Metagenome / Metatranscriptome Family F100022

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F100022
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	75 residues
Representative Sequence	MKLPPELEFHDDLHLLIYRPHGVIDEAAVKKVVDVLEDLEAKLQKPFDRFSDTLGADEVELNFKYVIQVSLC
Number of Associated Samples	90
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	29.41 %
% of genes near scaffold ends (potentially truncated)	98.06 %
% of genes from short scaffolds (< 2000 bps)	95.15 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (98.058 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (13.592 % of family members)
Environment Ontology (ENVO)	Unclassified (19.417 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.136 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.00% β-sheet: 8.00% Coil/Unstructured: 64.00%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF13561	adh_short_C2	12.62
PF00884	Sulfatase	2.91
PF14707	Sulfatase_C	1.94
PF00232	Glyco_hydro_1	1.94
PF00072	Response_reg	0.97
PF02335	Cytochrom_C552	0.97
PF02656	DUF202	0.97
PF13650	Asp_protease_2	0.97
PF06078	DUF937	0.97
PF13557	Phenol_MetA_deg	0.97
PF03814	KdpA	0.97
PF01116	F_bP_aldolase	0.97
PF03009	GDPD	0.97
PF00005	ABC_tran	0.97
PF04367	DUF502	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG2723	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	Carbohydrate transport and metabolism [G]	1.94
COG0191	Fructose/tagatose bisphosphate aldolase	Carbohydrate transport and metabolism [G]	0.97
COG0584	Glycerophosphoryl diester phosphodiesterase	Lipid transport and metabolism [I]	0.97
COG2060	K+-transporting ATPase, KdpA subunit	Inorganic ion transport and metabolism [P]	0.97
COG2149	Uncharacterized membrane protein YidH, DUF202 family	Function unknown [S]	0.97
COG2928	Uncharacterized membrane protein	Function unknown [S]	0.97
COG3303	Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit	Inorganic ion transport and metabolism [P]	0.97
COG3753	Uncharacterized conserved protein YidB, DUF937 family	Function unknown [S]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.06 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.06 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.06 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	42.72 %
Unclassified	root	N/A	1.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	42.72 %
Unclassified	root	N/A	1.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	36.89 %
Unclassified	root	N/A	1.94 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.97 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	36.89 %
Unclassified	root	N/A	1.94 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.97 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	36.89 %
Unclassified	root	N/A	1.94 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	0.97 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	36.89 %
Unclassified	root	N/A	1.94 %
Verrucomicrobium	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium	0.97 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	36.89 %
Unclassified	root	N/A	1.94 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	0.97 %
Verrucomicrobium spinosum	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → Verrucomicrobium spinosum	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459002\|FZY7DQ102GDZIU	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	503	Open in IMG/M
2170459010\|GIO7OMY02G617P	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
2170459015\|G14TP7Y02H2MFP	Not Available	623	Open in IMG/M
3300000550\|F24TB_10497076	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → Verrucomicrobium spinosum	831	Open in IMG/M
3300000787\|JGI11643J11755_11790717	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	520	Open in IMG/M
3300001431\|F14TB_101643796	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	557	Open in IMG/M
3300002128\|JGI24036J26619_10048842	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300002568\|C688J35102_118989704	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300004025\|Ga0055433_10146085	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	570	Open in IMG/M
3300004081\|Ga0063454_100970859	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	680	Open in IMG/M
3300004157\|Ga0062590_100918263	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300004157\|Ga0062590_101223550	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300004463\|Ga0063356_101454576	All Organisms → cellular organisms → Bacteria	1012	Open in IMG/M
3300004480\|Ga0062592_100236314	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1326	Open in IMG/M
3300005294\|Ga0065705_10276979	All Organisms → cellular organisms → Bacteria	1114	Open in IMG/M
3300005328\|Ga0070676_10332261	All Organisms → cellular organisms → Bacteria	1040	Open in IMG/M
3300005356\|Ga0070674_101737048	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300005434\|Ga0070709_11279537	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300005436\|Ga0070713_101240018	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	722	Open in IMG/M
3300005455\|Ga0070663_100857829	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300005456\|Ga0070678_100482772	All Organisms → cellular organisms → Bacteria	1091	Open in IMG/M
3300005540\|Ga0066697_10231911	All Organisms → cellular organisms → Bacteria	1096	Open in IMG/M
3300005713\|Ga0066905_100086071	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2084	Open in IMG/M
3300005764\|Ga0066903_100581420	All Organisms → cellular organisms → Bacteria	1933	Open in IMG/M
3300005764\|Ga0066903_103644805	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300005764\|Ga0066903_107651626	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	556	Open in IMG/M
3300005842\|Ga0068858_101232103	All Organisms → cellular organisms → Bacteria	736	Open in IMG/M
3300006028\|Ga0070717_11410095	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	633	Open in IMG/M
3300009012\|Ga0066710_103343260	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	611	Open in IMG/M
3300009176\|Ga0105242_12543017	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	560	Open in IMG/M
3300009792\|Ga0126374_10574598	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	827	Open in IMG/M
3300010043\|Ga0126380_10437840	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300010048\|Ga0126373_11144132	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	844	Open in IMG/M
3300010325\|Ga0134064_10086853	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300010335\|Ga0134063_10613200	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	555	Open in IMG/M
3300010337\|Ga0134062_10352961	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	709	Open in IMG/M
3300010358\|Ga0126370_10130409	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1799	Open in IMG/M
3300010358\|Ga0126370_10525381	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1005	Open in IMG/M
3300010371\|Ga0134125_11489259	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300010371\|Ga0134125_11790080	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300010403\|Ga0134123_10552611	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1096	Open in IMG/M
3300012212\|Ga0150985_110152655	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300012349\|Ga0137387_10475894	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300012892\|Ga0157294_10047670	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	962	Open in IMG/M
3300012895\|Ga0157309_10033386	All Organisms → cellular organisms → Bacteria	1202	Open in IMG/M
3300012909\|Ga0157290_10136198	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300012912\|Ga0157306_10418587	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	529	Open in IMG/M
3300012944\|Ga0137410_10767710	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300012951\|Ga0164300_10432515	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300012957\|Ga0164303_10755080	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300012961\|Ga0164302_10061846	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1913	Open in IMG/M
3300012971\|Ga0126369_10913780	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	963	Open in IMG/M
3300012971\|Ga0126369_11215182	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300012986\|Ga0164304_11066150	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300012986\|Ga0164304_11433513	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300012987\|Ga0164307_10648124	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300013306\|Ga0163162_12208912	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	632	Open in IMG/M
3300014166\|Ga0134079_10710686	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	514	Open in IMG/M
3300014325\|Ga0163163_11816247	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300014745\|Ga0157377_10146010	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1458	Open in IMG/M
3300015201\|Ga0173478_10627975	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300015371\|Ga0132258_13569816	All Organisms → cellular organisms → Bacteria	1064	Open in IMG/M
3300016270\|Ga0182036_11267578	All Organisms → cellular organisms → Bacteria → Proteobacteria	614	Open in IMG/M
3300016319\|Ga0182033_10435581	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1115	Open in IMG/M
3300016319\|Ga0182033_11371618	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300016357\|Ga0182032_10063659	All Organisms → cellular organisms → Bacteria	2456	Open in IMG/M
3300016371\|Ga0182034_10191637	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1573	Open in IMG/M
3300016387\|Ga0182040_10839393	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	759	Open in IMG/M
3300016387\|Ga0182040_11657337	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	545	Open in IMG/M
3300018072\|Ga0184635_10200410	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300018482\|Ga0066669_11163155	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300020062\|Ga0193724_1114149	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300021560\|Ga0126371_12119814	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	678	Open in IMG/M
3300022892\|Ga0247753_1032847	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300022898\|Ga0247745_1031975	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300022901\|Ga0247788_1030747	All Organisms → cellular organisms → Bacteria	964	Open in IMG/M
3300025917\|Ga0207660_10054414	All Organisms → cellular organisms → Bacteria	2856	Open in IMG/M
3300025919\|Ga0207657_10043555	All Organisms → cellular organisms → Bacteria	3952	Open in IMG/M
3300025919\|Ga0207657_10791367	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	733	Open in IMG/M
3300025932\|Ga0207690_11692047	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300025937\|Ga0207669_11513160	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300026548\|Ga0209161_10416718	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	590	Open in IMG/M
3300027484\|Ga0207458_1006423	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	612	Open in IMG/M
3300028146\|Ga0247682_1058189	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	700	Open in IMG/M
3300028885\|Ga0307304_10269907	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	745	Open in IMG/M
3300030847\|Ga0075405_11938819	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300031057\|Ga0170834_101046878	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	529	Open in IMG/M
3300031226\|Ga0307497_10321038	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300031231\|Ga0170824_101179185	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1729	Open in IMG/M
3300031446\|Ga0170820_15101973	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	826	Open in IMG/M
3300031782\|Ga0318552_10630880	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300031879\|Ga0306919_10447603	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	994	Open in IMG/M
3300031890\|Ga0306925_10305115	All Organisms → cellular organisms → Bacteria	1712	Open in IMG/M
3300031890\|Ga0306925_10751274	All Organisms → cellular organisms → Bacteria	1016	Open in IMG/M
3300031908\|Ga0310900_11928632	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300031939\|Ga0308174_11507027	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300031945\|Ga0310913_11213418	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300032035\|Ga0310911_10290951	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300032261\|Ga0306920_100644160	All Organisms → cellular organisms → Bacteria	1565	Open in IMG/M
3300032261\|Ga0306920_100914536	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1282	Open in IMG/M
3300032261\|Ga0306920_102612601	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	692	Open in IMG/M
3300033289\|Ga0310914_10501539	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1098	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.50%
Host-Associated	Host-Associated	15.53%
Engineered	Engineered	0.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.55%
Plants	Host-Associated → Plants	15.53%
Aquatic	Environmental → Aquatic	1.94%
Solid Waste	Engineered → Solid Waste	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.74%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.83%
Marine	Environmental → Aquatic → Marine	0.97%
Sediment	Environmental → Aquatic → Sediment	0.97%
Roots	Host-Associated → Plants → Roots	0.97%
Grass	Engineered → Solid Waste → Grass	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.90%
Loam	Environmental → Terrestrial → Soil → Loam	11.65%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.94%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.97%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.97%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.97%
Composting	Engineered → Solid Waste → Grass → Composting	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.07%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.33%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.80%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.91%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.97%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.97%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.62%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.88%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.91%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.94%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.94%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.97%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.97%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.97%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459002	Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm	Environmental	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
2170459015	Litter degradation PV4	Engineered	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002128	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004025	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D1	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S169-409R-5	Environmental	Open in IMG/M
3300022898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S109-311C-5	Environmental	Open in IMG/M
3300022901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300027484	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09.2A1-12 (SPAdes)	Environmental	Open in IMG/M
3300028146	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK23	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030847	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E1_08307260	2170459002	Grass Soil	MKLPPDIEFHEDIRLLIYRPHGLLNEAAFNKVISALEDLEAKLQEPFNRFADTVAAHEVELNFKYIIQASLHRRL
F62_01677270	2170459010	Grass Soil	MKLSPELEFHDDLHLLIYRPQGVIDEAAVKKIVDVLEDLEAKLQKPFNRFFDTLGAHEVELNF
4PV_02478970	2170459015	Switchgrass, Maize And Mischanthus Litter	MKLPSEIEFYEDLRLLVYRPHGVIDEEAIKNIVSVLEDLEAKLQRPFNRFADTLAADEVE
F24TB_104970763	3300000550	Soil	MKLPPDIQFHEDIRLLIYRPRGLLNEAAFNNVVSTLEDLEAKLQEPFDRFSDTVQADEVELNFKYVIQV
JGI11643J11755_117907171	3300000787	Soil	MKLPPEIQFHQDIRLFVYRPXGLLNEAAFNKVLGALEDLEAKLQEPFDRFSDTLAAHEVELNFKYIIQASLHRRLSYAGRPPVKSAI
F14TB_1016437961	3300001431	Soil	MKFPPDIEFHEDIRLLIYRPRGVIDEAAVKRIVSVLEDLEEKSQRPFDRFSDTVQADEVELNFKYVIQVSLCRRLSYAGHPPVKSA
JGI24036J26619_100488422	3300002128	Corn, Switchgrass And Miscanthus Rhizosphere	MKLPPELEFHDDLHLLVYRPHGVIDEEAVKKVVDVLENLEAKLQKPFNRFFDTLGADDVELNFKYVIQVSLCR
C688J35102_1189897042	3300002568	Soil	MKLAPELEFHDDLHLLIYRPQSVIDEAVVKKVVDVLEDLEAKLQKPFNRFFDTLGADEVELNFKYVIQVSLCRR
Ga0055433_101460852	3300004025	Natural And Restored Wetlands	MKMPPEIEFHQDLRLFVWRPCGVLNEAAINKVVITLEDLEARLQEPFNRLSDTLGADEVELNFKYIIQVSL
Ga0063454_1009708592	3300004081	Soil	MKLLPDIEFDEDIRLLIYRPHGVIDEAAVKKVVSVLEDLEAKLQQPFNRFLDGLAADEVELNFKYVIQVSLC
Ga0062590_1009182631	3300004157	Soil	MKLPPDVEFHDDIRLLIYRPHGVIDEAAVQRVVDVLEELEEKLQKPFDRFSDTLEAHDVELNFKYVIQVSLCRR
Ga0062590_1012235501	3300004157	Soil	MKLAPDVEFDEDVRLLVYRPRGVIDEAAVKKVVDVVEELEAKLQKPFNRFFDTLAADEVELNFKYVIQVSLCRR
Ga0063356_1014545763	3300004463	Arabidopsis Thaliana Rhizosphere	MKLPPELEFHDDLHLLIYRPHGVIDEAVVKKVVDIVEELETKLQKPFDRFFDTLGADEVELNFKYVIQVSLCRRLSYSGHPPVKSA
Ga0062592_1002363143	3300004480	Soil	MNLPPEAHFHEDIRLLIWRPRGLVNEAAVNKIVTVLEELEGKLHEPFNRFADTLEADEVELNFKYVIQVSLYRRFTYGNRPPVK
Ga0065705_102769793	3300005294	Switchgrass Rhizosphere	MKLPPELEFHDDIRLLIYRPHGVIDEAAVKRIVDVLEDLEEKLQKPFNRFFDTLAADEVELNFKYVIQVSLCRRLSYA
Ga0070676_103322613	3300005328	Miscanthus Rhizosphere	MKLPPELEFHDDLHLLIYRPHGVIDEEVVKKVVDVLENLEAKLQKPFNRFFDTLGADEVELNFKYVIQ
Ga0070674_1017370481	3300005356	Miscanthus Rhizosphere	MKLPPELEFHDDLHLLIYQPHGVIDEAAVKKIVDVLEDLEAKLQKPFNRFFDTLGADEVELNFKYVI
Ga0070709_112795371	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKLPPEIEFHDDIRLLIYRPHGVIDEAAVKKVVDVLEDLEARLQKPFDRFSDTLQADEVELNF
Ga0070713_1012400182	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MNLPPEIEFHDDIRLLIYRPHGVIDEAAVKKVVDVLEDLEARLQKPFDRFSDTLQADEVELNFKYVIQVSLCRRLSYTGH
Ga0070663_1008578291	3300005455	Corn Rhizosphere	MKLPPELEFHDDLHLLVYRPHGVIDEEAVKKVVDVLENLEAKLQKPFNRFFDTLGADDVELNFKY
Ga0070678_1004827723	3300005456	Miscanthus Rhizosphere	MKLPPELEFHDDLHLLIYRPHGVIDEEVVKKVVDVLENLEAKLQKPFNRFFDTLGADEVELNFKYVIQVSLCRRLSY
Ga0066697_102319111	3300005540	Soil	MKLLPDIEFDEDIRLLIYRPHGVIDEAAVKKVVSVLEDLEAKLQQPFNRFLDGLAADEVELNFKYVIQVSLCRRLSYAGHPPVKSAIL
Ga0066905_1000860712	3300005713	Tropical Forest Soil	MNLPPEIEFHEDLLLLVYRPQGVIDEEAVKKIVSVLEDLEAKLQKPFDRFSDTLQADEVELNFKYVPQGILR*
Ga0066903_1005814204	3300005764	Tropical Forest Soil	MRLLPDVEFHEDIRLFVWRPCGLLNEASVNKVISALGDLEAAMKEPFNRFADTLGADDVDLNFRYVIHV
Ga0066903_1036448052	3300005764	Tropical Forest Soil	MKLPPDVEFHEDIRLFIHRPRGLLNEATINNVVSALEDLEAKSREPFNRFLDTLAADEVELNFKYVIQVSL
Ga0066903_1076516261	3300005764	Tropical Forest Soil	MKLPPDVEFHEDIRLFIHRPRGLLNKTTINKVVWALGDLEAKFKEPFNRFADTLAADEVELNFKYIIQVSLHRRLSYA
Ga0068858_1012321032	3300005842	Switchgrass Rhizosphere	MKLPPEIEFHDDIRLLIYRPHGVIDEAAVKKVVDVLEDLEARLQKPFDRFSDTVQADEVELNFKYVIQVSLC
Ga0070717_114100951	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MKLPPELEFHDDLHLLTYRPHGVIDETAVKKIVDVLEDLEAKLQKPFNRFFDTLGADDVELNFKYVIQVSLCRRLSYSGHPPV
Ga0066710_1033432601	3300009012	Grasslands Soil	MKLPPEIEFHEDIRLLIYKPRGLIDEAAVKKAISVLEDLEAKLHAPFNRFFDTLAADEVELNFKYVIQVSLCRRLSYEGRPPVK
Ga0105242_125430172	3300009176	Miscanthus Rhizosphere	MKLPPELEFHDDLHLLIYQPHGVIDEAAVKKIVDVLEDLEAKLQKPFNRFFDTLGADDVELNFKYVIQVSLCRRLSYSGHPPVKSA
Ga0126374_105745981	3300009792	Tropical Forest Soil	MKLPSELDFREDIRLLTYRPHGVIDDAAVQKVISVLEDLEARLEKPFSRFTDTLAADEVELNFKNVIQFSLCRRLSYAGHPPVKSAIL
Ga0126380_104378401	3300010043	Tropical Forest Soil	MILAPDVEFYEDIRLLVYRPRGVIDEAAIKNIVSVIEHLEAERQEPFNRFCDTLEADEVELNFKYVIHVSLCR
Ga0126373_111441322	3300010048	Tropical Forest Soil	MNSYFRELKQRKAYQVKLPPEIEFHEDIRLFIHRPRGLLNEATINQVVSALGDLEAKVQEPFNRFLDTLAADEVELNFKYVIQVSLHRRLSYTGHPPVKS
Ga0134064_100868532	3300010325	Grasslands Soil	MKLAPDVEFHEDIRLLVYRPCGAIDEPAVKKIIAVLENLEARLQDPFNRFADTLGADEVELNFKYVIQVSL
Ga0134063_106132001	3300010335	Grasslands Soil	VKLPPDVEFHEDIRLLVYRPRGVIDEAAVKKLVSVIEDLEAKLQAPFNRFFDTLAADEVELNFKYVIQVSLCRRLSYAG
Ga0134062_103529612	3300010337	Grasslands Soil	MKLLPDIEFDEDIRLLTYRPHGVIDEAAVKKVVSVLEDLEAKLQQPFNRFLDGLAADEVELNFKYVIQVSLCRRLSYAGHPPVKSAIL
Ga0126370_101304093	3300010358	Tropical Forest Soil	MKLPPELRFHEEKRLLIYRPWGLLNESAINEVLSALEDLEAALKEPFNRFLDTLAADEVELNFKI
Ga0126370_105253812	3300010358	Tropical Forest Soil	MKEISLPPELEFHEKVRLLVYRPHGVLNAAALNRALTALENLEAELHEPFNRLSDTLAADEV
Ga0134125_114892592	3300010371	Terrestrial Soil	MNLPPDVEFHDDIRLLIYRPHGVIDEAAVQRVVDVLEDLEAKLQKPFDRFSDTLEADEIE
Ga0134125_117900802	3300010371	Terrestrial Soil	MMKLPPELQFHDDLHLLIYRPHGVIDEAAVKKVVDVLEDLEAKHQKPFNRFFDTLGADDVELNFKYVIQVSLCRRLSY
Ga0134123_105526113	3300010403	Terrestrial Soil	MNLPPEIEFHDDIRLLIYRPHGVIDEAAVKKVVDVLEDLEARLQKPFDRFSDTLQADEVELNFKYVIQVSLCRRLSYTGHPPV
Ga0150985_1101526552	3300012212	Avena Fatua Rhizosphere	MKLPPELEFHDDLHLLIYRPHGVIDETAVKRVVDVLEDLEARLQKPFDRFFDTLGADEVELNFK
Ga0137387_104758941	3300012349	Vadose Zone Soil	MKLAPDVEFHEDIRLLIYRPHGVINEQALKKVISVLEDLEARLQEPFNRFADTLGADEVELNFKYVIQVSLCR
Ga0157294_100476701	3300012892	Soil	MKLPPELEFHDDLHLLIYRPHGVIDEEVVKKVVEVLENLEARLQKPFNRFFDTLGADEVELNFKYVIQVSLCRRLSYTGH
Ga0157309_100333863	3300012895	Soil	MKLPPELEFHDDLHLLVYRPHGVIDEEAVKKVVDVLENLEAKLQKPFNRFFDTLGADDVELNFKYVIQVSLCRRLSYSGHPP
Ga0157290_101361982	3300012909	Soil	MKLPLELEFHDDLHLLIYRPHGVIDEKAVKKVVDVLENLEAKLQKPFNRFFDTLGADEVELNFKYVIQ
Ga0157306_104185871	3300012912	Soil	MKLPPELEFHDDLHLLIYRPHGVIDEEVVKKVVDVLENLEAKLQKPFNRFFDTLGADEVELNFKYVIQVSLCRRLSYTGHPP
Ga0137410_107677101	3300012944	Vadose Zone Soil	MKLPPELEFHDDLHLLIYRPHGVIDEAAVKKVVDVLEDLEAKLQKPFDRFSDTLGADEVELNFKYVIQVSLC
Ga0164300_104325151	3300012951	Soil	MKLPPELEFHDDTHMLISRPHGVIDEAAVRKVVDVLEDLEAKLQTPFDRFSDTLGADEVELNFKYVIQVSLC
Ga0164303_107550801	3300012957	Soil	MKLPPELEFHDDLHLLIYQPHGVIDEAAVKKIVDVLEDLEAKLQKPFNRFFDTLGADDVELNFKYVIQ
Ga0164302_100618461	3300012961	Soil	MKLPAELEFHDDLHLLIYRPHGVIDEAAVKKVVDVLEDLEAKHQKPFNRFFDTLGADEVELNFKYVIQV
Ga0126369_109137801	3300012971	Tropical Forest Soil	TMKLPPDVEFHEDIRLLIYRPRGLVNEAALNKTLSALEDLEAKLEKPFDRFSDTLATDEVELSFK*
Ga0126369_112151822	3300012971	Tropical Forest Soil	MKLPPELEFHEDIRLLIYRPRGLVNEAALNKTLSALEDLEAKLEKPFDRFSDTLAADEVELNFKYVI
Ga0164304_110661502	3300012986	Soil	MKLPPELEFHDDLHLLIYRPQGVIDEAAVKKVVDVLEDLEAELQKPFNRFFDTLEADEVELNFKYVIQVSLCRRLS
Ga0164304_114335132	3300012986	Soil	MKLPAELEFHDDLHLLIYRPHGVIDEAAVKKVVDVLEDLEAKHQKPFNRFFDTLGADEVELNFKY
Ga0164307_106481241	3300012987	Soil	MKLPPELEFHDDIHLLIYRPRGVIDEAAVKKVVDVLEDLEAELQKPFDRFSDTLGADEVELNFKY
Ga0163162_122089122	3300013306	Switchgrass Rhizosphere	MKLPPELEFHDDLHLLIYQPHGVIDEAAVKKIVDVLEDLEAKLQKPFNRFFDTLGAHEVELNFKYVIQVSLCRRLSYAGHPPV
Ga0134079_107106861	3300014166	Grasslands Soil	MKLAPELEFHDDLHLLIYRPQSVIDEAVVKKVVDVLEDLEAKLQKPFNRFFDTLGADEVELNFKYVIQVSLCRRLSYSGHPPVKSAI
Ga0163163_118162472	3300014325	Switchgrass Rhizosphere	MKLPPELEFHDDLHLLVYRPHGVIDEEAVKKVVDVLENLEAKLQKPFNRFFDTLEADDVELNFKYVIQVSLCRRLS
Ga0157377_101460103	3300014745	Miscanthus Rhizosphere	MKLPPELEFHDDLHLLVYRPHGVIDEEAVKKVVDVLENLEAKLQKPFNRFFDTLGADDVELNFKYVIQVSLCRRLSY
Ga0173478_106279751	3300015201	Soil	MKLPPELEFHDDLHLLIYRPHGVIDEEVVKKVVDVLENLEAKLQKPFNRFFDTLGADEVELNFKYVIQVSL
Ga0132258_135698161	3300015371	Arabidopsis Rhizosphere	MKLSPELEFHDDLHLLIYRPHGVIDEAAVKKIVDVLEDLEAKLQKPFNRFFDTLGADDVELNFKYVIQVSL
Ga0182036_112675782	3300016270	Soil	MKLPPDVEFHEDIRLFIHRPRGLLNEAIINQVVSALGDLEAKLQEPFNRFADTLAADEVELNFKYIIQISLHRRLSYTG
Ga0182033_104355811	3300016319	Soil	MNKIQLPLDVEFHEDIRLLIWRPRGLLNEAAVSNVILALERLEVALQEPFNRLSDTLAADEVELNFEYIIQVSLHRRLSYAGRPPIRSAILATDSTLIHYGQVHALLTQG
Ga0182033_113716182	3300016319	Soil	MKFPPDIAFDEDIRLLVYRPHGVIDEAAVKRVVSVVEDFEAKLQEPFNRFLDTLEADEVELNFKYVVQVSLCRRLSY
Ga0182032_100636591	3300016357	Soil	MNKIQLPLDVEFHEDIRLLIWRPRGLLNEAAVSNVILALERLEVALQEPFNRLSDTLAADEVELNFEYIIQVSLHRRLSYAGRPPIRSAILAT
Ga0182034_101916372	3300016371	Soil	MKLPPDVEFHEDIHLFIHRPHGLLNKATINQVVSALGDLEAKLQEPFNRFLDTLGADEVELNFKYIIQISLHRRVSYAGHPPVK
Ga0182040_108393931	3300016387	Soil	MKLPPEIEFHEDIRLLVYRPHGLLDEAAINKVLGALEDLEAKLQAPFDRFSDTVEADEVELNFKYIIQVSLHRRLSYAGRPPV
Ga0182040_116573371	3300016387	Soil	MNKIKLPPDVEFHEDIHLFIHRPRGLLNEATINQVVSALGDLEAKLQEPFNRFLDTLAADEVELNFKYSFQ
Ga0184635_102004102	3300018072	Groundwater Sediment	MKLPPDVEFHDDIRLLIYRPRGVIDEAAVKRVVDVLEDLEAKLQKPFDRFSDTLEADEVELNFKYV
Ga0066669_111631551	3300018482	Grasslands Soil	VKLPPDVEFHEDIRLLVYRPRGVIDEAAVKKLVSVIEDLEGELQRAFNRFSATLVADEVGLNFKYVIQLSLCRRLPCHGHPPLKSAIIATDSTMIHYARLH
Ga0193724_11141491	3300020062	Soil	MKLPPELEFHDDLHLLIYRPHGVIDEAAVKKVVDVLEDLEAKLQKPFNRFFDTLGADDVELNFKYVI
Ga0126371_121198142	3300021560	Tropical Forest Soil	MKLPPEVEFHEDLHLFIHGPHGLLNEATINQVVSALGDLEAKLQEPFNRFLDTLAADEVELNFKYIIQISLHRRLSYAGHPPVKS
Ga0247753_10328471	3300022892	Soil	MKLPPELEFHDDLHLLIYRPHGVIDEEVVKKVVDVLENLEAKLQKPFNRFFDTLGADEVE
Ga0247745_10319751	3300022898	Soil	MKLPPELEFHDDLHLLVYRPHGVIDEEAVKKVVEVLENLEAKLQKPFNRFFDTLGADEVELNFKYVIQV
Ga0247788_10307471	3300022901	Soil	MKLPPELEFHDDLHLLVYRPHGVIDEEAVKKVVEVLENLEAKLQKPFNRFFDTLGADEVELNFKYVIQVSLCRRLSYTGHPPV
Ga0207660_100544141	3300025917	Corn Rhizosphere	MKLPPELEFHDDLHLLVYRPHGVIDEEAVKKVVDVLENLEAKLQKPFNRFFDTLGADDVELNFKYVI
Ga0207657_100435556	3300025919	Corn Rhizosphere	MKLPPELEFHDDLHLLVYRPHGVIDEEAVKKVVDVLENLEAKLQKPFNRFFDTLGADDVELNFKYVIQVS
Ga0207657_107913672	3300025919	Corn Rhizosphere	MKLPPELEFHDDLHLLIYRPHGVIDEEVVKKVVDVLENLEAKLQKPFNRFFDTLGADEVELNFKYVIQVSLCRRLSYTGHP
Ga0207690_116920472	3300025932	Corn Rhizosphere	MMKLPPDIEFHEDIRLLIYRPHGVIDEAAVKKVVDVLEDLEAKLQKPFDRFSDTLGAHEVELNFKYVIQV
Ga0207669_115131602	3300025937	Miscanthus Rhizosphere	MKLPPELEFHDDLHLLIYRPHGVIDEEVVKKVVDVLENLEAKLQKPFNRFFDTLGADEVELNFKYVIQV
Ga0209161_104167181	3300026548	Soil	MKLLPDIEFDEDIRLLIYRPHGVIDEAAVKKVVSVLEDLEAKLQQPFNRFLDGLAADEVELNFKYVIQVSLCRRLSYAGHPPVKSAI
Ga0207458_10064232	3300027484	Soil	MKLPPDVEFHDDIRLLIYRPHGVIDEAAVQRVVDVLEELEEKLQKPFDRFSDTLEAHDVELNFKYVIQVSLCRRLSYAGHPPV
Ga0247682_10581891	3300028146	Soil	MKLPPEIEFHDDIRLLIYRPHGVIDEAAVKKVVDVLEDLEARLQKPFDRFSDTLQADEVELNFKYVIQVSLCRRLSYTGHPPVKSA
Ga0307304_102699071	3300028885	Soil	MKLPPELEFHDDIHLLIYRPRGVIDEAAVKKLVDVLEDLEAKLQKPFDRFSDTLGADEVELNFKYVIQVSLCRRLSYSGHPPVKS
Ga0075405_119388191	3300030847	Soil	MKLPPELEFHEDIHLLIYRPHGVIDEAAVKKIVDVLEDLEAKLQKPFNRFFDTLGADEVELNFKY
Ga0170834_1010468781	3300031057	Forest Soil	MKIPPDFEFHEDIRLLIYRPHGLLNEAAFNEVISVVEDLEAKLQEPFNRFLDTVAAHEVELNFKYIIQASLHRRLSYAG
Ga0307497_103210381	3300031226	Soil	MKLSPELEFHDDLHLLIYRPHGVIDEAAVKKVVDVLEDFEAKLQKPFDRFFDTLGADEVELNFKYV
Ga0170824_1011791851	3300031231	Forest Soil	MKLPPELEFHDDLRLLIYRPHGVIDEEAVKKVVDVLEDLEAKLQKPFNRFFDTLEADEVELNFKYVIQ
Ga0170820_151019732	3300031446	Forest Soil	MTLPPEIQFYQDIRLLVYRPHGLLNEAAFNKVLGALEDLEAKLQEPFDRFLDTLAADEVELNFKYIIQASLHRRLSYAGRPPVKSA
Ga0318552_106308802	3300031782	Soil	MKLPSDIEFHEDIRLLIYRPRGLVNEAALNKTLSALEDLEAKLEKPFDRFSDTLAADEVELNFNY
Ga0306919_104476031	3300031879	Soil	MKLPPEIEFHEDIRLLIYRPRGLLNEAAINRVLGALEDLEAKLQAPLDRFSDTLEADEVELNFKYIVQVS
Ga0306925_103051154	3300031890	Soil	MNKIQLPLDVEFHEDIRLLIWRPRGLLNEAAVSNVILALERLEVALQEPFNRLSDTLAADEVELNFEYIIQVSLQRRLSYAGRPPIRS
Ga0306925_107512742	3300031890	Soil	MKLPPDVEFHEDIHLFIHRPHGLLNEATINQVVSALGDLEAKLQEPFNRFADTLGADEVELNFKYVIQVSLH
Ga0310900_119286322	3300031908	Soil	MKLSPDVEFHDDISLLIYRPRGVIDEAAVQRVVDVLEDLEAKLQKPFNRFCDTLAADEVELNFKYVIQVSLC
Ga0308174_115070272	3300031939	Soil	MKLPPELEFHDDLHLLIYRPHGVIDEAAVKKVVDVLEDLEAKIQKPFNRFFDTLRADEDELNFKYVIQ
Ga0310913_112134181	3300031945	Soil	MNKIQLPLDVEFHEDIRLLIWRPRGLLNEAAVSNVILALERLEVALQEPFNRLSDTLAADEVELNFEYIIQVSLHRRLSYAGRPPIRSAILATDS
Ga0310911_102909512	3300032035	Soil	MNLPPELEFHEDIRLLIYRPRGVVDEAALNKTLSALEELEAKLEKPFDRFSDTLAADEVELN
Ga0318533_102058531	3300032059	Soil	MNNMNLLPELEFHEDIRLLIYRPRGLVNEAALNKTLSALEDLEAKLEKPFDRFSDTLAAD
Ga0306920_1006441603	3300032261	Soil	MKLPPELEFHEDIRLLIYRPRGLVNEAALNKTLSALEDLEAKLEKPFDRFSDTLAADEVELNFNYVIQFS
Ga0306920_1009145361	3300032261	Soil	MKLPPEIEFHEDIRLLVYRPHGLLDEAAINKVLGALEDLEAKLQAPFDRFSDTVEADEVELN
Ga0306920_1026126011	3300032261	Soil	MNKIQLPLDVEFHEDIRLLIWRPRGLLNEAAVSNVILALERLEVALQEPFNRLSDTLAADEVELNFEYIIQVSLHRRLS
Ga0310914_105015391	3300033289	Soil	MKLPPEIEFHEDIRLLIYRPRGLLNEAAINRVLGALEDLEAKLQAPLDRFSDTLEADEVELNFKYIVQVSLHRRLSYAGRPPVKS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100022

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences