NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F099726

Metagenome Family F099726

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099726
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 49 residues
Representative Sequence MKTKSPYAFGLALLLSFLIAIPADVWAAPQAAGQRAGEVSRVIPAVNI
Number of Associated Samples 82
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 99.02 %
% of genes near scaffold ends (potentially truncated) 98.06 %
% of genes from short scaffolds (< 2000 bps) 85.44 %
Associated GOLD sequencing projects 76
AlphaFold2 3D model prediction Yes
3D model pTM-score0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (87.379 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(31.068 % of family members)
Environment Ontology (ENVO) Unclassified
(33.010 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(52.427 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 34.21%    β-sheet: 0.00%    Coil/Unstructured: 65.79%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF07228SpoIIE 58.25
PF01361Tautomerase 3.88
PF13620CarboxypepD_reg 1.94
PF02265S1-P1_nuclease 0.97
PF03976PPK2 0.97
PF01272GreA_GreB 0.97
PF13456RVT_3 0.97
PF02621VitK2_biosynth 0.97
PF01933CofD 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG1942Phenylpyruvate tautomerase PptA, 4-oxalocrotonate tautomerase familySecondary metabolites biosynthesis, transport and catabolism [Q] 3.88
COG0391Archaeal 2-phospho-L-lactate transferase/Bacterial gluconeogenesis factor, CofD/UPF0052 familyCarbohydrate transport and metabolism [G] 0.97
COG0782Transcription elongation factor, GreA/GreB familyTranscription [K] 0.97
COG1427Chorismate dehydratase (menaquinone biosynthesis, futalosine pathway)Coenzyme transport and metabolism [H] 0.97
COG2326Polyphosphate kinase 2, PPK2 familyEnergy production and conversion [C] 0.97

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms87.38 %
UnclassifiedrootN/A12.62 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002914|JGI25617J43924_10208075All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium651Open in IMG/M
3300003368|JGI26340J50214_10106091Not Available718Open in IMG/M
3300003505|JGIcombinedJ51221_10012910All Organisms → cellular organisms → Bacteria2774Open in IMG/M
3300005177|Ga0066690_10061269All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2327Open in IMG/M
3300005332|Ga0066388_105744128All Organisms → cellular organisms → Bacteria628Open in IMG/M
3300005447|Ga0066689_10226032All Organisms → cellular organisms → Bacteria1144Open in IMG/M
3300005569|Ga0066705_10060704All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2152Open in IMG/M
3300005576|Ga0066708_10336951All Organisms → cellular organisms → Bacteria968Open in IMG/M
3300005602|Ga0070762_11247330All Organisms → cellular organisms → Bacteria515Open in IMG/M
3300006050|Ga0075028_100341960All Organisms → cellular organisms → Bacteria843Open in IMG/M
3300006173|Ga0070716_101170678All Organisms → cellular organisms → Bacteria616Open in IMG/M
3300006176|Ga0070765_101150705All Organisms → cellular organisms → Bacteria733Open in IMG/M
3300006893|Ga0073928_10909930All Organisms → cellular organisms → Bacteria603Open in IMG/M
3300009012|Ga0066710_100044276All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis5416Open in IMG/M
3300009038|Ga0099829_10209946All Organisms → cellular organisms → Bacteria1578Open in IMG/M
3300009088|Ga0099830_11560841All Organisms → cellular organisms → Bacteria550Open in IMG/M
3300009089|Ga0099828_10225891All Organisms → cellular organisms → Bacteria1674Open in IMG/M
3300009089|Ga0099828_11560704All Organisms → cellular organisms → Bacteria → Acidobacteria582Open in IMG/M
3300010336|Ga0134071_10263799All Organisms → cellular organisms → Bacteria860Open in IMG/M
3300010358|Ga0126370_12442681Not Available520Open in IMG/M
3300010361|Ga0126378_12150422All Organisms → cellular organisms → Bacteria → Acidobacteria636Open in IMG/M
3300010398|Ga0126383_11501768All Organisms → cellular organisms → Bacteria763Open in IMG/M
3300011269|Ga0137392_10344725All Organisms → cellular organisms → Bacteria1234Open in IMG/M
3300011271|Ga0137393_10179028All Organisms → cellular organisms → Bacteria1782Open in IMG/M
3300011271|Ga0137393_10564175All Organisms → cellular organisms → Bacteria976Open in IMG/M
3300012198|Ga0137364_10602444Not Available828Open in IMG/M
3300012205|Ga0137362_10631942All Organisms → cellular organisms → Bacteria922Open in IMG/M
3300012207|Ga0137381_11426514All Organisms → cellular organisms → Bacteria584Open in IMG/M
3300012208|Ga0137376_10256530All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1517Open in IMG/M
3300012208|Ga0137376_10544341All Organisms → cellular organisms → Bacteria1006Open in IMG/M
3300012208|Ga0137376_10869393Not Available775Open in IMG/M
3300012349|Ga0137387_10572168All Organisms → cellular organisms → Bacteria819Open in IMG/M
3300012582|Ga0137358_10600295All Organisms → cellular organisms → Bacteria739Open in IMG/M
3300012683|Ga0137398_10273538All Organisms → cellular organisms → Bacteria1130Open in IMG/M
3300012917|Ga0137395_10247092All Organisms → cellular organisms → Bacteria1253Open in IMG/M
3300012917|Ga0137395_11013220All Organisms → cellular organisms → Bacteria594Open in IMG/M
3300012918|Ga0137396_11084101All Organisms → cellular organisms → Bacteria574Open in IMG/M
3300012918|Ga0137396_11320004All Organisms → cellular organisms → Bacteria500Open in IMG/M
3300012922|Ga0137394_10935069All Organisms → cellular organisms → Bacteria722Open in IMG/M
3300012923|Ga0137359_10628187All Organisms → cellular organisms → Bacteria940Open in IMG/M
3300012925|Ga0137419_10542870All Organisms → cellular organisms → Bacteria928Open in IMG/M
3300012927|Ga0137416_11426794All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium627Open in IMG/M
3300012929|Ga0137404_10121645All Organisms → cellular organisms → Bacteria2135Open in IMG/M
3300012930|Ga0137407_11441043All Organisms → cellular organisms → Bacteria655Open in IMG/M
3300014166|Ga0134079_10607443Not Available545Open in IMG/M
3300016445|Ga0182038_10932710All Organisms → cellular organisms → Bacteria766Open in IMG/M
3300017936|Ga0187821_10046045All Organisms → cellular organisms → Bacteria1558Open in IMG/M
3300017975|Ga0187782_10406514All Organisms → cellular organisms → Bacteria1035Open in IMG/M
3300018090|Ga0187770_11300319All Organisms → cellular organisms → Bacteria589Open in IMG/M
3300018431|Ga0066655_10880937Not Available611Open in IMG/M
3300018482|Ga0066669_10365640All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1206Open in IMG/M
3300019789|Ga0137408_1148615All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2531Open in IMG/M
3300020580|Ga0210403_10261574All Organisms → cellular organisms → Bacteria1419Open in IMG/M
3300020580|Ga0210403_11444185All Organisms → cellular organisms → Bacteria519Open in IMG/M
3300020580|Ga0210403_11525046Not Available502Open in IMG/M
3300020581|Ga0210399_10294336All Organisms → cellular organisms → Bacteria1355Open in IMG/M
3300020581|Ga0210399_10938336All Organisms → cellular organisms → Bacteria700Open in IMG/M
3300020583|Ga0210401_10902287All Organisms → cellular organisms → Bacteria743Open in IMG/M
3300021086|Ga0179596_10071598All Organisms → cellular organisms → Bacteria1505Open in IMG/M
3300021086|Ga0179596_10582187Not Available568Open in IMG/M
3300021086|Ga0179596_10693482All Organisms → cellular organisms → Bacteria515Open in IMG/M
3300021403|Ga0210397_10052950All Organisms → cellular organisms → Bacteria2609Open in IMG/M
3300021405|Ga0210387_10134561All Organisms → cellular organisms → Bacteria2101Open in IMG/M
3300021405|Ga0210387_10136412All Organisms → cellular organisms → Bacteria2087Open in IMG/M
3300021420|Ga0210394_10771701All Organisms → cellular organisms → Bacteria841Open in IMG/M
3300021420|Ga0210394_11251091All Organisms → cellular organisms → Bacteria636Open in IMG/M
3300021477|Ga0210398_11422483All Organisms → cellular organisms → Bacteria → Acidobacteria542Open in IMG/M
3300021477|Ga0210398_11612433Not Available503Open in IMG/M
3300021478|Ga0210402_10281043All Organisms → cellular organisms → Bacteria1539Open in IMG/M
3300021478|Ga0210402_11619336All Organisms → cellular organisms → Bacteria574Open in IMG/M
3300021560|Ga0126371_12354897Not Available644Open in IMG/M
3300026305|Ga0209688_1066731All Organisms → cellular organisms → Bacteria → Acidobacteria649Open in IMG/M
3300026335|Ga0209804_1324172Not Available519Open in IMG/M
3300026538|Ga0209056_10704719All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300026551|Ga0209648_10360779All Organisms → cellular organisms → Bacteria991Open in IMG/M
3300027173|Ga0208097_1016310All Organisms → cellular organisms → Bacteria826Open in IMG/M
3300027645|Ga0209117_1195479Not Available512Open in IMG/M
3300027660|Ga0209736_1159647All Organisms → cellular organisms → Bacteria597Open in IMG/M
3300027674|Ga0209118_1016417All Organisms → cellular organisms → Bacteria2419Open in IMG/M
3300027674|Ga0209118_1025007All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1869Open in IMG/M
3300027795|Ga0209139_10207407All Organisms → cellular organisms → Bacteria693Open in IMG/M
3300027853|Ga0209274_10023177All Organisms → cellular organisms → Bacteria2840Open in IMG/M
3300027853|Ga0209274_10128964All Organisms → cellular organisms → Bacteria1264Open in IMG/M
3300027875|Ga0209283_10255268All Organisms → cellular organisms → Bacteria1162Open in IMG/M
3300027911|Ga0209698_10066156All Organisms → cellular organisms → Bacteria3107Open in IMG/M
3300028023|Ga0265357_1026922All Organisms → cellular organisms → Bacteria647Open in IMG/M
3300028037|Ga0265349_1002041All Organisms → cellular organisms → Bacteria1817Open in IMG/M
3300028536|Ga0137415_10207561All Organisms → cellular organisms → Bacteria1776Open in IMG/M
3300028906|Ga0308309_10358440All Organisms → cellular organisms → Bacteria1245Open in IMG/M
3300031231|Ga0170824_124620178All Organisms → cellular organisms → Bacteria737Open in IMG/M
3300031708|Ga0310686_101200545All Organisms → cellular organisms → Bacteria1013Open in IMG/M
3300031754|Ga0307475_10304332All Organisms → cellular organisms → Bacteria1280Open in IMG/M
3300031823|Ga0307478_11686654All Organisms → cellular organisms → Bacteria522Open in IMG/M
3300031896|Ga0318551_10286739All Organisms → cellular organisms → Bacteria925Open in IMG/M
3300031962|Ga0307479_10000202All Organisms → cellular organisms → Bacteria56344Open in IMG/M
3300031962|Ga0307479_10197482All Organisms → cellular organisms → Bacteria1981Open in IMG/M
3300032044|Ga0318558_10435613All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300032059|Ga0318533_10469350All Organisms → cellular organisms → Bacteria922Open in IMG/M
3300032205|Ga0307472_100024796All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3363Open in IMG/M
3300032205|Ga0307472_100228987All Organisms → cellular organisms → Bacteria → Acidobacteria1439Open in IMG/M
3300032205|Ga0307472_100984682All Organisms → cellular organisms → Bacteria788Open in IMG/M
3300032828|Ga0335080_11077901All Organisms → cellular organisms → Bacteria814Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil31.07%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil17.48%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil6.80%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil6.80%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil5.83%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil4.85%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil4.85%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil4.85%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.94%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.94%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.94%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.94%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.97%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.97%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.97%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.97%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.97%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.97%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.97%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.97%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002914Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cmEnvironmentalOpen in IMG/M
3300003368Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2EnvironmentalOpen in IMG/M
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005447Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005576Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017936Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1EnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018090Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300019789Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300026305Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)EnvironmentalOpen in IMG/M
3300026335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300027173Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036 (SPAdes)EnvironmentalOpen in IMG/M
3300027645Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027660Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027674Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027795Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027853Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300028023Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5Host-AssociatedOpen in IMG/M
3300028037Soil microbial communities from Maridalen valley, Oslo, Norway - NSE1EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031896Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032044Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25617J43924_1020807533300002914Grasslands SoilMKTKSPYAFGLALLLSILIAIPADVWAAPQAAGQRAGEVSRVIPAVSIARSGKTIT
JGI26340J50214_1010609123300003368Bog Forest SoilMKTRQSCQLALALLLACSLAIPTEIAGAPQGAGQRAGEVSRVIPAVSIGRGGKTITAAA
JGIcombinedJ51221_1001291013300003505Forest SoilMKTKSPCALGLAFLLSLIITIPADISAEPQTGGQRAGEVARVIPAVSIARGPKTLNASA
Ga0066690_1006126953300005177SoilMKTKSPQAFGLALLLSSLISISADPGAAPQPAGVRAGEVSRVIP
Ga0066388_10574412823300005332Tropical Forest SoilMKTKSPYVCGLATLLSCSLALPAVLWAQPQGGSQRAGEVSRVIPAVTIGRGAQKITAS
Ga0066689_1022603223300005447SoilMKTKSPYALGLAVLLSLLIAIPADTWASPQTSGQRAGEVSRLIPAVSIA
Ga0066705_1006070433300005569SoilMTKKSPCALGVAVLLSWLIAIPGNSWAAPQAAGQHAGEVSRFIPAAN
Ga0066708_1033695123300005576SoilMKTKSPYAFGLALLLSFLIAIPADVWAAPQAAGQRAGEVSRVIPAVNI
Ga0070762_1124733013300005602SoilMNTKSPYALALAVLSSFLIAIPADISAAPQAAGQRAGEVSRVIPAVSIARG
Ga0075028_10034196013300006050WatershedsMMKKSPYAFELAFLLSLLISIPTDVWAAPQAAGQRAGEVSRVIPA
Ga0070716_10117067813300006173Corn, Switchgrass And Miscanthus RhizosphereMKTKSPYAFGPALLLSILIAIPADVWAAPQTAGQHAGEVSRVIPAVSIARSGKT
Ga0070765_10115070523300006176SoilMKTKSPGALGLAFLLSMIITIPADISAEPQTGGQKAGEVARVIPAVSIARGSKTLNASAKTVV
Ga0073928_1090993013300006893Iron-Sulfur Acid SpringMKTKSPCALALAFSLSLMIAVPADISAEPQGAGQKAGEIARLIPAVSIAR
Ga0066710_10004427693300009012Grasslands SoilMKTKSPYAFGLALLLSLLIAIPADVWAAPQAAGQRAGEVSRVIPAVSIARSGKTITASAK
Ga0099829_1020994613300009038Vadose Zone SoilMKTKSPYAFGLALLLSFFIAIPADVWAAPQAAGQRAGEVSRVIP
Ga0099830_1156084113300009088Vadose Zone SoilMTTKSPCAFGLALLVSLLISIPADVWAAPQAAGQHAGEVSRVI
Ga0099828_1022589143300009089Vadose Zone SoilMKTKSPYAFGLTLLLSILIAIPADVWAAPQAAGQRAGEVSRVIPAVSIARSGKTI
Ga0099828_1156070413300009089Vadose Zone SoilMKTKSPHALGLALLLSFLISIPADVWAAPQAAGPRAGEVSRVIPAVNIARGGKTITA*
Ga0134071_1026379933300010336Grasslands SoilMKTKSPYAFGLALLLSLLIAIPADVWAAPQAAGQRAGEVSRVIPAVSIARSGK
Ga0126370_1244268113300010358Tropical Forest SoilMNKKSPCAAGLVMLLSWLMIVPADALAAPQAGGQRAGEVSRVIPAVSIARTGKTIA
Ga0126378_1215042223300010361Tropical Forest SoilMTRKSPVVLGVAVLLSWSIAIPSNTWADPQAAGQRAGEVARVIPAVNIARGAKT
Ga0126383_1150176813300010398Tropical Forest SoilMLLSWSIALPPNGWADPQAAGQRAGEVSRVIPAVNIARSGKTISATAKTVV
Ga0137392_1034472533300011269Vadose Zone SoilMKTKSPYAFGLALLLSFFIAIPADVWAAPQAAGQRA
Ga0137393_1017902843300011271Vadose Zone SoilMKTKSPHAFGLALLLSFLIAIQGEVWAAPQAAGQRAGEVSR
Ga0137393_1056417513300011271Vadose Zone SoilMKTKSPYAFVLALPLSLLISIPADVWAAPQAAGQRAGEVSRVIPAVSIGRSGKTITASAK
Ga0137364_1060244413300012198Vadose Zone SoilMKMKSRFAFGLALLLSLLMAIPMEVWAAPQSAVQRAGEVSRVIPAVNIARSGKTITASA
Ga0137362_1063194213300012205Vadose Zone SoilMTTKSPCAFGLALLVSLLISIPADVWAAPQAAGQRAGE
Ga0137381_1142651413300012207Vadose Zone SoilMKKKSPCALGLAVLLSWLITFPIESWGEPQAAGQRAGEVSRMIPAVNIARSGKTITAA
Ga0137376_1025653033300012208Vadose Zone SoilMKKMKPRFAFGLALLLSLLVAIPTEVWAAPQSAVQRAGEVSRVIPAVN
Ga0137376_1054434113300012208Vadose Zone SoilMKTESPYAFGLALLLSFFIAIPADVWAAPQAAGQRAGEVSRVIPAVNIA
Ga0137376_1086939323300012208Vadose Zone SoilMKMKSRFAFGLALLLSLLVAIPTEVWAAPQSAVQRAGEVSRVIPAVN
Ga0137387_1057216823300012349Vadose Zone SoilMKTKSPYAFGLALLLSFFIAIPADVWAAPQAAGQRAGE
Ga0137358_1060029513300012582Vadose Zone SoilMKTKSPSTLGLAVLLSFLLAIPADTWAAPQTSGQRAGEVSRLIPAVSIARG
Ga0137398_1027353833300012683Vadose Zone SoilMKTKSPYAFGLSLSLSLLIAIPADVWAAPQAAGQRAGEVSRVIPAVSIARSGKTITA
Ga0137395_1024709233300012917Vadose Zone SoilMKTKSPYAFGLALLLSILIAIPADVWAAPQAAGQRA
Ga0137395_1101322023300012917Vadose Zone SoilMKTKSPYALGLAVLLSLLIAIPADTWASPQTSGQRAGEVSRLIP
Ga0137396_1108410113300012918Vadose Zone SoilMKTKSPRALGLSVLLSLLLAISADTWAAPQGAGQRAGEVSRLIPAVNIARGPKSITAS
Ga0137396_1132000413300012918Vadose Zone SoilMKTKSPYAFGLALLLSFFMAIPADVWAAPQAAGQRA
Ga0137394_1093506913300012922Vadose Zone SoilMKTKSPYTLGLAVLFSFLLTIPADTCAAPQGAGQRAGEVSRLIPAVSIARGPKSI
Ga0137359_1062818723300012923Vadose Zone SoilMKTKSPCALGLAVSLSLLLAIPADTLAAPQEAGQRAGEVS
Ga0137419_1054287013300012925Vadose Zone SoilMKTKSPCALGLAVSLSLLLAIPADALPAPQGAGQRAGEVARL
Ga0137416_1142679423300012927Vadose Zone SoilMKTKSPYAFGLALSLSLLISIPADVWAAPQAGGQRAGEVSRVIPA
Ga0137404_1012164513300012929Vadose Zone SoilMKTQSPYALGLAVLLSFLLAIPADTLAAPQGAGQRAGEVSRLIPAV
Ga0137407_1144104323300012930Vadose Zone SoilMKTKSPCALGLAVSLSLLLAIPADIWAAPQGAGQRAGEVSRLIPAV
Ga0134079_1060744313300014166Grasslands SoilMKMKSRFAFGLALLLSLLMAIPMEVWAAPQSAVQRAG
Ga0182038_1093271013300016445SoilMKTKSPCVCLLAALLSSLLAIPADILAEPQGAGQRAGEVSRVIPAVSIARGA
Ga0187821_1004604543300017936Freshwater SedimentMMRKSPAALGLALLLSLMIAIPADISAAPQATGQRAGEISRLIPAVS
Ga0187782_1040651413300017975Tropical PeatlandMMKKKSPYVFALAMFMTFLLVNPPENWADPQAAGQRAGEVSRVIPAVNIARSGKTINAS
Ga0187770_1130031923300018090Tropical PeatlandMMKKKPLYILALALFLSFLLVSPPDNWAMPQAAGQRAGEVSRIIPAVNIARSGKT
Ga0066655_1088093713300018431Grasslands SoilMKMKSRFAFGLALLLSLLVAIPTDGADGPQSAAQAA
Ga0066669_1036564013300018482Grasslands SoilMKMKSRFAFGLALLLSLLVAIPTEVWAAPQSAVQRAGEV
Ga0137408_114861513300019789Vadose Zone SoilMKTKSPYALGLAVLLSLLIAIPADTWASPQTSGQRAGEKSLVLYPR
Ga0210403_1026157413300020580SoilMKTKSPFALGLAVLLSFLITIPADTWAAPQAAGQRA
Ga0210403_1144418523300020580SoilMKTKSPFALGLAVLLSFLITIPADTWAAPQAAGQRAGEVSRVIPAVSIA
Ga0210403_1152504613300020580SoilVNTKSPFAVGLALWLSLSIGAPLDISAAPQADGQRAGLVARLIPAVSIARGSKTLDA
Ga0210399_1029433633300020581SoilMHTKSPLGLVLAVLLSFLLTIPADVWAAPQTGGQRAV
Ga0210399_1093833613300020581SoilMKTKSPFALGLAVLLSFLITIPADTWAAPQAAGQRAGEVSRVIP
Ga0210401_1090228723300020583SoilMKTKSPYALALAVLSSFLMAIPADIAAAPQTAAQRAGEVSRVIPAVSIARGPKTM
Ga0179596_1007159813300021086Vadose Zone SoilMKTKSPYAFGLTLLLSFLISIPGDICAAPQAAGARAGEVSRVIPAVSIA
Ga0179596_1058218723300021086Vadose Zone SoilMKMNSRLAFGLALLLSLLVAIPTEVWAAPQSAVQRAGEV
Ga0179596_1069348213300021086Vadose Zone SoilMKTKSPYAFGLALLISFLMSIPVDVWAAPQAAGQRAGEVSRVIPAVTIA
Ga0210397_1005295063300021403SoilMKTKSPFALGLAVLLSFLITIPADTWAAPQAAGQRAGEV
Ga0210387_1013456113300021405SoilMKTKSPAALLLAVILSWLMAIPSDTWAQTAGQHAGVVSRVIPAVSIARGAKTISANEKTA
Ga0210387_1013641243300021405SoilMKTKSPCALGLAFLLSLIITIPLDITAEPQAGGQKAGEVARVIPAVSIARGP
Ga0210394_1077170123300021420SoilMKTKSPYALGLALLLSFLISIPADVWAAPQSAAQRAGEVSRVIPAVNI
Ga0210394_1125109113300021420SoilMKTKSPYALPLAFSLSLLIAVPADISAEPQGAGQRAGEIARLIPAVSIARG
Ga0210398_1142248323300021477SoilMKTKSPIVLALACLLSLTATIPADIFAEPQGGGQQAGVVARLIPAVNIARGSKT
Ga0210398_1161243313300021477SoilMKTKSPFALCLAFLLSLIITTPADISAEPQAGGQKAGEVARMIPAVSIARGSKTLNASVKSV
Ga0210402_1028104313300021478SoilMKTKSPFALGLAVLLSFLITIPADTWAAPQAAGQRAGEVS
Ga0210402_1161933623300021478SoilMKTKSPAALLLAVILSWLMAIPSDTWAQTAGQHAGVVSRVIPA
Ga0126371_1075632923300021560Tropical Forest SoilMAKKSPCVLGVAVFLSCLVAIPSNTWAEPQAAGQRAGEVSRLIPAVNIA
Ga0126371_1235489713300021560Tropical Forest SoilMKTKSPYVCSLAVLTSCCLALSTQTWAEPQGGAQRAGEVSRVIP
Ga0209688_106673123300026305SoilMTKKSPCALGVAVLLSCLITIPSETWAAPQAAGQRAGEVSRIIPAVNIA
Ga0209804_132417223300026335SoilMKTESPYAFGLALLLSFFIAIPADVWAAPQAAGQRA
Ga0209056_1070471923300026538SoilMKTKSPYAFGLALLLSSLIAIPADIWAAPQPAGQRAGEVSRV
Ga0209648_1036077933300026551Grasslands SoilMKTKSPHALGLALLLSFLISIPADVWAAPQAAGPRAGEVSRVIPAVNIARGGE
Ga0208097_101631013300027173Forest SoilMMKTKSPYALGVTIALSALISIPADSWAAPPPAVQRAGEVA
Ga0209117_119547923300027645Forest SoilMKTKSPCALILASMLSLSIAIPMGICAAPQAGAQQRAGEVSRVIPAANIARGTKTITASP
Ga0209736_115964713300027660Forest SoilMKKKSPYAFGLALWLSFLISIPGEVWAAPQAAGQRAGEVSRVIPAVNIARS
Ga0209118_101641743300027674Forest SoilMKTKSPYAFGLALSLSFLISIPGEVWAAPQAAGQRAGEVSRVIPAV
Ga0209118_102500713300027674Forest SoilMKKKSPYAFGLALWLSFLISIPGEVWAAPQAAGQRAGEVSRVIPAV
Ga0209139_1020740713300027795Bog Forest SoilMKMKSPFALGLALLLSLMITIPADISAEPQTAGQKAGEVARVIPAVSIARGSKTINASAKTLV
Ga0209274_1002317713300027853SoilVNTKSPFAVGLALWLSLSIGAPLDISAAPQADGQRAGLVARLIPAVSIARGSKTLDAS
Ga0209274_1012896433300027853SoilMKIKSRCAFGLAVLLSLTIAIPADICAEPQGGGQRAGAVSRLIPAVSI
Ga0209283_1025526813300027875Vadose Zone SoilMKTKTPHAFGLALLLSLLITIPTDVWAAPQAAGQRAGEVSRVIPAVSIARSGKTITAS
Ga0209698_1006615643300027911WatershedsMKTKSPSAFGLALLLSLLIAIPADTWAAPQAAGQRAGEVSRVIPAVSIAR
Ga0265357_102692223300028023RhizosphereMKTKSPFAFGLAFLLSLTITVPADISAEPQTGGQKAGEVARLIPAVSIARGSKTINASTK
Ga0265349_100204133300028037SoilMKTKSPFAFGLAFLLSLTITVPADISAEPQTGGQKAGEVARLIPAVSIARG
Ga0137415_1020756133300028536Vadose Zone SoilMKTKPPCALVLAVLLSFLLAIPADTLAAPQGAGQRAGEVSR
Ga0308309_1035844013300028906SoilMKTKSPLALGLAFLLSLIITIPLDITAEPQAGGQKAGEVARVIPAVSIARGP
Ga0170824_12462017813300031231Forest SoilMKTKSPCALALAFSLSLMIAVPADISAEPQGAGQKAGEIARLIPAVSIARGSKT
Ga0310686_10120054523300031708SoilMRTKSPFALGLAFLLSLIITVPADLSAEPQTGGQKAGEVARVIPAVSIARGSK
Ga0307475_1030433213300031754Hardwood Forest SoilMKMKSPSAFGLALSLSFISAIPPDIWAAPQAAGQRAGEVSRVIPAVSIARSGKTITA
Ga0307478_1168665413300031823Hardwood Forest SoilMKTKSPYAFGLALSLSLLISIPAEVWAGPQAAGQRAG
Ga0318551_1028673933300031896SoilMTKSPYVLALACLLSHAIAVPVDTWAAPPPADQRAGEVSRVIP
Ga0307479_10000202553300031962Hardwood Forest SoilMKTKSPHALALALLLSLLIAIPADLWAAPQAAGQRAGEVSRVIPAVSIARSGKTI
Ga0307479_1019748243300031962Hardwood Forest SoilMKTKSPWALAFLLSLTIAIPADISAEPQGGGQRAGEVARLIPAVSIARGSK
Ga0318558_1043561323300032044SoilMKTKSPCVCLLAALLSSLLAIPADILAEPQGAGQRAGEVSRVIPA
Ga0318533_1046935023300032059SoilMKTKTPCVCLLAALLSSLLAIPADILAEPQGAGQRAGEVSRVIPA
Ga0307472_10002479613300032205Hardwood Forest SoilMKTKSPYALGLAVLLSFLLVIPTDTWAAPQTAGQRA
Ga0307472_10022898733300032205Hardwood Forest SoilMKTKSPYVSGLAALVSCCLALPASVWAEPQGGAQRAGEVSRVIPAVSIARGS
Ga0307472_10098468223300032205Hardwood Forest SoilMKTKSPCAFGLALSLSLLISIPVDVCAAPQAAGQRAGEVSRVIPAVSIARSGKT
Ga0335080_1107790113300032828SoilMKTKSPYVSGLAAFLSCCIALPASAWAEPQGGNQRAGEVSRVIPAVSIARGSQ

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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