Metagenome / Metatranscriptome Family F099930

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099930
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	84 residues
Representative Sequence	MAHSTPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY
Number of Associated Samples	67
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	86.27 %
% of genes near scaffold ends (potentially truncated)	25.24 %
% of genes from short scaffolds (< 2000 bps)	69.90 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (71.845 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (42.718 % of family members)
Environment Ontology (ENVO)	Unclassified (46.602 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (66.019 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.18% β-sheet: 0.00% Coil/Unstructured: 39.82%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00691	OmpA	13.59
PF02954	HTH_8	8.74
PF02470	MlaD	6.80
PF13683	rve_3	3.88
PF00196	GerE	2.91
PF07508	Recombinase	2.91
PF07494	Reg_prop	2.91
PF00005	ABC_tran	2.91
PF07730	HisKA_3	1.94
PF02405	MlaE	1.94
PF00158	Sigma54_activat	1.94
PF01527	HTH_Tnp_1	1.94
PF09851	SHOCT	0.97
PF00930	DPPIV_N	0.97
PF02566	OsmC	0.97
PF03551	PadR	0.97
PF06537	DHOR	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	2.91
COG3292	Periplasmic ligand-binding sensor domain	Signal transduction mechanisms [T]	2.91
COG0767	Permease subunit MlaE of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	1.94
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	1.94
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	1.94
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	1.94
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	1.94
COG0823	Periplasmic component TolB of the Tol biopolymer transport system	Intracellular trafficking, secretion, and vesicular transport [U]	0.97
COG1506	Dipeptidyl aminopeptidase/acylaminoacyl peptidase	Amino acid transport and metabolism [E]	0.97
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.97
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.97
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.97
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.97
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.97
COG3488	Uncharacterized conserved protein with two CxxC motifs, DUF1111 family	General function prediction only [R]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.84 %
Unclassified	root	N/A	28.16 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.84 %
Unclassified	root	N/A	28.16 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.84 %
Unclassified	root	N/A	28.16 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	51.46 %
Unclassified	root	N/A	28.16 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	48.54 %
Unclassified	root	N/A	28.16 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	41.75 %
Unclassified	root	N/A	28.16 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.94 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.97 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	0.97 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	41.75 %
Unclassified	root	N/A	28.16 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.94 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.97 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	0.97 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.16 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	6.80 %
Silvibacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium	6.80 %
Acidipila	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila	3.88 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	2.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.94 %
unclassified Bryobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae	0.97 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.97 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.16 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	6.80 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	6.80 %
unclassified Acidipila	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila	3.88 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	2.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.94 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.97 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.97 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.16 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	6.80 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	6.80 %
Acidipila sp. EB88	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp. EB88	3.88 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	2.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.94 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.97 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.97 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_101536846	Not Available	561	Open in IMG/M
3300004479\|Ga0062595_100363011	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1016	Open in IMG/M
3300004479\|Ga0062595_100943488	Not Available	733	Open in IMG/M
3300005436\|Ga0070713_100169804	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1953	Open in IMG/M
3300005439\|Ga0070711_100785324	Not Available	807	Open in IMG/M
3300005445\|Ga0070708_100004986	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	10493	Open in IMG/M
3300005468\|Ga0070707_100003865	All Organisms → cellular organisms → Bacteria	14107	Open in IMG/M
3300005536\|Ga0070697_100011120	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7033	Open in IMG/M
3300005536\|Ga0070697_101114659	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	702	Open in IMG/M
3300005602\|Ga0070762_10163278	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	1341	Open in IMG/M
3300005712\|Ga0070764_10679583	Not Available	633	Open in IMG/M
3300005952\|Ga0080026_10010840	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2138	Open in IMG/M
3300005995\|Ga0066790_10194433	Not Available	867	Open in IMG/M
3300006028\|Ga0070717_10130658	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2159	Open in IMG/M
3300006163\|Ga0070715_10236424	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	948	Open in IMG/M
3300006176\|Ga0070765_100837040	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	870	Open in IMG/M
3300006893\|Ga0073928_10036511	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4618	Open in IMG/M
3300006893\|Ga0073928_10183669	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	1653	Open in IMG/M
3300006904\|Ga0075424_100531103	All Organisms → cellular organisms → Bacteria	1256	Open in IMG/M
3300006904\|Ga0075424_101905202	Not Available	628	Open in IMG/M
3300007076\|Ga0075435_100684032	Not Available	891	Open in IMG/M
3300007982\|Ga0102924_1067410	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1966	Open in IMG/M
3300010400\|Ga0134122_10356031	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1277	Open in IMG/M
3300010880\|Ga0126350_10045939	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	511	Open in IMG/M
3300013297\|Ga0157378_12236341	Not Available	598	Open in IMG/M
3300014489\|Ga0182018_10004862	All Organisms → cellular organisms → Bacteria	11092	Open in IMG/M
3300014501\|Ga0182024_10006225	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	26319	Open in IMG/M
3300014968\|Ga0157379_10062805	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3321	Open in IMG/M
3300020579\|Ga0210407_10031148	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3966	Open in IMG/M
3300020579\|Ga0210407_10557315	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	894	Open in IMG/M
3300020579\|Ga0210407_11220982	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	565	Open in IMG/M
3300020580\|Ga0210403_10164099	All Organisms → cellular organisms → Bacteria	1819	Open in IMG/M
3300020580\|Ga0210403_10291388	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	1337	Open in IMG/M
3300020581\|Ga0210399_10147042	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1948	Open in IMG/M
3300020581\|Ga0210399_10250873	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1475	Open in IMG/M
3300020581\|Ga0210399_10332875	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	1267	Open in IMG/M
3300020581\|Ga0210399_11587813	Not Available	505	Open in IMG/M
3300020582\|Ga0210395_10772199	Not Available	717	Open in IMG/M
3300020583\|Ga0210401_10424554	Not Available	1192	Open in IMG/M
3300020583\|Ga0210401_10736365	Not Available	846	Open in IMG/M
3300021088\|Ga0210404_10241512	Not Available	980	Open in IMG/M
3300021168\|Ga0210406_10001512	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	28160	Open in IMG/M
3300021168\|Ga0210406_10205958	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp. EB88	1630	Open in IMG/M
3300021170\|Ga0210400_10014585	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6238	Open in IMG/M
3300021170\|Ga0210400_10018661	All Organisms → cellular organisms → Bacteria	5431	Open in IMG/M
3300021170\|Ga0210400_10318524	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	1278	Open in IMG/M
3300021171\|Ga0210405_10039583	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3752	Open in IMG/M
3300021178\|Ga0210408_10152447	All Organisms → cellular organisms → Bacteria	1831	Open in IMG/M
3300021180\|Ga0210396_10016947	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6770	Open in IMG/M
3300021180\|Ga0210396_10019643	All Organisms → cellular organisms → Bacteria	6263	Open in IMG/M
3300021403\|Ga0210397_10300767	Not Available	1178	Open in IMG/M
3300021404\|Ga0210389_10242184	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	1410	Open in IMG/M
3300021405\|Ga0210387_10025773	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	4605	Open in IMG/M
3300021420\|Ga0210394_10000325	All Organisms → cellular organisms → Bacteria → Acidobacteria	109445	Open in IMG/M
3300021420\|Ga0210394_10391971	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	1221	Open in IMG/M
3300021420\|Ga0210394_10595552	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp. EB88	972	Open in IMG/M
3300021420\|Ga0210394_11303806	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	620	Open in IMG/M
3300021432\|Ga0210384_10044775	All Organisms → cellular organisms → Bacteria	4043	Open in IMG/M
3300021432\|Ga0210384_10455384	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp. EB88	1152	Open in IMG/M
3300021432\|Ga0210384_10684701	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300021432\|Ga0210384_11134611	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300021478\|Ga0210402_10150928	All Organisms → cellular organisms → Bacteria	2116	Open in IMG/M
3300021478\|Ga0210402_10532486	Not Available	1090	Open in IMG/M
3300021478\|Ga0210402_11704653	Not Available	557	Open in IMG/M
3300021479\|Ga0210410_11429310	Not Available	584	Open in IMG/M
3300021559\|Ga0210409_10203535	All Organisms → cellular organisms → Bacteria	1802	Open in IMG/M
3300021559\|Ga0210409_10340077	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	1349	Open in IMG/M
3300023259\|Ga0224551_1000077	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	10957	Open in IMG/M
3300025320\|Ga0209171_10262153	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	939	Open in IMG/M
3300025910\|Ga0207684_10000994	All Organisms → cellular organisms → Bacteria	31792	Open in IMG/M
3300026217\|Ga0209871_1008550	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1926	Open in IMG/M
3300026294\|Ga0209839_10147233	Not Available	779	Open in IMG/M
3300027537\|Ga0209419_1116610	Not Available	532	Open in IMG/M
3300027583\|Ga0209527_1102933	Not Available	640	Open in IMG/M
3300027610\|Ga0209528_1037907	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	1066	Open in IMG/M
3300027727\|Ga0209328_10194003	Not Available	613	Open in IMG/M
3300027895\|Ga0209624_10265341	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1142	Open in IMG/M
3300027908\|Ga0209006_10115078	All Organisms → cellular organisms → Bacteria	2378	Open in IMG/M
3300028906\|Ga0308309_10030771	All Organisms → cellular organisms → Bacteria	3676	Open in IMG/M
3300028906\|Ga0308309_10820310	Not Available	808	Open in IMG/M
3300029636\|Ga0222749_10104199	All Organisms → cellular organisms → Bacteria	1335	Open in IMG/M
3300029636\|Ga0222749_10157287	Not Available	1111	Open in IMG/M
3300029636\|Ga0222749_10438120	Not Available	698	Open in IMG/M
3300029999\|Ga0311339_10994720	Not Available	787	Open in IMG/M
3300030991\|Ga0073994_12060829	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1056	Open in IMG/M
3300031708\|Ga0310686_104603492	All Organisms → cellular organisms → Bacteria	2204	Open in IMG/M
3300031708\|Ga0310686_118287435	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	854	Open in IMG/M
3300031718\|Ga0307474_10016938	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5284	Open in IMG/M
3300031718\|Ga0307474_10021012	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	4758	Open in IMG/M
3300031753\|Ga0307477_10107929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1937	Open in IMG/M
3300031753\|Ga0307477_10384411	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	962	Open in IMG/M
3300031754\|Ga0307475_10330014	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp. EB88	1225	Open in IMG/M
3300031754\|Ga0307475_10341923	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1202	Open in IMG/M
3300031754\|Ga0307475_10999585	Not Available	657	Open in IMG/M
3300031754\|Ga0307475_11063283	Not Available	634	Open in IMG/M
3300031820\|Ga0307473_10038224	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2168	Open in IMG/M
3300031823\|Ga0307478_10057384	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2905	Open in IMG/M
3300031823\|Ga0307478_10275544	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1372	Open in IMG/M
3300031962\|Ga0307479_10600656	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300031962\|Ga0307479_10867627	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300031962\|Ga0307479_11458091	Not Available	642	Open in IMG/M
3300032180\|Ga0307471_100180507	All Organisms → cellular organisms → Bacteria	2081	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.15%
Host-Associated	Host-Associated	4.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.26%
Plants	Host-Associated → Plants	4.85%
Aquatic	Environmental → Aquatic	3.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.32%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.85%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.88%
Peat	Environmental → Terrestrial → Peat	1.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.11%
Loam	Environmental → Terrestrial → Soil → Loam	20.39%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.85%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.94%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	57.28%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.74%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.85%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	3.88%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	3.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	42.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	14.56%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.80%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.85%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	3.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.94%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.97%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.97%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.97%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.97%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300023259	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 20-24	Environmental	Open in IMG/M
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026217	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045 (SPAdes)	Environmental	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300027537	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1015368461	3300002245	Forest Soil	RGNRTSLPVISEKTETRDALYLFACHAEWCTTQSLVEYRELLAAIDDHDCYIRTLAEELLTRSSSRPATDTDIETW*
Ga0062595_1003630112	3300004479	Soil	MANSTPDRKSPPVESVRSNGTGLADISNETEPRDALYLFACHVEWCTKQRLVEYKELLAAIDDHDCYIRTLAEELLTRNSSRPAY*
Ga0062595_1009434881	3300004479	Soil	MANSTPNQKSPPAESVRGNRTALAEISEREETRDALYLFACHVEWCTQQSLVEYKELLAAINDHDCYSRTLADELLTRSLSRPAY*
Ga0070713_1001698043	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MANSTPDRKSPPVESVRSNGTGLADISKEKETRDALYLFACHVEWCTKQSLVEYKELLAAIDDHDCYIRTLAEELLTRNSSRPAY*
Ga0070711_1007853241	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MANSTPNQKSPPAESVRGNRTALAEISEREETRDALYLFACHVEWCTQQSLVEYKELLAAIDDHDCHIRTLAEELLTRSSSRPAY*
Ga0070708_1000049866	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MAHSAPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVAYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY*
Ga0070707_1000038656	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MAHSAPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTTQSLVAYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY*
Ga0070697_1000111205	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MAHSTPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY*
Ga0070697_1011146591	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	PNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVAYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY*
Ga0070762_101632782	3300005602	Soil	MANSTPNQKTSPAETVHSNRTGLAEISEKKTRDPLYLFACHVEWCTKQSLVEYNELLAAMDDHDCYIRTHAEELATRSSSRPTY*
Ga0070764_106795831	3300005712	Soil	MPNSTPNQKSPPAESVCCNRTSLSEVSERNETRDALYLFACHVEWCSKQSLVEYKELLAARDDHDCQIRTLAEELVSRSSSRPTY*
Ga0080026_100108403	3300005952	Permafrost Soil	MANSTPNQKSSPAESVLSNRTGLSDISERKETRDALYLFACHVEWCTRQSLVEHNELLAAMDDHDCYIRTLAEELITRSSSRPRY*
Ga0066790_101944331	3300005995	Soil	MANSTPNQKSSPAESVLSNRTGLSDISERKETRDALYLFACYVEWCTRQSLVEHNELLAAMDDHDCYIRTLAEELITRSSSRPRY*
Ga0070717_101306582	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MAHSTPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVAYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY*
Ga0070715_102364243	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	SPPVESVRSNGTGLADISKEKETRDALYLFACHVEWCTKQSLVEYKELLAAIDDHDCYIRTLAEELLTRNSSRPAY*
Ga0070765_1008370402	3300006176	Soil	MLANIIAPGVEVRKMANSTPNQKSSPAESVRGNRTSLPVISEKTETRDALYLFACHAEWCTTQSLVEYRELLAAIDDHDC
Ga0073928_100365113	3300006893	Iron-Sulfur Acid Spring	MANSTANQKSSPAESVRSNRTGLSDTSERKETRDALYLFACHVEWCTRQSLFEYSELLAAMDDHDCHIRTLAEELVTRSSSRPRYTYIEAW*
Ga0073928_101836692	3300006893	Iron-Sulfur Acid Spring	MRKTAKGTQNQKSSPAESVSSNRTGLSDISERKETRDALYLFACHVEWCTKQSLVEYNELLAAMDDHDDYICTLAEELVTRTHRGLGTDADIEAW*
Ga0075424_1005311032	3300006904	Populus Rhizosphere	MANSTPNQKRPPAESVRSNRTGLSDISGRKETRDALYLFACHVEWCTKQRLVEYNELLAAMDDHDCYIRTLAEELVTRSSPRPTY*
Ga0075424_1019052022	3300006904	Populus Rhizosphere	NSTPDRKSPPVESVRSNGTGLADISKEKETRDALYLFACHVEWCTKQSLVEYKELLAAIDDHDCYIRTLAEELLTRNSSRPAY*
Ga0075435_1006840321	3300007076	Populus Rhizosphere	SGVEVRKMANSTPDRKSPPVESVRSNGTGLADISKEKETRDALYLFACHVEWCTKQSLVEYKELLAAIDDHDCYIRTLAEELLTRNSSRPAY*
Ga0102924_10674102	3300007982	Iron-Sulfur Acid Spring	MANRTPNQKSSPAESVRSNRTGLAEISERKETRDALYLFACHVEWCTKQSLVEYNELLAAMDDHDDYICTLAEELVTRTHRGLGTDADIEAW*
Ga0134122_103560311	3300010400	Terrestrial Soil	KKMANSTPNQKSPPAESVRGNRTALAEISEREETRDALYLFACHVEWCTQQSLVEYKELLAAINDHDCYSRTLADELLTRSLSRPAY*
Ga0126350_100459391	3300010880	Boreal Forest Soil	MANSTPNQKSSPAESVRSNRTGLSDISERNEARDALYLFACHVEWCTKQSLVEYKELLAAIDDHDCYIRTLAEELLTRSSSGWAPEL*
Ga0157378_122363412	3300013297	Miscanthus Rhizosphere	MANSTPNQKSPPAESVRGNRTALAEISEREETRDALYLFACHVEWCTQQSLVEYKELLAAINDHDCYSRTLAD
Ga0182018_100048621	3300014489	Palsa	MANSTPNQKSSPAESVPGNRTGLSDISERKETRDALYLFACHVEWCTKQSLIEYNELLAAMDDHDCYICTLAEELVTRTSSRPSLNNS*
Ga0182024_100062252	3300014501	Permafrost	MANSTPNQKSSPAESVPGNRTGLSDISERKETRDALYLFACHVEWWTKQSLIEYNELLAAMDDHDCYICTLAEELVTRSSSRPRY*
Ga0157379_100628051	3300014968	Switchgrass Rhizosphere	NSTPNQKSPPAESVRGNRTALAEISEREETRDALYLFACHVEWCTQQSLVEYKELLAAINDHDCYSRTLADELLTRSLSRPAY*
Ga0210407_100311484	3300020579	Soil	MANSTPNQKSSPAESVRSNRTGLSEISEKKTRDPLYLFACHVEWCTKQSLVEYNELLAAMDDHDCYIRTLAEELATRSSSRPTY
Ga0210407_105573151	3300020579	Soil	MANSTPNQKSSPAESVRSNRSGLSDMSERKEIRDALYLFACHVEWCTKQSLVEYNELFAAMDDHDCDIRVLAEEL
Ga0210407_112209821	3300020579	Soil	MANNTPNQKSSPTESVRSNRTGLSDKSERKETRDALYLFACHVEWCTKQSLVEYSELLAAMDDHDCHIRSLAEELAARSSSRPTH
Ga0210403_101640992	3300020580	Soil	MANSTPNQKSPQAESVCCNRTSLADRSKNNEHRDALYLFACHVEWCTKQSLVEYNELLAAKDDHDCHIRTLAEELATRSSSRPSTGTDIEA
Ga0210403_102913882	3300020580	Soil	MAHSTPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEELLTRSSSGPAY
Ga0210399_101470423	3300020581	Soil	MPHCTRNRKSSPAESVRSNRTGLAEISERTEPRDALYLFACHVEWCTKQSLVEYKELLAAIDDHDGSIRTLAEELLTRSPSRPAY
Ga0210399_102508731	3300020581	Soil	MANSTPNQESSPAESVRSNRTGLAEISEKTETRDALYLFACHVEWCTKQSLVEYKELLAAIDDHDCYIRTVAEELLTRNSSRPAY
Ga0210399_103328752	3300020581	Soil	MANSTPNQKSSPAESVRSDRTGLAEISEKKTRDPLYLFACHVEWCTKQSLVEYNELLAAMDDHDCYIRTLAEELATRSSSRPTY
Ga0210399_115878131	3300020581	Soil	MAHSTPNQKSSPTESVRSNRTGLAEISEKTETRDPLYLFACHVEWYTKQSLVEYRELLAAIDDHDGYIRTLAEELLTRSSSRPAYWRRY
Ga0210395_107721991	3300020582	Soil	MANSTPNQKSPPAESFRSNRTGLSDVSERNETRAALYLFTCHVEWCTKQSLFEYSELLAAMDDHDCHIRTLAEELVTRSSSRPTY
Ga0210401_104245542	3300020583	Soil	MANSTPNQKSPPAESVRGNRTALAEISERVKTRDALYLFACHVEWCTQQSLVEYKELLAAINDHDCYIRTLADELLTRNLSRPAY
Ga0210401_107363651	3300020583	Soil	MEHSTPNQKSSPTESVRGNRTGLAETSEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY
Ga0210404_102415121	3300021088	Soil	MANSTPDRKSPPVESVRSNGTGLADISKEEETRDTLYLFACHVEWCTKQSLVEYKELLAAIDDHDCYIRTLAEELLTRNSSRPAY
Ga0210406_100015126	3300021168	Soil	MANSTPNQKTSPAETVHSNRTGLAEISEKKTRDPLYLFACHVEWCTKQSLVEYNELLAAMDDHDCYIRTLAEELATRSSSRPTY
Ga0210406_102059582	3300021168	Soil	MAKSTPNQKSFLAESVRSNRTGVSDISERKETRDAFYLFACHVEWCSKQSLVEYKELLAAIGDHDCHIRTLAEKLLTRSSSRPAY
Ga0210400_100145853	3300021170	Soil	MANSTPNQKSSPAESVSNRTGLAEIGEKTETRDALYLFACHVEWRTKQSLVEYKELLAAIDDHDCCIRTLAEELLTRSSSRPTY
Ga0210400_100186613	3300021170	Soil	MANSTPNQKSSPAESIRNNITGLAEIWEKTETRDALYLFACHVEWCTKQSLLEYKELLAAIDDHDCYICTLAEELLTRSSSRPAY
Ga0210400_103185242	3300021170	Soil	MAHSTPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY
Ga0210405_100395832	3300021171	Soil	MANSTPNQKSSPAESVRSNRSGLSDISERKETRDALYLFACHVEWCTKQSLVEYNELLAAMDDHDCYICTLAEELVTRSSSRPGY
Ga0210408_101524471	3300021178	Soil	SPAESVRSNRSGLSDMSERKETRDALYLFACHVEWCTKQSLVEYNELFAAMDDHDCDIRVLAEELATRSSSRPTY
Ga0210396_100169474	3300021180	Soil	MANSTPNQKSSPAETVRSNRTGLAEISEKKTRDPLYLFACHVEWCTKQSLVEYNELLAAMDDHDCYIRTLAEELATRSSSRPTY
Ga0210396_100196432	3300021180	Soil	MAHSTPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVKYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY
Ga0210397_103007671	3300021403	Soil	MANSTPNQKNSPAESVRSNRSGLSDISERKETRDALYLFACHVEWCTKQSLVEYNELLAAMDDHDCYIRTLAEELATRSSSRPTY
Ga0210389_102421842	3300021404	Soil	MANSTPNQESSPAESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEELLTRSSSGPAY
Ga0210387_100257732	3300021405	Soil	MANNTPNQKSSPAESVRCNRTGLAKISEKTETRDALYLLACHVEWCTKQSLVKYNELLLAAMDDHDGYIRTLAEELLTRSSSRPAY
Ga0210394_100003258	3300021420	Soil	MPNSTPNQKSPPAESVCCNRTSLSEVSERNETRDALYLFACHVEWCSKQSLVEYKELLAARDDHDCQIRTLAEELVSRSSSRPTY
Ga0210394_103919713	3300021420	Soil	MANRTPNQKSSPAESVRSNRTGLAEISERKETRDALYLFACHVEWCTKQSLVEYNELLAAMDDHDDYICTLAEELVTRTHRGLGTDADIEAW
Ga0210394_105955522	3300021420	Soil	MAHTTPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY
Ga0210394_113038061	3300021420	Soil	MANSTPNQKSSPAESVRSDRTGLAEISEKKTRDPLYLFACHVEWCTKQSLVEYNELLAAMDDHDCYIRTHAE
Ga0210384_100447752	3300021432	Soil	MANSTPNQKSSPAESVRSNRSGLSDMSERKETRDALYLFACHVEWCTKQSLVEYNELLAAMDDHDCDIRVLAEELATRSSSRPTY
Ga0210384_104553842	3300021432	Soil	MANSTPNQESSPAESVRSNRTGLAEISEKTETRDALYLFACHVEWCTKQSLVEYKELLAAIDDHDCYIRTV
Ga0210384_106847012	3300021432	Soil	MANSTPNQKNSPAESVRSNRSGLSDISERKETRDALYLFACHVEWCTKQSLVEYNELLAAMDDHDCYICTLAEELVTRSSSRPTY
Ga0210384_111346112	3300021432	Soil	MANSTPNQKSPPAESVRGNRTALAEISERVKTRDALYLFACHVEWCTQQSLVEYKELLAAINDHDCYIRTLADELLTRN
Ga0210390_106873852	3300021474	Soil	MAHSTPNQKSSPTESVRSNRTGLAETSEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYI
Ga0210402_101509282	3300021478	Soil	MAHTTPNQKSSPTESVRSNRTDPSDKSERKETRDALYLFACHVEWCTKQSLVEYNELLAAMDDHDCHIRTLAEELATRNSSRPTH
Ga0210402_105324861	3300021478	Soil	RHNSRGIEVRKMAHSTPNQKSSPAESVPSNRTDLSDVSERNETRDALYLFACHVEWCTKQSLFEYSELLAAMDDHDCHIRTLAEELATRSSSRPSTGTDIEAW
Ga0210402_117046531	3300021478	Soil	MANSTPNQKSSPAESVSNRTGLAEIWEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEELLTLSSSRPAY
Ga0210410_114293101	3300021479	Soil	MAHSTPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEQLLTRSSSR
Ga0210409_102035353	3300021559	Soil	PAESVRSNRSGLSDMSERKETRDALYLFACHVEWCTKQSLVEYNELFAAMDDHDCDIRVLAEELATRSSSRPTY
Ga0210409_103400771	3300021559	Soil	MEHSTPNQKSSPTESVRGNRTGLSGISEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY
Ga0224551_10000774	3300023259	Soil	MANSTPNQKRSPAESVRTNRTGLSDISERTEARDALYLFACHVEWCTKQSLVEYNELLAAMDDHDEYICTLAKELVTRSSPGLRTDTNIEAW
Ga0209171_102621532	3300025320	Iron-Sulfur Acid Spring	MRKTAKGTQNQKSSPAESVSSNRTGLSDISERKETRDALYLFACHVEWCTKQSLVEYNELLAAMDDHDDYICTLAEELVTRTHRGLGTDADIEAW
Ga0207684_1000099418	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MAHSAPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVAYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY
Ga0209871_10085502	3300026217	Permafrost Soil	MANSTPNQKSSPAESVLSNRTGLSDISERKETRDALYLFACHVEWCTRQSLVEHNELLAAMDDHDCYIRTLAE
Ga0209839_101472332	3300026294	Soil	MANSTPNQKSSPAESVLSNRTGLSDISERKETRDALYLFACYVEWCTRQSLVEHNELLAAMDDHDCYIRTLAEELITRSSSRPRY
Ga0209419_11166101	3300027537	Forest Soil	MAHSTPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEELLTR
Ga0209527_11029332	3300027583	Forest Soil	MAHSTPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDCYIRTLAEELLTRSSSGWAPEL
Ga0209528_10379072	3300027610	Forest Soil	MAHSTPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEELLARSSSRPAY
Ga0209328_101940031	3300027727	Forest Soil	MAHSTPNQKSSPTESVRSNRTGLAETSEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY
Ga0209624_102653412	3300027895	Forest Soil	MANSTPNQKSPPAESVCCNRTSLADRSKNNEHRDALYLFACHVEWCTKQSLVEYNELLAAKDDHDCHIRTLAEELATRSSSRPSTGTDIEA
Ga0209006_101150782	3300027908	Forest Soil	MLANIIAPGVEVRKMANSTPNQKSSPAESVRSNRTGLSDISQRMETRDALYLFACHVEWCTKQSLVEYNELLAAMVNHDCYIRTLAEELLTRSSSRPAY
Ga0308309_100307711	3300028906	Soil	PNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY
Ga0308309_108203101	3300028906	Soil	MANSTPNQKSSPAESVRGNRTSLPVISEKTETRDALYLFACHAEWCTTQSLVEYRELLAAIDDHDCYIRTLAEELLT
Ga0222749_101041992	3300029636	Soil	MANSTPNQKTSPAETVHSNRTGLAEISEKKTRDPLYLFACHVEWCTKQSLVEYNELLAAMDDHDCDIRVLAEELATRSSSRPTY
Ga0222749_101572872	3300029636	Soil	MAHSTPNQKSSPTESVRSNRTGQAEISEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDNHDGYIRTLAEELLTRSSSRPAY
Ga0222749_104381202	3300029636	Soil	SPAESVRSNRTGLSNISESKETCDALYLFACHVEWCTKQNLVEYNELLAAMDDHDCYIRTLAEELATRSSSRPSIGTDIEA
Ga0311339_109947202	3300029999	Palsa	MANSTPNQKSSPVESVRSNRTGLSDMSERKETRDALYLFACHVEWCTKQSLVEYNELRAAMDHHDCYIRTLAEELVTRSSSRPRGTDTDIEA
Ga0073994_120608291	3300030991	Soil	MANSTPNQNSAESVRSNRTGLSDISEKKETRDALYLFACHVEWCTKQSLVEYNELLAAMDDHDCYIRTLAEGLVTRSSSRPTY
Ga0310686_1046034924	3300031708	Soil	MANSTPNQKSSPAESVRCNRTGLSDMERKETRDALYLFACHVEWCTKQSLVEYNELLAAMDHHDSYIRTLAEELVTRSSSRTTY
Ga0310686_1182874352	3300031708	Soil	MANRTPNQKSSPAELVRCNRTGLSDMSERKETRDALYLFACHVECCTKQSLVEYNELLAAMDHHDCHIRTLAEELVTRNSYRPTYCTDIGAW
Ga0307474_100169382	3300031718	Hardwood Forest Soil	MAHSTPNQKSSPTESVRRNRTGLAEISEKTETRDALYLFACHVEWYTKQSPVEYKELLAAIDDHDGYIRTLAEELLTRS
Ga0307474_100210121	3300031718	Hardwood Forest Soil	MRKMANSTPNQTSSPAESVRSNRTGLAEISEKTETRDALYLFACHVEWCTKQSLIEYKELLAAINDHDGYIRTLAEELLIRSSSRPAY
Ga0307477_101079291	3300031753	Hardwood Forest Soil	TPNQKSSPAETVRSNRTGLAEISEKKTRDPLYLFACHVEWCTKQSLVEYNELLAAMDDHDCYIRTLAEELATRSSSRPTY
Ga0307477_103844112	3300031753	Hardwood Forest Soil	MAHSTPNQKSSQTESVRSNRTGLAEVSEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDDDGYIRTLAEELLTRSSSRPAY
Ga0307475_103300141	3300031754	Hardwood Forest Soil	MANSTRNQKSSPAESVSNRTGLAEIWEKTETRDALYLFACHVEWRTKQSLVEYKELLAAIDDHDCCIRTLAEELLTRSSSKPTY
Ga0307475_103419232	3300031754	Hardwood Forest Soil	MANSTPNQKNSPAESVRSNRSGLSDISERKETRDALYLFACHVEWCTKQSLVEYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY
Ga0307475_109995851	3300031754	Hardwood Forest Soil	MAHSTPNQKSSQTESVRSNRTGLAEVSEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDDDGYIRILAEELLTRSSSRPAY
Ga0307475_110632832	3300031754	Hardwood Forest Soil	KMAHSTPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSPVEYKELLAAIDDHDGYIRTLAEELLTRS
Ga0307473_100382243	3300031820	Hardwood Forest Soil	MANSTPDRKSPPVESVRSNGAGLADISKEKETRDALYLFACHVEWCTKQSLVEYKELLAAIDDHDCYIRTLAEELLTRNSSRPAY
Ga0307478_100573844	3300031823	Hardwood Forest Soil	MAHSTPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSPVEYKELLAAIDDHDGYIRTLAEELLTRS
Ga0307478_102755441	3300031823	Hardwood Forest Soil	MANSTPNQKNSPAESVRSNRSGLSDISERKETRDALYLFACHVEWCTKQSLVEYKELLAAIDDHDGYIRTLAE
Ga0307479_106006562	3300031962	Hardwood Forest Soil	MVNSTPDRKSPPVESVRSNGTGLADISNETEPRDALYLFACHVEWCTKQRLVEYKELLAAIDDHDCYIRTLAEELLTRNSSRPAY
Ga0307479_108676271	3300031962	Hardwood Forest Soil	MANSTPNQKSSPAESDRSNRTGLAEISEKTETRDPLYLFACHVEWWTKRSLVEYKELLAAIDHHDCYIRTLAEELLTRSSSSPPY
Ga0307479_114580911	3300031962	Hardwood Forest Soil	MANSTPNQKSSPAESVRSNRSGLSDISKRKDTRDALYLFACHVAWCTKQSLVEYNELLAAMDDHDCYICTLAEELVTRSSSRPRY
Ga0307471_1001805074	3300032180	Hardwood Forest Soil	MANSTPNQKSSPAESVSNRTGLAEIWEKTETRDALYLFACHVEWRTKQSLVEYKELLAAIDDHDCCIRTLAEELLTRSSSSPAY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099930

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences