Metagenome / Metatranscriptome Family F099743

Basic Information
Family ID	F099743
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	41 residues
Representative Sequence	LPPANPTPVLGDVSQRRGRLAGFLHSFSRSSLLDETEGGRAR
Number of Associated Samples	98
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	94.17 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.21

Most Common Taxonomy
Group	Unclassified (68.932 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.214 % of family members)
Environment Ontology (ENVO)	Unclassified (19.417 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.748 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00005	ABC_tran	82.52
PF08352	oligo_HPY	13.59
PF00496	SBP_bac_5	1.94
PF01979	Amidohydro_1	0.97

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.93 %
All Organisms	root	All Organisms	31.07 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.93 %
cellular organisms	root	All Organisms → cellular organisms	31.07 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.93 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	31.07 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	16.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.93 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	15.53 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.93 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	9.71 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.88 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.93 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	9.71 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.91 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	2.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.93 %
Acidimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	9.71 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	2.91 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.93 %
Acidithrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix	8.74 %
unclassified Burkholderia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia	2.91 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.91 %
Ferrimicrobium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Ferrimicrobium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.93 %
Acidithrix ferrooxidans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	8.74 %
Burkholderia sp. Ac-20353	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia → Burkholderia sp. Ac-20353	2.91 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.91 %
Ferrimicrobium acidiphilum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Ferrimicrobium → Ferrimicrobium acidiphilum	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.93 %
Acidithrix ferrooxidans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	8.74 %
Burkholderia sp. Ac-20353	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia → Burkholderia sp. Ac-20353	2.91 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.91 %
Ferrimicrobium acidiphilum DSM 19497	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Ferrimicrobium → Ferrimicrobium acidiphilum → Ferrimicrobium acidiphilum DSM 19497	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003218\|JGI26339J46600_10024676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1727	Open in IMG/M
3300003505\|JGIcombinedJ51221_10345299	Not Available	605	Open in IMG/M
3300005158\|Ga0066816_1009854	Not Available	693	Open in IMG/M
3300005179\|Ga0066684_11038820	Not Available	527	Open in IMG/M
3300005181\|Ga0066678_10070674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2043	Open in IMG/M
3300005345\|Ga0070692_10633461	Not Available	712	Open in IMG/M
3300005347\|Ga0070668_101734103	Not Available	574	Open in IMG/M
3300005455\|Ga0070663_100146608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1806	Open in IMG/M
3300005534\|Ga0070735_10224354	All Organisms → cellular organisms → Bacteria → Proteobacteria	1145	Open in IMG/M
3300005539\|Ga0068853_101431940	Not Available	669	Open in IMG/M
3300005542\|Ga0070732_10808999	Not Available	572	Open in IMG/M
3300005764\|Ga0066903_107206712	Not Available	575	Open in IMG/M
3300005843\|Ga0068860_101443222	Not Available	709	Open in IMG/M
3300005921\|Ga0070766_10501402	Not Available	806	Open in IMG/M
3300006173\|Ga0070716_100569354	Not Available	847	Open in IMG/M
3300006173\|Ga0070716_101623580	Not Available	531	Open in IMG/M
3300006175\|Ga0070712_100981459	Not Available	730	Open in IMG/M
3300006755\|Ga0079222_12664347	Not Available	503	Open in IMG/M
3300006804\|Ga0079221_11754650	Not Available	507	Open in IMG/M
3300006953\|Ga0074063_10037458	Not Available	537	Open in IMG/M
3300007982\|Ga0102924_1278017	Not Available	676	Open in IMG/M
3300009148\|Ga0105243_10311231	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1431	Open in IMG/M
3300009156\|Ga0111538_14021955	Not Available	508	Open in IMG/M
3300009162\|Ga0075423_10623750	All Organisms → cellular organisms → Bacteria	1137	Open in IMG/M
3300009520\|Ga0116214_1121729	All Organisms → cellular organisms → Bacteria	964	Open in IMG/M
3300009623\|Ga0116133_1123729	Not Available	667	Open in IMG/M
3300009839\|Ga0116223_10184458	All Organisms → cellular organisms → Bacteria → Proteobacteria	1282	Open in IMG/M
3300010321\|Ga0134067_10127567	Not Available	892	Open in IMG/M
3300010362\|Ga0126377_13122392	Not Available	535	Open in IMG/M
3300010399\|Ga0134127_12548715	Not Available	591	Open in IMG/M
3300011120\|Ga0150983_14042260	Not Available	822	Open in IMG/M
3300012201\|Ga0137365_11135858	Not Available	561	Open in IMG/M
3300012212\|Ga0150985_107801316	Not Available	597	Open in IMG/M
3300012354\|Ga0137366_10788248	Not Available	675	Open in IMG/M
3300012357\|Ga0137384_11371390	Not Available	555	Open in IMG/M
3300012498\|Ga0157345_1011551	Not Available	785	Open in IMG/M
3300012929\|Ga0137404_10219969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	1618	Open in IMG/M
3300013296\|Ga0157374_10766332	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300013306\|Ga0163162_11804702	Not Available	699	Open in IMG/M
3300014745\|Ga0157377_10510643	Not Available	842	Open in IMG/M
3300017933\|Ga0187801_10473045	Not Available	528	Open in IMG/M
3300017943\|Ga0187819_10099154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	1740	Open in IMG/M
3300017947\|Ga0187785_10705298	Not Available	530	Open in IMG/M
3300017955\|Ga0187817_10105122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	1779	Open in IMG/M
3300017959\|Ga0187779_10366570	All Organisms → cellular organisms → Bacteria → Terrabacteria group	933	Open in IMG/M
3300017975\|Ga0187782_10520660	Not Available	910	Open in IMG/M
3300018007\|Ga0187805_10390800	Not Available	645	Open in IMG/M
3300018009\|Ga0187884_10451932	Not Available	516	Open in IMG/M
3300018035\|Ga0187875_10418448	Not Available	715	Open in IMG/M
3300018042\|Ga0187871_10053265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	2426	Open in IMG/M
3300018058\|Ga0187766_11103100	Not Available	570	Open in IMG/M
3300020070\|Ga0206356_11403161	Not Available	553	Open in IMG/M
3300020579\|Ga0210407_10437944	All Organisms → cellular organisms → Bacteria → Proteobacteria	1023	Open in IMG/M
3300020581\|Ga0210399_10537021	All Organisms → cellular organisms → Bacteria → Proteobacteria	970	Open in IMG/M
3300021170\|Ga0210400_11412950	Not Available	554	Open in IMG/M
3300021181\|Ga0210388_10055568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	3307	Open in IMG/M
3300021181\|Ga0210388_11759969	Not Available	511	Open in IMG/M
3300021407\|Ga0210383_11693827	Not Available	518	Open in IMG/M
3300021474\|Ga0210390_10673693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Ferrimicrobium → Ferrimicrobium acidiphilum → Ferrimicrobium acidiphilum DSM 19497	863	Open in IMG/M
3300021475\|Ga0210392_10134348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	1672	Open in IMG/M
3300021479\|Ga0210410_11193586	Not Available	652	Open in IMG/M
3300021861\|Ga0213853_10833316	Not Available	673	Open in IMG/M
3300024222\|Ga0247691_1037754	Not Available	735	Open in IMG/M
3300024283\|Ga0247670_1042955	Not Available	814	Open in IMG/M
3300025905\|Ga0207685_10535956	Not Available	621	Open in IMG/M
3300025915\|Ga0207693_10994163	Not Available	641	Open in IMG/M
3300025939\|Ga0207665_10803562	Not Available	743	Open in IMG/M
3300026088\|Ga0207641_11908152	Not Available	595	Open in IMG/M
3300026494\|Ga0257159_1068890	Not Available	609	Open in IMG/M
3300026496\|Ga0257157_1043800	Not Available	748	Open in IMG/M
3300027570\|Ga0208043_1007070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	3861	Open in IMG/M
3300027889\|Ga0209380_10037183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2755	Open in IMG/M
3300027898\|Ga0209067_10683985	Not Available	594	Open in IMG/M
3300028906\|Ga0308309_11666852	Not Available	542	Open in IMG/M
3300028906\|Ga0308309_11721294	Not Available	532	Open in IMG/M
3300029999\|Ga0311339_10810098	Not Available	900	Open in IMG/M
3300029999\|Ga0311339_10934699	Not Available	819	Open in IMG/M
3300030580\|Ga0311355_10534279	Not Available	1118	Open in IMG/M
3300030707\|Ga0310038_10496924	Not Available	516	Open in IMG/M
3300031090\|Ga0265760_10288576	Not Available	579	Open in IMG/M
3300031198\|Ga0307500_10048849	All Organisms → cellular organisms → Bacteria	1016	Open in IMG/M
3300031421\|Ga0308194_10042245	All Organisms → cellular organisms → Bacteria	1131	Open in IMG/M
3300031543\|Ga0318516_10075412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	1876	Open in IMG/M
3300031543\|Ga0318516_10533520	Not Available	672	Open in IMG/M
3300031564\|Ga0318573_10234576	All Organisms → cellular organisms → Bacteria	977	Open in IMG/M
3300031668\|Ga0318542_10438673	Not Available	676	Open in IMG/M
3300031682\|Ga0318560_10299708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia → Burkholderia sp. Ac-20353	866	Open in IMG/M
3300031713\|Ga0318496_10808300	Not Available	516	Open in IMG/M
3300031724\|Ga0318500_10100474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia → Burkholderia sp. Ac-20353	1315	Open in IMG/M
3300031754\|Ga0307475_11149127	Not Available	606	Open in IMG/M
3300031782\|Ga0318552_10592990	Not Available	565	Open in IMG/M
3300031860\|Ga0318495_10228466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia → Burkholderia sp. Ac-20353	835	Open in IMG/M
3300031910\|Ga0306923_10973881	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300031912\|Ga0306921_11723651	Not Available	676	Open in IMG/M
3300031943\|Ga0310885_10089625	All Organisms → cellular organisms → Bacteria	1375	Open in IMG/M
3300031945\|Ga0310913_10159704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1562	Open in IMG/M
3300032054\|Ga0318570_10587364	Not Available	508	Open in IMG/M
3300032089\|Ga0318525_10500813	Not Available	622	Open in IMG/M
3300032770\|Ga0335085_10103238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	3681	Open in IMG/M
3300032954\|Ga0335083_11365129	Not Available	543	Open in IMG/M
3300033289\|Ga0310914_11736545	Not Available	528	Open in IMG/M
3300033290\|Ga0318519_10503984	Not Available	729	Open in IMG/M
3300034065\|Ga0334827_126080	Not Available	818	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.38%
Host-Associated	Host-Associated	12.62%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.73%
Plants	Host-Associated → Plants	12.62%
Aquatic	Environmental → Aquatic	11.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.84%
Freshwater	Environmental → Aquatic → Freshwater	9.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.80%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.83%
Peat	Environmental → Terrestrial → Peat	3.88%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.97%
Sediment	Environmental → Aquatic → Sediment	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.43%
Loam	Environmental → Terrestrial → Soil → Loam	13.59%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.74%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.97%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	29.13%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.80%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.88%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.97%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.97%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.21%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.88%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.88%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.88%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.88%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.91%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.94%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.94%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.97%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.97%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.97%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.97%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.97%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.97%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.97%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005158	Soil and rhizosphere microbial communities from Laval, Canada - mgHAA	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012498	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.yng.090410	Host-Associated	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024222	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK32	Environmental	Open in IMG/M
3300024283	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK11	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300034065	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 1-5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26339J46600_100246761	3300003218	Bog Forest Soil	IAGRWLRPADPTPVLAEVSQRRGKVAGFLHLFSRSSLLDETEGGRP*
JGIcombinedJ51221_103452991	3300003505	Forest Soil	SRIAGRWLKPADPTPVLSEISQRRTGFAGFLHSFSRSSLLDKAEAGERP*
Ga0066816_10098542	3300005158	Soil	ANPTPVLSDVPQRRGRLAGFLHSFSRSSLLDDTEGGRAR*
Ga0066684_110388201	3300005179	Soil	RPADPTPVLSDISQRRRGLSGFLHSFSRSSLLDETEGGRTR*
Ga0066678_100706741	3300005181	Soil	GHWLPPADPTPVLSDASQRRGRLAGFLHSFSRSSLVDETKGGDAR*
Ga0070692_106334611	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	ANPTPVLGDVSQHRGRVASFLHSFSRSSLIDETKVGDAR*
Ga0070668_1017341032	3300005347	Switchgrass Rhizosphere	PANPTPVLGDVSQRRGRLAGFLHSFSRSSLLDETEGGRAQ*
Ga0070663_1001466081	3300005455	Corn Rhizosphere	PPANPTPVLGDVSQHRGRVASFLHSFSRSSLIDETKVGDAR*
Ga0070735_102243541	3300005534	Surface Soil	GHWLRPADPTPVLSEISQRRKGLAGFLHSFSRRSLLEGAEAGERR*
Ga0068853_1014319402	3300005539	Corn Rhizosphere	ANPTPVLGDVSQHRGRVASFLHSFSRSSLIDETKGGDAR*
Ga0070732_108089991	3300005542	Surface Soil	WLRPTDPTPVLQEVLQRRTGVGGFLHSFSRSSLLDESRAGDTL*
Ga0066903_1072067122	3300005764	Tropical Forest Soil	PVLSDVSQRRGRVAGFLHSFSRSSLIDETKRGDAR*
Ga0068860_1014432221	3300005843	Switchgrass Rhizosphere	AGRWLPPANPTPVLGDVSQRRGRLAGFLHSFSRSSLLDETEGGRAQ*
Ga0070766_105014021	3300005921	Soil	PVLSEISQRRNGFAGFLHSFSRSSLVDKAEAGERP*
Ga0070716_1005693541	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	LPPANPTPVLGDVSQRRGRLAGFLHSFSRSSLLDETEGGRAR*
Ga0070716_1016235801	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	LPPANPTPVLGDVSQRRGRLAGFLHSFSRSSLLDETEGGQAR*
Ga0070712_1009814591	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	ADPTPVLGEIGQRRGRVSGFLHSFSRSSLLDENEGGRAR*
Ga0079222_126643472	3300006755	Agricultural Soil	RWLPPANPTPVLGDVSQRRGRVAGFLHSFSRSSLIDETKGGDAR*
Ga0079221_117546503	3300006804	Agricultural Soil	RWLPPANPTPVLGDVSRGRGRLAGFLHSFSRSSLLDETEGEQAR*
Ga0074063_100374582	3300006953	Soil	RIAGRWLPPANPTPVLGDVSRRRGRLAGFLHSFSRSSLLDDTEGGRAR*
Ga0102924_12780172	3300007982	Iron-Sulfur Acid Spring	PVLSEISQRRKGLAGFLHSFSRSSLLDGADAGERR*
Ga0105243_103112313	3300009148	Miscanthus Rhizosphere	VLSDASQRRGRLAGFLHSFSRSSLVDETKGGDAR*
Ga0111538_140219552	3300009156	Populus Rhizosphere	VLGDVSRGRGRLAGFLHSFSRSSLHDETEGGQAR*
Ga0075423_106237502	3300009162	Populus Rhizosphere	LPPANPTPVLGDVSQRRGRVAGFLHSFSRSSLIDETKGGDAR*
Ga0116214_11217291	3300009520	Peatlands Soil	GRWLRPTDPTPVLAQVQQRRTGLAGFLHSFSRSSLLDRTEAGDTL*
Ga0116133_11237291	3300009623	Peatland	PTPVLAEVVQHRGKLAGFLHSFSRSSLLDETERAGHR*
Ga0116223_101844581	3300009839	Peatlands Soil	ADPTPVLSEISQRRHGFAGFLHSFSRRSLLDQAEAGERR*
Ga0134067_101275671	3300010321	Grasslands Soil	TPVLSDASQRRGRLAGFLHSFSRSSLLDETEGGKAR*
Ga0126377_131223921	3300010362	Tropical Forest Soil	AGRWLKPADPTPVLSDISQRRGRVAGFLHSFSRSSLLDETKGGDAR*
Ga0134127_125487151	3300010399	Terrestrial Soil	PANPTPVLGDVSQGRGRLAGFLHSFSRSSLIDETKGGDAR*
Ga0150983_140422601	3300011120	Forest Soil	DPTPVLSDASQRRGRLAGFLHSFSRSSLVDETKGGDAR*
Ga0137365_111358582	3300012201	Vadose Zone Soil	VLSDISQRRGRLGGFLHSFSRSSLLDETEGGRAR*
Ga0150985_1078013162	3300012212	Avena Fatua Rhizosphere	SPRSAGRWLRPADPTPVLGEIANQRGRVAGFLHSFSRSSLLDDTEGSRAR*
Ga0137366_107882481	3300012354	Vadose Zone Soil	PVLAEVAQRRGKLAGFLHSFSRSSLLDETEGGQAR*
Ga0137384_113713901	3300012357	Vadose Zone Soil	PTPVLSDVSQRRGRLAGFLHSFSRSSLLDDTEGGRAR*
Ga0157345_10115512	3300012498	Arabidopsis Rhizosphere	GRWLPPANPTPVLGDVSQRRGRLAGFLHSFSRSSLLDETEGGRTR*
Ga0137404_102199693	3300012929	Vadose Zone Soil	PADPTPVLSDGAQHRGRVAGFLHSFSRSSLLDETEGGRAR*
Ga0157374_107663321	3300013296	Miscanthus Rhizosphere	TPVLGDVSQRRGRLAGFLHSFSRSSLLDETEGGRAQ*
Ga0163162_118047021	3300013306	Switchgrass Rhizosphere	PTPVLGDVSQHRGRVAGFLHSFSRSSLIDETKGGDAR*
Ga0157377_105106431	3300014745	Miscanthus Rhizosphere	TPVLGDVSQRRGKVAGFLHSFSRSSLLDETEGGQTR*
Ga0187801_104730452	3300017933	Freshwater Sediment	ADPTPVLADITQHRRGLAGFLHSFSRSSLLDKGEAGVDL
Ga0187819_100991541	3300017943	Freshwater Sediment	NPTPVLAEVSQHRGRVATFLNSFSRSSLLDEAGAGES
Ga0187785_107052982	3300017947	Tropical Peatland	AGRWLRPADPTPVLSDVSQRRGRVAGFLHSFSRSSLIDETKRGDAR
Ga0187817_101051223	3300017955	Freshwater Sediment	IAGHWLRPTDPTPVLEQVQQRRTGLAGFLHSFSRSSLLDRTEAGDTL
Ga0187779_103665702	3300017959	Tropical Peatland	IAGRWLKPADPTPVLAEISQRRSGFAGFLHSFSRSSLLDKGEAGEGR
Ga0187782_105206602	3300017975	Tropical Peatland	PADPTPVLAEVSQRRGPIARFLRSFSRSSLLDETAGGER
Ga0187805_103908001	3300018007	Freshwater Sediment	SRIAGHWLPPANPTPVLAEVSQHRGRVATFLNSFSRSSLLDEAGAGES
Ga0187884_104519321	3300018009	Peatland	RIAGHWLRPADPTPVLAELSRHRGKLAGFVHSFSRSSQLDETEGGQAR
Ga0187875_104184482	3300018035	Peatland	WLPPADPTPVLAEVVQHRGKLSGFLRSFSRSSLLDDAEKGGHR
Ga0187871_100532653	3300018042	Peatland	LPPADPTPVLAEVAQHRGKLAGFLHSFSRSSLLDETERAGHR
Ga0187766_111031001	3300018058	Tropical Peatland	AGRWLRPANPTPVLGELSQGRGRLSRFWHSFSRSSLLDEHQGGQR
Ga0206356_114031612	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	WLPPANPTPVLGDVSQRRGRLAGFLHSFSRSSLLDETEGGRAQ
Ga0210407_104379441	3300020579	Soil	PVLSEVSYRRKGLASFLHSFSRSSLLDNAEAGEGR
Ga0210399_105370212	3300020581	Soil	GRWLRPADPTPVLSEISQRRNGFAGFLHSFSRSSLLDNAEAGEGR
Ga0210400_114129502	3300021170	Soil	PVLSEISQRRNGLAGFLHSFSRSSLLDKAEAGEGR
Ga0210388_100555685	3300021181	Soil	DPTPVLAEVSQRRGTLARFAHSFSRSSLLDETEGGKS
Ga0210388_117599691	3300021181	Soil	IAGRCLKPADPTPVLSEISQRRHGFLHSFSRSSLLDQAEAGEGR
Ga0210383_116938271	3300021407	Soil	PADPTPVLGEDPPRRGLAGFLHSFSRSSLLSDDQPGGRR
Ga0210390_106736932	3300021474	Soil	PTPVLGEVPPRRGLAGFLHSFSRSSLLSDDQPGGRR
Ga0210392_101343481	3300021475	Soil	CRRWLPPANPTPVLGDVARRRGRLAGFLHSFSRSSLLDETEGGRAR
Ga0210410_111935862	3300021479	Soil	RWLRPADPTPVLSEVSQRRNGFAGFLHSFSRSSLLDQAEAGEGR
Ga0213853_108333161	3300021861	Watersheds	GYWLPPADPTPVLADVSQHRGKLAGFLHSFSRGSLLDETEGGQAR
Ga0247691_10377541	3300024222	Soil	WLPPANPTPVLGDVSRRRGRLAGFLHSFSRSSLLDETEGGRADDR
Ga0247670_10429551	3300024283	Soil	RIAGRWLPPANPTPVLSDVSQRRGRLAGFLHSFSRSSLLDETEGGRAR
Ga0207685_105359562	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	AGHWLPPADPTPVLSDASQRRGRLAGFLHSFSRSSLVDETKGGDAR
Ga0207693_109941632	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	AGHWLPPADPTPVLSDASQRRGRLAGFLHSFSRSSLVDETKGRDAR
Ga0207665_108035622	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	LRPADPTPVLGEVSQRGRLGGFLHSFSRSSLLDETDRSQAR
Ga0207641_119081521	3300026088	Switchgrass Rhizosphere	AGRWLPPANPTPVLGDVSQHRGRVASFLHSFSRSSLIDETKGGDAR
Ga0257159_10688902	3300026494	Soil	RPADPTPVLSDVSQHRGRVAGFLHSFSRSSLVDETKGGDAR
Ga0257157_10438002	3300026496	Soil	GRWLRPADPTPVLSEISQRRNGLAGFLHSFSRSSLLDNAEAGERR
Ga0208043_10070701	3300027570	Peatlands Soil	PADPTPVLAEVSQQRGKVSGFLHSFSRSSLLDETEGGKP
Ga0209380_100371831	3300027889	Soil	TPVLAEVSQRRSALARFVHSFSRSSLLDETEGGKS
Ga0209067_106839852	3300027898	Watersheds	IAGRWLRPADPTPVLAEVSQRRGKVTGFLHSFSRSSLLDETEGGKP
Ga0308309_116668522	3300028906	Soil	LPPADPTPVLAEVAQYRGKLSAFLHSFSRSSLLDETERAGHR
Ga0308309_117212942	3300028906	Soil	DPTPVLAEVSQRRSALARFVHSFSRSSLLDETEGGKS
Ga0311339_108100981	3300029999	Palsa	AGRWLPPAGPTPVLAEVGRDRGRLAGFVHSFSRSSLLDETERRSAR
Ga0311339_109346992	3300029999	Palsa	AGHWLPPADPTPVLAEVAQYRGKLSGFLHSFSRSSLLDETERAGHR
Ga0311355_105342791	3300030580	Palsa	TPVLAEVGRDRGRLAGFVHSFSRSSLLDETERRSAR
Ga0310038_104969241	3300030707	Peatlands Soil	WLRPADPTPVLSEISQRRNGFAGFLHSFSRSSLLDKAEAGERR
Ga0265760_102885761	3300031090	Soil	GRWLRPADPTPVLAEVSQQRGTLARFAHSFSRSSLLDETEGGKP
Ga0307500_100488492	3300031198	Soil	NPTPVLGDVSRRRGRLAGFLHSFSRSSLLDETEGGRADDR
Ga0308194_100422451	3300031421	Soil	PTPVLGDVSRRRGRLAGFLHSFSRSSLLDETEGGRVR
Ga0318516_100754121	3300031543	Soil	LRPADPTPVLADISRRRSGLAGFLHAFSRSSLVDGAEAGDPR
Ga0318516_105335202	3300031543	Soil	PADPTPVLSDVSQHRGKLAGFLHSFSRSSLIDETKRGDAR
Ga0318573_102345761	3300031564	Soil	PVLSEISQRRNGFAGFLHSFSRSSLLDKGEAGERR
Ga0318542_104386732	3300031668	Soil	GHWLKPADPTPVLSDVSQHRGKLAGFLHSFSRSSLIDETKRGDAR
Ga0318560_102997082	3300031682	Soil	KPADPTPVLSDVSQHRGKLAGFLHSFSRSSLIDETKRGDAR
Ga0318496_108083001	3300031713	Soil	PVLSDVSQHRGKLAGFLHSFSRSSLIDETKRGDAR
Ga0318500_101004742	3300031724	Soil	GRWLRPADPTPVLSDVSQRRGRVAGFLHSFSRSSLVDENKRGDAR
Ga0307475_111491272	3300031754	Hardwood Forest Soil	HWLKPADPTPVLAEISQHRGGLAGFLHSFSRSSLLDKGEAGVNR
Ga0318552_105929902	3300031782	Soil	IAGRWLRPADPTPVLSDVSQRRGRVAGFLHSFSRSSLIDETKRGDAR
Ga0318495_102284662	3300031860	Soil	PTPVLSDVSQRRGRVAGFLHSFSRSSLVDENKRGDAR
Ga0306923_109738812	3300031910	Soil	ADPTPVLADISQHRGWFAGFLHSFSRSSLLDKGEAGEA
Ga0306921_117236511	3300031912	Soil	AGHWLKPADPTPVLSDVSQHRGKLAGFLHSFSRSSLIDETKRGDAR
Ga0310885_100896253	3300031943	Soil	NPTPVLGDVSQHRGRVAGFLHSFSRSSLIDETKGGDAR
Ga0310913_101597041	3300031945	Soil	IAGRWLRPADPTPVLGDVSQRRGRLAGFLHSFSRSSLIDETKRGDAR
Ga0318570_105873642	3300032054	Soil	PTPVLSEISQRRNGFAGFLHSFSRSSLLDKGEAGERR
Ga0318525_105008131	3300032089	Soil	DPTPVLSDISQRRGRVAGFLHSFSRSSLIDETKAGDAR
Ga0335085_101032381	3300032770	Soil	PTPVLSDISQRRGRVAGFLHSFSRSSLLDETEGGRAR
Ga0335083_113651291	3300032954	Soil	RWLRPADPTPVFGEAGQRGRLGSFLHSFSRSSLLDETERSQAR
Ga0310914_117365451	3300033289	Soil	RWLRPADPTPVLSEISQRRSGFAGFLHSFSRSSLLDKAEAGERR
Ga0318519_105039842	3300033290	Soil	PTPVLSDVSQHRGKLAGFLHSFSRSSLIDETKRGDAR
Ga0334827_126080_679_816	3300034065	Soil	GHWLRPADPTPVLAEVLQHRGKLAGFVHSFSRNSLLDETEGGQLR

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.21
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.21
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099743

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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