Metagenome Family F100272

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100272
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	121 residues
Representative Sequence	MAFPPDHPKSDANAAGMPAGASAVTPAGAAPGGSAGGSGIPFTPPPPLADLVDERARRVPPGADTFLPRRHGDRTGLADQEHNPTTPLAMADLDTALSTFRESLLADVSRVIAAS
Number of Associated Samples	20
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	36.59 %
% of genes near scaffold ends (potentially truncated)	34.31 %
% of genes from short scaffolds (< 2000 bps)	34.31 %
Associated GOLD sequencing projects	12
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (89.216 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine (88.235 % of family members)
Environment Ontology (ENVO)	Unclassified (95.098 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Surface (saline) (100.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.68% β-sheet: 0.00% Coil/Unstructured: 78.32%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00665	rve	3.92
PF00078	RVT_1	1.96
PF00125	Histone	1.96
PF08240	ADH_N	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	3.92
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	3.92
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	3.92
COG4584	Transposase	Mobilome: prophages, transposons [X]	3.92

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.22 %
Rhodophyta	phylum	Rhodophyta	8.82 %
All Organisms	root	All Organisms	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.22 %
Bangiophyceae	class	Rhodophyta → Bangiophyceae	8.82 %
cellular organisms	root	All Organisms → cellular organisms	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.22 %
Bangiales	order	Rhodophyta → Bangiophyceae → Bangiales	8.82 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.22 %
Bangiaceae	family	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae	8.82 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.22 %
Porphyra	genus	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra	8.82 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.22 %
Porphyra umbilicalis	species	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	8.82 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	1.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004791\|Ga0068459_109497	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	2158	Open in IMG/M
3300005647\|Ga0079203_1160723	Not Available	643	Open in IMG/M
3300009072\|Ga0115030_1017197	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	2171	Open in IMG/M
3300009072\|Ga0115030_1050591	Not Available	907	Open in IMG/M
3300009072\|Ga0115030_1051092	Not Available	900	Open in IMG/M
3300009072\|Ga0115030_1058700	Not Available	810	Open in IMG/M
3300009072\|Ga0115030_1062447	Not Available	772	Open in IMG/M
3300009072\|Ga0115030_1074571	Not Available	676	Open in IMG/M
3300009072\|Ga0115030_1074742	Not Available	675	Open in IMG/M
3300009072\|Ga0115030_1076295	Not Available	665	Open in IMG/M
3300009072\|Ga0115030_1084796	Not Available	617	Open in IMG/M
3300009072\|Ga0115030_1107860	Not Available	520	Open in IMG/M
3300009072\|Ga0115030_1110788	Not Available	511	Open in IMG/M
3300009410\|Ga0114955_1002000	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	9284	Open in IMG/M
3300009410\|Ga0114955_1049952	Not Available	974	Open in IMG/M
3300009410\|Ga0114955_1059801	Not Available	840	Open in IMG/M
3300009410\|Ga0114955_1077084	Not Available	687	Open in IMG/M
3300009410\|Ga0114955_1110012	Not Available	524	Open in IMG/M
3300009417\|Ga0114953_1003394	All Organisms → cellular organisms → Eukaryota	10894	Open in IMG/M
3300009417\|Ga0114953_1046699	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1646	Open in IMG/M
3300009417\|Ga0114953_1110753	Not Available	754	Open in IMG/M
3300009417\|Ga0114953_1125849	Not Available	676	Open in IMG/M
3300009417\|Ga0114953_1125850	Not Available	676	Open in IMG/M
3300009417\|Ga0114953_1128311	Not Available	665	Open in IMG/M
3300009417\|Ga0114953_1164283	Not Available	544	Open in IMG/M
3300009417\|Ga0114953_1172215	Not Available	524	Open in IMG/M
3300027009\|Ga0209093_1017519	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1952	Open in IMG/M
3300027009\|Ga0209093_1037458	Not Available	817	Open in IMG/M
3300027009\|Ga0209093_1046879	Not Available	640	Open in IMG/M
3300027028\|Ga0209295_1059277	Not Available	707	Open in IMG/M
3300027262\|Ga0209303_1004943	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	5638	Open in IMG/M
3300027262\|Ga0209303_1062111	Not Available	835	Open in IMG/M
3300027325\|Ga0209186_1002888	All Organisms → cellular organisms → Eukaryota	12024	Open in IMG/M
3300027325\|Ga0209186_1041964	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1564	Open in IMG/M
3300027325\|Ga0209186_1081738	Not Available	776	Open in IMG/M
3300027325\|Ga0209186_1091079	Not Available	689	Open in IMG/M
3300027325\|Ga0209186_1092910	Not Available	673	Open in IMG/M
3300027325\|Ga0209186_1093932	Not Available	665	Open in IMG/M
3300027498\|Ga0209185_1029944	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1771	Open in IMG/M
3300027509\|Ga0209187_1095275	Not Available	751	Open in IMG/M
3300027623\|Ga0209828_1103802	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	925	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	91.18%
Environmental	Environmental	8.82%

Habitat	Taxonomy	Distribution
Algae	Host-Associated → Algae	91.18%
Aquatic	Environmental → Aquatic	8.82%

Habitat	Taxonomy	Distribution
Red Algae	Host-Associated → Algae → Red Algae	91.18%
Marine	Environmental → Aquatic → Marine	8.82%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Algae → Red Algae → Unclassified	91.18%
Unclassified	Environmental → Aquatic → Marine → Unclassified	8.82%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Algae → Red Algae → Unclassified → Unclassified	91.18%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	8.82%

Habitat	Taxonomy	Distribution
Marine	Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine	88.24%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	8.82%
Porphyra Umbilicalis	Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Porphyra Umbilicalis	2.94%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004791	Porphyra umbilicalis microbial communities from the coast of Maine, USA, in Atlantic Ocean	Host-Associated	Open in IMG/M
3300005647	Marine algae microbial communities from Bantry Bay - Bantry Bay, Ireland	Environmental	Open in IMG/M
3300005651	Marine algae microbial communities from Blueberry Hill - Blueberry Hill, Maine	Environmental	Open in IMG/M
3300005654	Porphyra Blade Metagenome Co-Assembly	Environmental	Open in IMG/M
3300009072	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male1 metaG	Host-Associated	Open in IMG/M
3300009073	Marine algal microbial communities from Bantry Bay, Ireland - BantryBay_4 metaG	Host-Associated	Open in IMG/M
3300009410	Marine algal microbial communities from Porto, Portugal - Porto_5 metaG	Host-Associated	Open in IMG/M
3300009415	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex1 metaG	Host-Associated	Open in IMG/M
3300009417	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male2 metaG	Host-Associated	Open in IMG/M
3300009421	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex2 metaG	Host-Associated	Open in IMG/M
3300009439	Marine algal microbial communities from Maine, USA - Maine_Asex4_metaG	Host-Associated	Open in IMG/M
3300026840	Marine algal microbial communities from Porto, Portugal - Porto_4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027009	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male1 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027028	Marine algal microbial communities from Porto, Portugal - Porto_5 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027262	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex1 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027325	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male2 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027498	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex2 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027509	Marine algal microbial communities from Bantry Bay, Ireland - BantryBay_4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027554	Marine algal microbial communities from Maine, USA - Maine_Asex4_metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027623	Marine algal microbial communities from Maine, USA - Maine_Asex2 metaG (SPAdes)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0068459_10055715	3300004791	Porphyra Umbilicalis	MASPPDLPKLDAIASGMPAGTSAVIPAVAATGGAVAGTGIPFTLPQPLADLVGGKVRRVSSGADAFPPRRHDERTGSVDQDQSSATPLAIDDLDTALLTFREPLLAEVSRAIAASPAGCAQIAPRRDSPVDTQKSRNKGC*
Ga0068459_1094971	3300004791	Porphyra Umbilicalis	MASPSDIPKSNAIASGMPADTSAVTPAVAATGGSAAGSGIPLTPPRPLADLVGETVRRVPPGAVAFLPRHHDERTGLVDQDRDPATPLAMADLDTALSTFRESLLADVS
Ga0068459_1160152	3300004791	Porphyra Umbilicalis	MASHPDLLKLDAIASGMPAGTSEVTSAVAATRESAGGSGIPFTSPRPLADLVSETVRWFPPGADALLPLRHDERTGLEDEGQGLATSLAMADLDTALSTFRESLLADVSRVIAASPAGSAQDVPR*
Ga0079203_10209416	3300005647	Marine	MASHPDLLKLDAIASGMPAGTSEVTSAVAATGESAGGSGIPFTSPRPLADLVSETVRWFPPGADALLPLRHDERTGLEDEGQGLATSLAMADLDTALSTFRESLLADVSRVIAASPAGSAQDVPR*
Ga0079203_10213027	3300005647	Marine	MTSSPDLAMLEAIASGMPAGTSAVNPAVAATGGSAGGSGISFTPPRPLADLVSKTVRRVLPGADAFLPRRHDERTGLVDQDRGSATPLAMADLDTALSTLRESLLTDVSQVIAASPAGSAQDPPCEIYPWTHGRATEREVTALL*
Ga0079203_11422141	3300005647	Marine	MASPSDIPKSNAIASGMPAGTSAVTPAVAATGGSAAGSGIPFTPPRPLADLVGEAVRRVPPGAGAFLPRRHDERTGLVDQDRDPATPLAMADLDTA
Ga0079203_11607232	3300005647	Marine	MASPTDNPKSNAIASGMPAGTSAVTPAVAATGGSAVGSGIPFTPPRPVADLVGETARRVPPGACAFLPRRHDERTGLVDQDRDPATPLAMADLDTALSTFRES
Ga0079202_101400431	3300005651	Marine	MASPPDLPKLDAIASGMPVGTSAVTPAVAATGRYAAGSGNPVTPLRPLADLVGETVRRVPPGADAFLSRRHDERTGLVGQDKGSASPLVMAELDTALSTF
Ga0079204_102272031	3300005654	Marine	MASPPDLPKLDAIASGMPVGTSAVTPAVAATGRYAAGSGNPVTPLRPLADLVGETVRRVPPGADAFLSRRHDERTGLVGQDKGSASPLVMAELDTALSTFRESLLADVSRVIAASPAGSAQDA
Ga0079204_102427812	3300005654	Marine	MASPSNIPKSNAIASGMLAGTSAVTPAVAATGGSAAGSEIPFTPPRPLADLVGEMVRRVPPGAGSFLPRRHDERTVLVDQDRDPATPVAMADLDTALSTLRESLLADVSRVIAASPAGSA
Ga0079204_104141751	3300005654	Marine	PKSNAIASGMPVGTSAVTPAVAATGGSAAGSGIPFTPPRPLADLLGETVRRVPPGAGAFLPRRQDERTGFVDQDRDPATPLAMADLDTALSTFRES*
Ga0079204_104232821	3300005654	Marine	MASPSDIPKSNAIASGMPAGTSAVTPAVAATGGSAAGSGIPFTPPRPLADLVGEAVRRVPPGAGAFLPRRHDERTGLVDQDRDPATPLAMADLDTALS
Ga0115030_10171971	3300009072	Marine	MASPPNLPKLDGTTSDMPAGTSAVTPAGAALGGSAGASGIPFTPPPPLADLVDENARRVPPGADTFLPRRQGDRTGLADQKHDPVTPLAMADLDTALSTFRESLLADVSRIIAASPAGSAQDAPRRDSPVDTRRAAEKGRHGVIVVPRRPRRLHLPRRHRRQLTTT*
Ga0115030_10505911	3300009072	Marine	MASPPDLPKLDATASDMPAGTSAVIPAGAAPGESAGGSGTPFTPPPPWEDFVDEKARRVPPGADTFLPRRHGDRTGLADQEHDPVTPLARADLDTALSTFRESFLADVSRVIAAIPAGSAQDAPRRDSPVDTRKSRRKGKTRRHRSPSPSSSSSS
Ga0115030_10510921	3300009072	Marine	MASPPDLPKLDGTASDMPAGTSAVTPAGAAPGESAGGSGILFTPPPPLEDLVNEKARRVPPGADTFLPRRHADRTGLADQEHDPVTPLAMADLDTAFSTFRESLLADVSRFIAASPAGSAQDAPRRDSPVDTRKSRRKGKTRRHRSPSPSSSSSS
Ga0115030_10587001	3300009072	Marine	MVFPPDHPKSDANAADMPAGTSTVTPASAAPGGSAGGSGIPFTPPPPLADLVDEIVRRVPPGGDTFPPRRHGDRTGLADQKHDPVTPLAMADLDTALSTFRESLLADVSRVTAASPAGSAQDAPRRDSPVDTRKSRSKGKTRRHRSPSPSSS
Ga0115030_10624471	3300009072	Marine	MAFPPDHPKSDANAADMPAGTSTVTPAGAATGGSAGGSGIPFTPPPPLADLVDEKVRRVPPGGDTFLPRRHGDRTGLADQEHDPVTPL
Ga0115030_10740942	3300009072	Marine	MAFPPDHPNSDANAADMPAGTSTVTPAGAAPGGSAGGSGIPFTPPPPLAELVDEKVRRVPPGGDTFLSRRHGDRTGLADQQHDPVTPLAMADLDTALSTFRESLLADVSRVIAASPAGSA
Ga0115030_10745122	3300009072	Marine	MAPPPNLPKLDATTTDMPAGTSAVTPAGAAPGGSAGGSGIPFTPPPPLADLVDKKERRVPLGADTFLPRRHGDRTGLADQEHNPATPHAMADLDTALSTFRESLLADVSRVIAASPAGSAQDAPRRDS
Ga0115030_10745711	3300009072	Marine	MAFPPDHPKLDATTSDMPAGTPAVTPAGVAPGGSAGESGIPLTPPPPLADLVDEKKRRVPLGADTFLPRRHGDRTGLADEEHNPATPLAMADLDTALSTFPESLLADVSRVIAASPAGSAQDAPRRDSPVDTRKSRSKGKTRRHRSPSPSS
Ga0115030_10747422	3300009072	Marine	MAFPPDHAKSDANAAGMPAGTSAVTPAGAAPGGCAGGSGIPFTPPPPLADLVDEKARRVPPGADTFLPRRHGDRTGLADQEHDPVT
Ga0115030_10762951	3300009072	Marine	MASPPSLPKMDATTSDMPAGTSAVTPAGVAPGESAGGSGIPFTPPPPLVDFVDEKERRVSLGADTLLPRRHGYRTGLADQEHNPTTPLTMADLDTALSTFRESLLADVSRVIAASPAGSAQDAPRRDSPVDT
Ga0115030_10847961	3300009072	Marine	MEFPPDHPKWDANAADMPAGTSTVTPAGAAPGGSAGGSGIPLTPPPPLADLVDEKVRRVPPGGNTFLPRRHGDRTGLADQEH
Ga0115030_10933641	3300009072	Marine	MALPPDHPKSDANAAGMPAGTSAVTPAGAAPGGSAGGSGIPFTPPPPLADLVDERARRAPPGADTFLPRRHGDRTGLADQEHNPTTPLAMADLDTALSTFR
Ga0115030_11078601	3300009072	Marine	MVFPPDHPKSDANAADMPAGTSTVTPAGAAPGGSAGALGIPFTPPPPLADLVDEKVRRVPPGADTFLPQRHGDRTGLADQEDDPVTPLAMADRDTALSTFRESLLADVSRVIAASPAGSAQDAPRRDSPVDTR
Ga0115030_11080361	3300009072	Marine	MAFPPDHPKSDANAAGMPAGASAVTPAGAARGGSAGGSGIPFTPPPPLADLVEENARRVPLGADTFLPRRHGDRTGLADQEHNPTTPLAMADLDTALSTFR
Ga0115030_11107881	3300009072	Marine	MAFPPDHPKSDANAVDMPAGTSTVTPAGAAPGGSAGGSGIPFTPPAPLADLVDAKVRRAPLGGNTFLPRRHGDRTGLADQEHDPVTPLAMADLDLALSTFRESLLADVSRVIAASPAGSAQDAPRRDSPVDTRKS
Ga0114957_10037819	3300009073	Marine	MTSPPDIPKSDEIASGMPAGTSAVTPAVAATVGSVARSGIPFNPPRPLADLVGETVRRVTPGAGAFLPRRQAERTGLMDRDRGSATPLVMADLDAALSMLRESLSADVSRVIAASPAGSAQDAPRQDSPVDTRKSRMCRRDILQSRHLA*
Ga0114957_100462417	3300009073	Marine	MTSSPDLAMLEAIASAMPAGTSAVNPAVAATGGSAGGSGISFTPPRPLADLVSKTVRRVLPGADAFLPRRHDERTGLVDQDRGSATPLAMADLDTALSTLRESLLTDVSQVIAASPAGSAQDPPCEIYPWTHGRATEREVTALL*
Ga0114957_10067361	3300009073	Marine	MASLPDLPKLDAIASGMPAGPPAVTAAVAATEGSAAGSGLPFTPPRPLADLVGEAVRRVPPGADAFLPRRHDERTGLVDQGRGSATPLALADLYTALSTFRKSLFADVSRFIAASPAGSAEGAPR*
Ga0114955_10020002	3300009410	Marine	MMASPPNLPKLDATTSEMPAGPSAVTPAGAAPGGSAGGSGIQSTPPPPLADLVDEKARRVPAGADTLLPGRHGDWTGLENQKHNPVTPLAMANLDTALSTFRESLLADVSRVIAASPAGSAQDAPRRDSRVDTRKSRS*
Ga0114955_100399012	3300009410	Marine	MASPPDPSKLDANASGMPADTSAVTPAVAAPGESARGLGIPFTRPRPLADLVGETARRVPPGAETFLPRRHDDRTGLADQEQNPVTPLAMADLDTALSTFRESLLADVSRVIAVSPAGSAQDAPRRDSPMDTGETPWPRSFGLKSRDR*
Ga0114955_10499521	3300009410	Marine	MAFPPDHAKSDANAADMPAGTSTVTPAGAAPGGSACGSGIPFTPPPPLADLVDEKVRRVSPGGNTFLPRRHGDRTGLADQEHDAVTHLAMADLDTALSTFRESLLADVSRVIAASPAGSAQDAPRRD
Ga0114955_10598011	3300009410	Marine	MASPPNLPKLYATTSDMPAGTSAVTPAGAAPGGSAGGSGIPFTPPPPLADLVDEKARWVPQGADTFLPRLHGDRTGLADQEHDPVTPPAMADLDTALSTFRESLMADISRVIAASPARSAQNAPRRDPPVDTRKS
Ga0114955_10614951	3300009410	Marine	MEFPPDHPKWDANAAGMPAGTSTVTPAGAAPGGSAGGSGIPLTPPPPLADLVDEKVRRVPPGGNTFLPRRHGDRT
Ga0114955_10770841	3300009410	Marine	MPAGTSAVTPAGAAPGGSAGGSGIPFTSPPPLADLVDEKVRRVPPGADTFLPRRHFDRTGLADQEHDPVTPLAMADLDTALSTFRESLLADVSRV
Ga0114955_10774612	3300009410	Marine	MAFPPDHPKSDANAAGMPAGASAVTPAGAAPGGSAGRSGIPFTPPPPLADLVDAKTRRAPPRADTFLPRRHGDRTGLADQEHDPVTPLAMADLDTALSTFRESLLADVSRVIAASPAGSAQDAPRRDS
Ga0114955_10925491	3300009410	Marine	MAFPPDHPKSDANAADMPAGTSTVTPAGAAPGASAGGSGIPFTPPPPLADLVDEKVRRVPPGGDTFLPRRHGDRTGLADQEHDPVTPLAMADLDTALSTFRESLLADVS
Ga0114955_10970301	3300009410	Marine	MAFPPDHPKSDANAADMPAGTSTVTPGGAAPGGSAGGSRIPFTPPPPLADLVDEKVRRVPLGGNTFFPRRHGDRTRLADQEHDPVTPLAMADLDTALSTFRESLLADVS
Ga0114955_11086031	3300009410	Marine	MVFPPDHPKSDANAADMPAGTSTVTPAGAVPGGSAGGSGIPFTPPPPLADLVDEKVRRVPPGADTFLPRRHGDRTGLADQEHD
Ga0114955_11100121	3300009410	Marine	MAFPPDHPKSDANAADMPACTSTVTPAGAAPGGSAGGSGIPFTPPPPLADLVDEKERRVTLGGNTFLPRRHGDRTGLADREHDPVTPLAVADLDTALSTFRESLLADVSRVIAASPAGSAQDAPRRDSPV
Ga0114955_11173221	3300009410	Marine	MAFPPDHPKSDAKAADLPAGTSTVTPAGAAPGGFAGGSGIRFTPPPPLADLVEEKVRQVPPGGNTFLPRRHGDRTGLADQEHDPVTPLAMADLDTALSTFRESLLADVS
Ga0115029_11184332	3300009415	Marine	MASPPDLPQLDAITSGMPAGTSAVTPAVAATGGSAAESGIPFTPPRPLADLVGDTVRRVPPGAEAFLPRRHDERTGLVDQHRDPATPLAMADLDTALSTFRESLLADVSRVIAASPAGSAQDSPRR
Ga0114953_100339413	3300009417	Marine	MASPPDPFKLDANASGMPAGTSAVTPAVAAPGESARGSGIPFTPPRPLADLVGETARRVPPGADTFLPRRHDDRTGLADKEHNPVTPLAMADLDTALSTFRESLLADASRVIAVSPTGSAQDAPRRYSPMDTGETPWPRSFGLKSRDR*
Ga0114953_10466991	3300009417	Marine	MAFPPDHPKSDANAADMPAGTSTVTPAGAAPGGSAGGSGIPFAPPPPLADLVDEKVQRVPPGGNTFLPGGHGDRTGLADQEHDPVTPLAMADLDTALSTFREALSADVSRVIAASPAGSAQDAPRRDSPVDTRKSRSKGKTRRHRSPSPSSSS
Ga0114953_11107531	3300009417	Marine	MASPPNLPKLDATARDMPAGTSTLTPAGAAPGGSAGGSGIPFTPPPPLADLVDEKARRVPPGADTFLPRRHGDRTGLADQEHDLVTPLALADLDTALSTFRESLLADVSRVIAASPAGSAQDAPRRDSPVDTRKSRSKGKTR
Ga0114953_11258491	3300009417	Marine	MAFPPDNPKSDANAADMPAGTSTVTPAGAAPGGSAGGSGIPLTPPPPLADLVDEKVRRVPPGVNTFLLRRHGDRTGLADQEHNPATPLAMEDLDTALSKFPESLLADVSRIIAASPAGSAQDAPRRDSPVDTRKSRSKGKTRRHRSPSPSS
Ga0114953_11258501	3300009417	Marine	MAFPPDHPKLDATTSDMPAGTPAVTPAGAAPGGSAGESGIPLTPPPPLADLVDEKKRRVPLGADTFLPRRHGDRTGLADEEHNPATPLAMADLDTALSTFPESLLADVSRVIAASPAGSAQDAPRRDSPVDTRKSRSKGKTRRHRSPSPSS
Ga0114953_11283111	3300009417	Marine	MASPPSLPKLDATTSDMPAGTSAVTPAGVAPGESAGGSGIPFTPPPPLVDFVDEKERRVSLGADTLLPRRHGYRTGLADQEHNPTTPLTMADLDTALSTFRESLLADVSRVIAASPAGSAQDAPRRDSPVDT
Ga0114953_11642831	3300009417	Marine	ATTSAMPAGTSAVTPAGAAPGGSAGGSGIPFTPPPPLADLVDEKARRVPLGADTFLPRRHGGGTGLADQEHDPAAPLAMADLDTALSTFRESLLADVSRVSRRAQQAPLKMPHAGIPPWTRGRAAAKGRRGVIVVPRLPRRLHLPRRHRRQPTTTKTAWGPRRVPASWRSSSVRTIASRA
Ga0114953_11722151	3300009417	Marine	MAFPPDHPKSVANAADMPAGKTTVTPAGAAPGGSAGGSGIPFTPPPPLADLVDEEVRRVPQGGNTFLPRRHGDRTGLADQAHDPVTPLATADLDTALPTFRESLLADVSRVIAASPAGSAQDAPRRDSPVDTRKSRSK
Ga0114953_11811661	3300009417	Marine	MAFPPDHPKSDANAADMPAGTSTVTPQGAAPGGSAGGSGIPFTPPPPLADLVDEKVRRVPLGGNTFLPRRHGDRTGSADQEHDPVTPLAM
Ga0114952_11232881	3300009421	Marine	MASPPDIAKSDAIASGMPAGTSAVTPAVVATGESAAGSRIPFTPPRPLADLVGETVQRVPPGADAFPHRRHDEWTGLVDQDRGSATPLAMADLDTALSTFRESLLADVSRVMAASPA
Ga0114952_11746152	3300009421	Marine	MASPPDLPKLDAIASGMPAGTSAVTPAVAATGGAVAGTGIPFTLPQPLADLVGGNVRRVSSGADAFPPRRHDERTGSVDQDQSSATPLAIDDLDTALLTFREPLLAEVSRAIAGSPAGCAQIA
Ga0115031_100567310	3300009439	Marine	MASLPDLPKLDAIASGMPAGPPAVTAAVAATEGSAAGSGLPFTPPRPLADLVGEAVRRVPPGADAFLPRRHDERTGLVDQGRGSATPLALADLYTALSTFRESLFADVSRFIAASPAGSAEGAPR*
Ga0115031_11450911	3300009439	Marine	MASPPDIPKSDAIASGMPAGTSAVTPAVAATEGSTAGSGIPFTPPRPLADLVGETVRRVPPGADAFLPRRHDERTGLVDQDRDPATPLAMADLDTALSTFR
Ga0209595_1256481	3300026840	Marine	MPAGTSAMTPAGAAPGESAGGSGIFFTSPPPLEDLVDEKARRVPAGADAFLPRRHCDRTRLADQEHDL
Ga0209093_100254114	3300027009	Marine	MAFPPDHPKSDANAADMPAGTSTVTPAGAATGGSAGGSGIPFTPPPPLADLVDEKVRRVPPGGDTFLPRRHGDRTGLADQEHDPVTPLA
Ga0209093_10175191	3300027009	Marine	MASPPNLPKLDGTTSDMPAGTSAVTPAGAALGGSAGASGIPFTPPPPLADLVDENARRVPPGADTFLPRRQGDRTGLADQKHDPVTPLAMADLDTALSTFRESLLADVSRIIAASPAGSAQDAPRRDSPVDTRRAAEKGRHGVIVVPRRPRRLHLPRRHRRQLTTT
Ga0209093_10374582	3300027009	Marine	MVFPPDHPKSDANAADMPAGTSTVTPASAAPGGSAGGSGIPFTPPPPLADLVDEIVRRVPPGGDTFPPRRHGDRTGLADQKHDPVTPLAMADLDTALSTFRESLLADVSRVTAASPAGSAQDAPRRDSPVDTRKSRSKGKTRRHRSPSPSSSS
Ga0209093_10427952	3300027009	Marine	MAFPPDHPNSDANAADMPAGTSTVTPAGAAPGGSAGGSGIPFTPPPPLAELVDEKVRRVPPGGDTFLSRRHGDRTGLADQQHDPVTPLAMADLDTALSTFRESLLADVSRVIAASPAGSAQD
Ga0209093_10440712	3300027009	Marine	MASPPSLPKLDANAAGIPAGTSAVTTAGAAPGGSAGGSGIPFTPPPPLADLVDEKVRRVPPGADTFLPRRHGDWTGLADQEHDPVTPLAMADLDTALSTFRESLLADVSRVIAAS
Ga0209093_10462612	3300027009	Marine	MAFPPDHPKSDANAAGMPAGASAVTPAGAAPGGSAGGSGILFTPPPPLADLVDEKARRVPPGADTVIPRRHGDRTGLADQEHDPVTPLAMADLDTALSTFRESLLADV
Ga0209093_10464041	3300027009	Marine	MAFPLDHPKSDANAADMPAATSTVTPAGAAPGGSAGGSGIPFIPPPPLADLVDEKVRRVPPGRDTFLPRRHGDRTGLAGQEHDPVTPLAMADLDTALSTFRESLLADVSRVIAASPAGSA
Ga0209093_10468792	3300027009	Marine	MEFPPDHPKWDANAADMPAGTSTVTPAGAAPGGSAGGSGIPLTPPPPLADLVDEKVRRVPPGGNTFLPRRHGDRTGLADQEHD
Ga0209093_10512042	3300027009	Marine	MAFPPDSKSDANAAGMPAGTSAVTPAGAAPGGSAGGSGITFTPPPPLADLVDEKARRVPPGAHTFLPRRHGDRTGLADQEHNPTTPLAMADLDTALSTFRESLL
Ga0209093_10555571	3300027009	Marine	MAFPPDHPKSDANAADMPAGTSAVTPAGAAPGGSAGGSGIPFNTPPPLADLVDEKVRRVPPGGDTFLPRRHGDRTGLADQEHDPVTPLA
Ga0209295_10103282	3300027028	Marine	MLAGTSAVTPAVAGTGEAAGGSGILFTPPPPLADLAGEAGRRAPPGANAFLPRRQDDRAGSADQGQDPVTPLAMADLDTALSTFGESLLADVSQVIVASPAGPAQDAPRRSSP
Ga0209295_10137222	3300027028	Marine	MASPPDPSKLDANASGMPADTSAVTPAVAAPGESARGLGIPFTRPRPLADLVGETARRVPPGAETFLPRRHDDRTGLADQEQNPVTPLAMADLDTALSTFRESLLADVSRVIAVSPAGSAQDAPRRDSPMDTGETPWPRSFGLKSRDR
Ga0209295_10293182	3300027028	Marine	MAFPPDHPKSDANAADMPAGTSTVTPAGAAPGGSAGGSGIPFTPPPPLADLVDEKVRRVPLGGNTFLPRRHGDRTGSADQEHDPVTPLAMADLDTALSTFRESLLAD
Ga0209295_10592771	3300027028	Marine	MESPPNLPKLGATTSDTPAGTSAVTPAGAAPGGSAGGSGILVTPPPPLADLVDEKARRVPPGADTFLPRRHCDRTGLADQEHDPATPIAMADLDTALSTFRESLLVDVSRVITASPAGSAQDAPRRDSPVDTRKSRSKGKTRPHRSPSP
Ga0209295_10794901	3300027028	Marine	MAFPPDHPKSDANAANMPAGTSEVTPAGAAPGGSAGGSGIPFTPPPPLADLVDEKVRRVPPGGNTFLP
Ga0209303_10028411	3300027262	Marine	MASLPDLPKLDAIASGMPAGPPAVTAAVAATEGSAAGSGLPFTPPRPLADLVGEAVRRVPPGADAFLPRRHDERTGLVDQGRGSATPLALADLYTALSTFRKSLFADVSRFIAASPAGSAEGAPR
Ga0209303_10049432	3300027262	Marine	MASPPDIPKSDAIASGMPAGTSPVTPEVAATGGSAAGSGIPFTPPRPFADLVGETVRRVPPGADAFLPRRHDERTGLVDQDRGLTTPVAMADLDTALSTFRESLFADVSRVIAASPAGSAQDAPRRDSHVDTRKSRSKGKSRRRR
Ga0209303_10097471	3300027262	Marine	MASHPDLLKLDAIASGMPAGTSEVTSAVAATGESAGGSGIPFTSPRPLADLVSETVRWFPPGADALLPLRHDERTGLEDEGQGLATSLAMADLDTALSTFRESLLADVSRVIAASPAGSAQDVPR
Ga0209303_10212181	3300027262	Marine	MLEAIASGMPAGTSAVNPAVAATGGSAGGSGISFTPPRPLADLVSKTVRRVLPGADAFLPRRHDERTGLVDQDRGSATPLAMADLDTALSTLRE
Ga0209303_10621111	3300027262	Marine	MASPSDIPKSDAIASGMPAGTSAVTPAVAATGGSAAGSGIPFTSPRPLADLVGETVRRVPPGAGAFLPRRRDERTGLVDQDRDPATPLAMADLDTALSTFRDSFLADVSRVIAASPAGSAQDAP
Ga0209303_10970172	3300027262	Marine	MASPSDIPKSNAIASGMPAGTSAVNPAVAATGGSAAGSGIPFTLPRPLADLVGETVRRVPPGAGAFLPRRHDERTGLVDQDRDQATPLAMADLDTAL
Ga0209186_100065936	3300027325	Marine	MMAFPPDNPKSDANAAGMPAGASAVTPAGAAPGGSAGGSGIPFTPPPPLADLVDEKTRRAPPRTDTFLPRRHGDRTGLADQEHDPVTPLAMADLDTALSTFRESL
Ga0209186_10028886	3300027325	Marine	MASPPDPFKLDANASGMPAGTSAVTPAVAAPGESARGSGIPFTPPRPLADLVGETARRVPPGADTFLPRRHDDRTGLADKEHNPVTPLAMADLDTALSTFRESLLADASRVIAVSPTGSAQDAPRRYSPMDTGETPWPRSFGLKSRDR
Ga0209186_10152206	3300027325	Marine	MAFPPDHPKSDANAAGMPAGASAVTPAGAAPGGSAGGSGIPFTPPPPLADLVDERARRVPPGADTFLPRRHGDRTGLADQEHNPTTPLAMADLDTALSTFRESLLADVSRVIAAS
Ga0209186_10419641	3300027325	Marine	MAFPPDHPKSDANAADMPAGTSTVTPAGAAPGGSAGGSGIPFAPPPPLADLVDEKVQRVPPGGNTFLPGGHGDRTGLADQEHDPVTPLAMADLDTALSTFREALSADVSRVIAASPAGSAQDAPRRDSPVDTRKSRSKGKTRRHRSPS
Ga0209186_10429562	3300027325	Marine	MAFPPDHPKSDANAADMPAGTSTVTPAGAATGGSAGGSGIPFTPPPPLADLVDEKVRRVPPGGNTLLPRRHGERTGLADQEHDPVTPLAMADLDTALSTFRESLLADVS
Ga0209186_10654171	3300027325	Marine	MAFPPDHAKSDANAAGMPAGTSAVTPAGAAPGGCAGGSGIPFTPPPPLADLVDEKARRVPPGADTFLPRRHGDRTGLADQEH
Ga0209186_10817381	3300027325	Marine	MAFPPDHPKSDANAACMPAGASAVTPAGAAPGGSAGGSGIPFTPPPPLANLVDERARRVPPGADTFLPRRHGDWTGLADQEHNPTTPLAMADLDTALSTFRESLLADVSRVIAAS
Ga0209186_10910791	3300027325	Marine	MATTMASPPNLLKLDATTSNMPAGTSAVTPAGAAPGGSAGGSGIPFTPPPPLADVVDEKARRVPPGADTFLPRRHGDRTGLADQEDDLVTPLAMADLDTALSTFRESLLADVSRVIAASPAGSAQDAPRRDSPVDTRKSRSKGK
Ga0209186_10923652	3300027325	Marine	MAFPPDHPNSDANAADMPAGTSTVTPAGAAPGGSAGGSGIPFTPPPPLAELVDEKVRRVPPGGDTFLSRRHGDRTGLADQQHDPVTPLAMADLDTALSTFRESLLADVSRVIAASPAGS
Ga0209186_10929101	3300027325	Marine	MASPPSLPKLDATTSDMPAGTSAVTPAGVAPGESAGGSGIPFTPPPPLVDFVDEKERRVSLGADTLLPRRHGYRTGLADQEHNPTTPLTMADLDTALSTFRESLLADVSRVIAASPAGSAQDAPRRDSPVDTR
Ga0209186_10939321	3300027325	Marine	MAFPPDHPKLDATTSDMPAGTPAVTPAGAAPGGSAGESGIPLTPPPPLADLVDEKKRRVPLGADTFLPRRHGDRTGLADEEHNPATPLAMADLDTALSTFPESLLADVSRVIAASPAGSAQDAPRRDSPVDTRKSRSKGKTRRHRS
Ga0209186_11034781	3300027325	Marine	MASPPSLPKLDANAAGIPAGTSAVTTAGAAPGGSAGGSGIPFTPPPPLADLVDEKVRRVPPGADTFLPRRHGDWTGLADQEHDPVTPLAMAD
Ga0209186_11185761	3300027325	Marine	MAFPPDHPKSDANAADMPAGTSTVTPQGAAPGGSAGGSGIPFTPPPPLADLVDEKVRRVPLGGNTFLPRRHGDRTGSA
Ga0209185_10299442	3300027498	Marine	WFVSSRRRGSPRRSVVDYRPATTMASPSDIPKSNAIASGMLAGTSAVTPAVAATGGSAAGSGIPFTPPRPLADLVGEMVRRVPPGAGSFLPRRHDERTVLVDQDRDPATPVAMADLDTALSTLRESLLADVSRVIAASPAGSA
Ga0209185_11206992	3300027498	Marine	MASPPDIAKSDAIASGMPAGTSAVTPAVVATGESAAGSRIPFTPPRPLADLVGETVQRVPPGADAFPHRRHDEWTGLVDQDRGSATPLAMADLDTALSTFRE
Ga0209187_100398718	3300027509	Marine	MTSSPDLAMLEAIASAMPAGTSAVNPAVAATGGSAGGSGISFTPPRPLADLVSKTVRRVLPGADAFLPRRHDERTGLVDQDRGSATPLAMADLDTALSTLRESLLTDVSQVIAASPAGSAQDPPCEIYPWTHGRATEREVTALL
Ga0209187_10046307	3300027509	Marine	MTSPPDIPKSDEIASGMPAGTSAVTPAVAATVGSVARSGIPFNPPRPLADLVGETVRRVTPGAGAFLPRRQAERTGLMDRDRGSATPLVMADLDAALSMLRESLSADVSRVIAASPAGSAQDAPRQDSPVDTRKSRMCRRDILQSRHLA
Ga0209187_10446921	3300027509	Marine	MAFPPDHPKSDANAAGMPAGTSAVIPAVVATGESAGGSGIPFTPPPPLADLVGETVRRVPPGANAFLPRRTDDRTGLEDQEQDPVTPLAMADLDTALS
Ga0209187_10952751	3300027509	Marine	MASPTDIPKSNAIASGMPAGTSAVTPAVAATGGSAVGSGIPFTPPRPVADLVGETARRVPPGACAFLPRRHDERTGLVDQDRDPATPLAMADLDTALSTF
Ga0209831_100591412	3300027554	Marine	MASLPDLPKLDAIASGMPAGPPAVTAAVAATEGSAAGSGLPFTPPRPLADLVGEAVRRVPPGADAFLPRRHDERTGLVDQGRGSATPLALADLYTALSTFRESLFADVSRFIAASPAGSAEGAPR
Ga0209831_10223643	3300027554	Marine	MASPSDIPKSNAIASGMPAGTFAVTPAVAATGGSASGSGIPFTSPRPLADLVSEKVCRVPPGAGAFLPRRHDERTGLVDQDRHPTTPLAMADLDTALSTFRESFLAEVSRVIAASPAGSA
Ga0209828_10294474	3300027623	Marine	MASPPDIPKSDAIASRMPAGTSAVIQAVAAKGGSAAGAGIPITPPRPLADLVGETVRRVPPGADAILPRRHDERTALVDRDRGSATPLAMADLDTALSTFRESLLADVSRVIAASPAGSAQDAPRRGSPVDTRKSRSK
Ga0209828_10879231	3300027623	Marine	MASPPDLPKLDAIASGMPAGTSAVIPAVAATGGAVAGTGIPFTLPQPLADLVGGNVRRVSSGADAFPPRRHDERTGSVDQDQSSATPLAIDDLDTALLTFREPLLAEVSRAIAASPAGCAQIAPRRDSPVDTQKSRNKGC
Ga0209828_11038021	3300027623	Marine	MASPPDIPKSGAIASGMPAGTSAVTPAGAATGGSAAGSEIPFTPPRPLADLVGETVRRVPPGVDAFLPRRHDERTGLVDQDRDPATPLAMADLDTALSTFRESLLADVSR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F100272

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences