NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F100003

Metagenome Family F100003

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F100003
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 53 residues
Representative Sequence MKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNEQMLNRNRIEQNGKRI
Number of Associated Samples 67
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Viruses
% of genes with valid RBS motifs 2.91 %
% of genes near scaffold ends (potentially truncated) 20.39 %
% of genes from short scaffolds (< 2000 bps) 54.37 %
Associated GOLD sequencing projects 59
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Predicted Viral (50.485 % of family members)
NCBI Taxonomy ID 10239 (predicted)
Taxonomy All Organisms → Viruses → Predicted Viral

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater
(15.534 % of family members)
Environment Ontology (ENVO) Unclassified
(74.757 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(64.078 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 62.96%    β-sheet: 0.00%    Coil/Unstructured: 37.04%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF03592Terminase_2 28.16
PF03237Terminase_6N 12.62
PF02195ParBc 5.83
PF01555N6_N4_Mtase 3.88
PF05766NinG 2.91
PF13392HNH_3 2.91
PF13539Peptidase_M15_4 1.94
PF14550Peptidase_S78_2 0.97
PF05050Methyltransf_21 0.97
PF08800VirE_N 0.97
PF11922DUF3440 0.97
PF03819MazG 0.97
PF00271Helicase_C 0.97
PF08299Bac_DnaA_C 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG3728Phage terminase, small subunitMobilome: prophages, transposons [X] 28.16
COG0863DNA modification methylaseReplication, recombination and repair [L] 3.88
COG1041tRNA G10 N-methylase Trm11Translation, ribosomal structure and biogenesis [J] 3.88
COG2189Adenine specific DNA methylase ModReplication, recombination and repair [L] 3.88
COG0593Chromosomal replication initiation ATPase DnaAReplication, recombination and repair [L] 0.97

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms56.31 %
UnclassifiedrootN/A43.69 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10173891Not Available755Open in IMG/M
3300000101|DelMOSum2010_c10232248Not Available593Open in IMG/M
3300000117|DelMOWin2010_c10013462All Organisms → Viruses → Predicted Viral4522Open in IMG/M
3300000117|DelMOWin2010_c10016797All Organisms → Viruses → Predicted Viral3931Open in IMG/M
3300000117|DelMOWin2010_c10038628All Organisms → Viruses → Predicted Viral2231Open in IMG/M
3300000117|DelMOWin2010_c10146462Not Available786Open in IMG/M
3300000117|DelMOWin2010_c10225184Not Available562Open in IMG/M
3300000947|BBAY92_10004716All Organisms → Viruses → Predicted Viral3534Open in IMG/M
3300001346|JGI20151J14362_10000378Not Available32903Open in IMG/M
3300001450|JGI24006J15134_10012912All Organisms → Viruses → Predicted Viral4030Open in IMG/M
3300001450|JGI24006J15134_10033782All Organisms → Viruses → Predicted Viral2218Open in IMG/M
3300001450|JGI24006J15134_10042709All Organisms → Viruses → Predicted Viral1909Open in IMG/M
3300004276|Ga0066610_10105457Not Available965Open in IMG/M
3300006735|Ga0098038_1045929All Organisms → Viruses → Predicted Viral1589Open in IMG/M
3300006793|Ga0098055_1073104All Organisms → Viruses → Predicted Viral1355Open in IMG/M
3300006802|Ga0070749_10339149Not Available837Open in IMG/M
3300006919|Ga0070746_10007521Not Available6285Open in IMG/M
3300006919|Ga0070746_10026379All Organisms → Viruses → Predicted Viral3154Open in IMG/M
3300006920|Ga0070748_1014657All Organisms → Viruses → Predicted Viral3345Open in IMG/M
3300006920|Ga0070748_1023174All Organisms → Viruses → Predicted Viral2585Open in IMG/M
3300006920|Ga0070748_1045934All Organisms → Viruses → Predicted Viral1749Open in IMG/M
3300006920|Ga0070748_1075088All Organisms → Viruses → Predicted Viral1311Open in IMG/M
3300006921|Ga0098060_1005178All Organisms → Viruses → Predicted Viral4550Open in IMG/M
3300007540|Ga0099847_1019718All Organisms → Viruses → Predicted Viral2202Open in IMG/M
3300007540|Ga0099847_1033738All Organisms → Viruses → Predicted Viral1639Open in IMG/M
3300008470|Ga0115371_10102926Not Available20016Open in IMG/M
3300009077|Ga0115552_1182462Not Available867Open in IMG/M
3300009149|Ga0114918_10505265Not Available647Open in IMG/M
3300009149|Ga0114918_10639392Not Available560Open in IMG/M
3300009149|Ga0114918_10689439Not Available536Open in IMG/M
3300009449|Ga0115558_1266677Not Available688Open in IMG/M
3300009529|Ga0114919_10665779Not Available710Open in IMG/M
3300010392|Ga0118731_108628715Not Available582Open in IMG/M
3300010430|Ga0118733_104236220Not Available768Open in IMG/M
3300011259|Ga0151662_1250181Not Available889Open in IMG/M
3300017719|Ga0181390_1009126All Organisms → Viruses → Predicted Viral3549Open in IMG/M
3300017719|Ga0181390_1015858All Organisms → Viruses → Predicted Viral2541Open in IMG/M
3300017728|Ga0181419_1012626All Organisms → Viruses → Predicted Viral2452Open in IMG/M
3300017728|Ga0181419_1093424Not Available745Open in IMG/M
3300017762|Ga0181422_1082405All Organisms → Viruses → Predicted Viral1014Open in IMG/M
3300017782|Ga0181380_1036738All Organisms → Viruses → Predicted Viral1782Open in IMG/M
3300017783|Ga0181379_1001907All Organisms → Viruses9755Open in IMG/M
3300018416|Ga0181553_10033959All Organisms → Viruses → Predicted Viral3566Open in IMG/M
3300018416|Ga0181553_10122693All Organisms → Viruses → Predicted Viral1576Open in IMG/M
3300018420|Ga0181563_10145877All Organisms → Viruses → Predicted Viral1494Open in IMG/M
3300019751|Ga0194029_1003571All Organisms → Viruses → Predicted Viral2050Open in IMG/M
3300020185|Ga0206131_10010263Not Available8797Open in IMG/M
3300020185|Ga0206131_10023669All Organisms → Viruses → Predicted Viral4912Open in IMG/M
3300020185|Ga0206131_10029413All Organisms → Viruses → Predicted Viral4197Open in IMG/M
3300020187|Ga0206130_10393174Not Available558Open in IMG/M
3300020421|Ga0211653_10030247All Organisms → Viruses → Predicted Viral2514Open in IMG/M
3300020438|Ga0211576_10399370Not Available703Open in IMG/M
3300022053|Ga0212030_1006897All Organisms → Viruses → Predicted Viral1325Open in IMG/M
3300022072|Ga0196889_1045312Not Available862Open in IMG/M
3300022202|Ga0224498_10075303Not Available964Open in IMG/M
3300022206|Ga0224499_10234479Not Available624Open in IMG/M
3300022218|Ga0224502_10110048Not Available1047Open in IMG/M
3300022928|Ga0255758_10025519All Organisms → Viruses → Predicted Viral3827Open in IMG/M
(restricted) 3300023112|Ga0233411_10000083Not Available32577Open in IMG/M
(restricted) 3300023112|Ga0233411_10141608Not Available781Open in IMG/M
(restricted) 3300023210|Ga0233412_10000335Not Available27673Open in IMG/M
(restricted) 3300023210|Ga0233412_10003435Not Available7351Open in IMG/M
(restricted) 3300023210|Ga0233412_10085543All Organisms → Viruses → Predicted Viral1313Open in IMG/M
(restricted) 3300024052|Ga0255050_10001037All Organisms → Viruses → Predicted Viral3726Open in IMG/M
(restricted) 3300024057|Ga0255051_10215050Not Available694Open in IMG/M
(restricted) 3300024062|Ga0255039_10554631Not Available503Open in IMG/M
3300024262|Ga0210003_1020222All Organisms → Viruses → Predicted Viral4067Open in IMG/M
3300024262|Ga0210003_1035482All Organisms → Viruses → Predicted Viral2723Open in IMG/M
3300024262|Ga0210003_1054610All Organisms → Viruses → Predicted Viral2013Open in IMG/M
3300024262|Ga0210003_1112027All Organisms → Viruses → Predicted Viral1223Open in IMG/M
(restricted) 3300024518|Ga0255048_10063853All Organisms → Viruses → Predicted Viral1834Open in IMG/M
(restricted) 3300024518|Ga0255048_10423508Not Available644Open in IMG/M
(restricted) 3300024529|Ga0255044_10301999Not Available654Open in IMG/M
3300025099|Ga0208669_1017414All Organisms → Viruses → Predicted Viral1890Open in IMG/M
3300025102|Ga0208666_1086831Not Available794Open in IMG/M
3300025168|Ga0209337_1003434All Organisms → Viruses11206Open in IMG/M
3300025168|Ga0209337_1019984All Organisms → Viruses → Predicted Viral3924Open in IMG/M
3300025168|Ga0209337_1030179All Organisms → Viruses → Predicted Viral3016Open in IMG/M
3300025168|Ga0209337_1042668All Organisms → Viruses → Predicted Viral2414Open in IMG/M
3300025168|Ga0209337_1122741All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1169Open in IMG/M
3300025645|Ga0208643_1002437All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage9237Open in IMG/M
3300025652|Ga0208134_1012194All Organisms → Viruses → Predicted Viral3499Open in IMG/M
3300025680|Ga0209306_1003349All Organisms → Viruses6995Open in IMG/M
3300025694|Ga0209406_1014692All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes3700Open in IMG/M
3300025709|Ga0209044_1160083Not Available655Open in IMG/M
3300025759|Ga0208899_1006222Not Available7167Open in IMG/M
3300025759|Ga0208899_1015236All Organisms → Viruses → Predicted Viral4052Open in IMG/M
3300025876|Ga0209223_10294752Not Available738Open in IMG/M
3300025890|Ga0209631_10118208All Organisms → Viruses → Predicted Viral1489Open in IMG/M
3300025890|Ga0209631_10531083Not Available516Open in IMG/M
(restricted) 3300027861|Ga0233415_10000727Not Available15160Open in IMG/M
(restricted) 3300027861|Ga0233415_10005912All Organisms → Viruses → Predicted Viral4928Open in IMG/M
(restricted) 3300027996|Ga0233413_10002404Not Available7875Open in IMG/M
(restricted) 3300027996|Ga0233413_10070753All Organisms → Viruses → Predicted Viral1373Open in IMG/M
(restricted) 3300027996|Ga0233413_10070818All Organisms → Viruses → Predicted Viral1373Open in IMG/M
(restricted) 3300028045|Ga0233414_10011435All Organisms → Viruses → Predicted Viral3401Open in IMG/M
(restricted) 3300028045|Ga0233414_10362379Not Available671Open in IMG/M
3300031539|Ga0307380_10531096Not Available1028Open in IMG/M
3300031565|Ga0307379_10433994All Organisms → Viruses → Predicted Viral1248Open in IMG/M
3300031578|Ga0307376_10262229All Organisms → Viruses → Predicted Viral1162Open in IMG/M
3300031645|Ga0307990_1283533Not Available599Open in IMG/M
3300031669|Ga0307375_10222413All Organisms → Viruses → Predicted Viral1253Open in IMG/M
3300032073|Ga0315315_10002152Not Available18034Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater15.53%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous14.56%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine12.62%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater8.74%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface7.77%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine6.80%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh3.88%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine3.88%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater3.88%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine3.88%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil3.88%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine2.91%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment2.91%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.97%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine0.97%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment0.97%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine0.97%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.97%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater0.97%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.97%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment0.97%
Macroalgal SurfaceHost-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface0.97%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300000947Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92Host-AssociatedOpen in IMG/M
3300001346Pelagic Microbial community sample from North Sea - COGITO 998_met_01EnvironmentalOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300004276Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_165mEnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300006921Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaGEnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300008470Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563EnvironmentalOpen in IMG/M
3300009077Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328EnvironmentalOpen in IMG/M
3300009149Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaGEnvironmentalOpen in IMG/M
3300009449Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426EnvironmentalOpen in IMG/M
3300009529Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaGEnvironmentalOpen in IMG/M
3300010392Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385EnvironmentalOpen in IMG/M
3300010430Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samplesEnvironmentalOpen in IMG/M
3300011259Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_4, 0.2EnvironmentalOpen in IMG/M
3300017719Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21EnvironmentalOpen in IMG/M
3300017728Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24EnvironmentalOpen in IMG/M
3300017762Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18EnvironmentalOpen in IMG/M
3300017782Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19EnvironmentalOpen in IMG/M
3300017783Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10EnvironmentalOpen in IMG/M
3300018416Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018420Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019751Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MGEnvironmentalOpen in IMG/M
3300020185Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1EnvironmentalOpen in IMG/M
3300020187Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1EnvironmentalOpen in IMG/M
3300020421Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300022053Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300022202Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_21EnvironmentalOpen in IMG/M
3300022206Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_24EnvironmentalOpen in IMG/M
3300022218Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_13EnvironmentalOpen in IMG/M
3300022928Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011513CT metaGEnvironmentalOpen in IMG/M
3300023112 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_2_MGEnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300024052 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_5EnvironmentalOpen in IMG/M
3300024057 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_9EnvironmentalOpen in IMG/M
3300024062 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1EnvironmentalOpen in IMG/M
3300024262Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024518 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2EnvironmentalOpen in IMG/M
3300024529 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_21EnvironmentalOpen in IMG/M
3300025099Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025102Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025168Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300025652Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)EnvironmentalOpen in IMG/M
3300025680Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328 (SPAdes)EnvironmentalOpen in IMG/M
3300025694Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426 (SPAdes)EnvironmentalOpen in IMG/M
3300025709Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_130m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025759Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)EnvironmentalOpen in IMG/M
3300025876Pelagic Microbial community sample from North Sea - COGITO 998_met_06 (SPAdes)EnvironmentalOpen in IMG/M
3300025890Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)EnvironmentalOpen in IMG/M
3300027861 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MGEnvironmentalOpen in IMG/M
3300027996 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_6_MGEnvironmentalOpen in IMG/M
3300028045 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_10_MGEnvironmentalOpen in IMG/M
3300031539Soil microbial communities from Risofladan, Vaasa, Finland - UN-3EnvironmentalOpen in IMG/M
3300031565Soil microbial communities from Risofladan, Vaasa, Finland - UN-2EnvironmentalOpen in IMG/M
3300031578Soil microbial communities from Risofladan, Vaasa, Finland - TR-2EnvironmentalOpen in IMG/M
3300031645Marine microbial communities from Ellis Fjord, Antarctic Ocean - #129EnvironmentalOpen in IMG/M
3300031669Soil microbial communities from Risofladan, Vaasa, Finland - TR-1EnvironmentalOpen in IMG/M
3300032073Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1017389133300000101MarineMKIKRKHYKALQYASLIQRWRYLPSNFIFEVVNNSEVNEQMLNRNRIEQNGK*
DelMOSum2010_1023224823300000101MarineMKIKRKHYKALQYASLIQRWRYLPSNFIFEVVNNSEVNEQMLNRNRQEQNGKRI*
DelMOWin2010_1001346273300000117MarineMKIKRKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNESMLNRNRIEQNGKRI*
DelMOWin2010_1001679743300000117MarineMKIKRKHYKALQYASLIQRWKYLPSNFIFEVVQNSEINETMLNRNRIEQNGKRI*
DelMOWin2010_1003862843300000117MarineMKIKRKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNEQMLNRIRIEQNGKRI*
DelMOWin2010_1014646213300000117MarineMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNETMLNRNRIEQNGKRI*
DelMOWin2010_1022518433300000117MarineMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNETMLNRIRIEQNGKRI*
BBAY92_1000471683300000947Macroalgal SurfaceKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNEQMLNRIRIEQNGKRI*
JGI20151J14362_10000378523300001346Pelagic MarineMKIKRKHYKALQYASLIQRWKYLPRNFIFEVVNNSEVNEQMLNRNRIEQNGKRI*
JGI24006J15134_1001291213300001450MarineMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVKEGMLNRNRIERNDKRI*
JGI24006J15134_1003378223300001450MarineMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNETMLNRNRIEQNVKRI*
JGI24006J15134_1004270933300001450MarineMKIKRKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVKEGMLNRNRIEQNGKRI*
Ga0066610_1010545723300004276MarineMKIKRKHYKALQYASLIQRWKYLPSNFIFQVVQNSKVDETMLNRNRIEQNDKRI*
Ga0098038_104592943300006735MarineMKIKKKHYKALQYASLIQRWKYLPPNFIFEVVQNSEVNETMLNRIRIGQNVKRI*
Ga0098055_107310423300006793MarineMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVNNSEVNEQMLNRNRIEQNGKRI*
Ga0070749_1033914943300006802AqueousMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNETMLNRIRIEQNGKRL*
Ga0070746_10007521163300006919AqueousMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNETMLNRIRIEQNGK
Ga0070746_1002637953300006919AqueousMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNEQMLNRIRIEQNGKRI*
Ga0070748_101465733300006920AqueousMKIKRKHYKALQYASLIQRWKYLPPNFIFEVVNNSEVNEGMLNRIRIEQNGKRI*
Ga0070748_102317483300006920AqueousMKIKKKHYKALQYASVIQRWKYLPSNFIFEVVQNCEINEQMLN
Ga0070748_104593433300006920AqueousMKIKRKQYKALQYASLIQRWKYLPSNFIFEVVNNSEVNEQMLNRNRQEQNGKRL*
Ga0070748_107508823300006920AqueousMKIKRKHYKALQYASLIQRWRYLPSNFIFEVVNNSEVNEGMLNRNRIEQNGKRI*
Ga0098060_100517873300006921MarineMKIKKKHYKALQYASLIQRWKYLPPNFIFEVVQNSEVNEQMLNRNRIERNDKRI*
Ga0099847_101971823300007540AqueousMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVNNSEVNEQMLNRNRQEQNGKRI*
Ga0099847_103373833300007540AqueousMKIKKKHYKAIQYASLIQRWKYLPHNFIFEVVQNSKVNEGMLNRNRIEQNGKRI*
Ga0115371_10102926393300008470SedimentMKIKRKHYKALQYASLIQRWKYLPSNFIFEVVTNCEIDEQKLNRNRIEQNDKRI*
Ga0115552_118246213300009077Pelagic MarineMKIKRKHYKALQYASLIQRWKYLPRNFIFQVVQNSEVNEQMLNRNRIEQNGKRI*
Ga0114918_1050526533300009149Deep SubsurfaceMKIKKKHYKALQYASLIQRWKYLPYNFIFEVVNNCEIDEQKLNRNRLEQNGKR
Ga0114918_1063939213300009149Deep SubsurfaceMKIKRKHYKALQYASLIQRWKYLPYNFIFEVVNNSEID
Ga0114918_1068943923300009149Deep SubsurfaceMKIKRKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNEQMLNRNRIEQNDKRI*
Ga0115558_126667733300009449Pelagic MarineMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVNNSEVNEGMLNRNRIEQNGKRI*
Ga0114919_1066577923300009529Deep SubsurfaceMSKTIVVKIATMKIKRKHYKALQYASLIQRWKYLPYNFIFEVVNNSEIDEYKLNRNRQEQNGKRI*
Ga0118731_10862871513300010392MarineMKIKRKHYKALQYASLIQRWKYLPSNFIFEVVNNSEVNEQMLNRNR
Ga0118733_10423622033300010430Marine SedimentLTYMKIKRKHYKALQYASLIQRWRYLPSNFIFEVVNNSEVNEQMLNRNRQEQNGKRI*
Ga0151662_125018133300011259MarineMKIKKKHYKALQYASIIQRWKYLPSNFIFEVVQNSEVNETMLNRNRIEKNDKRI*
Ga0181390_1009126113300017719SeawaterMKIKKKHYKALQYASLIQRWKYLPPNFIFEVVQNSEVNEGMLNRNRIEQNGKRI
Ga0181390_101585823300017719SeawaterMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVNNSEVNETMLNRNRQERNDKRI
Ga0181419_101262673300017728SeawaterMKIKKKHYKALQYASLIQRWKYLPHNFIFEVVQNSKVNEGMLNRNRIEQNGKRI
Ga0181419_109342433300017728SeawaterMKIKKKHYKALQYASLIQRWKYLPPNFIFEVVQNSEVNEGMLNRNRQERNDKRI
Ga0181422_108240523300017762SeawaterMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVNNSDVNEQMLNRNRIEQNGKRI
Ga0181380_103673813300017782SeawaterLQYASLIQRWKYLPPNFIFEVVQNSEVNEGMLNRNRQERNDKRI
Ga0181379_100190763300017783SeawaterMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVNNSEVNEQMLNRNRIEQNGKRI
Ga0181553_1003395933300018416Salt MarshMKIKRKHYKALQYASLIQRWKYLPKNFIFQVVQNCEINEQMLNRNRIEQNGKRL
Ga0181553_1012269353300018416Salt MarshMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNEQ
Ga0181563_1014587713300018420Salt MarshIYMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNETMLNRIRIEQNGKRI
Ga0194029_100357173300019751FreshwaterMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNESMLNRNRIELNGKRI
Ga0206131_10010263133300020185SeawaterMKIKRKHYKALQYASLIQRWRYLPSNFIFEVVQNSEVNEGMLNRNRIEQNGKRI
Ga0206131_1002366933300020185SeawaterMKIKRKHYKALQYASLIQRWKYLPSNFIFEVVNNSEVNEQMLNRNRIEQNGKRL
Ga0206131_1002941393300020185SeawaterMKIKRKHYKALQYASLIQRWKYLPSNFIFEVVNNSEVNEGMLNRNRIEQNGKRI
Ga0206130_1039317433300020187SeawaterMQLLKQKEKYISLTYMKIKRKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNEGMLNRNRIEQNGKRL
Ga0211653_1003024753300020421MarineMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVDETMLNRNRIEQNVKRI
Ga0211576_1039937023300020438MarineMKIKKKHYKALQYASLIQRWKYLPPNFIFEVVNNSEVNEQMLNRNRIEQNGKRI
Ga0212030_100689733300022053AqueousMKIKRKHYKALQYASLIQRWRYLPSNFIFEVVNNSEVNEQMLNRNRQEQNGKRI
Ga0196889_104531243300022072AqueousMKIKRKHYKALQYASLIQRWKYLPPNFIFEVVNNSEVNEGMLNRIRIEQNGKRI
Ga0224498_1007530333300022202SedimentMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNETMLNRNRIEQNGKRI
Ga0224499_1023447923300022206SedimentMKIKRKHYKALQYASLIQRWKYLPSNFIFEVVNNSKVDEQMLNRNRIEQNDKRI
Ga0224502_1011004823300022218SedimentMKIKRKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNESMLNRNRIEQNGKRI
Ga0255758_1002551973300022928Salt MarshMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNETMLNRIRIEQNGKRI
(restricted) Ga0233411_10000083113300023112SeawaterMKIKRKHYKALQYASLIQRWKYLPSNFIFQVVQNSKVDETMLNRNRIEQNDKRI
(restricted) Ga0233411_1014160843300023112SeawaterLQYASLIQRWKYLPSNFIFEVVNNSKVDEQMLNRNRIEQNDKRI
(restricted) Ga0233412_10000335163300023210SeawaterMKIKRKHYKALQYASLIQRWKYLPTNFIFEVVQNSEVNETMLNRNRIEQNGK
(restricted) Ga0233412_1000343543300023210SeawaterMKIKRKHYKALQYASLIQRWKYLPYNFIFEVVQNSEVNEQMLNRNRIERNDKRF
(restricted) Ga0233412_1008554333300023210SeawaterMKIKKKHYKALQYASLIQRWKYLPYNFIFEVVQNSEVNETMLNRNRIEQNDKRI
(restricted) Ga0255050_1000103773300024052SeawaterMKIKRKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNEQMLNRNRLERK
(restricted) Ga0255051_1021505033300024057SeawaterKKSMKIKRKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNEIMLNRNRIERNDKRF
(restricted) Ga0255039_1055463113300024062SeawaterKHYKALQYASLIQRWKYLPSNFIFEVVNNSEVNEQMLNRNRNRIGQNDKRI
Ga0210003_102022263300024262Deep SubsurfaceMKIKKKHYKALQYASLIQRWKYLPYNFIFEVVNNCEIDEQKLNRNRLEQNGKRL
Ga0210003_103548233300024262Deep SubsurfaceMKIKRKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNEQMLNRNRIEQNDKRI
Ga0210003_105461053300024262Deep SubsurfaceMKIKRKHYKALQYASLIQRWKYLPYNFIFEVVNNCEIDEYKLNRNRQEQNDKRI
Ga0210003_111202743300024262Deep SubsurfaceMKIKRKHYKALQYASLIQRWKYLPYNFIFEVVNNSEIDEYKLNRNRQEQNDKRI
(restricted) Ga0255048_1006385323300024518SeawaterMKIKRKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNEIMLNRNRIERNDKRF
(restricted) Ga0255048_1042350833300024518SeawaterMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNETMLNRNRQEQNGKR
(restricted) Ga0255044_1030199933300024529SeawaterMKIKRKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNETMLNRNRI
Ga0208669_101741413300025099MarineMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVNNSEVNEQMLNRNRIERNDKRI
Ga0208666_108683133300025102MarineMKIKKKHYKALQYASLIQRWKYLPPNFIFEVVQNSEVNETMLNRIRIGQNVKRI
Ga0209337_100343443300025168MarineMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVKEGMLNRNRIERNDKRI
Ga0209337_101998473300025168MarineMKIKRKQYKALQYASLIQRWRYLPSNFIFEVVNSCEIDEGMLNRNRIERNDKRI
Ga0209337_103017963300025168MarineMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNETMLNRNRIEQNVKRI
Ga0209337_104266853300025168MarineMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNEQMLNRNRIEQNGKRI
Ga0209337_112274133300025168MarineMKIKRKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVKEGMLNRNRIEQNGKRI
Ga0208643_100243753300025645AqueousMKIKRKHYKALQYASLIQRWRYLPSNFIFEVVNNSEVNEGMLNRNRIEQNGKRI
Ga0208134_101219483300025652AqueousMKIKRKQYKALQYASLIQRWKYLPSNFIFEVVNNSEVNEQMLNRNRQEQNGKRL
Ga0209306_1003349113300025680Pelagic MarineMKIKRKHYKALQYASLIQRWKYLPRNFIFQVVQNSEVNEQMLNRNRIEQNGKRI
Ga0209406_101469213300025694Pelagic MarineMKIKRKHYKALQYASLIQRWKYLPYNFIFQVVQNSEVNEHMLNRNRIEGNDKRI
Ga0209044_116008333300025709MarineKHYKALQYASLIQRWKYLPYNFIFEVVQNSEINETMLNRNRIEQNDKRI
Ga0208899_1006222163300025759AqueousMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNETMLNRIRIEQNGKRL
Ga0208899_101523643300025759AqueousMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNEQMLNRIRIEQNGKRI
Ga0209223_1029475243300025876Pelagic MarineMKIKRKHYKALQYASLIQRWKYLPSNFIFEVVNNSKVD
Ga0209631_1011820833300025890Pelagic MarineMKIKRKHYKALQYASLIQRWKYLPRNFIFEVVNNSEVNEQMLNRNRIEQNGKRI
Ga0209631_1053108313300025890Pelagic MarineMKIKRKHYKALQYASLIQRWRYLPSNFIFEVVNNSEVNEQMLNRNRIEQ
(restricted) Ga0233415_10000727173300027861SeawaterMKIKKKHYKALQYASLIQRWKYLPYNFIFQVVQNSEVNETMLNRNRIEQNDKRI
(restricted) Ga0233415_1000591233300027861SeawaterMKIKKKHYKALQYASLIQRWKYLPYNFIFEVVQNSEVNEQMLNRNRIEQNDKRI
(restricted) Ga0233413_1000240423300027996SeawaterMKIKRKHYKALQYASLIQRWKYLPYNFIFEVVTNCEIDEQKLNRNRIEQNDKRI
(restricted) Ga0233413_1007075343300027996SeawaterMKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNEQMLNRNRIGQNDKRI
(restricted) Ga0233413_1007081813300027996SeawaterMKIKRKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNE
(restricted) Ga0233414_1001143563300028045SeawaterMKIKRKHYKALQYASLIQRWKYLPYNFIFEVVQNSEVNEQMLNRNRLERK
(restricted) Ga0233414_1036237923300028045SeawaterMKIKKKHYKALQYASLIQRWKYLPTNFIFEVVQNSEVNEQMLNRNRIGQNDKRI
Ga0307380_1053109633300031539SoilMKIKKKHYKALQYASLIQRWKYLPYNFIFEVVNNSEIDEYKLNRNRQEQNDKRI
Ga0307379_1043399423300031565SoilMKIKRKHYKALQYASLIQRWKYLPYNFIFEVVNNCEIDEQKLNRNRLEQNGKRL
Ga0307376_1026222933300031578SoilMKIKKKHYKALQYASLIQRWKYLPYNFIFEVVQNSEIDEYKLNRNRQEQNGKRI
Ga0307990_128353313300031645MarineMKIKRKDYKALQYASLIQRWKYLPKNFIFAVVNSCEIDEQKLNRNRLEKWKYLKA
Ga0307375_1022241353300031669SoilVVKITTMKIKKKYYKALQYASLIQRWKYLPYNFIFEVVQNSEIDEYKLNRNRQEQNDKRI
Ga0315315_1000215253300032073SeawaterMKIKRKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVNETMLNRNRIEQNGKRIRRNGLQ

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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