Metagenome / Metatranscriptome Family F099732

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099732
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	74 residues
Representative Sequence	DLVPSFAILSEERHEFGDAVEASVHQVVVEVPQEHAGPEPDVLAEQIVLAANGWALECIASRHGAGEL
Number of Associated Samples	93
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.94 %
% of genes near scaffold ends (potentially truncated)	98.06 %
% of genes from short scaffolds (< 2000 bps)	98.06 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.087 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (11.650 % of family members)
Environment Ontology (ENVO)	Unclassified (23.301 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (42.718 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 29.17% β-sheet: 25.00% Coil/Unstructured: 45.83%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF04402	SIMPL	80.58
PF03551	PadR	7.77
PF01061	ABC2_membrane	1.94
PF01844	HNH	1.94
PF00202	Aminotran_3	0.97
PF08281	Sigma70_r4_2	0.97
PF14279	HNH_5	0.97
PF02129	Peptidase_S15	0.97
PF13649	Methyltransf_25	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG2859	Outer membrane channel-forming protein BP26/OMP28, SIMPL family	Cell wall/membrane/envelope biogenesis [M]	80.58
COG2968	Uncharacterized conserved protein YggE, contains kinase-interacting SIMPL domain	Function unknown [S]	80.58
COG3471	Predicted secreted (periplasmic) protein	Function unknown [S]	80.58
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	7.77
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	7.77
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	7.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.09 %
Unclassified	root	N/A	2.91 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.09 %
Unclassified	root	N/A	2.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.09 %
Unclassified	root	N/A	2.91 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	87.38 %
Unclassified	root	N/A	2.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	87.38 %
Unclassified	root	N/A	2.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	82.52 %
Unclassified	root	N/A	2.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	82.52 %
Unclassified	root	N/A	2.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	82.52 %
Unclassified	root	N/A	2.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559006\|FI_contig07582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1154	Open in IMG/M
2170459010\|GIO7OMY01AUXG4	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	508	Open in IMG/M
2189573002\|GZIGXIF02J52R9	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	502	Open in IMG/M
3300001686\|C688J18823_10602403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	701	Open in IMG/M
3300002568\|C688J35102_118599919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	576	Open in IMG/M
3300004157\|Ga0062590_101953592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	607	Open in IMG/M
3300004479\|Ga0062595_102419601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	521	Open in IMG/M
3300005093\|Ga0062594_102887837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	535	Open in IMG/M
3300005176\|Ga0066679_10168145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1383	Open in IMG/M
3300005176\|Ga0066679_10386125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	917	Open in IMG/M
3300005332\|Ga0066388_102916062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	874	Open in IMG/M
3300005337\|Ga0070682_101316470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	614	Open in IMG/M
3300005343\|Ga0070687_100731261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	694	Open in IMG/M
3300005363\|Ga0008090_14243166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	600	Open in IMG/M
3300005435\|Ga0070714_102286358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	526	Open in IMG/M
3300005437\|Ga0070710_10905607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	637	Open in IMG/M
3300005445\|Ga0070708_101762860	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300005456\|Ga0070678_101017701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	762	Open in IMG/M
3300005467\|Ga0070706_101011993	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	766	Open in IMG/M
3300005468\|Ga0070707_101148307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	743	Open in IMG/M
3300005529\|Ga0070741_11316694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	604	Open in IMG/M
3300005535\|Ga0070684_102309762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	507	Open in IMG/M
3300005538\|Ga0070731_10292117	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300005538\|Ga0070731_11162046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	510	Open in IMG/M
3300005544\|Ga0070686_101352908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	596	Open in IMG/M
3300005545\|Ga0070695_101652733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	535	Open in IMG/M
3300005546\|Ga0070696_100529849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	941	Open in IMG/M
3300005554\|Ga0066661_10474138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	761	Open in IMG/M
3300005560\|Ga0066670_10282722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1008	Open in IMG/M
3300005563\|Ga0068855_101945366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	595	Open in IMG/M
3300005576\|Ga0066708_10754488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	613	Open in IMG/M
3300005614\|Ga0068856_102585677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	514	Open in IMG/M
3300005764\|Ga0066903_100759057	All Organisms → cellular organisms → Bacteria	1724	Open in IMG/M
3300005891\|Ga0075283_1050391	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	716	Open in IMG/M
3300006028\|Ga0070717_11955125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	529	Open in IMG/M
3300006046\|Ga0066652_100291760	All Organisms → cellular organisms → Bacteria	1445	Open in IMG/M
3300006046\|Ga0066652_101428512	Not Available	646	Open in IMG/M
3300006173\|Ga0070716_101021289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	655	Open in IMG/M
3300006173\|Ga0070716_101654940	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300006794\|Ga0066658_10078429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1501	Open in IMG/M
3300006796\|Ga0066665_11526487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	522	Open in IMG/M
3300006904\|Ga0075424_101756103	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300006904\|Ga0075424_102392225	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300009093\|Ga0105240_11813716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	636	Open in IMG/M
3300009093\|Ga0105240_12762083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	505	Open in IMG/M
3300009545\|Ga0105237_11468023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	688	Open in IMG/M
3300010043\|Ga0126380_10517816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	920	Open in IMG/M
3300010333\|Ga0134080_10391824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	641	Open in IMG/M
3300010337\|Ga0134062_10412309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	663	Open in IMG/M
3300010362\|Ga0126377_11477529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	753	Open in IMG/M
3300010376\|Ga0126381_104471826	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	540	Open in IMG/M
3300010398\|Ga0126383_12691981	Not Available	580	Open in IMG/M
3300012008\|Ga0120174_1037084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1419	Open in IMG/M
3300012198\|Ga0137364_10419943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1002	Open in IMG/M
3300012198\|Ga0137364_10563344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	858	Open in IMG/M
3300012349\|Ga0137387_10703313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	731	Open in IMG/M
3300012355\|Ga0137369_10672435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	714	Open in IMG/M
3300012356\|Ga0137371_10901393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	672	Open in IMG/M
3300012923\|Ga0137359_11270104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	624	Open in IMG/M
3300012951\|Ga0164300_10177161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1024	Open in IMG/M
3300012957\|Ga0164303_10132817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1290	Open in IMG/M
3300012977\|Ga0134087_10711807	Not Available	534	Open in IMG/M
3300013294\|Ga0120150_1107324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	525	Open in IMG/M
3300013501\|Ga0120154_1053027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	964	Open in IMG/M
3300014166\|Ga0134079_10382871	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	649	Open in IMG/M
3300015356\|Ga0134073_10180735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	688	Open in IMG/M
3300015371\|Ga0132258_10792584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2389	Open in IMG/M
3300018431\|Ga0066655_10363862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	951	Open in IMG/M
3300021560\|Ga0126371_10705204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1157	Open in IMG/M
3300024323\|Ga0247666_1057361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	783	Open in IMG/M
3300025910\|Ga0207684_11027317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	689	Open in IMG/M
3300025913\|Ga0207695_10879684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	776	Open in IMG/M
3300025913\|Ga0207695_11367854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	588	Open in IMG/M
3300025917\|Ga0207660_11317533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	586	Open in IMG/M
3300025918\|Ga0207662_10717386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	701	Open in IMG/M
3300025920\|Ga0207649_11507964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	532	Open in IMG/M
3300025929\|Ga0207664_10924763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	783	Open in IMG/M
3300025929\|Ga0207664_11636849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	566	Open in IMG/M
3300025939\|Ga0207665_10568633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	882	Open in IMG/M
3300025939\|Ga0207665_10806867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	742	Open in IMG/M
3300025981\|Ga0207640_11602046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	587	Open in IMG/M
3300025990\|Ga0208527_1012298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1032	Open in IMG/M
3300025998\|Ga0208651_1004442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	990	Open in IMG/M
3300026023\|Ga0207677_10537344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1017	Open in IMG/M
3300026035\|Ga0207703_12218736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	525	Open in IMG/M
3300026142\|Ga0207698_11215527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	768	Open in IMG/M
3300026295\|Ga0209234_1076910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1267	Open in IMG/M
3300026306\|Ga0209468_1069222	All Organisms → cellular organisms → Bacteria	1185	Open in IMG/M
3300026325\|Ga0209152_10421349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	529	Open in IMG/M
3300026542\|Ga0209805_1436214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	509	Open in IMG/M
3300028654\|Ga0265322_10156210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	652	Open in IMG/M
3300029957\|Ga0265324_10217628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	649	Open in IMG/M
3300031226\|Ga0307497_10739787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	511	Open in IMG/M
3300031595\|Ga0265313_10087671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1402	Open in IMG/M
3300031747\|Ga0318502_10551838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	692	Open in IMG/M
3300031765\|Ga0318554_10292554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	927	Open in IMG/M
3300031782\|Ga0318552_10731891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	505	Open in IMG/M
3300031831\|Ga0318564_10479189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	541	Open in IMG/M
3300031860\|Ga0318495_10150585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1049	Open in IMG/M
3300031938\|Ga0308175_100010484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6941	Open in IMG/M
3300032892\|Ga0335081_11224636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	854	Open in IMG/M
3300033412\|Ga0310810_11004550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	712	Open in IMG/M
3300033475\|Ga0310811_10331345	All Organisms → cellular organisms → Bacteria	1724	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.55%
Host-Associated	Host-Associated	18.45%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.55%
Plants	Host-Associated → Plants	18.45%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.68%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.40%
Loam	Environmental → Terrestrial → Soil → Loam	24.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.97%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.27%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	20.39%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	15.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.91%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.91%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.94%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.97%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	4.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.88%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.91%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	2.91%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	2.91%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.91%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.94%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.94%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.97%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559006	Grass soil microbial communities from Rothamsted Park, UK - FI (heavy metals 2g/kg) assembled	Environmental	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
2189573002	Grass soil microbial communities from Rothamsted Park, UK - FE1 (NaCl 30g/L 5ml)	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005891	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_304	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012008	Permafrost microbial communities from Nunavut, Canada - A39_80cm_12M	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013294	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0M	Environmental	Open in IMG/M
3300013501	Permafrost microbial communities from Nunavut, Canada - A35_65cm_0.25M	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024323	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025990	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_102 (SPAdes)	Environmental	Open in IMG/M
3300025998	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_204 (SPAdes)	Environmental	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300028654	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG	Host-Associated	Open in IMG/M
3300029957	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG	Host-Associated	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031595	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG	Host-Associated	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FI_00764900	2166559006	Grass Soil	VALREFAPSFSIVSEERHEFGDAVEASVHQVVVELPQEVVGEEPELLAEKIVLAANGW
F62_02791790	2170459010	Grass Soil	AEERHEFGGSVEASVHQVVVEVPREYVGPEADVLAERIVLEANGWALQCIESRHSHI
FE1_07066690	2189573002	Grass Soil	SIVAEERHEFADDVEAALHQVVIGVPQEHVGGEPDFLAGQMVRAANTWAIDCIASRHGGGEL
C688J18823_106024031	3300001686	Soil	LALALRDFVPSFAIVSENRHEFGDAVEASVHQVVVEVPQDQVGGEADVLAEQIVLAANGWALECIASRHGAGEL*
C688J35102_1185999192	3300002568	Soil	EFLPSFAILSEERHEFEDGVEASVHQVVVEVPQEHAGRGADVLAEQIVLAANGWALDCIASRHGAGEL*
Ga0062590_1019535921	3300004157	Soil	RVNFGVFAGRHATPAEIDELAATLRELVPAFAILAEERHEFADSIEAKVHQVVVEVPREDAGDEPDFLAGQIVQAANGWALECIASRHGPGEL*
Ga0062595_1024196011	3300004479	Soil	AASLQELVPEFAIVAEERHEFGGDVEASVHQVVIDVAQEHDAGVPEVLGEAIVLAANGWALDCIASRHGAGEL*
Ga0062594_1028878371	3300005093	Soil	VPSFAIVSENRHEFGDAVEASVHQVVVEVPQGQAGSGSDVLAEQIVFAANTWALECIASRHGAGDL*
Ga0066679_101681453	3300005176	Soil	ALGLRALAPEFAIVAEERHEFGDAVEARVHQVVVEVPREHARERADVLAQRIVLAANGWALECIASRHGGGEL*
Ga0066679_103861252	3300005176	Soil	RVNFGVFAGRHATPAEIDEFAGALRELVPSFAIVSEERHEFEDAVEASVHQVVVELPREVVGEEPELLAEKIVLAANGWALECIASRHGPGV*
Ga0066388_1029160622	3300005332	Tropical Forest Soil	HATPAEIDELAIALRDFLPAFAIVSEERHEFGGAVEAAVHQVVVEAPQEHVGPERDVRAEQIVLVANGWALDCIASRHGAGQL*
Ga0070682_1013164701	3300005337	Corn Rhizosphere	PAEIDDLAATMREFVPEFSIVAEERHEFADDVEAALHQVVIGVPQEHAGGEPDFLAGQMVHAANGWAKDCIASRHGGGDL*
Ga0070687_1007312611	3300005343	Switchgrass Rhizosphere	GVFAGRHATPAEIDELAATLRELVPAFAILAEERHEFADSIEAKVHQVVVEVPHEDAGDEPDFLAGQIVQAANGWALECIASRHGPGGL*
Ga0008090_142431662	3300005363	Tropical Rainforest Soil	AAEVDELALALRDFLPSFAIVSEERHEFGDSVEASVHQVVVEVPQEMAGEEPELLAEQIVLAANGWALECIAVRHGPDV*
Ga0070714_1022863582	3300005435	Agricultural Soil	YATPAEIDDLAVALKDAVPSFAIVSEDRHEFGDAVEASVHQVVVEVPQEHAGGSPELLAERIVLATNGWALECIASRHGAGDL*
Ga0070710_109056072	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	FGVFAGRHASPAEIDELAAALRDLAPSFAIVSEERHEFGDAMEASVHQVVVEVPQEHAGSEADVLAERIVLAANGWALECIASRHGAGEL*
Ga0070708_1017628601	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VLKDSVPSFAIVSEVRHEFAQDVEASVHQVVVEVPQELAGEEPELLAEQIVLAANGWALGCIAVRNARTYS*
Ga0070678_1010177011	3300005456	Miscanthus Rhizosphere	VPAFAILAEERHEFADSIEAKVHQVVVEVPHEDAGDEPDFLAGQIVQAANGWALECIASRHGPGGL*
Ga0070706_1010119931	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	AIVSEVRHEFAQDVEASVHQVVIEVPQELAGEEPELLAEQIVLAANGWALGCIAVRNARTYS*
Ga0070707_1011483071	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	RVNFGLFAGRHATPAEIDELAGTMREFVPEFSIVAEERHEFADDVEAALHQVVIGVPQEHVGGEPDFLAGQMVRAANTWAIDCIASRHGGGEL*
Ga0070741_113166941	3300005529	Surface Soil	INFGVFAGRTVTPAEIDDLAAALRDLLPSFAIVSEERHEFGGDVEASVHQVVVEIPREHAGPEPDVLAERIVLAANGWALDCIASRSGAGEL*
Ga0070684_1023097621	3300005535	Corn Rhizosphere	ERHEFADSIEAKVHQVVVEVPHEDAGDEPDFLAGQIVQAANGWALECIASRHGPGGL*
Ga0070731_102921173	3300005538	Surface Soil	AEDRHEFGSSAEAAVHQVVVEVPREHAGSQPDVLAEQIVLAANGWALDCIASRHGGGDL*
Ga0070731_111620462	3300005538	Surface Soil	RHEFGGTVEASVQQVVVEVPREHAGPEPDVLAERIVLGANGWALDCIAARSGAGDLEP*
Ga0070686_1013529081	3300005544	Switchgrass Rhizosphere	DFVPSFAIVSENRHEFGDSVEASVHQVVVEVPQEYASEGQDVLAERIVFAANGWALECIASRHGAGDL*
Ga0070695_1016527332	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	TPAEIDEFAVALREFVPSFSIVSEVRHEFGDAVEASVHQVVVELPQEVVGEEPELLAEKIVFTANGWALECIASRHGAGDL*
Ga0070696_1005298492	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	ELVPAFAILAEERHEFADSIEAKVHQVVVEVPHEDAGDEPDFLAGQIVQAANGWALECIASRHGPGGL*
Ga0066661_104741381	3300005554	Soil	FGLFAGRHVTPAEIDELATALSELLPEFSIVAEERHEFGGDVEASVHQVVIEVAQEHDAGAPDVFGERIVLAANGWALDCIASRHGGGDL*
Ga0066670_102827221	3300005560	Soil	AIVAEDRHEFGNSAEAAVHQVVVEVPREHAVTEPDVLAEQIVLAANGWALECIASRHGGGDL*
Ga0068855_1019453661	3300005563	Corn Rhizosphere	EFADSIEAKVHQVVVEVPHEDAGDEPDFLAGQIVQAANGWALECIASRHGPGGL*
Ga0066708_107544881	3300005576	Soil	NFGVFAGRHATPAEIDELALNLRDFLASFAIVSEVRHEFGGAVEASVHQVVVEVPQENAGDVPELLAEQIVFAANGWALDCIASRHGGGEL*
Ga0068856_1025856772	3300005614	Corn Rhizosphere	LFAGRHATPAEIDDLAATMREFVPEFSIVAEERHEFADDIEAALHQVVIGVPQEHAGGEPDFLAGQMVHAANGWAKDCIASRHGGGDL*
Ga0066903_1007590574	3300005764	Tropical Forest Soil	RHATPAEIDELALTLRDFLPSFAILSEERHEFGDSVEASVHQVVVEVAQETAGEEPELLAEQIVLAASGWALECIAVRHGPEV*
Ga0075283_10503911	3300005891	Rice Paddy Soil	LSDLLPAFAIVAEERHEFGGAIEASVHQVVVEVPRGHGGDDPDVLAEQIVLAANGWALECIASRHGAGEL*
Ga0070717_119551251	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	RALAPSFAILSEERHEFGEGVEASVHQVVVEVPQEMAGEEPKLLAEQIVLAANGWALDCIAARHGPEV*
Ga0066652_1002917601	3300006046	Soil	SLRDFLPSFAIVSEVRHEFAGAVEASVHQVVVEVPQEHAGDARDLLAEQIVFAANGWALECIASRHGAGEL*
Ga0066652_1014285121	3300006046	Soil	HATPAEIDELALALRDLVPSFAILSEERHEFEDSVEASVHQVVVEVPQEHAGRGADVLAEQIVLAANGCALECIASRHGAGEL*
Ga0070716_1010212891	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	ELAQSVREYAPSFAIVSENRHEFEDAVEASVHQVVVEVPHEIAGEDPERLAEQIVLAANGWALECIASRHGAGEL*
Ga0070716_1016549401	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	LRELVPAFAILAEERHEFADSVEAKVHQVVVEVPHEDAGDEPDFLAGQIVQAANGWALECIASRHGPGEL*
Ga0066658_100784291	3300006794	Soil	APEFAIVAEERHEFGDAAEARVHQVVVEVPREHARERADVLAQRIVLAANGWALECIASRHGGGEL*
Ga0066665_115264871	3300006796	Soil	EIDDLAASLRELVPEFAIVAEERHEFGGDVEASVHQVVIEVAQEHDAGVPEVLGERIVLAANGWALDCIASRHGAGAL*
Ga0075424_1017561032	3300006904	Populus Rhizosphere	DELAATLRELVPAFAILAEERHEFADSIEAKVHQVVVEVPREDAGDEPDFLAGQIVQAANGWALECIASRHGAGQL*
Ga0075424_1023922252	3300006904	Populus Rhizosphere	NFGVFAGRYATPAEIDELAASLRELVPQFAVISENRHEFGGAVEASVHQVVVEVPREHAGTESDVLAQRIVLKANGWALDCIASRSTAP*
Ga0105240_118137161	3300009093	Corn Rhizosphere	VFAGRHATPAEIDELALALRGFASSFAIVSEDRHEFADAVEASVHQVVVEVPHESLAGSEEPELLAERIVFAANGWALECIASRHGAGDL*
Ga0105240_127620832	3300009093	Corn Rhizosphere	ELAASLRDLAPSFAIVAEERHEFGGDVEAAVHQVVIEVPRENAGPQPDVLAQRIVMAANGWALECIASRHGAGQL*
Ga0105237_114680232	3300009545	Corn Rhizosphere	ATMREFVPEFSIVAEERHEFADDVEAALHQVVIGVPQEHAGGEPDFLAGQMVHAANGWAKDCIASRHGGGDL*
Ga0126380_105178163	3300010043	Tropical Forest Soil	NFGVFAGRHATPAEIDELAASLRESVPMFAIVAEDRHEFGGDVEAALHQVVVEVPQERAGTDPDVLGEQIVLAANGWALDCIASRHGGGEL*
Ga0134080_103918241	3300010333	Grasslands Soil	FLPSFAIVSEVRHEFVDAVEASVHQGVVEVPQEHAGDRRDLLAEQIVLAANGWALECIASRHGAGEL*
Ga0134062_104123092	3300010337	Grasslands Soil	RHEFGDDVEAALHQVVLEVPRENSGENPDLLAEQIVRMANDWALECIASRHGGGEL*
Ga0126377_114775292	3300010362	Tropical Forest Soil	RNLVQAFAIVAEERHEFADSAEAAVHQVVIEVPCEYAGAEPDVLAERIVLAANGWALDCIASRHGAGEL*
Ga0126381_1044718261	3300010376	Tropical Forest Soil	GRHASPAEIDELALALRDFVPSFAILSEDRHEFGAAVEASVHQVVIEVPQEHAGPEPAVRAEQIVLTANGWALDCIASRHL*
Ga0126383_126919811	3300010398	Tropical Forest Soil	AALRNLVPAFAIVAEDRHEFADSAEAAVHQVVIEVPREHWSREPDVFAEHIVLAANGWALGCIASRHGGGDL*
Ga0120174_10370842	3300012008	Permafrost	LSEERHEFGGAVEAALHQVVVEVAQEHARDKPDLLAQQIVLTANGWALDCIASRHGGGEL
Ga0137364_104199431	3300012198	Vadose Zone Soil	AGRHATPAEIDEFAVALRGFVPSFSIVSEERHEFEDAVEASVHQVVVELPREVVGEEPELLAEKIVLAANGWALECIASRHGPGV*
Ga0137364_105633441	3300012198	Vadose Zone Soil	AGRHATPAEIDEFAVALRGFVPSFSIVSEERHEFEDAVEASVHQVVVELPQEVVGEEPELLAEKIVLAANGWALECIASRHGPGV*
Ga0137387_107033132	3300012349	Vadose Zone Soil	FAILAEERHEFAGSVEARVHQVVVEVPRDSASAEPDFLAGQIVHAANGWALDCIASRHGPGEL*
Ga0137369_106724352	3300012355	Vadose Zone Soil	TPAEIDEFAVALRGFVPSFSIVSEERHEFEDAVEASVHQVVVELPREVVGEEPELLAEKIVLAANGWALECIASRHGPGV*
Ga0137371_109013932	3300012356	Vadose Zone Soil	LAASLRELVPEFAIVAEERHEFGGDVEASVHQVVIEVAQEHDAGVPEVVGEQIVLAANGWALDCIASRHGAGAL*
Ga0137359_112701041	3300012923	Vadose Zone Soil	FAGRHATPAEIDELATALGELVPAFAILAEQRHEFAGSVEARVHQVVVEVPRDSAGPEPDFLAGQIVHAANGWALDCIASRHGPGEL*
Ga0164300_101771612	3300012951	Soil	AGRHATPAEIDELAATLRELVPAFAIRAEDRHEFSDSIEANVHQVVVEVPHEDAGDEPDFLAGQIVQAANGWALECIASRHGPGEL*
Ga0164303_101328171	3300012957	Soil	AFAILAEERHEFADSVEAKVHQVVVEVPHEDAGDEPDFLAGQIVQAANGWALECIASRHGPGEL*
Ga0134087_107118072	3300012977	Grasslands Soil	LLPSFAIVSEERHEFSDAAEASVHKVVVEVPQGLGGEEPELLAEHIVLEANGWALECIAARHGPDV*
Ga0120150_11073241	3300013294	Permafrost	FLLDFSIVSEERHEFGGAVEAALHQVVVEVAQEHARDKPDLLAQQIVLTANGWALDCIASRHGGGEL*
Ga0120154_10530271	3300013501	Permafrost	LGVFAGRHATPAEIDELAATLNEFLLDFSIVSEERHEFGGAVEAALHQVVVEVAQEHARDKPDLLAQQIVLTANGWALDCIASRHGGGEL*
Ga0134079_103828711	3300014166	Grasslands Soil	FAIVSEERHEFEDAVEASVHQVVVELPQEVVGEEPELLAEKIVLAANGWALECIASRHGPGV*
Ga0134073_101807352	3300015356	Grasslands Soil	VPSFSIVSEERHEFEDAVEASVHQVVVELPQEVVGEEPELLAEKIVLAANGWALECIASRHGPGV*
Ga0132258_107925841	3300015371	Arabidopsis Rhizosphere	ATPAEIDELAATLRELVPAFAILAEERHEFADSIEAKVHQVVVEVPHEDAGDEPDFLAGQIVQAANGWALECIASRHGPGEL*
Ga0066655_103638621	3300018431	Grasslands Soil	PAFAILAEERHEFGGAVEASVHQVVVDVPREHAGDKADVLAERIVLEANGWALECIESRHAEI
Ga0126371_107052041	3300021560	Tropical Forest Soil	DLVPSFAILSEERHEFGDAVEASVHQVVVEVPQEHAGPEPDVLAEQIVLAANGWALECIASRHGAGEL
Ga0247666_10573612	3300024323	Soil	AEIDDLATRVSDLVPAFAIVAEERHEFGGAVEAAVHQVVVDVRSEHAGPETDVLAERIVLEANGWALECIESRHAEL
Ga0207684_110273172	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	AAVLKDSVPSFAIVSEVRHEFAQDVEASVHQVVIEVPQELAGEEPELLAEQIVLAANGWALECIAVRNARTYS
Ga0207695_108796842	3300025913	Corn Rhizosphere	EERHEFGDAAEARVHQVVVEVPREHARERADVLAQQIVLTANGWALECIASRHGGGEL
Ga0207695_113678541	3300025913	Corn Rhizosphere	ELAASLRDLAPSFAIVAEERHEFGGDVEAAVHQVVIEVPRENAGPQPDVLAQRIVMAANGWALECIASRHGAGQL
Ga0207660_113175331	3300025917	Corn Rhizosphere	ALTLRDFVPSFAIVSENRHEFGDSVEASVHQVVVEVAQEYASEGQDVLAERIVFAANGWALECIASRHGAGDL
Ga0207662_107173862	3300025918	Switchgrass Rhizosphere	FAILAEERHEFADSIEAKVHQVVVEVPHEDAGDEPDFLAGQIVQAANGWALECIASRHGPGGL
Ga0207649_115079641	3300025920	Corn Rhizosphere	LALTLRDFVPSFAIVSENRHEFGDSVEASVHQVVVEVPQEYASEGQDVLAERIVFAANGWALECIASRHGAGDL
Ga0207664_109247633	3300025929	Agricultural Soil	FAIVSEDRHEFGDAVEASVHQVVVEVPQEHAGGSPELLAERIVLATNGWALECIASRHGAGDL
Ga0207664_116368491	3300025929	Agricultural Soil	LAMSLREHAPSFAIVSEERHEFEAEVEAAVHQVVIEVPQEHAGDEPDALAEQIVLTANDWALECIASRHGAGEL
Ga0207665_105686332	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	NFGVFAGRHATPAEIDELAVALRELVPAFAILAEERHEFADSMEAKVHQVVVEVPHEDAGDEPDFLAGQIVQAANGWALECIASRHGPGEL
Ga0207665_108068671	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	EVRVNFGVFAGRYATPAEIDELALALREFLPSFAIVSEQRHEFGGAVEASVHQIVVEIPQEHAGSEPDVLAEQIVLAANGWALECIAARHGPEM
Ga0207640_116020462	3300025981	Corn Rhizosphere	EIDEFAVALREFVPSFSIVSEVRHEFGDAVEASVHQVVVELPQEVVGEEPELLAEKIVFTANGWALECIASRHGAGDL
Ga0208527_10122981	3300025990	Rice Paddy Soil	FAGRHATPAEIDGLAGALRDLLASFAIVSEERHEFGRGVEASIHQVVIEVPREHAGDDPDVLAERIVLAANGWAIDCIASRHGGGEL
Ga0208651_10044421	3300025998	Rice Paddy Soil	RDLLPSFAVVAEERHEFGSAVEAAVHQVVIEVEREHVSGDPDVLAERIVLLANGWAIECIASRHGGGDL
Ga0207677_105373442	3300026023	Miscanthus Rhizosphere	IVAEERHEFADDVEAALHQVVIGVPQEHAGGEPDFLAGQMVHAANGWAKDCIASRHGGGD
Ga0207703_122187361	3300026035	Switchgrass Rhizosphere	AATLRELVPAFAILAEELHEFADSIEAKVHQVVVEVPHEDAGDEPDFLAGQIVQAANGWALECIASRHGPGGL
Ga0207698_112155271	3300026142	Corn Rhizosphere	TPAEIDDLALALRDFVPSFAIVSENRHEFADAVEASVHQVVVEVPQGQAGSGSDVLAEQIVFAANTWALECIASRHGAGDL
Ga0209234_10769101	3300026295	Grasslands Soil	GVFAGRHATPAEIDELALGLRALAPEFAIVAEERHEFGDAVEARVHQVVVEVPREHARERADVLAQRIVLAANGWALECIASRHGGGEL
Ga0209468_10692224	3300026306	Soil	PSFSIVSEERHEFEDAVEASVHQVVVELPQEVVGEEPELLAEKIVLAANGWALECIASRHGPGV
Ga0209152_104213492	3300026325	Soil	ERHEFGDAAEARVHQVVVEVPREHARERADVLAQRIVLAANGWALECIASRHGGGEL
Ga0209805_14362142	3300026542	Soil	AEIDELALGLRALAPEFAIVAEERHEFGDAVEARVHQVVVEVPREHARERADVLAQRIVLAANGWALECIASRHGGGEL
Ga0265322_101562101	3300028654	Rhizosphere	AFAIVAEERHEFGGAVEASVHQVVVDIPREHAGPEADVLAERIVLAANGWALGCIEARHAEL
Ga0265324_102176282	3300029957	Rhizosphere	VPAFAIVAEERHEFGGAVEASVHQVVVDIPREHAGPEADVLAERIVLAANGWALGCIEARHAEL
Ga0307497_107397871	3300031226	Soil	PAEIDELAATLRELVPAFAILAEERHEFADSIEAKVHQVVVEVPREDAGDEPDFLAGQIVQAANGWALECIASRHGAGQL
Ga0265313_100876711	3300031595	Rhizosphere	GRTVTPAEIDDLAGRVSDLVPAFAIVAEERHEFGGAVEASVHQVVVDIPREHAGPEADVLAERIVLAANGWALDCIKARHAEL
Ga0318502_105518382	3300031747	Soil	FAGRTVTPAEIDELARHVSGLAPAFAIVAEERHEFGGAVEASVHQVVVEVRGEHAGPETDVLAERIVLEATGWALDCIESRHAEL
Ga0318554_102925542	3300031765	Soil	ALRELAPSFAIVSENRHEFGDAVEASVHQVVVEVPQERAGEEPELLAEQIVLAANGWALECIAARHGPEV
Ga0318552_107318912	3300031782	Soil	RELAPSFAIVSENRHEFGDAVEASVHQVVVEVPQERAGEEPELLAEQIVLAANGWALECIAARHGPEV
Ga0318564_104791892	3300031831	Soil	LAPSFAIVSENRHEFGDAVEASVHQVVVEVPQERAGEEPELLAEQIVLAANGWALECIAARHGPEV
Ga0318495_101505852	3300031860	Soil	GVFAGRHATPAEIDELALALRELAPSFAIVSENRHEFGDAVEASVHQVVVEVPQERAGEEPELLAEQIVLAANGWALECIAARHGPEV
Ga0308175_1000104841	3300031938	Soil	DLVPSFAIVSENRHEFGNAVEASVHQVVVEVAQEIAGEERELLAEQIVFAANGWALECIASRHGPGEL
Ga0335081_112246361	3300032892	Soil	EFARSFAIVAEERHEFEDAVEASVHQVVVEVARENVGEEPELLAGQIVLAANGWAQECIAARKGPSV
Ga0310810_110045502	3300033412	Soil	LRDFVPSFAIVSENRHEFGDSVEASVHQVVVEVPQEYASEGQDVLAERIVFAANGWALECIASRHGAGDL
Ga0310811_103313451	3300033475	Soil	AEIDELALTLRDFVPSFAIVSENRHEFGDSVEASVHQVVVEVPQEYASEGQDVLAERIVFAANGWALECIASRHGAGDL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099732

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences