3300005186|Ga0066676_10641037All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon721Open in IMG/M
3300005446|Ga0066686_10144735All Organisms → cellular organisms → Archaea1567Open in IMG/M
3300005446|Ga0066686_10762483All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon647Open in IMG/M
3300005447|Ga0066689_10001283All Organisms → cellular organisms → Archaea8694Open in IMG/M
3300005518|Ga0070699_100037893All Organisms → cellular organisms → Archaea4173Open in IMG/M
3300005536|Ga0070697_100136682All Organisms → cellular organisms → Archaea2058Open in IMG/M
3300005540|Ga0066697_10083561All Organisms → cellular organisms → Archaea1845Open in IMG/M
3300005552|Ga0066701_10523518All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon732Open in IMG/M
3300005554|Ga0066661_10072743All Organisms → cellular organisms → Archaea2010Open in IMG/M
3300005555|Ga0066692_10388448All Organisms → cellular organisms → Archaea885Open in IMG/M
3300005559|Ga0066700_10017329All Organisms → cellular organisms → Archaea3939Open in IMG/M
3300005559|Ga0066700_11014018Not Available546Open in IMG/M
3300005559|Ga0066700_11092967All Organisms → cellular organisms → Archaea522Open in IMG/M
3300005598|Ga0066706_10504608All Organisms → cellular organisms → Archaea963Open in IMG/M
3300006173|Ga0070716_101848482Not Available501Open in IMG/M
3300006755|Ga0079222_10883172All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon747Open in IMG/M
3300006797|Ga0066659_10176642All Organisms → cellular organisms → Archaea1543Open in IMG/M
3300007255|Ga0099791_10128928All Organisms → cellular organisms → Archaea1174Open in IMG/M
3300007255|Ga0099791_10183577All Organisms → cellular organisms → Archaea983Open in IMG/M
3300007258|Ga0099793_10642113Not Available534Open in IMG/M
3300007265|Ga0099794_10028566All Organisms → cellular organisms → Archaea2595Open in IMG/M
3300007265|Ga0099794_10144059All Organisms → cellular organisms → Archaea1208Open in IMG/M
3300007265|Ga0099794_10374454All Organisms → cellular organisms → Archaea742Open in IMG/M
3300009038|Ga0099829_10182321All Organisms → cellular organisms → Archaea1691Open in IMG/M
3300009038|Ga0099829_10249248All Organisms → cellular organisms → Archaea1448Open in IMG/M
3300009088|Ga0099830_10577695All Organisms → cellular organisms → Archaea921Open in IMG/M
3300009088|Ga0099830_10687500All Organisms → cellular organisms → Archaea842Open in IMG/M
3300009089|Ga0099828_10396250All Organisms → cellular organisms → Archaea1245Open in IMG/M
3300009089|Ga0099828_11036242All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon730Open in IMG/M
3300009089|Ga0099828_11722412All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon551Open in IMG/M
3300009137|Ga0066709_101357960All Organisms → cellular organisms → Archaea1037Open in IMG/M
3300010304|Ga0134088_10576468All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon558Open in IMG/M
3300012203|Ga0137399_10034541All Organisms → cellular organisms → Archaea3525Open in IMG/M
3300012205|Ga0137362_11536437All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon552Open in IMG/M
3300012206|Ga0137380_10048847All Organisms → cellular organisms → Archaea3878Open in IMG/M
3300012206|Ga0137380_10095254All Organisms → cellular organisms → Archaea2720Open in IMG/M
3300012206|Ga0137380_10396408All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1226Open in IMG/M
3300012206|Ga0137380_10663336All Organisms → cellular organisms → Archaea908Open in IMG/M
3300012206|Ga0137380_11195632Not Available645Open in IMG/M
3300012349|Ga0137387_10152029All Organisms → cellular organisms → Archaea1648Open in IMG/M
3300012349|Ga0137387_10951060All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon619Open in IMG/M
3300012350|Ga0137372_10067598All Organisms → cellular organisms → Archaea3090Open in IMG/M
3300012351|Ga0137386_10057595All Organisms → cellular organisms → Archaea2694Open in IMG/M
3300012359|Ga0137385_10144911All Organisms → cellular organisms → Archaea2091Open in IMG/M
3300012359|Ga0137385_10145966All Organisms → cellular organisms → Archaea2082Open in IMG/M
3300012359|Ga0137385_10146825All Organisms → cellular organisms → Archaea2075Open in IMG/M
3300012359|Ga0137385_10825142All Organisms → cellular organisms → Archaea769Open in IMG/M
3300012361|Ga0137360_10458986All Organisms → cellular organisms → Archaea → TACK group1080Open in IMG/M
3300012917|Ga0137395_10301022All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_2_20CM_2_52_211136Open in IMG/M
3300012918|Ga0137396_10046609All Organisms → cellular organisms → Archaea2956Open in IMG/M
3300012918|Ga0137396_10082104All Organisms → cellular organisms → Archaea2272Open in IMG/M
3300012918|Ga0137396_10232360All Organisms → cellular organisms → Archaea1359Open in IMG/M
3300012918|Ga0137396_10308597All Organisms → cellular organisms → Archaea1170Open in IMG/M
3300012918|Ga0137396_10341508All Organisms → cellular organisms → Archaea1108Open in IMG/M
3300012918|Ga0137396_10604404All Organisms → cellular organisms → Archaea811Open in IMG/M
3300017659|Ga0134083_10239576All Organisms → cellular organisms → Archaea757Open in IMG/M
3300018431|Ga0066655_10299970All Organisms → cellular organisms → Archaea1046Open in IMG/M
3300018431|Ga0066655_10761295All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon657Open in IMG/M
3300018431|Ga0066655_10932216All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon596Open in IMG/M
3300018468|Ga0066662_10063542All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon2430Open in IMG/M
3300021046|Ga0215015_11107582All Organisms → cellular organisms → Archaea1685Open in IMG/M
3300021088|Ga0210404_10040951All Organisms → cellular organisms → Archaea → TACK group2132Open in IMG/M
3300024330|Ga0137417_1366537All Organisms → cellular organisms → Archaea1209Open in IMG/M
3300026295|Ga0209234_1144970All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon848Open in IMG/M
3300026298|Ga0209236_1082896All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1483Open in IMG/M
3300026298|Ga0209236_1111506All Organisms → cellular organisms → Archaea1218Open in IMG/M
3300026309|Ga0209055_1056644All Organisms → cellular organisms → Archaea1672Open in IMG/M
3300026309|Ga0209055_1067850All Organisms → cellular organisms → Archaea1495Open in IMG/M
3300026317|Ga0209154_1006029All Organisms → cellular organisms → Archaea6215Open in IMG/M
3300026317|Ga0209154_1034477All Organisms → cellular organisms → Archaea2311Open in IMG/M
3300026317|Ga0209154_1071288All Organisms → cellular organisms → Archaea1510Open in IMG/M
3300026325|Ga0209152_10000342All Organisms → cellular organisms → Archaea22647Open in IMG/M
3300026328|Ga0209802_1004948All Organisms → cellular organisms → Archaea8643Open in IMG/M
3300026524|Ga0209690_1069031All Organisms → cellular organisms → Archaea1516Open in IMG/M
3300026529|Ga0209806_1002006All Organisms → cellular organisms → Archaea12893Open in IMG/M
3300026538|Ga0209056_10162818All Organisms → cellular organisms → Archaea1687Open in IMG/M
3300026547|Ga0209156_10487289All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon509Open in IMG/M
3300027671|Ga0209588_1056749All Organisms → cellular organisms → Archaea1266Open in IMG/M
3300027748|Ga0209689_1136564All Organisms → cellular organisms → Archaea1209Open in IMG/M
3300027846|Ga0209180_10332268All Organisms → cellular organisms → Archaea868Open in IMG/M
3300027846|Ga0209180_10389322All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon791Open in IMG/M
3300027862|Ga0209701_10500146All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon660Open in IMG/M
3300027875|Ga0209283_10206359All Organisms → cellular organisms → Archaea1305Open in IMG/M
3300027875|Ga0209283_10673982All Organisms → cellular organisms → Archaea648Open in IMG/M
3300027882|Ga0209590_10689598All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon654Open in IMG/M
3300028536|Ga0137415_10309569All Organisms → cellular organisms → Archaea1383Open in IMG/M
3300028536|Ga0137415_10775759All Organisms → cellular organisms → Archaea769Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil44.66%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil32.04%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil15.53%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.91%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.97%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.97%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.97%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cmEnvironmentalOpen in IMG/M
3300002561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cmEnvironmentalOpen in IMG/M
3300002562Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cmEnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005447Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138EnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300010304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015EnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300021046Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depthEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300024330Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300026295Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026298Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026309Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)EnvironmentalOpen in IMG/M
3300026317Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)EnvironmentalOpen in IMG/M
3300026325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)EnvironmentalOpen in IMG/M
3300026328Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)EnvironmentalOpen in IMG/M
3300026524Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)EnvironmentalOpen in IMG/M
3300026529Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300026547Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)EnvironmentalOpen in IMG/M
3300027671Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027748Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25385J37094_10000030143300002558Grasslands SoilMPDQTNAWKIRVRKGNYEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
JGI25385J37094_1000474423300002558Grasslands SoilMPDQTIAWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
JGI25385J37094_1001890923300002558Grasslands SoilMPDQTNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
JGI25384J37096_1024621713300002561Grasslands SoilMPEQPNTWRIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
JGI25382J37095_1009463913300002562Grasslands SoilMPDQMNTWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
JGI25382J37095_1018013423300002562Grasslands SoilMPEQMNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
JGI25382J37095_1019082213300002562Grasslands SoilMPDQVNAWKIRVKKGNSEVEVAGPSPEIVQKMFEELVKKYMTKLASSR*
JGI25382J37095_1025418513300002562Grasslands SoilCAMPDQMNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0066672_1013429443300005167SoilMPDQMNVWKIRVKKGNYEVEVAGPSPEIVQKMFEELVKKYMTKL
Ga0066672_1049376923300005167SoilMPEQTIAWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
Ga0066672_1054673313300005167SoilNVWKIRVKKGNYEVEVAGPSPEIVQKMFEELVKKYMTKLASSR*
Ga0066680_1002903953300005174SoilMNVWKIRVKKGNYEVEVAGPSPEIVQKMFEELVKKYMTKLASSR*
Ga0066680_1014977623300005174SoilMPDQTNSWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0066680_1026582633300005174SoilQMNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0066680_1043753113300005174SoilMPDQMNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0066680_1060523313300005174SoilMPEQTNAWKIRVKKGNYEVEVAGPSPEIVQKMFEELVKKYMTKLASSR*
Ga0066676_1064103723300005186SoilMPDQTIPWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
Ga0066686_1014473523300005446SoilMPEQTNVWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
Ga0066686_1076248313300005446SoilAMRDQTNSWKIRVKKGNYEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0066689_1000128323300005447SoilMNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0070699_10003789363300005518Corn, Switchgrass And Miscanthus RhizosphereMPDQMSTWKIRVKKGNYEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0070697_10013668213300005536Corn, Switchgrass And Miscanthus RhizosphereMRSMPDQMNTWKIRVKKGNYEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0066697_1008356133300005540SoilRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0066701_1052351813300005552SoilMPDQTIAWKIRVKKGNYEVEVAGPSHEIVQKMFEE
Ga0066661_1007274333300005554SoilMPDQMNVWKIRVKKGNYEVEVAGPSPEIVQKMFEELVKKYMTKLASSR*
Ga0066692_1038844823300005555SoilAWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
Ga0066700_1001732913300005559SoilMPDQTIAWKIRVKKGNYEVEVAGPSHEIVQKMFEEL
Ga0066700_1101401823300005559SoilMPDQMNVWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
Ga0066700_1109296723300005559SoilMPDQMNAWKIRVKKGNYEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0066706_1050460843300005598SoilMPEQTIAWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLA
Ga0070716_10184848223300006173Corn, Switchgrass And Miscanthus RhizosphereMPDQTNAWKIRVKKGNYEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0079222_1088317213300006755Agricultural SoilMPDQMNTWKIRVRKGNYEVEVAGPSPETVQKIFEELVKKYMTKLASSR*
Ga0066659_1017664213300006797SoilMPDQTNTWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0099791_1012892813300007255Vadose Zone SoilMPEQTNSWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0099791_1018357743300007255Vadose Zone SoilMPEQTNVWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTELASSR*
Ga0099793_1064211323300007258Vadose Zone SoilMPDQANAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0099794_1002856623300007265Vadose Zone SoilMPEQMNVWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0099794_1014405923300007265Vadose Zone SoilMPEQTIPWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
Ga0099794_1037445423300007265Vadose Zone SoilMNVWKIRVKKGNSEVEVAGPSPEVVQKMFEELVKKYMTKLASSR*
Ga0099829_1018232133300009038Vadose Zone SoilMNVWKIRVKKGNSEVEVAGPSPEVVQKMFEDLVKKYMTKLASSR*
Ga0099829_1024924823300009038Vadose Zone SoilMNTWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0099830_1057769513300009088Vadose Zone SoilMPDQNTAWKIRVKKWNSEVEVAGPSPEIVQKMFEELVKKYMTKLASSR*
Ga0099830_1068750013300009088Vadose Zone SoilKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
Ga0099828_1039625013300009089Vadose Zone SoilMPDQVNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTRLASSR*
Ga0099828_1103624223300009089Vadose Zone SoilMPEQTNVWKIRVKKGNSEVEVAGPSPEIVQKMFEELVKKYMTKLASSR*
Ga0099828_1172241223300009089Vadose Zone SoilKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
Ga0066709_10135796023300009137Grasslands SoilMPEQPNTWRIRVKKGNYEVEVAGPSHEIVQKMFDELVKKYMTKLASSR*
Ga0134088_1057646813300010304Grasslands SoilMRDQTNSWKIRVKKGNYEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137399_1003454133300012203Vadose Zone SoilMPEQTNAWKIRVKKGNSEVEVAGPSPEIVQRMFEDLVKKYMTKLASSR*
Ga0137362_1153643723300012205Vadose Zone SoilIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137380_1004884723300012206Vadose Zone SoilMPDQTNTWKIKVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137380_1009525413300012206Vadose Zone SoilNSATAAMPDQTNSWKIRVKKGNYEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137380_1039640833300012206Vadose Zone SoilMPDQTNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASS
Ga0137380_1066333623300012206Vadose Zone SoilKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137380_1119563213300012206Vadose Zone SoilMPDQTNSWKIRVKKGNYEVEVAGPSPEIVQKMFED
Ga0137387_1015202913300012349Vadose Zone SoilWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137387_1095106023300012349Vadose Zone SoilAMPDQTNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137372_1006759813300012350Vadose Zone SoilWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
Ga0137386_1005759523300012351Vadose Zone SoilMPDESNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137385_1014491113300012359Vadose Zone SoilMPDQTNTWKIRVKKGNSEVEVAGPSPEIVQKMFEALVKNYITKLASSR*
Ga0137385_1014596623300012359Vadose Zone SoilMPDQTNSWKIRVKKGNYEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137385_1014682513300012359Vadose Zone SoilMPEQTNTWKIKVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137385_1082514213300012359Vadose Zone SoilTWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137360_1045898623300012361Vadose Zone SoilMPDQTNPWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137395_1030102233300012917Vadose Zone SoilMPEQTNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137396_1004660923300012918Vadose Zone SoilMPEQTNVWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137396_1008210423300012918Vadose Zone SoilMPEQMNIWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
Ga0137396_1023236033300012918Vadose Zone SoilMPEQTNAWKIRVKKGNSEVEVAGPSPEIVQRMFEELVKKYMTKLASSR*
Ga0137396_1030859723300012918Vadose Zone SoilNVWKIRGKKGNSEVEVAGPSPQIVQKMFENLVKK*
Ga0137396_1034150823300012918Vadose Zone SoilMNVWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
Ga0137396_1060440423300012918Vadose Zone SoilCAMPEQTNVWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
Ga0134083_1023957623300017659Grasslands SoilELCNCAMPDQTIAWKITVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR
Ga0066655_1029997023300018431Grasslands SoilMPEQTNVWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR
Ga0066655_1076129523300018431Grasslands SoilMPEQTIAWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR
Ga0066655_1093221623300018431Grasslands SoilMPDQTIAWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR
Ga0066662_1006354223300018468Grasslands SoilMPDQMNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR
Ga0215015_1110758223300021046SoilMPDQTNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR
Ga0210404_1004095113300021088SoilMPDQTNAWKIRVRKGNYEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR
Ga0137417_136653713300024330Vadose Zone SoilMPEQTNVWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR
Ga0209234_114497013300026295Grasslands SoilMPEQPNTWRIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR
Ga0209236_108289643300026298Grasslands SoilMNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR
Ga0209236_111150643300026298Grasslands SoilMPDQTIAWKIRVKKGNYEVEVAGPSHEIVQKMFEDLVKKYMTKLASSR
Ga0209055_105664433300026309SoilMPDQTIPWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR
Ga0209055_106785013300026309SoilMNVWKIRVKKGNYEVEVAGPSPEIVQKMFEELVKKYMTKLASSR
Ga0209154_100602963300026317SoilMNVWKIRVKKGNYEVEVAGPSPEIVQKMFEELVKKYMT
Ga0209154_103447713300026317SoilMPDQMNVWKIRVKKGNYEVEVAGPSPEIVQKMFEELVKKYMTKLASSR
Ga0209154_107128843300026317SoilMPDQMNVWKIRVKKGNYEVEVAGPSPEIVQKMFEELVKKYMT
Ga0209152_10000342223300026325SoilMPDQMNVWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR
Ga0209802_100494883300026328SoilMPEQMNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR
Ga0209690_106903143300026524SoilMPDQVNAWKIRVKKGNSEVEVAGPSPEIVQKMFEELVKKYMTKLASSR
Ga0209806_100200663300026529SoilMPDQTNTWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR
Ga0209056_1016281843300026538SoilMPDQTIAWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLA
Ga0209156_1048728923300026547SoilVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR
Ga0209588_105674923300027671Vadose Zone SoilMPEQTIPWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR
Ga0209689_113656423300027748SoilMPDQTNSWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR
Ga0209180_1033226823300027846Vadose Zone SoilSRAMPDQPIAWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR
Ga0209180_1038932223300027846Vadose Zone SoilMPDQPIAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR
Ga0209701_1050014613300027862Vadose Zone SoilGSANGAMPDQTNSWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR
Ga0209283_1020635923300027875Vadose Zone SoilMNVWKIRVKKGNSEVEVAGPSPEVVQKMFEDLVKKYMTKLASSR
Ga0209283_1067398213300027875Vadose Zone SoilKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR
Ga0209590_1068959823300027882Vadose Zone SoilKIRVKKGNSEVEVAGPSPEIVQKMFEELVKKYMTKLASSR
Ga0137415_1030956913300028536Vadose Zone SoilMPEQTNAWKIRVKKGNYEVEVAGPSPEIVQKMFEELVKKYMTKLASSR
Ga0137415_1077575913300028536Vadose Zone SoilMPDQANAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.