Metagenome Family F100273

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100273
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	48 residues
Representative Sequence	IVLRTVLASEYNHPGDRRHRLSERVRKIDLDSCLKDSIVDDSLDYFE
Number of Associated Samples	19
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bangiales
% of genes with valid RBS motifs	51.55 %
% of genes near scaffold ends (potentially truncated)	50.98 %
% of genes from short scaffolds (< 2000 bps)	59.80 %
Associated GOLD sequencing projects	11
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bangiales (74.510 % of family members)
NCBI Taxonomy ID	29216
Taxonomy	Rhodophyta → Bangiophyceae → Bangiales

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine (53.922 % of family members)
Environment Ontology (ENVO)	Unclassified (66.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Surface (saline) (100.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.02% β-sheet: 0.00% Coil/Unstructured: 82.98%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF03221	HTH_Tnp_Tc5	2.94
PF00125	Histone	2.94
PF00078	RVT_1	1.96
PF14223	Retrotran_gag_2	0.98
PF13359	DDE_Tnp_4	0.98
PF02902	Peptidase_C48	0.98
PF01094	ANF_receptor	0.98
PF00385	Chromo	0.98
PF00069	Pkinase	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.92
COG0683	ABC-type branched-chain amino acid transport system, periplasmic component	Amino acid transport and metabolism [E]	0.98
COG5160	Protease, Ulp1 family	Posttranslational modification, protein turnover, chaperones [O]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Rhodophyta	phylum	Rhodophyta	74.51 %
Unclassified	root	N/A	19.61 %
All Organisms	root	All Organisms	5.88 %

Name	Rank	Taxonomy	Distribution
Bangiophyceae	class	Rhodophyta → Bangiophyceae	74.51 %
Unclassified	root	N/A	19.61 %
cellular organisms	root	All Organisms → cellular organisms	5.88 %

Name	Rank	Taxonomy	Distribution
Bangiales	order	Rhodophyta → Bangiophyceae → Bangiales	74.51 %
Unclassified	root	N/A	19.61 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	4.90 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Bangiaceae	family	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae	74.51 %
Unclassified	root	N/A	19.61 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	4.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Porphyra	genus	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra	74.51 %
Unclassified	root	N/A	19.61 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	4.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Porphyra umbilicalis	species	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	74.51 %
Unclassified	root	N/A	19.61 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	4.90 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.98 %

Name	Rank	Taxonomy	Distribution
Porphyra umbilicalis	species	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	74.51 %
Unclassified	root	N/A	19.61 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	4.90 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.98 %

Name	Rank	Taxonomy	Distribution
Porphyra umbilicalis	species	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	74.51 %
Unclassified	root	N/A	19.61 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	4.90 %
Undibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Undibacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Porphyra umbilicalis	species	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	74.51 %
Unclassified	root	N/A	19.61 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	4.90 %
Undibacterium fentianense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Undibacterium → Undibacterium fentianense	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004791\|Ga0068459_100845	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	19913	Open in IMG/M
3300004791\|Ga0068459_101695	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	12976	Open in IMG/M
3300004791\|Ga0068459_102696	Not Available	8360	Open in IMG/M
3300004791\|Ga0068459_104461	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	5410	Open in IMG/M
3300004791\|Ga0068459_105125	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	4631	Open in IMG/M
3300004791\|Ga0068459_105270	All Organisms → cellular organisms → Eukaryota	4410	Open in IMG/M
3300004791\|Ga0068459_110078	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	2023	Open in IMG/M
3300004791\|Ga0068459_111722	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1674	Open in IMG/M
3300005647\|Ga0079203_1014023	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	4095	Open in IMG/M
3300005647\|Ga0079203_1034882	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	2171	Open in IMG/M
3300005647\|Ga0079203_1042858	Not Available	1855	Open in IMG/M
3300005647\|Ga0079203_1053711	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1554	Open in IMG/M
3300005647\|Ga0079203_1062885	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1372	Open in IMG/M
3300005647\|Ga0079203_1079632	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1135	Open in IMG/M
3300005647\|Ga0079203_1093026	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1001	Open in IMG/M
3300005647\|Ga0079203_1093808	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	994	Open in IMG/M
3300005647\|Ga0079203_1097390	Not Available	964	Open in IMG/M
3300005647\|Ga0079203_1111491	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	863	Open in IMG/M
3300005647\|Ga0079203_1112163	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	859	Open in IMG/M
3300005647\|Ga0079203_1115069	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	841	Open in IMG/M
3300005647\|Ga0079203_1120897	Not Available	809	Open in IMG/M
3300005647\|Ga0079203_1123143	Not Available	797	Open in IMG/M
3300005647\|Ga0079203_1140638	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	716	Open in IMG/M
3300005647\|Ga0079203_1166912	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	624	Open in IMG/M
3300005647\|Ga0079203_1169990	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	615	Open in IMG/M
3300005647\|Ga0079203_1178491	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	592	Open in IMG/M
3300005651\|Ga0079202_10018977	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	2834	Open in IMG/M
3300005651\|Ga0079202_10027992	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	2272	Open in IMG/M
3300005651\|Ga0079202_10030223	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	2173	Open in IMG/M
3300005651\|Ga0079202_10062115	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1402	Open in IMG/M
3300005651\|Ga0079202_10114395	Not Available	925	Open in IMG/M
3300005651\|Ga0079202_10127177	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	857	Open in IMG/M
3300005651\|Ga0079202_10129015	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	848	Open in IMG/M
3300005651\|Ga0079202_10165804	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	703	Open in IMG/M
3300005651\|Ga0079202_10177493	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	668	Open in IMG/M
3300005651\|Ga0079202_10180581	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	659	Open in IMG/M
3300005651\|Ga0079202_10193653	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	626	Open in IMG/M
3300005651\|Ga0079202_10198782	Not Available	613	Open in IMG/M
3300005651\|Ga0079202_10209591	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	588	Open in IMG/M
3300005651\|Ga0079202_10237660	Not Available	534	Open in IMG/M
3300005654\|Ga0079204_10067485	Not Available	1841	Open in IMG/M
3300005654\|Ga0079204_10109554	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1336	Open in IMG/M
3300005654\|Ga0079204_10182927	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	931	Open in IMG/M
3300005654\|Ga0079204_10212926	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	834	Open in IMG/M
3300005654\|Ga0079204_10356092	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	573	Open in IMG/M
3300009072\|Ga0115030_1000842	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	13385	Open in IMG/M
3300009072\|Ga0115030_1009803	All Organisms → cellular organisms → Eukaryota	3428	Open in IMG/M
3300009072\|Ga0115030_1014879	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	2453	Open in IMG/M
3300009072\|Ga0115030_1067596	Not Available	728	Open in IMG/M
3300009072\|Ga0115030_1101223	Not Available	544	Open in IMG/M
3300009073\|Ga0114957_1004066	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	12809	Open in IMG/M
3300009073\|Ga0114957_1012766	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	5703	Open in IMG/M
3300009073\|Ga0114957_1021469	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	3743	Open in IMG/M
3300009073\|Ga0114957_1041831	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	2160	Open in IMG/M
3300009073\|Ga0114957_1091173	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1143	Open in IMG/M
3300009073\|Ga0114957_1153916	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	746	Open in IMG/M
3300009073\|Ga0114957_1158006	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	730	Open in IMG/M
3300009415\|Ga0115029_1003319	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	8832	Open in IMG/M
3300009415\|Ga0115029_1007555	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	5198	Open in IMG/M
3300009415\|Ga0115029_1035600	Not Available	1744	Open in IMG/M
3300009415\|Ga0115029_1075613	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	995	Open in IMG/M
3300009415\|Ga0115029_1079511	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	962	Open in IMG/M
3300009415\|Ga0115029_1089842	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	884	Open in IMG/M
3300009415\|Ga0115029_1131903	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	682	Open in IMG/M
3300009415\|Ga0115029_1136118	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	668	Open in IMG/M
3300009415\|Ga0115029_1171049	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	577	Open in IMG/M
3300009421\|Ga0114952_1103276	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	993	Open in IMG/M
3300009421\|Ga0114952_1111539	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	941	Open in IMG/M
3300009421\|Ga0114952_1233135	Not Available	564	Open in IMG/M
3300009439\|Ga0115031_1001921	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	15340	Open in IMG/M
3300009439\|Ga0115031_1046556	Not Available	2177	Open in IMG/M
3300009439\|Ga0115031_1150322	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	863	Open in IMG/M
3300009439\|Ga0115031_1169069	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	787	Open in IMG/M
3300009439\|Ga0115031_1195786	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	703	Open in IMG/M
3300009446\|Ga0114956_1129330	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1162	Open in IMG/M
3300009446\|Ga0114956_1213705	Not Available	822	Open in IMG/M
3300027009\|Ga0209093_1000665	All Organisms → cellular organisms → Eukaryota	19124	Open in IMG/M
3300027009\|Ga0209093_1001259	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	14384	Open in IMG/M
3300027028\|Ga0209295_1004685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Undibacterium → Undibacterium fentianense	4681	Open in IMG/M
3300027028\|Ga0209295_1026178	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1518	Open in IMG/M
3300027262\|Ga0209303_1004267	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	6295	Open in IMG/M
3300027262\|Ga0209303_1009147	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	3588	Open in IMG/M
3300027325\|Ga0209186_1001596	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	16603	Open in IMG/M
3300027325\|Ga0209186_1017769	All Organisms → cellular organisms → Eukaryota	3465	Open in IMG/M
3300027498\|Ga0209185_1048261	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1227	Open in IMG/M
3300027509\|Ga0209187_1010365	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	5322	Open in IMG/M
3300027509\|Ga0209187_1032279	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	2013	Open in IMG/M
3300027554\|Ga0209831_1010124	All Organisms → cellular organisms → Eukaryota	6139	Open in IMG/M
3300027554\|Ga0209831_1010302	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	6061	Open in IMG/M
3300027554\|Ga0209831_1014981	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	4561	Open in IMG/M
3300027554\|Ga0209831_1031580	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	2460	Open in IMG/M
3300027554\|Ga0209831_1094751	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	925	Open in IMG/M
3300027554\|Ga0209831_1128830	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	707	Open in IMG/M
3300027623\|Ga0209828_1041645	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1789	Open in IMG/M
3300027623\|Ga0209828_1076064	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1158	Open in IMG/M
3300027623\|Ga0209828_1080167	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1114	Open in IMG/M
3300027623\|Ga0209828_1109122	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	892	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	61.76%
Environmental	Environmental	38.24%

Habitat	Taxonomy	Distribution
Algae	Host-Associated → Algae	61.76%
Aquatic	Environmental → Aquatic	38.24%

Habitat	Taxonomy	Distribution
Red Algae	Host-Associated → Algae → Red Algae	61.76%
Marine	Environmental → Aquatic → Marine	38.24%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Algae → Red Algae → Unclassified	61.76%
Unclassified	Environmental → Aquatic → Marine → Unclassified	38.24%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Algae → Red Algae → Unclassified → Unclassified	61.76%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	38.24%

Habitat	Taxonomy	Distribution
Marine	Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine	53.92%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	38.24%
Porphyra Umbilicalis	Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Porphyra Umbilicalis	7.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004791	Porphyra umbilicalis microbial communities from the coast of Maine, USA, in Atlantic Ocean	Host-Associated	Open in IMG/M
3300005647	Marine algae microbial communities from Bantry Bay - Bantry Bay, Ireland	Environmental	Open in IMG/M
3300005651	Marine algae microbial communities from Blueberry Hill - Blueberry Hill, Maine	Environmental	Open in IMG/M
3300005654	Porphyra Blade Metagenome Co-Assembly	Environmental	Open in IMG/M
3300009072	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male1 metaG	Host-Associated	Open in IMG/M
3300009073	Marine algal microbial communities from Bantry Bay, Ireland - BantryBay_4 metaG	Host-Associated	Open in IMG/M
3300009410	Marine algal microbial communities from Porto, Portugal - Porto_5 metaG	Host-Associated	Open in IMG/M
3300009415	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex1 metaG	Host-Associated	Open in IMG/M
3300009421	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex2 metaG	Host-Associated	Open in IMG/M
3300009439	Marine algal microbial communities from Maine, USA - Maine_Asex4_metaG	Host-Associated	Open in IMG/M
3300009446	Marine algal microbial communities from Maine, USA - Maine_Asex2 metaG	Host-Associated	Open in IMG/M
3300027009	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male1 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027028	Marine algal microbial communities from Porto, Portugal - Porto_5 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027262	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex1 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027325	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male2 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027498	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex2 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027509	Marine algal microbial communities from Bantry Bay, Ireland - BantryBay_4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027554	Marine algal microbial communities from Maine, USA - Maine_Asex4_metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027623	Marine algal microbial communities from Maine, USA - Maine_Asex2 metaG (SPAdes)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0068459_1008457	3300004791	Porphyra Umbilicalis	VLRTVLASEYNHPGDRRHRLSERVRKIDLDSCLKDSIVDDSLDYFE*
Ga0068459_1016955	3300004791	Porphyra Umbilicalis	IVLRTVLASEYNHPGDRRHRLSERVRKIDLDSCLKDSIVDDSLDYFE*
Ga0068459_1026961	3300004791	Porphyra Umbilicalis	MILRIVLRTILASEYNHPGDRRHRLSE*VRKIDLDSXLKDSIVDDS
Ga0068459_1044612	3300004791	Porphyra Umbilicalis	MILGIVLRTVLASEYNHPGDRRHRLSERVRKIDLDSCLKDSIVDDSLDFFE*
Ga0068459_1051251	3300004791	Porphyra Umbilicalis	SKIILRIALRTVLASEYNHPGDRRHTLSERVRKIDLDSCLKDSIVDDSLDYFE*
Ga0068459_1052702	3300004791	Porphyra Umbilicalis	VLRTILASEYNHHGDRRHRLSERVRKIDLDSCLKDSIVDDSLDYFE*
Ga0068459_1100782	3300004791	Porphyra Umbilicalis	VLRTVLASEYNHPGDRRHRLSERVRKIDLDSCLNDSIVDDSLDYFE*
Ga0068459_1117224	3300004791	Porphyra Umbilicalis	VLRTILASEYNHPGDRRHRLSERVRKIDLDSCLKDSIVDDSLDYFE*
Ga0079203_10140233	3300005647	Marine	VLRTVLASEYNHHWARSHRLSERVRKIDLYSCLKDSIVDDILDYSE*
Ga0079203_10348821	3300005647	Marine	VLASEYNHPGDRRHRLSERVRKIDLDSCLKDSIVDDSLDFFE*
Ga0079203_10418952	3300005647	Marine	MKDHPVSLVLIVLRIVLRTVLKSEYDHPGDRPHGLSKRVRKIDLDSYLTDSIVDHSLEYFE*
Ga0079203_10428581	3300005647	Marine	MILGIVLRTVLASEYNHPGDRRHRLSERVRKIDLDSCLKDSIV
Ga0079203_10529642	3300005647	Marine	MKDHSDSLVLIVLRIVLRTVLKSGYDHPGDRPHGLSKRVRKIDLHSYLTDSIVDDTVVPQKT*
Ga0079203_10537112	3300005647	Marine	MILGIVLRTVLASEYNHPEDRRHRLSERVRKIDLDSCLKDSIVNDRLDYFE*
Ga0079203_10628851	3300005647	Marine	VLRTVLASEYNHPGDRRHRLSELVRKIDLDSCLKDSIVDDSLDY*
Ga0079203_10796322	3300005647	Marine	VLRTVLASEYNHPGDRRHRLSERVRKIDLDFCLKDSIADDSLDYFE*
Ga0079203_10930261	3300005647	Marine	MSKIILRIVLRTVLASEYNHPGDCRHRLSERGRKIDLDSCLKDSIVDDSLDYFD*
Ga0079203_10938081	3300005647	Marine	VLRTVLSSKYNHSGDRRHRLSERVRKIDLDSCLKDSIVDDSLDYFK*
Ga0079203_10973902	3300005647	Marine	VLRTILASEYNHPGDRRHRLSERVCKIDLDSCLKDSIVDDSLDYFE*
Ga0079203_11114912	3300005647	Marine	VLTTVLASEYNHPGDRRHRLSERVRKIDLDFCLKDSIVDDSLEYFE*
Ga0079203_11121633	3300005647	Marine	VLRTVLASEYNHPGDRRHRLSERVRKIDLDSCLKDSMVDDSLDYFE*
Ga0079203_11150693	3300005647	Marine	VLRTVLASEYNYPGDSRHRLSERVRRIDLDFCLKDSIGDDSLDYFE*
Ga0079203_11208972	3300005647	Marine	TILASEYNHPGDRRHRLSERVRKIDLDSCLKDSIVDDGLDYFE*
Ga0079203_11231432	3300005647	Marine	MLGIVLKTVLASKYNHPGDGRHRLSEQVRKIDLDSCLKDSIVGDSLDYFE*
Ga0079203_11406381	3300005647	Marine	VLRTVLASEYNDPGDRRHSLSERMRKTDLDSCLKDSIVDDSLDYFE*
Ga0079203_11669122	3300005647	Marine	VLRTILASEYNHPGDRRHILSERVRKIDLDSCLKDSIVDDSLDYFE*
Ga0079203_11699901	3300005647	Marine	MIILGIVLRTVLASEYNHPGDRRHRLSERVRKIDLDSCLEDSIADDK*
Ga0079203_11784911	3300005647	Marine	VLRTILASEYNHPGDRRHRLSERVRKIDLDSCLKDSIVEDSLDYFE*
Ga0079202_100189774	3300005651	Marine	VLASKYNHPGDGRHRLSEQVRKIDLDSCLEDSIVDDSLEYFK*
Ga0079202_100279922	3300005651	Marine	VLRTVLASKYNHPGDGRHRLSEQVRKIDLDSCLKDSIVGDSLDYFE*
Ga0079202_100302232	3300005651	Marine	VLRTVLASEYNHPRDRRHRLSERVRKIDLDSCLKDSIVDDSLDYFE*
Ga0079202_100621152	3300005651	Marine	GSKIILSIVLRTVLASEYNHPGDRRHRLSERVRKIDLDSCLKASIVDDSLDYLE*
Ga0079202_101143951	3300005651	Marine	MRIVLRTILASEYNHHGDRRHRLSERVRKIDLDSCLKDSIVDDSLDY
Ga0079202_101271772	3300005651	Marine	LRIVLRTVLASEYNHPGDRRHRLSERVRKIDLDSCLKDSMVDDSLDYFE*
Ga0079202_101290151	3300005651	Marine	IILGIVLRTVLASEYNHPGDRRHRLSERVRKIDLDSCLKDSIVDDSLDYFE*
Ga0079202_101658041	3300005651	Marine	GSKIILRIVLRTVLASEYNHPGDRRHRLSERVRKIDLDSCVKDSIVDDSLYYFE*
Ga0079202_101774932	3300005651	Marine	VLRTVLASEYNHPGDRRHRLSELVRKIDLDSCLKDSIVDDSLDYLE*
Ga0079202_101805811	3300005651	Marine	MIILGIVLRTVLASHHNHLGDRRHRLSERVRKIDLDSCLKNSIVDDSLDYFE*
Ga0079202_101936532	3300005651	Marine	LGIVLRTVLASEYNHPGDSRHSLSKRVRKIDLDSCLKDPIVDDSLDYFE*
Ga0079202_101987822	3300005651	Marine	VLRTVLASEYNHPGDRRHRLSERVRKIDLDFCLKDSIVDDSLDY
Ga0079202_102095912	3300005651	Marine	TILASEYNHPGDRRHRLSERVRKIDLDSCLKDSIVDDSLDHFE*
Ga0079202_102376601	3300005651	Marine	VLRTILASDYNHPGDRRHRLSERVRKIDLDSCLKDSIVDDSLVYFE*
Ga0079204_100674855	3300005654	Marine	MILGIVLRTVLASEYNHPGDRRHRLSERVRKIDLDSCL
Ga0079204_101095542	3300005654	Marine	LASEYNHPGDRRHRLSELVRKIDLDSCLKDSIVDDSLDY*
Ga0079204_101829271	3300005654	Marine	VLRTILASQYNHPGDRRHRLSDRVRKIDLDSCLKNSIVDDSLDYFE*
Ga0079204_102129261	3300005654	Marine	RIVLRTVLASEYNHPGDRRHRLSERVRKIDLDFCLKDSIADDSLDYFE*
Ga0079204_103560922	3300005654	Marine	PGDRRHRLSERVRKIDLDFCLKDSIVDDSLDYFE*
Ga0115030_10008421	3300009072	Marine	VLRTVLASEYNHPGDCRHRLSERVRKIDVDFCLKDSIVDDSLDYFE*
Ga0115030_10064432	3300009072	Marine	MKDHSNSLVLIVLRIVLRTVLKSEYDHPGDRPHGLSKRVHKIDLDSNLTDSIVDVSLDYFE*
Ga0115030_10098031	3300009072	Marine	VLRTLLASEYNHPMDRRHRLSERVRKIDVDSCLKDSIVDDSLDYFE*
Ga0115030_10148791	3300009072	Marine	MILGIVLRTVLASEYNHPGDRRHRLNERVRKIDVDSCLKDSIVDDSLDYFE*
Ga0115030_10675962	3300009072	Marine	IILGIVLRTVLASEYNHPGDRRHRLSERVRKIDVDSCLKDSIVDDSLDYIE*
Ga0115030_11012232	3300009072	Marine	IILGIVLRTVLASEYNHPGDRRHRLSERVRKIDVDSCLKDSIVDDSLDWFE*
Ga0114957_10040661	3300009073	Marine	VLRTVLASEYNHPGDRRHRLSERVRKIDLDSCLKNSIVDDSLDYFE*
Ga0114957_10127669	3300009073	Marine	VGIVLRTVLAWENIHSGDRRHILSEQVRMIHLDSCLKDSIVDDNLDCLE*
Ga0114957_10214691	3300009073	Marine	MILGIVLRTVLASEYNHPGDRRHRLSERVRKIDLDSCLKDSI
Ga0114957_10418311	3300009073	Marine	EYNHPGDRRHRLSERVRKIDLDSCLKDSIVDDSLDFFE*
Ga0114957_10911731	3300009073	Marine	MIILGIVLRTVLASEYNHPGDRRHRLSERVRKIDLDSCLKVSIVDDSLDYFE*
Ga0114957_11539161	3300009073	Marine	SEYNHPGDRRHRLSERVRKIDLDSCLKDSIVDDSLDYFE*
Ga0114957_11580061	3300009073	Marine	LGIVLRTVLASEYNHPGDRRHRLSERVRKIDLDSCLKDSIVNDRLDYFE*
Ga0114955_10069383	3300009410	Marine	MKDHSNSLVLIVLRIVLRTVLKSEYDHPGDRPHGLSKRVHKIDLDSNLTDSIVDDSLDYFE*
Ga0115029_100331912	3300009415	Marine	SKIILGIVLRTVLASEYNHPGDRRHRLSERVRKIDLDSCLKNSIVDDSLDYFE*
Ga0115029_10075551	3300009415	Marine	VGIVLRIVLAWENIHSGDRRHILSEQVRMIHLDSCLKDSIVDDNLDCLE*
Ga0115029_10356004	3300009415	Marine	VLRTVLASEYNHPGDRRHRLSERVRKIDLDFCLKDSIVDDSLDYF
Ga0115029_10756131	3300009415	Marine	SKIILRIVLRTVLASEYNHPGDRRHRLSELVRKIDLDSCLKDSIVDDSLDYLE*
Ga0115029_10795111	3300009415	Marine	LASEYNHPGDRRHRLSERVRKIDLDSCLKDSIVDDSLDYFE*
Ga0115029_10898421	3300009415	Marine	KIILGIVLRTVLASEYNHPGDRRHRLSERVRKIDLDSCLKVSIVDDILDYFE*
Ga0115029_11319031	3300009415	Marine	VLRTVLASEYNHPGDRRHRLSERVRKIDLDSCVKDSIVDDSLYYFE*
Ga0115029_11361182	3300009415	Marine	RTILASEYNHPGDRRHRLSERVRKIDLDSCLKDSIVDDSLDHFE*
Ga0115029_11710491	3300009415	Marine	YNHPGDRRHRLSERVRKIDLDFCLKDSIVDDSLDYFE*
Ga0114952_11032761	3300009421	Marine	YNHPGDRRHRLSERVRKIDLDSCLKDSIVDDSLDYFE*
Ga0114952_11115391	3300009421	Marine	ILGIMLRTVLASEYSHPRDRRHRLSERVRKIDLDSCLKDSIVDNSLDYFE*
Ga0114952_12331351	3300009421	Marine	MRIVLRTILASEYNHHGDRRHRLSERVRKIDLDSCLKDSIVDD
Ga0115031_10019211	3300009439	Marine	SGSKIILSIVLRTVLASEYNHPGDRRHRLSERVRKIDLDSCLKASIVDDSLDYLE*
Ga0115031_10465564	3300009439	Marine	MRIVLRTILASEYNHHGDRRHRLSERVRKIDLDSCLKDSIVDDSLDYF
Ga0115031_11503221	3300009439	Marine	ILRIVLRTVLASEYNHPGDRRHRLSERVRKIDLDSCLKDSMVDDSLDYFE*
Ga0115031_11690691	3300009439	Marine	VLASEYNHPGDRRHRLSERVRKIDLDSCLKDSIVYVSLDHFE*
Ga0115031_11957861	3300009439	Marine	SKIILRIVLRTVLASEYNHPGDRRHRLSERVRKIDLDSCVKDSIVDDSLYYFE*
Ga0114956_11293301	3300009446	Marine	IILGIVLTTVLTSEYDHPGNRRHRLSKRVRKIDLDSCLKDSIVDDSLDYFE*
Ga0114956_12137051	3300009446	Marine	VLRTVLASEYNHPGDRRHRLSERVRKIDLDSCLKDSIVDDS
Ga0209093_100066517	3300027009	Marine	VLRTVLVSEYNHPGDRRHRLSERVRKIDVDSCLKDSIVDDSLDYFE
Ga0209093_100125911	3300027009	Marine	MASEYNHPGDRRHRLSERVRKIDVDSCLKDSIVDDSLDYFE
Ga0209295_10046854	3300027028	Marine	VSEYNHPGDRRHRLSERVRKIDVDSCLKDSIVDDSLDY
Ga0209295_10068163	3300027028	Marine	MKDHSNSLVLIVLRIVLRTVLKSEYDHPGDRPHGLSKRVHKIDLDSNLTDSIVDDSLDYF
Ga0209295_10261781	3300027028	Marine	VLRTVLASEYNHPGDRRHRLSERVRKIDVDSCLKDSIV
Ga0209303_10042679	3300027262	Marine	VGIVLRIVLAWENIHSGDRRHILSEQVRMIHLDSCLKDSIVDDNLDCLE
Ga0209303_10091476	3300027262	Marine	MLGIVLKTVLASKYNHPGDGRHRLSEQVRKIDLDSCLKDSIVGDSLDYFE
Ga0209186_100159616	3300027325	Marine	VLRTVLASEYNHPGDCRHRLSERVRKIDVDFCLKDSIVDDSLDYFE
Ga0209186_10177694	3300027325	Marine	VLRTLLASEYNHPMDRRHRLSERVRKIDVDSCLKDSIVDDSLDYFE
Ga0209185_10482613	3300027498	Marine	MLGIVLKTVLASKYNHPGDGRHRLSEQVRKIDLDSCLEDSIVDDSLEYFK
Ga0209187_10103652	3300027509	Marine	VGIVLRTVLAWENIHSGDRRHILSEQVRMIHLDSCLKDSIVDDNLDCLE
Ga0209187_10322792	3300027509	Marine	MASDHNHPGDRRHRLSERVRKIDLDSCLKDSIVDDSLDYFE
Ga0209831_10101247	3300027554	Marine	MRIVLRTILASEYNHHGDRRHRLSERVRKIDLDSCLKDSIVDDSLDYFE
Ga0209831_10103024	3300027554	Marine	MILGIVLRTVLASEYNHPEDRRHRLSERVRKIDLDSCLKDSIVNDRLDYFE
Ga0209831_10149811	3300027554	Marine	LRTVLASEYNHPGDRRHRLNERVPKIDIDFCLKDSIVDDSLDYFE
Ga0209831_10315802	3300027554	Marine	MILGIVLRTVLASEYNHPGDRRHRLSERVRKIDLDSCLKDSIVDDSLDFFE
Ga0209831_10947511	3300027554	Marine	LRTILASEYNHPGDRRHRLSERVRKIDLDSCLKDSIVDDSLDHFE
Ga0209831_11288301	3300027554	Marine	SKIILRIVLRTVLASEYNHPGDRRHRLSERVRKIDLDSCVKDSIVDDSLYYFE
Ga0209828_10416451	3300027623	Marine	IVLGIVLRTVLASEYNHPRDRRHRLSERVRKIDLDSCLKDSIVDDSLDYFE
Ga0209828_10760641	3300027623	Marine	GSRSRPASRSTIILGIVLTTVLTSEYDHPGNRRHRLSKRVRKIDLDSCLKDSIVDDSLDYFE
Ga0209828_10801671	3300027623	Marine	IILGIVLRTVLASECRHPGDRRHTLSERVPKIDLDSFLKNSIVNDSLDCFE
Ga0209828_11091221	3300027623	Marine	RTILASEYNHPGDRRHRLSERVRKIDLDSCLKDSIVDDSLDHFE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F100273

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences