Metagenome / Metatranscriptome Family F099747

Basic Information
Family ID	F099747
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	57 residues
Representative Sequence	VTGSERTWTLGGSRWSVLTVLALLGTAVSLIGGMWVEAAVFLVATVVLAAVALRAGRR
Number of Associated Samples	95
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.70 %
% of genes near scaffold ends (potentially truncated)	33.98 %
% of genes from short scaffolds (< 2000 bps)	83.50 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (77.670 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (21.359 % of family members)
Environment Ontology (ENVO)	Unclassified (37.864 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.602 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 70.69% β-sheet: 0.00% Coil/Unstructured: 29.31%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF01855	POR_N	21.36
PF09922	DUF2154	10.68
PF02775	TPP_enzyme_C	9.71
PF08044	DUF1707	0.97
PF12697	Abhydrolase_6	0.97
PF10947	DUF2628	0.97
PF09413	DUF2007	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0674	Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit	Energy production and conversion [C]	21.36
COG4231	TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit	Energy production and conversion [C]	21.36

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.67 %
Unclassified	root	N/A	22.33 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.67 %
Unclassified	root	N/A	22.33 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.67 %
Unclassified	root	N/A	22.33 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	33.01 %
Unclassified	root	N/A	22.33 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	33.01 %
Unclassified	root	N/A	22.33 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	29.13 %
Unclassified	root	N/A	22.33 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	23.30 %
Unclassified	root	N/A	22.33 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.94 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	23.30 %
Unclassified	root	N/A	22.33 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.94 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	23.30 %
Unclassified	root	N/A	22.33 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.94 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	23.30 %
Unclassified	root	N/A	22.33 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.94 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	23.30 %
Unclassified	root	N/A	22.33 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.94 %
Streptomyces sp. F-1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. F-1	0.97 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664021\|ICCgaii200_c0927225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2158	Open in IMG/M
2228664022\|INPgaii200_c1189277	All Organisms → cellular organisms → Bacteria	1162	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0783816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	542	Open in IMG/M
3300000891\|JGI10214J12806_11137641	All Organisms → cellular organisms → Bacteria	1422	Open in IMG/M
3300000955\|JGI1027J12803_100994599	All Organisms → cellular organisms → Bacteria	946	Open in IMG/M
3300000956\|JGI10216J12902_106687736	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300004479\|Ga0062595_100874700	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300005093\|Ga0062594_101503540	Not Available	691	Open in IMG/M
3300005171\|Ga0066677_10128370	All Organisms → cellular organisms → Bacteria	1371	Open in IMG/M
3300005172\|Ga0066683_10428829	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300005176\|Ga0066679_10807495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	598	Open in IMG/M
3300005179\|Ga0066684_10024249	All Organisms → cellular organisms → Bacteria	3208	Open in IMG/M
3300005180\|Ga0066685_10705226	Not Available	692	Open in IMG/M
3300005181\|Ga0066678_10485102	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300005186\|Ga0066676_10099288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1764	Open in IMG/M
3300005187\|Ga0066675_10135184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1676	Open in IMG/M
3300005336\|Ga0070680_101480212	Not Available	588	Open in IMG/M
3300005338\|Ga0068868_100040806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3613	Open in IMG/M
3300005338\|Ga0068868_100970391	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300005345\|Ga0070692_10254490	All Organisms → cellular organisms → Bacteria	1053	Open in IMG/M
3300005347\|Ga0070668_100084889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2488	Open in IMG/M
3300005354\|Ga0070675_100586026	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300005366\|Ga0070659_100981640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	741	Open in IMG/M
3300005406\|Ga0070703_10053857	All Organisms → cellular organisms → Bacteria	1295	Open in IMG/M
3300005444\|Ga0070694_100043313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3009	Open in IMG/M
3300005444\|Ga0070694_101967259	Not Available	500	Open in IMG/M
3300005445\|Ga0070708_100034856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4382	Open in IMG/M
3300005445\|Ga0070708_100304912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1500	Open in IMG/M
3300005445\|Ga0070708_100424715	All Organisms → cellular organisms → Bacteria	1254	Open in IMG/M
3300005467\|Ga0070706_100192884	All Organisms → cellular organisms → Bacteria	1903	Open in IMG/M
3300005467\|Ga0070706_100309510	Not Available	1473	Open in IMG/M
3300005471\|Ga0070698_102179606	Not Available	508	Open in IMG/M
3300005536\|Ga0070697_101138053	Not Available	695	Open in IMG/M
3300005540\|Ga0066697_10426163	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300005543\|Ga0070672_100653851	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300005547\|Ga0070693_100195044	All Organisms → cellular organisms → Bacteria	1312	Open in IMG/M
3300005558\|Ga0066698_10561855	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300005843\|Ga0068860_100340335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1475	Open in IMG/M
3300006046\|Ga0066652_101535229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	616	Open in IMG/M
3300006173\|Ga0070716_100491243	Not Available	903	Open in IMG/M
3300006173\|Ga0070716_101609969	Not Available	533	Open in IMG/M
3300006237\|Ga0097621_100678847	All Organisms → cellular organisms → Bacteria	947	Open in IMG/M
3300006755\|Ga0079222_10019428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2691	Open in IMG/M
3300006797\|Ga0066659_10797497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	781	Open in IMG/M
3300006804\|Ga0079221_11071684	Not Available	613	Open in IMG/M
3300009098\|Ga0105245_10238726	All Organisms → cellular organisms → Bacteria	1761	Open in IMG/M
3300009148\|Ga0105243_10092112	All Organisms → cellular organisms → Bacteria	2498	Open in IMG/M
3300009162\|Ga0075423_10170006	All Organisms → cellular organisms → Bacteria	2288	Open in IMG/M
3300010321\|Ga0134067_10229639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	692	Open in IMG/M
3300010396\|Ga0134126_10442613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1504	Open in IMG/M
3300012199\|Ga0137383_10064617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2630	Open in IMG/M
3300013306\|Ga0163162_10615880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1211	Open in IMG/M
3300014154\|Ga0134075_10416599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	594	Open in IMG/M
3300017654\|Ga0134069_1074418	All Organisms → cellular organisms → Bacteria	1089	Open in IMG/M
3300018061\|Ga0184619_10020337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2724	Open in IMG/M
3300018071\|Ga0184618_10439598	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300018433\|Ga0066667_10458101	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300019279\|Ga0184642_1141464	All Organisms → cellular organisms → Bacteria	1080	Open in IMG/M
3300019361\|Ga0173482_10232522	Not Available	774	Open in IMG/M
3300019890\|Ga0193728_1366907	Not Available	510	Open in IMG/M
3300022694\|Ga0222623_10006493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4148	Open in IMG/M
3300022756\|Ga0222622_10173397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1411	Open in IMG/M
3300024288\|Ga0179589_10412936	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300025906\|Ga0207699_11034371	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300025906\|Ga0207699_11160096	Not Available	572	Open in IMG/M
3300025910\|Ga0207684_10052372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3464	Open in IMG/M
3300025910\|Ga0207684_10086198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2674	Open in IMG/M
3300025922\|Ga0207646_10708228	All Organisms → cellular organisms → Bacteria	900	Open in IMG/M
3300025937\|Ga0207669_10150227	All Organisms → cellular organisms → Bacteria	1631	Open in IMG/M
3300025945\|Ga0207679_10537941	All Organisms → cellular organisms → Bacteria	1047	Open in IMG/M
3300025972\|Ga0207668_10887283	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300026277\|Ga0209350_1046756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1260	Open in IMG/M
3300026312\|Ga0209153_1001640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7634	Open in IMG/M
3300026326\|Ga0209801_1010153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4899	Open in IMG/M
3300026327\|Ga0209266_1216974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	664	Open in IMG/M
3300026528\|Ga0209378_1267897	Not Available	543	Open in IMG/M
3300026550\|Ga0209474_10083419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. F-1	2191	Open in IMG/M
3300027695\|Ga0209966_1171861	Not Available	508	Open in IMG/M
3300027787\|Ga0209074_10304123	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300028381\|Ga0268264_10708195	Not Available	1000	Open in IMG/M
3300028711\|Ga0307293_10143232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	761	Open in IMG/M
3300028714\|Ga0307309_10121543	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300028715\|Ga0307313_10297831	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300028716\|Ga0307311_10227080	Not Available	551	Open in IMG/M
3300028778\|Ga0307288_10138561	All Organisms → cellular organisms → Bacteria	909	Open in IMG/M
3300028787\|Ga0307323_10085643	All Organisms → cellular organisms → Bacteria	1125	Open in IMG/M
3300028793\|Ga0307299_10135371	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300028807\|Ga0307305_10390742	Not Available	629	Open in IMG/M
3300028810\|Ga0307294_10098861	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
3300028811\|Ga0307292_10374099	Not Available	603	Open in IMG/M
3300028828\|Ga0307312_10125737	All Organisms → cellular organisms → Bacteria	1610	Open in IMG/M
3300028878\|Ga0307278_10134768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1108	Open in IMG/M
3300028884\|Ga0307308_10620690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	518	Open in IMG/M
3300030904\|Ga0308198_1051554	Not Available	639	Open in IMG/M
3300030905\|Ga0308200_1157674	Not Available	529	Open in IMG/M
3300030990\|Ga0308178_1021519	All Organisms → cellular organisms → Bacteria	1028	Open in IMG/M
3300031094\|Ga0308199_1050825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	810	Open in IMG/M
3300031892\|Ga0310893_10547464	Not Available	524	Open in IMG/M
3300032012\|Ga0310902_10423573	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300032013\|Ga0310906_10175887	All Organisms → cellular organisms → Bacteria	1276	Open in IMG/M
3300032205\|Ga0307472_100264014	All Organisms → cellular organisms → Bacteria	1359	Open in IMG/M
3300033412\|Ga0310810_10574344	All Organisms → cellular organisms → Bacteria	1093	Open in IMG/M
3300034660\|Ga0314781_072291	Not Available	654	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.50%
Host-Associated	Host-Associated	16.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.64%
Plants	Host-Associated → Plants	16.50%
Aquatic	Environmental → Aquatic	4.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.71%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.83%
Sediment	Environmental → Aquatic → Sediment	3.88%
Freshwater	Environmental → Aquatic → Freshwater	0.97%
Roots	Host-Associated → Plants → Roots	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.25%
Loam	Environmental → Terrestrial → Soil → Loam	20.39%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.91%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.97%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.24%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	23.30%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	19.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.88%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.91%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.97%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.97%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	21.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	18.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.94%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.97%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.97%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.97%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.97%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.97%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027695	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)	Host-Associated	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030904	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_202 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300034660	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICCgaii200_09272254	2228664021	Soil	VTGPERTTWTLGGSRWSVLTVLALLGTAVSLIGGMWVEAAVFLVATVVLAAVALRAGRR
INPgaii200_11892772	2228664022	Soil	VTGPERTWTLGGSRWSVLTVLALLGTAVSLIGGMWVEAAVFLVATVVLAAVALRAGRR
ICChiseqgaiiDRAFT_07838161	3300000033	Soil	GDAVTGSERTWTLGGSRWSVLTVLALLGTAVSLIGRMWVEAAVXXVATVVLAAVALRAGRR*
JGI10214J12806_111376412	3300000891	Soil	VTESERTWGFGGSRWSVLTVLALAGALVSVIGRNWVEAALFFVAAVVLAAVALRAGRR*
JGI1027J12803_1009945993	3300000955	Soil	VTGPERTTWTLGGSRWSVLTVLALLGTAVSLIGGMWVEAAVFLVATVVLAAVALRAGRR*
JGI10216J12902_1066877362	3300000956	Soil	VTESERSWTLGGSRWSVLTVLALAGALVSLVGGMWAEAALFLVAAGVLAVVALRAGRR*
Ga0062595_1008747001	3300004479	Soil	VTESERTWGFGGSRRSVLTVLALAGALVSVIGRNWVEAALFFVAAVVLAAVALRAGRR*
Ga0062594_1015035403	3300005093	Soil	QRTWGFGGSRWSVLTVLALAGALVSVIGRNWVEAALFFVTAVVLAAVALRAGRR*
Ga0066677_101283704	3300005171	Soil	VSATDRAWSLGGSRWSVLGVLALIGAAVSVIGGMWLEAALFFAAAFGLAVVARRTARR*
Ga0066683_104288292	3300005172	Soil	VTGSERAWTLGGSRWSVLTVLALVGTAVSVIGGMWLEAALFLAAAVVLAVVALRA
Ga0066679_108074951	3300005176	Soil	DRGNAVSGTQRAWSLGGSRWSVLFVIALVGAGVSIIGGMWIQAALFFSAAVVLAAVALRVARR*
Ga0066684_100242495	3300005179	Soil	VSGTQRAWSLGGSRWSVLFVIALVGAGVSIIGGMWIQAALFFSAAVVLAAVALRVARR*
Ga0066685_107052262	3300005180	Soil	VTGSERAWTLGGSRWSVLTVLALVGTAVSVIGGMWLEAALFLAAAVVLAVVALRAGRR*
Ga0066678_104851021	3300005181	Soil	VTGSERAWTLGGSRWSVLTALALVGTAVSVIGGMWLEAALFLAAAVVLAVVALRAGRR*
Ga0066676_100992882	3300005186	Soil	VSESEPIWPLGSRWSVLTVLALLGTAVSLIGRMWLEAAVFLAAAVVLAVVASRAGRR*
Ga0066675_101351842	3300005187	Soil	VTGSEPIWPFGSRWSVLTVLALLGTAVSLIGGMWVEAAVFFVATFVLAAVALRAGRR*
Ga0070680_1014802122	3300005336	Corn Rhizosphere	VTESQRTWGFGGSRWSVLTVLALAGALVSVIGRNWVEAALFFVTAVVLAAVALRAGRR*
Ga0068868_1000408063	3300005338	Miscanthus Rhizosphere	VTGPERTWTLGGSRWSVLSVLALLGTAVSLIGGMWVEAAVFLVATLVLAAVALRAGRR*
Ga0068868_1009703912	3300005338	Miscanthus Rhizosphere	VTESQRTWGFGGSRWSVLTVLALAGALVSVIGRNWVEAALFFVAAVVLAAVALRAGRR*
Ga0070692_102544902	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	VTGSERTWTLGGSRWSVLSVLALLGTAVSLIGGMWVEAAVFLVATVVLAAVALRAGRR*
Ga0070668_1000848895	3300005347	Switchgrass Rhizosphere	VTGPERTWTLGGSRWSVLSVLALLGTAVSLIGGMWVEAAVFLVATVVLAAVALRAGRR*
Ga0070675_1005860261	3300005354	Miscanthus Rhizosphere	VTGPERTWTLGGSRWSVLSVLAFLGTAVSLIGGMWVEAAVFLVATLVLAAVALRAGRR
Ga0070659_1009816404	3300005366	Corn Rhizosphere	GTRGNRGDAVTGPERTTWTIGGSRWSVLTVLALLGTAVSLIGGMWVEAAVFLVATVVLAAVALRAGRR*
Ga0070703_100538573	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	VTGPERTTWTIGGSRWSVLTVLALLGTAVSLIGGMWVEAAVFLVATVVLAAVALRAGRR*
Ga0070694_1000433132	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	VTGPERTWTLGGSRWSVLSVLALLGTAVSLIGGMWAEAAVFLVATLVLAAVALRAGRR*
Ga0070694_1019672591	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	AFSGQRGTRGNRGDAVTGPERTTWTIGGSRWSVLTVLALLGTAVSLIGGMWVEAAVFLVATVVLAAVALRAGRR*
Ga0070708_1000348569	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VSGTERVWSFGGSRWSVLAVLALAGVLVSAIGGMWLEAALFLVAAVVLAAVALRTARR*
Ga0070708_1003049122	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VTGSERTWTLGGSRWSVLSVLALLGTAVSLIGGMWVEAAVFLVATLVLAAVALRAGRR*
Ga0070708_1004247151	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VTGSERAWTLGGSRWSVLTVLAVVGVAVSLIGGMWLEAAVFLAAAVVLAVVALRAARR*
Ga0070706_1001928844	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VSGTERAWSFGGSRWSVLAVLALAGVLVSAIGGMWLEAALFLVAAVVLAAVALRTARR*
Ga0070706_1003095102	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VTGSERAWTLGGSRWSVLTALAVVGVAVSLIGGMWLEAAVFLAAAVVLAVVALRAARR*
Ga0070698_1021796061	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	RGTRGNRGDAVTGSERAWTLGGSRWSVLTALAVVGVAVSLIGGTWLEAAVFLAAAVVLAVVALRAARR*
Ga0070697_1011380531	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VSRGRGTRGDRGDAVTGSERAWTLGGSRWSVLTVLAVVGVAVSLIGGMWLEAAVFLAAAVVLAVVALRAARR*
Ga0066697_104261631	3300005540	Soil	ERAWTLGGSRWSVLTVLALVGTAVSVIGGMWLEAALFLAAAVVLAVVALRAGRR*
Ga0070672_1006538512	3300005543	Miscanthus Rhizosphere	VTESQRTWAFGGSRWSVLTVLALAGALVSVIGRNWVEAALFFVTAVVLAAVALRAGRR*
Ga0070693_1001950442	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	VTGSQRTWGFGGSRWSVLTVLALAGALVSVIGRNWVEAALFFVTAVVLAAVALRAGRR*
Ga0066698_105618551	3300005558	Soil	WTLGGSRWSVLTVLALVGTAVSVIGGMWLEAALFLAAAVVLAVVALRAGRR*
Ga0068860_1003403351	3300005843	Switchgrass Rhizosphere	PERTWTLGGSRWSVLSVLALLGTAVSLIGGMWVEAAVFLVATVVLAAVALRAGRR*
Ga0066652_1015352294	3300006046	Soil	LGGSRWSVLTVLAFLGVAVSLIGRMWLESAVFLAAAVVLAVVASRAGRR*
Ga0070716_1004912432	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VTQSERAWGFGGSRWSVLTVLALAGALVSVIGRNWVEAALFFVAAVVLAAVALRAGRR*
Ga0070716_1016099693	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	GFGGSRWSVLTVLALAGALVSVIGRNWVEAALFFVTAVVLAAVALRAGRR*
Ga0097621_1006788472	3300006237	Miscanthus Rhizosphere	VTQSERAWGFGGSRWSVLTVLALAGALVSVIGRNWVEAALFFVTAVVLAAVALRAGRR*
Ga0079222_100194283	3300006755	Agricultural Soil	VTESERTWAFGGSRWSVLTVLALAGALVSVIGRNWVEAALFFVAAVVLAAVALRAGRR*
Ga0066659_107974974	3300006797	Soil	VTGSERAWSLGGSRWSVLFVVALVGAAVSVLGGMWIQGALFFAAAVVLAAVALRATRR*
Ga0079221_110716842	3300006804	Agricultural Soil	VTESERTWAFGGSRWSVLTVLALAGALVSVIGRNWVEAALFFAAAVVLAAVALRAGRR*
Ga0105245_102387262	3300009098	Miscanthus Rhizosphere	VTESQRTWGFGGSRWSVLTVLALAGALVSVIGRNWVEAGLFFVTAVVLAAVALRAGRR*
Ga0105243_100921122	3300009148	Miscanthus Rhizosphere	VTESQRTWGFGGSRWSVLTVLALAGALVSVIGRNWVEAALFFVTAVVLAAVALRVGRR*
Ga0075423_101700066	3300009162	Populus Rhizosphere	FGGSRWSVLTVLALAGALVSVIGRNWVEAALFFVAAVVLAAVALRAGRR*
Ga0134067_102296391	3300010321	Grasslands Soil	GGSRWSVLFVIALVGAGVSIIGGMWIQAALFFSAAVVLAAVALRVARR*
Ga0134126_104426132	3300010396	Terrestrial Soil	VTGPERTWTLGGSRWSVLSVLALLGTDVSLIGGMWVEAAVFLVATLVLAAVALRAGRR*
Ga0137383_100646172	3300012199	Vadose Zone Soil	LPLGSRWSVLTVLALLGTAVSLIGRMWLEAAVFLAAAVVLAVVASRAGRR*
Ga0163162_106158801	3300013306	Switchgrass Rhizosphere	RTTWTIGGSRWSVLTVLALLGTAVSLIGGMWVEAAVFLVATVVLAAVALRAGRR*
Ga0134075_104165991	3300014154	Grasslands Soil	SEPIWPLGSRWSVLTVLALLGTAVSLIGRMWLEAAVFLAAAVVLAVVASRAGRR*
Ga0134069_10744182	3300017654	Grasslands Soil	VSESEPIWPLGSRWSVLTVLALLGTAVSLIGRMWLEAAVFLAAAVVLAVVASRAGRR
Ga0184619_100203374	3300018061	Groundwater Sediment	VTGSERTSTLGGSRWSVLSVLALLGTAVSLIGGMWVEAAVFLVATLVLGAVALRAGRR
Ga0184618_104395981	3300018071	Groundwater Sediment	VNGSDRASTLGGSRWSVLTVLALLGVAVSLIGRMWLEAAVFLAAAVVLSVVALRAGRR
Ga0066667_104581011	3300018433	Grasslands Soil	VTGSERAWTLGGSRWSVLTVLALVGTAVSVIGGMWLEAALFLAAAVVLAVVAL
Ga0184642_11414642	3300019279	Groundwater Sediment	VNGSDRASTLGGSRWSVLTVLALLGAAVSLIGRMWLEAAVFLAAAVVLAVVALRAGRR
Ga0173482_102325223	3300019361	Soil	VTESERTWGFGGSRWSVLTVLALAGALVSVIGRNWVEAALFFVAAVVLAAVALRAGRR
Ga0193728_13669073	3300019890	Soil	RGNRGDAVTGSERTSTLGGSRWSVLSVLALLGTAVSLIGGMWVEAAVFLVATVVLAAVALRAGRR
Ga0222623_100064938	3300022694	Groundwater Sediment	VTGPERTWTLGGSRWSVLSVLALLGAAVSLIGGMWVEAAVFLVATVVLAAVALRAGRR
Ga0222622_101733972	3300022756	Groundwater Sediment	VTGSDRTWSLSGSRWSVLTVLALLGVAVSLIGRMWLEAAVFLAAAVVLAVVALRAGRR
Ga0179589_104129362	3300024288	Vadose Zone Soil	VSESEPIWPLGSRWSVLTVLALLGAAVSLIGRMWLEAAVFLAAAVVLAVVASRAGR
Ga0207699_110343711	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VTQSERAWGFGGSRWSVLTVLALAGALVSVIGRNWVEAALFFVAAVVLA
Ga0207699_111600961	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	QRTWGFGGSRWSVLTVLALAGALVSVIGRNWVEAALFFVTAVVLAAVALRAGRR
Ga0207684_100523728	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VTGSERAWTLGGSRWSVLTALAVVGVAVSLIGGMWLEAAVFLAAAVVLAVVALRAARR
Ga0207684_100861983	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VSGTERAWSFGGSRWSVLAVLALAGVLVSAIGGMWLEAALFLVAAVVLAAVALRTARR
Ga0207646_107082282	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VSGTERAWSLGGSRWSVLSVLALVGAAVSVIGGMWLEAALFFAAAVALAVVALRTARR
Ga0207669_101502274	3300025937	Miscanthus Rhizosphere	VTGSERTWTLGGSRWSVLSVLALLGTAVSLIGGMWVEAAVFLVATVVLAAVALRAGRR
Ga0207679_105379413	3300025945	Corn Rhizosphere	VTESQRTWGFGGSRWSVLTVLALAGALVSVIGRNWVEAALFFVAAVVLAAVALRAGRR
Ga0207668_108872831	3300025972	Switchgrass Rhizosphere	VTGPERTWTLGGSRWSVLSVLALLGTAVSLIGGMWVEAAVFLVATVVLAAVALRAGRR
Ga0209350_10467564	3300026277	Grasslands Soil	VSESEPIWPLGSRWSVLTVLALLGAAVSLIGRMWLEAAVFLAAAVVLAVVASRAGRR
Ga0209153_10016408	3300026312	Soil	VSGTQRAWSLGGSRWSVLFVIALVGAGVSIIGGMWIQAALFFSAAVVLAAVALRVARR
Ga0209801_10101537	3300026326	Soil	VTGSERAWTLGGSRWSVLTALALVGTAVSVIGGMWLEAALFLAAAVVLAVVALRAGRR
Ga0209266_12169741	3300026327	Soil	GDAVSESEPIWPLGSRWSVLTVLALLGTAVSLIGRMWLEAAVFLAAAVVLAVVASRAGRR
Ga0209378_12678972	3300026528	Soil	VTGSERAWTLGGSRWSVLTVLALVGTAVSVIGGMWLEAALFLAAAVVLAVVALRAGRR
Ga0209474_100834191	3300026550	Soil	VSGTQRAWSLGGSRWSVLFVIALVGAGVSIIGGMWIQAALFFSAAVVLAAV
Ga0209966_11718612	3300027695	Arabidopsis Thaliana Rhizosphere	VTGSERTWTLGGSRWSVLTVLALLGTAVSLIGRMWVEAAVFFVATVVLAAVALRAGRR
Ga0209074_103041232	3300027787	Agricultural Soil	VTESERTWAFGGSRWSVLTVLALAGALVSVIGRNWVEAALFFVAAVVLAAVALRAGR
Ga0268264_107081954	3300028381	Switchgrass Rhizosphere	VTGPERTTWTIGGSRWSVLTVLALLGTAVSLIGGMWVEAAVFLVATLVLAAVALRAGRR
Ga0307293_101432321	3300028711	Soil	RSAFSGQRGTRGNRGDAVTGPERTTWTLGGSRWSVLTVLALLGTAVSLIGGMWIEAAVFLVATVVLAAVALRAGRR
Ga0307309_101215431	3300028714	Soil	VTGSERTWTLGGSRWSVLSVLALLGTAVSLIGGMWVEAAVFLVATVVLAAVALRA
Ga0307313_102978312	3300028715	Soil	VIGSERTWTLGGSRWSVLSVLALLGTAVSLIGGMWVEAAVFLVATVVLAAVALRAGRR
Ga0307311_102270802	3300028716	Soil	VTGSDRTWTLVGSRWSVLTVLALLGVAVSLMGRMWLEAAVFLAAAVVLAVVALRAGRR
Ga0307288_101385612	3300028778	Soil	VIGSERTWTLGGSRWSVLSVLALLGTAVSLIGGMWVVLAAVALR
Ga0307323_100856432	3300028787	Soil	VTGSDRTWSLVGSRWSVLTVLALLGVAVSLMGRMWLEAAVFLAAAVVLAVVALRAGRR
Ga0307299_101353712	3300028793	Soil	VTGSDRTWSLSGSRWSVLTVLALLGVAVSLIGRMWLEAAVFLAAAVVLAVVAVRAGRR
Ga0307305_103907422	3300028807	Soil	VTGPERTWTLGGSRWSVLPVLALLGAAVSLIGGMWVEAAVFLVATVVLAAVALRAGRR
Ga0307294_100988611	3300028810	Soil	VTGSERTWTLGGSRWSVLSVLALLGTAVSLIGGMWVEAAVFLVATVVLA
Ga0307292_103740992	3300028811	Soil	VTGSERTWTLGGSRWSVLTVLALLGAAVSLIGGMSVEAAVFLVATVVLAAVALRAGRR
Ga0307312_101257373	3300028828	Soil	VTGPERTTWTLGGSRWSVLTVLALLGTAVSLIGGMWIEAAVFLVATVVLAAVALRAGRR
Ga0307278_101347684	3300028878	Soil	VTGPERTTWTLGGSRWSVLTVLALLGTAVSLIGGMRIEAAVFLVATVVLAAVALRAGRR
Ga0307308_106206901	3300028884	Soil	RTTWTLGGSRWSVLTVLALLGTAVSLIGGMWIEAAVFLVATVVLAAVALRAGRR
Ga0308198_10515542	3300030904	Soil	VTGSDRTWTLGGSRWSVLTVLALLGAAVSLIGRMWLEAAVFLAAAVVLAVVALRAGRR
Ga0308200_11576742	3300030905	Soil	VTGPERTTWTLGGSRWSVLSVLALLGTAVSLIGGMWVEAAVFLVATVVLAAVALRAGRR
Ga0308178_10215192	3300030990	Soil	VTGSDRTWTLSGSRWSVLTVLALLGVAVSLIGRMWLEAAVFLAAAVVLAVVAVRAGRR
Ga0308199_10508254	3300031094	Soil	VTGSERTWTLGGSRWSVLTVLALLGTAVSLIGGMWVEAAVFLVATVVLAAVALRAGRR
Ga0310893_105474642	3300031892	Soil	VTESQRTWGFGDSRWSVLTVLALAGALVSVIGRNWVEAALFFVTAVVLAAVALRAGRR
Ga0310902_104235734	3300032012	Soil	DAVTESQRTWGFGGSRWSVLTVLALAGALVSVIGRNWVEAALFFVTAVVLAAVALRAGRR
Ga0310906_101758871	3300032013	Soil	VTESQRTWGFGGSRWSVLTVLALAGALVSVIGRNWVEAALFFVTAVVLAAVAL
Ga0307472_1002640142	3300032205	Hardwood Forest Soil	MTESQRTWGFGGSRWSVLTVLALAGALVSVIGRNWVEAALFFVTAVVLAAVALRAGRR
Ga0310810_105743442	3300033412	Soil	VTADRSWTLGGSRWSVLTVLAFLGAAVSLIGGMWVEAAVFFVATVVLAAVALRAGRR
Ga0314781_072291_2_157	3300034660	Soil	WGFGGSRWSVLTVLALAGALVSVIGRNWVEAALFFVTAVVLAAVALRAGRR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099747

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign