Metagenome / Metatranscriptome Family F099804

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099804
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	48 residues
Representative Sequence	MCVSSELPVTVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPDLTFFPR
Number of Associated Samples	78
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.97 %
% of genes near scaffold ends (potentially truncated)	91.26 %
% of genes from short scaffolds (< 2000 bps)	92.23 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.16

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.087 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (33.981 % of family members)
Environment Ontology (ENVO)	Unclassified (36.893 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.631 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.86% β-sheet: 0.00% Coil/Unstructured: 91.14%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.16
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.16
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF04335	VirB8	1.94
PF01765	RRF	0.97
PF12696	TraG-D_C	0.97
PF16793	RepB_primase	0.97
PF00589	Phage_integrase	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG3736	Type IV secretory pathway, component VirB8	Intracellular trafficking, secretion, and vesicular transport [U]	1.94
COG0233	Ribosome recycling factor	Translation, ribosomal structure and biogenesis [J]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.09 %
Unclassified	root	N/A	2.91 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.09 %
Unclassified	root	N/A	2.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.09 %
Unclassified	root	N/A	2.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	95.15 %
Unclassified	root	N/A	2.91 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	35.92 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5.83 %
Unclassified	root	N/A	2.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	35.92 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	5.83 %
Unclassified	root	N/A	2.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	35.92 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.83 %
Unclassified	root	N/A	2.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	35.92 %
Silvibacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium	2.91 %
Unclassified	root	N/A	2.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	35.92 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	2.91 %
Unclassified	root	N/A	2.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001471\|JGI12712J15308_10100031	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	735	Open in IMG/M
3300002245\|JGIcombinedJ26739_100385431	All Organisms → cellular organisms → Bacteria → Acidobacteria	1281	Open in IMG/M
3300002245\|JGIcombinedJ26739_100580592	All Organisms → cellular organisms → Bacteria → Acidobacteria	998	Open in IMG/M
3300002245\|JGIcombinedJ26739_101529669	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	563	Open in IMG/M
3300002907\|JGI25613J43889_10071318	All Organisms → cellular organisms → Bacteria → Acidobacteria	941	Open in IMG/M
3300004082\|Ga0062384_100348157	Not Available	937	Open in IMG/M
3300005537\|Ga0070730_10064235	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2607	Open in IMG/M
3300005591\|Ga0070761_10137972	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1423	Open in IMG/M
3300005591\|Ga0070761_10359276	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	884	Open in IMG/M
3300005610\|Ga0070763_10129495	All Organisms → cellular organisms → Bacteria → Acidobacteria	1300	Open in IMG/M
3300006028\|Ga0070717_10652971	All Organisms → cellular organisms → Bacteria → Acidobacteria	955	Open in IMG/M
3300006031\|Ga0066651_10166745	All Organisms → cellular organisms → Bacteria → Acidobacteria	1159	Open in IMG/M
3300006052\|Ga0075029_100095225	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1781	Open in IMG/M
3300006172\|Ga0075018_10401929	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	697	Open in IMG/M
3300006176\|Ga0070765_100121247	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2294	Open in IMG/M
3300006176\|Ga0070765_100146331	All Organisms → cellular organisms → Bacteria	2102	Open in IMG/M
3300006176\|Ga0070765_100212942	All Organisms → cellular organisms → Bacteria → Acidobacteria	1758	Open in IMG/M
3300006176\|Ga0070765_100315126	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1448	Open in IMG/M
3300006176\|Ga0070765_100736083	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	932	Open in IMG/M
3300006354\|Ga0075021_10649157	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	676	Open in IMG/M
3300006804\|Ga0079221_10029983	All Organisms → cellular organisms → Bacteria → Acidobacteria	2296	Open in IMG/M
3300006893\|Ga0073928_10006884	All Organisms → cellular organisms → Bacteria	15058	Open in IMG/M
3300006893\|Ga0073928_10220623	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1470	Open in IMG/M
3300006893\|Ga0073928_10981874	All Organisms → cellular organisms → Bacteria → Acidobacteria	576	Open in IMG/M
3300007258\|Ga0099793_10254830	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	848	Open in IMG/M
3300009088\|Ga0099830_11566150	All Organisms → cellular organisms → Bacteria → Acidobacteria	549	Open in IMG/M
3300009089\|Ga0099828_10423805	All Organisms → cellular organisms → Bacteria → Acidobacteria	1200	Open in IMG/M
3300009552\|Ga0116138_1105576	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	781	Open in IMG/M
3300009824\|Ga0116219_10583518	All Organisms → cellular organisms → Bacteria → Acidobacteria	615	Open in IMG/M
3300011270\|Ga0137391_10468952	All Organisms → cellular organisms → Bacteria → Acidobacteria	1069	Open in IMG/M
3300011270\|Ga0137391_11004384	All Organisms → cellular organisms → Bacteria → Acidobacteria	679	Open in IMG/M
3300011271\|Ga0137393_10697591	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	869	Open in IMG/M
3300012096\|Ga0137389_10868868	All Organisms → cellular organisms → Bacteria → Acidobacteria	774	Open in IMG/M
3300012096\|Ga0137389_11135523	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	669	Open in IMG/M
3300012189\|Ga0137388_10951965	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	793	Open in IMG/M
3300012202\|Ga0137363_10229911	All Organisms → cellular organisms → Bacteria → Acidobacteria	1500	Open in IMG/M
3300012202\|Ga0137363_10378792	All Organisms → cellular organisms → Bacteria → Acidobacteria	1175	Open in IMG/M
3300012202\|Ga0137363_10569056	All Organisms → cellular organisms → Bacteria → Acidobacteria	955	Open in IMG/M
3300012205\|Ga0137362_10108329	All Organisms → cellular organisms → Bacteria → Acidobacteria	2347	Open in IMG/M
3300012208\|Ga0137376_11596486	All Organisms → cellular organisms → Bacteria → Acidobacteria	543	Open in IMG/M
3300012211\|Ga0137377_10912013	All Organisms → cellular organisms → Bacteria → Acidobacteria	810	Open in IMG/M
3300012361\|Ga0137360_10453862	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1086	Open in IMG/M
3300012361\|Ga0137360_10854598	All Organisms → cellular organisms → Bacteria → Acidobacteria	784	Open in IMG/M
3300012361\|Ga0137360_11697171	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300012363\|Ga0137390_10883668	All Organisms → cellular organisms → Bacteria → Acidobacteria	849	Open in IMG/M
3300012582\|Ga0137358_10770154	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	641	Open in IMG/M
3300012917\|Ga0137395_10307024	All Organisms → cellular organisms → Bacteria → Acidobacteria	1125	Open in IMG/M
3300012917\|Ga0137395_10397697	All Organisms → cellular organisms → Bacteria → Acidobacteria	986	Open in IMG/M
3300012918\|Ga0137396_11081096	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	575	Open in IMG/M
3300012923\|Ga0137359_10741959	All Organisms → cellular organisms → Bacteria → Acidobacteria	853	Open in IMG/M
3300012925\|Ga0137419_10758131	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	791	Open in IMG/M
3300012925\|Ga0137419_11259959	Not Available	620	Open in IMG/M
3300012927\|Ga0137416_11172260	All Organisms → cellular organisms → Bacteria → Acidobacteria	691	Open in IMG/M
3300012944\|Ga0137410_11149762	All Organisms → cellular organisms → Bacteria → Acidobacteria	666	Open in IMG/M
3300014489\|Ga0182018_10324244	All Organisms → cellular organisms → Bacteria → Acidobacteria	833	Open in IMG/M
3300015245\|Ga0137409_11366466	All Organisms → cellular organisms → Bacteria → Acidobacteria	552	Open in IMG/M
3300015264\|Ga0137403_10418634	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1218	Open in IMG/M
3300017926\|Ga0187807_1257800	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300017943\|Ga0187819_10448075	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	739	Open in IMG/M
3300017995\|Ga0187816_10416069	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	599	Open in IMG/M
3300018030\|Ga0187869_10548684	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548	Open in IMG/M
3300020199\|Ga0179592_10345040	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	656	Open in IMG/M
3300020579\|Ga0210407_10350278	All Organisms → cellular organisms → Bacteria → Acidobacteria	1155	Open in IMG/M
3300020580\|Ga0210403_10264728	All Organisms → cellular organisms → Bacteria → Acidobacteria	1410	Open in IMG/M
3300020580\|Ga0210403_10565214	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	921	Open in IMG/M
3300020581\|Ga0210399_10692015	All Organisms → cellular organisms → Bacteria → Acidobacteria	839	Open in IMG/M
3300020582\|Ga0210395_10209083	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1464	Open in IMG/M
3300020583\|Ga0210401_11479872	All Organisms → cellular organisms → Bacteria → Acidobacteria	536	Open in IMG/M
3300021086\|Ga0179596_10064851	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1565	Open in IMG/M
3300021404\|Ga0210389_11173403	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	592	Open in IMG/M
3300021406\|Ga0210386_11550018	All Organisms → cellular organisms → Bacteria → Acidobacteria	551	Open in IMG/M
3300021432\|Ga0210384_10242547	All Organisms → cellular organisms → Bacteria → Acidobacteria	1622	Open in IMG/M
3300021433\|Ga0210391_10337039	All Organisms → cellular organisms → Bacteria → Acidobacteria	1183	Open in IMG/M
3300021477\|Ga0210398_10412254	All Organisms → cellular organisms → Bacteria → Acidobacteria	1101	Open in IMG/M
3300022518\|Ga0224548_1015497	All Organisms → cellular organisms → Bacteria → Acidobacteria	839	Open in IMG/M
3300023030\|Ga0224561_1023551	All Organisms → cellular organisms → Bacteria → Acidobacteria	542	Open in IMG/M
3300024246\|Ga0247680_1054665	All Organisms → cellular organisms → Bacteria → Acidobacteria	581	Open in IMG/M
3300024290\|Ga0247667_1061202	All Organisms → cellular organisms → Bacteria → Acidobacteria	696	Open in IMG/M
3300024330\|Ga0137417_1460064	All Organisms → cellular organisms → Bacteria → Acidobacteria	1247	Open in IMG/M
3300026555\|Ga0179593_1051983	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1272	Open in IMG/M
3300027698\|Ga0209446_1043321	All Organisms → cellular organisms → Bacteria → Acidobacteria	1135	Open in IMG/M
3300027729\|Ga0209248_10029789	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	1701	Open in IMG/M
3300027729\|Ga0209248_10053159	All Organisms → cellular organisms → Bacteria → Acidobacteria	1241	Open in IMG/M
3300027854\|Ga0209517_10527778	All Organisms → cellular organisms → Bacteria → Acidobacteria	638	Open in IMG/M
3300027855\|Ga0209693_10344781	Not Available	723	Open in IMG/M
3300027898\|Ga0209067_10366583	All Organisms → cellular organisms → Bacteria → Acidobacteria	802	Open in IMG/M
3300027903\|Ga0209488_10701065	All Organisms → cellular organisms → Bacteria → Acidobacteria	725	Open in IMG/M
3300028906\|Ga0308309_10192151	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1676	Open in IMG/M
3300028906\|Ga0308309_10291885	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1376	Open in IMG/M
3300028906\|Ga0308309_10521899	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1028	Open in IMG/M
3300028906\|Ga0308309_10539495	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1010	Open in IMG/M
3300028906\|Ga0308309_10588122	All Organisms → cellular organisms → Bacteria → Acidobacteria	966	Open in IMG/M
3300030007\|Ga0311338_10065282	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	4732	Open in IMG/M
3300030399\|Ga0311353_10023004	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	6808	Open in IMG/M
3300030760\|Ga0265762_1099944	All Organisms → cellular organisms → Bacteria → Acidobacteria	642	Open in IMG/M
3300031234\|Ga0302325_11797324	All Organisms → cellular organisms → Bacteria → Acidobacteria	768	Open in IMG/M
3300031236\|Ga0302324_102588584	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	617	Open in IMG/M
3300031344\|Ga0265316_11004063	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	581	Open in IMG/M
3300031708\|Ga0310686_102513875	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300031708\|Ga0310686_110309900	All Organisms → cellular organisms → Bacteria → Acidobacteria	640	Open in IMG/M
3300032895\|Ga0335074_10974278	All Organisms → cellular organisms → Bacteria → Acidobacteria	753	Open in IMG/M
3300032898\|Ga0335072_10601741	All Organisms → cellular organisms → Bacteria → Acidobacteria	1105	Open in IMG/M
3300032898\|Ga0335072_11014781	All Organisms → cellular organisms → Bacteria → Acidobacteria	760	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.03%
Host-Associated	Host-Associated	0.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.50%
Aquatic	Environmental → Aquatic	15.53%
Plants	Host-Associated → Plants	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.64%
Freshwater	Environmental → Aquatic → Freshwater	8.74%
Peat	Environmental → Terrestrial → Peat	4.85%
Sediment	Environmental → Aquatic → Sediment	3.88%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.31%
Loam	Environmental → Terrestrial → Soil → Loam	18.45%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.88%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.62%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.88%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.91%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	2.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.97%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.97%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	33.98%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	13.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.62%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.88%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.88%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.88%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.91%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	2.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.91%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.97%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.97%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.97%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009552	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300022518	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 20-24	Environmental	Open in IMG/M
3300023030	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU2	Environmental	Open in IMG/M
3300024246	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK21	Environmental	Open in IMG/M
3300024290	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031344	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12712J15308_101000313	3300001471	Forest Soil	MCASSELPVTVEKTAGTNYRAAGRERPHELFGRLQAEKVGA
JGIcombinedJ26739_1003854312	3300002245	Forest Soil	MCASSVFPVTVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPDLVFSPR*
JGIcombinedJ26739_1005805921	3300002245	Forest Soil	TIYRAAGRERPHELFGRLKAEKVGSLPPDLVFSPR*
JGIcombinedJ26739_1015296693	3300002245	Forest Soil	MRVSIELPVTAEKNTGTIQRAAGRERPHELFGRLKAEKVGSLPPDLTFFP
JGI25613J43889_100713182	3300002907	Grasslands Soil	MSFSELPATVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPVLVFFPR*
Ga0062384_1003481572	3300004082	Bog Forest Soil	VTVEKTAGTIYRAAARERPHELFGRLKTEKVGSLPPVFVV*
Ga0070730_100642351	3300005537	Surface Soil	VICLSSELPVTVEKKLGKNYRAGGRERPHKLFGRLKAEKVGSLPPDLTFFSTVTFPF
Ga0070761_101379723	3300005591	Soil	MCVSSELPVTVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPDLTFFPR*
Ga0070761_103592761	3300005591	Soil	MCASSELPVTVEKTADTIYRAAGRERPHELFGRLKAEKVGSLPP
Ga0070763_101294952	3300005610	Soil	MCASSELPVTVEKTAGTAYRAAGRERPHELFGRLKAEKVGSLPPDLTFFPR*
Ga0070717_106529713	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MCVFSELPVTVEKTVGTIYRAAGRERSHELFGRLKAEKVGSLP
Ga0066651_101667452	3300006031	Soil	CSETLLHTVEKTAGTVICAGGRVRPHELFGRLKAEKVGSHPPDLTFFPR*
Ga0075029_1000952253	3300006052	Watersheds	MCVTSEVPVTVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPDDVFSTVTFAFPGFV
Ga0075018_104019291	3300006172	Watersheds	MCVSSELSVTVEKTCGTIYRAGGRERPHELFGRLK
Ga0070765_1001212473	3300006176	Soil	VIWFSSEIPVTVEKTAGTIYRAAGRERTHELFGRLKAEKVGSLPPVLVFVPR*
Ga0070765_1001463311	3300006176	Soil	VSFLEAPVTVEKAAGTIYRAAGRERPLELFGRLKAEKVGSLPPDLTFFPR
Ga0070765_1002129423	3300006176	Soil	MCVSSELPVTVEKTAGTIHRAAGRERPHELFGRLKAEKVGSLPPDLTFFPR*
Ga0070765_1003151263	3300006176	Soil	MCASFVFPVTVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPP
Ga0070765_1007360833	3300006176	Soil	VEKKAGTNYRAGGRERPHELFGRLKAEKVGSLPPDL
Ga0075021_106491573	3300006354	Watersheds	MCVSSELSVTVEKTCGTIYRAGGRERPHELFGRLKAEKVGSLPP
Ga0079221_100299832	3300006804	Agricultural Soil	VEKTVGTTYRAGGRERPHELFGRLKAEKVGSLPPVLVFFPR*
Ga0073928_100068844	3300006893	Iron-Sulfur Acid Spring	VEKTAGTIDRAAGRERPHELFGRLKAEKVGSLPPDLVFFPR*
Ga0073928_102206232	3300006893	Iron-Sulfur Acid Spring	MMCASSELRVTVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPDLTFFPR*
Ga0073928_109818742	3300006893	Iron-Sulfur Acid Spring	GTIYRAAGRERPHELFGRLKAEKVGSLPPVLVFFPR*
Ga0099793_102548301	3300007258	Vadose Zone Soil	MMCVSSELPVTVEKTAGTIYRAGGRERPQELFGRLEAQKVG
Ga0099830_115661502	3300009088	Vadose Zone Soil	ELPVTVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPVLVFFPR*
Ga0099828_104238051	3300009089	Vadose Zone Soil	VKAKVTVEKTCGTIDRAAGRERPHELFGRLKAEKVGSLPPDL
Ga0116138_11055761	3300009552	Peatland	VICLSSELPVTVEKKAGTDYRAGGRERPHELFGRLKAEKVGSL
Ga0116219_105835182	3300009824	Peatlands Soil	ERHTVPPLVMYVSSELPVTVEKTPGTIYRGAGRERPHELFGRLKAEKVGSLPPDLTFFPR
Ga0137391_104689522	3300011270	Vadose Zone Soil	GVSPLLMCVSSELPVTVEKKAGTNYRAGGRERPHELFGRLKAEKVGSLPPDLTFFPR*
Ga0137391_110043842	3300011270	Vadose Zone Soil	VFSELPVTVEKTVGTIYRAAGRERPHKLFGRLKAEKVGSLPPDLVFFPR*
Ga0137393_106975911	3300011271	Vadose Zone Soil	MCISSELPVTVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPDLVF
Ga0137389_108688681	3300012096	Vadose Zone Soil	LLVTVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPVLVFFPR*
Ga0137389_111355231	3300012096	Vadose Zone Soil	VICLFTELLVTVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPVL
Ga0137388_109519653	3300012189	Vadose Zone Soil	MCVSSELPVTVEKTAGTIYRAAGRERPHELFGRLKAEKVGS
Ga0137363_102299113	3300012202	Vadose Zone Soil	LLICVFAELPVTVEKTVGTTYRAGGRERPQELFGRLKAEKVGSLPPVLVFFPR*
Ga0137363_103787921	3300012202	Vadose Zone Soil	PVTVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPDSVFFPR*
Ga0137363_105690561	3300012202	Vadose Zone Soil	MCVFSELSVTVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPVLVFFPR*
Ga0137362_101083291	3300012205	Vadose Zone Soil	RTVEKTAGTVICAGGRVRPHELFGRLKAEKVGSHPPDLTFFPR*
Ga0137376_115964861	3300012208	Vadose Zone Soil	SKLTCSETLFRTVEKTAGTVICAGGRVRPHELFGWLKAEKVGSHPPDFVFF*
Ga0137377_109120132	3300012211	Vadose Zone Soil	LISGMLVLLSKLTCSETLLRTVEKTVGTVICAGGRVRPHELFGRLKAEKVGSLPPDSVLFPQ*
Ga0137360_104538622	3300012361	Vadose Zone Soil	PVTVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPVLVFFPR*
Ga0137360_108545982	3300012361	Vadose Zone Soil	SELPVIVEKIVGTIYRAAGRERPHELFGRLKAEKVGSLPPDLVFFPR*
Ga0137360_116971713	3300012361	Vadose Zone Soil	MCVFSELPVTMEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPP
Ga0137390_108836681	3300012363	Vadose Zone Soil	TVPPLVMCVSSELPVTVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPDLTFFPR*
Ga0137358_107701541	3300012582	Vadose Zone Soil	VVCLSSELPVTVEKKAGTNYRAAGRERPHELFGRLKAEKVGSLPPDLTFF
Ga0137395_103070241	3300012917	Vadose Zone Soil	ELPVTVEKTVGTIYRAAGRERPHELFGRLKAEKVGSLPPDSVFFPR*
Ga0137395_103976971	3300012917	Vadose Zone Soil	PLLMCVFSEMPVTVEKTAGTLYRAAGRERPHELFGRLKAGKVGSHPPDFVFFSR*
Ga0137396_110810963	3300012918	Vadose Zone Soil	MCVFSELPVTMEKTAGTIYRAAGRELPHELFGRLKA
Ga0137359_107419592	3300012923	Vadose Zone Soil	LISGMLVLLSKLTCSETLLRTVEKTVGTVICDGGRVRPHELFGRLKAEKVGSHPPVLVLFPR*
Ga0137419_107581311	3300012925	Vadose Zone Soil	MCGFSELPVTVEKTVGTTYRAAGRERPHELFGRLKAEKVGSLPPDLTFFHGLFWFCSGSILLPVT
Ga0137419_112599591	3300012925	Vadose Zone Soil	LPVTVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPVLVFFPR*
Ga0137416_111722602	3300012927	Vadose Zone Soil	TVPPLVMCVSSELPVTVEKTAGTIYRATGRERPHELFGRLKAEKVGSLPPDLTFFPR*
Ga0137410_111497622	3300012944	Vadose Zone Soil	VFSELPVTVEKTVGTIYRAARRERPHELFGRLKAEKVGSLPPDSVFFPR*
Ga0182018_103242443	3300014489	Palsa	AEKTPGTIQRAAGRERPHELFGRLKAEKVGSLPPVLVFFPR*
Ga0137409_113664661	3300015245	Vadose Zone Soil	PPLLICVFAELSVTVEKTVGTTYRAGGRERPQELFGRLKAEKVGSLPPVLVFFPR*
Ga0137403_104186341	3300015264	Vadose Zone Soil	MCVFSELPVTVEKTVGTIYRAAGRERPHALFGRLKAEKVGSPPARFGVFSTV
Ga0187807_12578001	3300017926	Freshwater Sediment	MMCASSELPVTVEKTAGTIYRAGGRERPQELFGRLEAQKVGSLPPDLTFF
Ga0187819_104480751	3300017943	Freshwater Sediment	VFFSELPVTVEKTIGTTYRAGGRERPHELFGRLKAEKVGSLPPVL
Ga0187816_104160693	3300017995	Freshwater Sediment	MCGTSELCRTVEKTAGTIDRAAGRERPHELFGRLKAEKVGSLPPDL
Ga0187869_105486841	3300018030	Peatland	MCVSSELPVTVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPD
Ga0179592_103450401	3300020199	Vadose Zone Soil	MICFSSEVPATVEKTAGTIYRAAGRERPHELFGRLKAEKVGS
Ga0210407_103502782	3300020579	Soil	SSELFVTVEKTAGTIYRAAGRERPHELFGRLQAEKVGSLPPVVVFFPR
Ga0210403_102647283	3300020580	Soil	PELPVTVEKTAGTAYRAAGRERPHELFGRLKAEKVGSLPPDLTFFPR
Ga0210403_105652141	3300020580	Soil	MCVFSELPVTVEKTVGTIYRAAGRERPHALFGRLKAEKVGSLPPVLVFFP
Ga0210399_106920152	3300020581	Soil	ELFVTVEKTAGTIYRAAGRERPHELFGRLQAEKVGSLPPVVVFFPR
Ga0210395_102090831	3300020582	Soil	MCASSELPVTVEKTAGTAYRAAGRERPHELFGRLKAEKVG
Ga0210401_114798721	3300020583	Soil	VTVEKTAGTIHRASGRERPHELFGRLKAEKVGSLPPDLTFFPR
Ga0179596_100648511	3300021086	Vadose Zone Soil	LLMCVSSELPVTVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPDSVFFPR
Ga0210389_111734033	3300021404	Soil	MCVSSELPVTVEKKPGTNYRAAGRERPHELFGRLKAEKVG
Ga0210386_115500182	3300021406	Soil	TVEKTVGTIYRAAGRVRPHELFGRLKAEKVGSHPPVLVFFPR
Ga0210384_102425473	3300021432	Soil	EKTAGTIYRAAGRVRPHELFGRLKAEKVGSHPPVLVFFPR
Ga0210391_103370392	3300021433	Soil	VSFRLPVTVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPVLVFFPG
Ga0210398_104122542	3300021477	Soil	KLACSETLLRTVKKTAGTVICAGGRVRPHELFGRLKAEKVGSHPPDFVFFSR
Ga0224548_10154971	3300022518	Soil	SELPVTVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPDFVFFPR
Ga0224561_10235511	3300023030	Soil	GLCFSELPVTVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPDLTFFPR
Ga0247680_10546651	3300024246	Soil	ELPVTVEKTVGTTYRAGGRERPHELFGRLKAEKVGSLPPVSVFFPR
Ga0247667_10612022	3300024290	Soil	TFCSSSADVYFSGLPVTVEKTVGTIYRAAGRERPHELFGRLKAEKVGSLPPVLVFFPR
Ga0137417_14600641	3300024330	Vadose Zone Soil	KLTCSETLLHTVEETAGTVICAGGRVRPHELFGRLKAEKVGSHPPDLTFFPR
Ga0179593_10519831	3300026555	Vadose Zone Soil	MICFSSEVPATVEKTAGTIYRAAGRERPHELFGRLKAEKVGSHPPV
Ga0209446_10433211	3300027698	Bog Forest Soil	LPVTVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPDLTFFPR
Ga0209248_100297893	3300027729	Bog Forest Soil	ELPVTVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPDLTFFPR
Ga0209248_100531592	3300027729	Bog Forest Soil	SSELPVTVEKTAGTIYRAAGRERPHALFGRLKAEKVGSLPPVLVFFPR
Ga0209517_105277781	3300027854	Peatlands Soil	PVTVEKTAGTIYRAPGRERPHELFGRLKAEKVGSLPPDLTFFPR
Ga0209693_103447812	3300027855	Soil	MCASSELPVTVEKTAGTAYRAAGRERPHELFGRLKAEKVGSLPPDLTFFHGDFRFPRS
Ga0209067_103665831	3300027898	Watersheds	SSELPVTVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPDLTFFPR
Ga0209488_107010652	3300027903	Vadose Zone Soil	LSSELPATVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPVLVFFPR
Ga0308309_101921513	3300028906	Soil	VTVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPVLVFFPR
Ga0308309_102918853	3300028906	Soil	MCASFVFPVTVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPDL
Ga0308309_105218993	3300028906	Soil	VICLSSELPVTVEKKAGTNYRAGGRERPHKLFGRLKAEKVGSLPPDLTFFPTV
Ga0308309_105394953	3300028906	Soil	MCASSELPVTVEKTAGTAYRAAGRERPHELFGRLKAEKVGSLPPDLTFFP
Ga0308309_105881221	3300028906	Soil	VPPLVMCVSSELPVTVEKTAGTIHRAAGRERPHELFGRLKAEKVGSLPPDLTFFPR
Ga0311338_100652827	3300030007	Palsa	TMEKTAGTIYRAEGRERPHELFGRLKAEKVGSLPPDLVFFPR
Ga0311353_100230049	3300030399	Palsa	VSEISALVKKVGTVYRDAGRERPHELFGRLNAEKVGSIPPDSTFFSG
Ga0265762_10999441	3300030760	Soil	RFSSVICLCSELLVTVEKTAGTIYRAAGRERPHELFGRLKAEKVGSLPPVLVFFPR
Ga0302325_117973242	3300031234	Palsa	LVICVSSELPVTVEKTAGTIHRAAGRERPHELFGRLKAEKVGSLPPDLTFFPR
Ga0302324_1025885843	3300031236	Palsa	MRVSIELPVTAEKNTGTIQRAAGRERPHELFGRLKAEKVGSLPPDLTFF
Ga0265316_110040631	3300031344	Rhizosphere	VFSKLSVTVEQTAGTIYRAGGRERPHELFGRLKAEKVGSLPPDLTFFSTVTFTFLG
Ga0310686_1025138753	3300031708	Soil	MRVCSELSVTAEKTPGTIQRAAGRERPHELFGRLKAEKVGSL
Ga0310686_1103099001	3300031708	Soil	ERHTVPPLVICVSSELPVTVEKTAGTIRRAAGRERPHELFGRLKAEKVGSLPPDLTFFPR
Ga0335074_109742781	3300032895	Soil	TAEKTAGTNYRAAGRERPHELFGRLKAEKVGSLPPVVLFFPR
Ga0335072_106017411	3300032898	Soil	DVCSSELRVTVEKASGTICRAAGRERPHELFGRLKAEKVGSLPPDCVFFPR
Ga0335072_110147811	3300032898	Soil	RVTAEKTAGTNYRAAGRERPHELFGRLKAEKVGSLPPVLLFFPR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099804

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences