NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F100417

Metagenome / Metatranscriptome Family F100417

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F100417
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 56 residues
Representative Sequence MLPVIEALLAGVAVGIINRFLARLEHECPDVSAAHRDDSDASTASSGTVEIPHFH
Number of Associated Samples 61
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Eukaryota
% of genes with valid RBS motifs 17.65 %
% of genes near scaffold ends (potentially truncated) 30.39 %
% of genes from short scaffolds (< 2000 bps) 99.02 %
Associated GOLD sequencing projects 51
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Eukaryota (66.667 % of family members)
NCBI Taxonomy ID 2759
Taxonomy All Organisms → cellular organisms → Eukaryota

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine
(52.941 % of family members)
Environment Ontology (ENVO) Unclassified
(59.804 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(63.725 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 45.45%    β-sheet: 0.00%    Coil/Unstructured: 54.55%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF13659Obsolete Pfam Family 0.98


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms66.67 %
UnclassifiedrootN/A33.33 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005941|Ga0070743_10034947Not Available1729Open in IMG/M
3300005941|Ga0070743_10214142All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales630Open in IMG/M
3300005942|Ga0070742_10151692All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales644Open in IMG/M
3300007544|Ga0102861_1160491All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium612Open in IMG/M
3300007548|Ga0102877_1119078All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales750Open in IMG/M
3300007550|Ga0102880_1070147Not Available928Open in IMG/M
3300007554|Ga0102820_1080328All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales784Open in IMG/M
3300007554|Ga0102820_1110640All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales660Open in IMG/M
3300007557|Ga0102821_1055990All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales1021Open in IMG/M
3300007557|Ga0102821_1112020All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales694Open in IMG/M
3300007634|Ga0102901_1207303All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium551Open in IMG/M
3300007639|Ga0102865_1161049All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales671Open in IMG/M
3300007642|Ga0102876_1097733All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium797Open in IMG/M
3300007658|Ga0102898_1044367Not Available1001Open in IMG/M
3300007661|Ga0102866_1171280All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium554Open in IMG/M
3300007667|Ga0102910_1090119All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales709Open in IMG/M
3300007681|Ga0102824_1147325Not Available619Open in IMG/M
3300007692|Ga0102823_1088056Not Available824Open in IMG/M
3300007692|Ga0102823_1143136Not Available635Open in IMG/M
3300007706|Ga0102899_1074693All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales817Open in IMG/M
3300007715|Ga0102827_1076272All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales754Open in IMG/M
3300007716|Ga0102867_1124304Not Available693Open in IMG/M
3300007864|Ga0105749_1019715Not Available1209Open in IMG/M
3300007972|Ga0105745_1153358All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales707Open in IMG/M
3300007992|Ga0105748_10135316Not Available1003Open in IMG/M
3300008510|Ga0110928_1105123Not Available592Open in IMG/M
3300008995|Ga0102888_1024112All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales1134Open in IMG/M
3300008996|Ga0102831_1122585Not Available864Open in IMG/M
3300008996|Ga0102831_1144121All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales790Open in IMG/M
3300008996|Ga0102831_1223907Not Available621Open in IMG/M
3300008996|Ga0102831_1232846Not Available608Open in IMG/M
3300009024|Ga0102811_1163957All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales831Open in IMG/M
3300009024|Ga0102811_1167411Not Available822Open in IMG/M
3300009056|Ga0102860_1080446All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales895Open in IMG/M
3300009057|Ga0102892_1084397All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales613Open in IMG/M
3300009059|Ga0102830_1094936Not Available886Open in IMG/M
3300009075|Ga0105090_10425122All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium809Open in IMG/M
3300009075|Ga0105090_10556957All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales696Open in IMG/M
3300009075|Ga0105090_10599668All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales669Open in IMG/M
3300009075|Ga0105090_10705658Not Available613Open in IMG/M
3300009075|Ga0105090_10910297All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium536Open in IMG/M
3300009079|Ga0102814_10061580Not Available2069Open in IMG/M
3300009079|Ga0102814_10210545All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales1059Open in IMG/M
3300009079|Ga0102814_10416665All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales731Open in IMG/M
3300009079|Ga0102814_10450907Not Available700Open in IMG/M
3300009079|Ga0102814_10835222All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium510Open in IMG/M
3300009080|Ga0102815_10110126Not Available1506Open in IMG/M
3300009080|Ga0102815_10212180All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium1065Open in IMG/M
3300009080|Ga0102815_10285114All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium912Open in IMG/M
3300009080|Ga0102815_10308989All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales875Open in IMG/M
3300009080|Ga0102815_10349165All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales820Open in IMG/M
3300009081|Ga0105098_10165926All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium1001Open in IMG/M
3300009081|Ga0105098_10315825Not Available754Open in IMG/M
3300009081|Ga0105098_10335896All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium735Open in IMG/M
3300009081|Ga0105098_10779096Not Available515Open in IMG/M
3300009081|Ga0105098_10816292Not Available505Open in IMG/M
3300009086|Ga0102812_10208789All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales1064Open in IMG/M
3300009086|Ga0102812_10308102Not Available861Open in IMG/M
3300009086|Ga0102812_10420145Not Available728Open in IMG/M
3300009086|Ga0102812_10673174All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium569Open in IMG/M
3300009141|Ga0102884_1096487All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales743Open in IMG/M
3300009165|Ga0105102_10163388All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales1093Open in IMG/M
3300009165|Ga0105102_10366578All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium759Open in IMG/M
3300009169|Ga0105097_10518003All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium668Open in IMG/M
3300009169|Ga0105097_10527329All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales662Open in IMG/M
3300009169|Ga0105097_10857892All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales520Open in IMG/M
3300009466|Ga0126448_1030008All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium1284Open in IMG/M
3300009474|Ga0127390_1142584All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium612Open in IMG/M
3300009530|Ga0129361_102252All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales767Open in IMG/M
3300009911|Ga0132221_1001962All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales1124Open in IMG/M
3300022360|Ga0210373_106276All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium581Open in IMG/M
3300024239|Ga0247724_1031660All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales771Open in IMG/M
3300024239|Ga0247724_1058820Not Available577Open in IMG/M
3300024346|Ga0244775_10372581All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium1176Open in IMG/M
3300024346|Ga0244775_11276698All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium569Open in IMG/M
3300024346|Ga0244775_11414700All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales534Open in IMG/M
3300027188|Ga0208921_1025364All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium901Open in IMG/M
3300027190|Ga0208674_1018800All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales1090Open in IMG/M
3300027192|Ga0208673_1055457All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales632Open in IMG/M
3300027192|Ga0208673_1066468Not Available567Open in IMG/M
3300027197|Ga0208922_1051355Not Available699Open in IMG/M
3300027198|Ga0208163_1028578All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium928Open in IMG/M
3300027248|Ga0208176_1044440All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales573Open in IMG/M
3300027416|Ga0207994_1125127Not Available515Open in IMG/M
3300027525|Ga0208437_1123176All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales589Open in IMG/M
3300027571|Ga0208897_1079461Not Available847Open in IMG/M
3300027753|Ga0208305_10128925All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium936Open in IMG/M
3300027885|Ga0209450_10406433All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales993Open in IMG/M
3300034019|Ga0334998_0357038All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium851Open in IMG/M
3300034019|Ga0334998_0390265All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales802Open in IMG/M
3300034066|Ga0335019_0612756All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium636Open in IMG/M
3300034066|Ga0335019_0748869All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales556Open in IMG/M
3300034066|Ga0335019_0858377All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium508Open in IMG/M
3300034072|Ga0310127_115429All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales1123Open in IMG/M
3300034072|Ga0310127_224623All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium682Open in IMG/M
3300034072|Ga0310127_333103Not Available509Open in IMG/M
3300034073|Ga0310130_0247071All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales561Open in IMG/M
3300034073|Ga0310130_0264481Not Available543Open in IMG/M
3300034073|Ga0310130_0267659Not Available540Open in IMG/M
3300034112|Ga0335066_0657360Not Available535Open in IMG/M
3300034200|Ga0335065_0826595All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium517Open in IMG/M
3300034682|Ga0310128_060634Not Available779Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine52.94%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment14.71%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine7.84%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater6.86%
Fracking WaterEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water6.86%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water2.94%
Meromictic PondEnvironmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond1.96%
Meromictic PondEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond1.96%
Deep Subsurface SedimentEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment1.96%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment0.98%
Water BodiesEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Water Bodies0.98%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300005941Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697EnvironmentalOpen in IMG/M
3300005942Estuarine microbial communities from the Columbia River estuary, USA - metaG S.757EnvironmentalOpen in IMG/M
3300007544Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3EnvironmentalOpen in IMG/M
3300007548Estuarine microbial communities from the Columbia River estuary - metaG 1548B-3EnvironmentalOpen in IMG/M
3300007550Estuarine microbial communities from the Columbia River estuary - metaG 1549A-3EnvironmentalOpen in IMG/M
3300007554Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.709EnvironmentalOpen in IMG/M
3300007557Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.715EnvironmentalOpen in IMG/M
3300007634Estuarine microbial communities from the Columbia River estuary - metaG 1555A-02EnvironmentalOpen in IMG/M
3300007639Estuarine microbial communities from the Columbia River estuary - metaG 1449C-02EnvironmentalOpen in IMG/M
3300007642Estuarine microbial communities from the Columbia River estuary - metaG 1548A-3EnvironmentalOpen in IMG/M
3300007658Estuarine microbial communities from the Columbia River estuary - metaG 1555A-3EnvironmentalOpen in IMG/M
3300007661Estuarine microbial communities from the Columbia River estuary - metaG 1546A-3EnvironmentalOpen in IMG/M
3300007667Estuarine microbial communities from the Columbia River estuary - metaG 1558A-3EnvironmentalOpen in IMG/M
3300007681Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.753EnvironmentalOpen in IMG/M
3300007692Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.743EnvironmentalOpen in IMG/M
3300007706Estuarine microbial communities from the Columbia River estuary - metaG 1555B-3EnvironmentalOpen in IMG/M
3300007715Estuarine microbial communities from the Columbia River estuary - metaG S.751EnvironmentalOpen in IMG/M
3300007716Estuarine microbial communities from the Columbia River estuary - metaG 1546B-3EnvironmentalOpen in IMG/M
3300007864Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461B_3.0umEnvironmentalOpen in IMG/M
3300007972Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0umEnvironmentalOpen in IMG/M
3300007992Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2umEnvironmentalOpen in IMG/M
3300008510Microbial Communities in Water bodies, Singapore - Site RAEnvironmentalOpen in IMG/M
3300008995Estuarine microbial communities from the Columbia River estuary - metaG 1551A-3EnvironmentalOpen in IMG/M
3300008996Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747EnvironmentalOpen in IMG/M
3300009024Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705EnvironmentalOpen in IMG/M
3300009056Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3EnvironmentalOpen in IMG/M
3300009057Estuarine microbial communities from the Columbia River estuary - metaG 1553A-3EnvironmentalOpen in IMG/M
3300009059Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703EnvironmentalOpen in IMG/M
3300009075Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015EnvironmentalOpen in IMG/M
3300009079Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741EnvironmentalOpen in IMG/M
3300009080Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759EnvironmentalOpen in IMG/M
3300009081Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015EnvironmentalOpen in IMG/M
3300009086Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713EnvironmentalOpen in IMG/M
3300009141Estuarine microbial communities from the Columbia River estuary - metaG 1550A-3EnvironmentalOpen in IMG/M
3300009165Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015EnvironmentalOpen in IMG/M
3300009169Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015EnvironmentalOpen in IMG/M
3300009466Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 2m depth; DNA IDBA-UDEnvironmentalOpen in IMG/M
3300009474Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 3m depth; DNA IDBA-UDEnvironmentalOpen in IMG/M
3300009530Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 4m depth; RNA IDBA-UDEnvironmentalOpen in IMG/M
3300009911Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 6, surface; RNA IDBA-UDEnvironmentalOpen in IMG/M
3300022360Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.763 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024239Subsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-EEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300027188Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.709 (SPAdes)EnvironmentalOpen in IMG/M
3300027190Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.733 (SPAdes)EnvironmentalOpen in IMG/M
3300027192Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.715 (SPAdes)EnvironmentalOpen in IMG/M
3300027197Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.743 (SPAdes)EnvironmentalOpen in IMG/M
3300027198Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.753 (SPAdes)EnvironmentalOpen in IMG/M
3300027248Estuarine microbial communities from the Columbia River estuary - metaG 1558A-3 (SPAdes)EnvironmentalOpen in IMG/M
3300027416Estuarine microbial communities from the Columbia River estuary, USA - metaG S.757 (SPAdes)EnvironmentalOpen in IMG/M
3300027525Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705 (SPAdes)EnvironmentalOpen in IMG/M
3300027571Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697 (SPAdes)EnvironmentalOpen in IMG/M
3300027753Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 (SPAdes)EnvironmentalOpen in IMG/M
3300027885Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)EnvironmentalOpen in IMG/M
3300034019Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049EnvironmentalOpen in IMG/M
3300034066Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087EnvironmentalOpen in IMG/M
3300034072Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-AEnvironmentalOpen in IMG/M
3300034073Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XLEnvironmentalOpen in IMG/M
3300034112Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191EnvironmentalOpen in IMG/M
3300034200Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190EnvironmentalOpen in IMG/M
3300034682Fracking water microbial communities from deep shales in Oklahoma, United States - MC-4-AEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0070743_1003494733300005941EstuarineMLPVIEALLAGVAVGIINRFLARLEHECPDGSAAHRDDSSTSTASSGTVEIDHFH*
Ga0070743_1021414223300005941EstuarineKSAANFAAMLPVIEALLAGVAVGIINRFLARLEHECPDVSAAHRDDSDASTASSGTVEIPHFH*
Ga0070742_1015169223300005942EstuarineMLPVIEALLAGVAVGIINRFLARLEHECPDVSAVHRDDSDASTASSGTVEIPHFH*
Ga0102861_116049123300007544EstuarineMLPVIEALLAGVAVGIINRFLARLEHECPDVSAAHRDDSDASTASSGTVEIGHFN*
Ga0102877_111907823300007548EstuarineMLPVIEALLAGVAVGIINRFLARLEHECPDVSAAHRDDSDASTASSGTVEIPHFH*
Ga0102880_107014713300007550EstuarineMLPVIEALLAGVAVGIINRFLARLEHECPDISAAHRDDSDASTASSGTVEIPHFH*
Ga0102820_108032813300007554EstuarineVAVGIINRFLARLEHECPDGSAAHRDDSSTSTASSGTVEIDHFH*
Ga0102820_111064023300007554EstuarineMLPILEAIIAGLIVGAANRLLARLEHECPEVRAEMRRDDSGSSTASSGTVEIGHFN*
Ga0102821_105599023300007557EstuarineMLPILEAILAGLIVGAANRLLARLEHECPEVRAEMRRDDSGSSTASSGTVEIPHFH*
Ga0102821_111202023300007557EstuarineMLPVIEALLAGVAVGIINRFLARLEHECHNVSAAHRDDSDASTASSGTVEIGHFH*
Ga0102901_120730313300007634EstuarineHKQKSAANFAAMLPVIEALLAGVAVGIINRFLARLEHECPDVSAVHRDDSDASTASSGTVEIPHFH*
Ga0102865_116104923300007639EstuarineMLPVIEALLAGVAVGIINRFLARSEHECPDVSVAHRDDSDASTASSGTVEIPHFH*
Ga0102876_109773323300007642EstuarineIAGLIVGAANRLLARLEHECPEVRAQMHRDDSASSTASSGTVEIGHFN*
Ga0102898_104436723300007658EstuarineMLPVIEALLAGMAVGIINRFLARLEHECPDVSAAHRDDSHASTASSGTVEIPHFQ*
Ga0102866_117128013300007661EstuarineLLAGVAVGIINRFLARLEHECPDGSAAHRDDSDASTASSGTVEIPHFH*
Ga0102910_109011923300007667EstuarineMLPVIEALLAGVAVGIINRFLARLEQECPDVSAAHRDDSDASTASSGTVEIPHFH*
Ga0102824_114732523300007681EstuarineMLPILEAILAGLIVGAANRLLARLEHECPEVRAEMRRDDSGSSTASSGTVEIP
Ga0102823_108805613300007692EstuarineMLPVIEALVAGVAVGIINRFLARLEAQCPDAEIHRDDSDASTASSGTVEIPHF*
Ga0102823_114313613300007692EstuarineMLPILEAIIAGLIVGAANRLLARLEHECPEAHAQMHRDDSSTTTASSGTVEILHFH*
Ga0102899_107469323300007706EstuarineMLPVIEPLLAGVAVGIINRFLARLEHECPDVSAAHRDDSDASTASSGTVEIPHFH*
Ga0102827_107627223300007715EstuarineMLPVIEALLAGVAVGIINRFLARLEHECPDGSAAHRDDSDASTASSGTVEIGHFH*
Ga0102867_112430413300007716EstuarineMLPVIEALLAGVAVGIINRFLARLEHECPDVSVAQRDDSDASTASSGTVEIPHFH*
Ga0105749_101971513300007864Estuary WaterMLPVIEALLAGVAVGIINRFLARLEHDCPSTAVHRDDSSTSTASSGTVEIGHFH*
Ga0105745_115335823300007972Estuary WaterLPVIEALLAGVAVGIINRFLARLEHECPDVSAAHRDDSDASTASSGTVEIPHFH*
Ga0105748_1013531623300007992Estuary WaterMLPVIEALLAGVAVGIINRFLARLEHECPDTASTAAHRDDSSTSTASSGTVEIDHFH*
Ga0110928_110512313300008510Water BodiesMLPVLEAMIAGVLVGILNRALARLEAQCPEDVREEMRRDDSSSSTASSGTVEIPHFH*
Ga0102888_102411223300008995EstuarineMLPVIEALLAGVAVGIINRFLARLEHECPDVSVAHRDDSDASTASSGTVEIPHFH*
Ga0102831_112258523300008996EstuarineMLLVIEALLAGVAVGIINRFLARLEHECPDTASVHRDDSSTSTASSGTVEIGHFH*
Ga0102831_114412113300008996EstuarineMLPVIEALLAGVAVGIINRFLARLEHECHDVSTPRNDSDASTASSGTVEIGHFH*
Ga0102831_122390723300008996EstuarineVIEALLAGVAVGIINRFLARIEAQCPETEIRDDSSTSTASSGTVEIQHI*
Ga0102831_123284623300008996EstuarineMLPILEAIIAGLIVGAANRLLARLEHECPEVAEMRREDSASSTASSGTVEIPHF*
Ga0102811_116395713300009024EstuarineMLPVIEALLAGVAVGIINRFLARLEYECPDVSVAHRDDSDASTASSGTVEIPHFH*
Ga0102811_116741123300009024EstuarineMLPVIEALLAGVAVGIINRFLARIEAQCPDAEIHRDDSDASTASSGPVEIPHF*
Ga0102860_108044623300009056EstuarineMLPVIEALLAGVAVGIINRFLARLEHECPDAASTAVHRDDSDASTASSGTVEIPHFH*
Ga0102892_108439713300009057EstuarineMLPVIEALLAGVAVGIINRFLARLEHECPDTANTAVHRDDSSTSTASSGTVEIDHFH*
Ga0102830_109493623300009059EstuarineMLPVIEALLAGVAVGIINRFLARIEAQCPETEIRDDSSVSTASSGTVEIPHF*
Ga0105090_1042512223300009075Freshwater SedimentMLPVLEALLAGVAVGIINRFLARLEAQCPEDVRAEIHRDDSGSSTASSGTVEISHFH*
Ga0105090_1055695723300009075Freshwater SedimentLPVLEAMVAGILVGFFNRMLARLEQECPEDIRREMHRDDSSTSTASSGTVELPHFH*
Ga0105090_1059966813300009075Freshwater SedimentMLPVLEAMVAGILVGFINRLLARLEQECPEDTRRDRDDSSTSTASSGTVEIPHFQ*
Ga0105090_1070565823300009075Freshwater SedimentVQKTAVKFAAMLPIIEAMLAGVAVGIIKRLLARFEVQCPEDIRREMHRDDSSTSTASSGTVELPHFH*
Ga0105090_1091029723300009075Freshwater SedimentMLPILEAMLAGVAVGIINRLLARLEVQCPEEIREEMRRDDSSSSTASSGTVEIPHFH*
Ga0102814_1006158023300009079EstuarineMLPVIEALLAGVAVGIINRFLARLEAQCPDAEIHRDDSDASTASSGTVEIPHF*
Ga0102814_1021054513300009079EstuarineALLAGVAVGIINRFLARLEHECPDISAHRDDSDASTASSGTVEIGHFQ*
Ga0102814_1041666513300009079EstuarineANFAAMLPVIEALLAGVAVGIINRFLARLEHECPDVSAVHRDDSDASTASSGTVEIGHFH
Ga0102814_1045090723300009079EstuarineMLPILEAIIAGLIVGAANRLLARLEHECPEVRAEMRRDDSGSSTASSGTVEIPHFH*
Ga0102814_1083522223300009079EstuarineMLPILEAMLAGVAVGIINRLLARLEHECPEVRAEMRRDDSGSSTASSGTVEIPHFH*
Ga0102815_1011012623300009080EstuarineMLPVIEALLAGVAVGIINRFLARIEAQCPDAEIHRDDSDASTASSGTVEIPHF*
Ga0102815_1021218013300009080EstuarineALLAGVAVGIINRFLARLEHECPDGSAAHRDDSSTSTASSGTVEIDHFH*
Ga0102815_1028511423300009080EstuarineYWTKSKERAANFAAMLPVIEALLAGVAVGIINRFLARLEHECPDTASTAVHRDDSSTSTASSGTVEIGHFH*
Ga0102815_1030898913300009080EstuarineMLPILEAIIAGLIVGAANRLLARLEHECPEVRAQMYRDDSGSSTASSGTMEIPHF*
Ga0102815_1034916513300009080EstuarineVAVGIINRFLARLEHECPDVSAAHRDDSDASTASSGTVEIGHFH*
Ga0105098_1016592623300009081Freshwater SedimentMLPVLEAMLAGVAVGIINRLLARLEVQCPEDIREEMRRDDSSSSTASSGTVEIPHFH*
Ga0105098_1031582523300009081Freshwater SedimentMLPVLEAMLAGVAVGIINRLLARLEAQCPEDVREEMRRDDSSSSTASSGTVEIPHFH*
Ga0105098_1033589623300009081Freshwater SedimentMLPVLEALLAGVAVGIINRFLARLEAHCPEDIRAEVHRDDSDTSTASSGTVEIPHF*
Ga0105098_1077909613300009081Freshwater SedimentMLPVIEALLAGVAVGIINRFLARLETQCPADIRAEIHRDDSGSSTASSGTVELSHFAG*
Ga0105098_1081629223300009081Freshwater SedimentMLPVLEALLAGVAVGIINRFLARLEAQCPEDLRAEIHRDDSGSSTASSGTVEITHFH*
Ga0102812_1020878923300009086EstuarineMLPVIEALLAGVAVGIINRFLARLEHECPDGSVAHRDDSSTSTASSGTVEIDHFH*
Ga0102812_1030810213300009086EstuarineMLPVIKALLAGVAVGIINRFLARLEHECPDTASTAAHRDDSSTSTASSGTVEIDHFH
Ga0102812_1042014513300009086EstuarineMLLVIEALLAGVAVGIINRFLARLEHECPDAASTAAHRDDSSSSTASSGTVEIGHFH
Ga0102812_1067317423300009086EstuarineMLPILEAIIAGLIVGAANRLLARLEQECPEVRAQMHRDDSGSSTASSGTVEIPHFH*
Ga0102884_109648733300009141EstuarineMLPVIEALLAGVAVGIINRFLARLEHECPDVSAAHRDDSDASTASSGTVEIGHFH*
Ga0105102_1016338823300009165Freshwater SedimentMLPVLEAMLAGVAVGIINRLLARLEVQCPEEIREEMRRDDSSSSTASSGTVEIPHFH*
Ga0105102_1036657823300009165Freshwater SedimentMLPVIEAMVAGVLVGFINRLLARLEQECPEDIRRELHRDDSSTSTASSGTVEMPHFH*
Ga0105097_1051800323300009169Freshwater SedimentMLPILEAMLAGVTVGIINRLLARLEVQCPEDIREEMRRDDSSSSTASSGAVEIPHFH*
Ga0105097_1052732913300009169Freshwater SedimentKERTAANFAAMLPILEAMLAGVAVGFINRLLARLEQECPEDIRREMHRDDSSTSTASSGTVELPHFH*
Ga0105097_1085789223300009169Freshwater SedimentMLPVLEALLAGVAVGIINRFLARLEAHCPEDIRAEVHRDDSDASTASSGTVEIPHF*
Ga0126448_103000823300009466Meromictic PondFAAMLPVIEALLAGVAVGIINRFLARLEHECPDVSAVHRDDSDASTASSGTVEIPHFH*
Ga0127390_114258423300009474Meromictic PondMVPILEAILAGLIVGAANRLLARLEHECPEVAEMRRDDSASSTASSGTVEIPHF*
Ga0129361_10225223300009530Meromictic PondMLPVIEALLAGVAVGIINRFLARLEHECPDVSAAHRDDSDASTASSGTVEIPHSH*
Ga0132221_100196233300009911Meromictic PondFAAMLPVIEALLAGVAVGIINRFLARLEHECPDVSAAHRDDSDASTASSGTVEIGHFH*
Ga0210373_10627623300022360EstuarineSRLREKSAANFVAMLPVIEALLAGVAVGIINRFLARLEHECPDVSAAHRDDSDASTASSGTVEIPHFH
Ga0247724_103166023300024239Deep Subsurface SedimentMLPVLEAMLAGVAVGIINRLLARLEVQCPEDIRQEMRRDDSSSSTASSGTVEIPHFH
Ga0247724_105882023300024239Deep Subsurface SedimentMLPVIEALLAGVAVGIINRFLARLETQCPADIRAEIHRDDSGSSTASSGTV
Ga0244775_1037258123300024346EstuarineMLPVIEALLAGVAVGIINRFLARLEHECPDVSAAHRDDSDASTASSGTVEIGHFH
Ga0244775_1127669823300024346EstuarineKKEPQTKSAANFAAMLPVIEALLAGVAVGIINRFLARLEHECPDISAAHRDDSDASTASSGTVEIGHFH
Ga0244775_1141470023300024346EstuarineMLPVVEALLAGVAVGIINRFLARLEHECPDVSAAHRDDSDASTASSGTVEIPHFH
Ga0208921_102536423300027188EstuarineMLPVIEALLAGVAVGIINRFLARLEHECPDVSAAHRDDSDASTASSGTVEIPHFH
Ga0208674_101880023300027190EstuarineMLPVIEALLAGVAVGIINRFLARLEHECPDVSAVHRDDSDASTASSGTVEIGHFH
Ga0208673_105545713300027192EstuarineMLPVIEALLAGVAVGIINRFLARLEHECPDVSAVHRDDSDASTASSGTVEIPHFH
Ga0208673_106646813300027192EstuarineMLPVIEALLAGVAVGIINRFLARLEHECPDGSAAHRDDSDASTASSGTVEIGHFH
Ga0208922_105135513300027197EstuarineMLPVIEALLAGVAVGIINRFLARLEHECPDGSAAHRDDSSTSTASSGTVEIDHFH
Ga0208163_102857813300027198EstuarineAGVAVGIINRFLARLEHECPDVSAVHRDDSDASTASSGTVEIPHFH
Ga0208176_104444023300027248EstuarineMLPVIEALLAGVAVGIINRFLARLEQECPDVSAAHRDDSDASTASSGTVEIPHFH
Ga0207994_112512713300027416EstuarineMLPVIEALLAGVAVGIINRFLARLEHECPDVSAVHRDDSDASTASSGTVEIPHFQ
Ga0208437_112317623300027525EstuarineAGVAVGIINRFLARLEHECPDVSAAHRDDSDASTASSGTVEIPHFH
Ga0208897_107946123300027571EstuarineMLPVIEALLAGVAVGIINRFLARIEAQCPDAEIHRDDSDASTASSGTVEIPHF
Ga0208305_1012892513300027753EstuarineQKSAANFAAMLPVIEALLAGVAVGIINRFLARLEHECPDVSAAHRDDSDASTASSGTVEIGHFH
Ga0209450_1040643323300027885Freshwater Lake SedimentMLPVLEAMLAGVAVGIINRLLARLEVQCPEDIREEMRRDDSSSSTASSGTVEIPHFH
Ga0334998_0357038_654_8243300034019FreshwaterMLPVLEALLAGVAVGIINRFLSRLEAQCPEDIRAEVHRDDSDASTASSGTVEIPHF
Ga0334998_0390265_511_6843300034019FreshwaterMLPVLEAMVAGVLVGFINRLLARLEQECPEDIRRELHRDDSSTSTASSGTVEMPHFQ
Ga0335019_0612756_129_2993300034066FreshwaterMLPVLEALLAGVAVGIINRFLARLEAQCPEDIRAEVHRDDSDASTASSGTVEIPHF
Ga0335019_0748869_74_2473300034066FreshwaterMLPVIEAMVAGVLVGFINRLLARLEQECPEDIRREMHRDDSSTSTASSGTVEMPHFH
Ga0335019_0858377_78_2513300034066FreshwaterMLPVIEAMVAGVLVGFINRLLARLEQECPEDIRREMHRDDSSTSTASSGTVELPHFH
Ga0310127_115429_12_1643300034072Fracking WaterMLAGVAVGIINRLLARLEVQCPEDIREEMRRDDSSSSTASSGTVEIPHFH
Ga0310127_224623_370_5463300034072Fracking WaterMLPVLEALLAGVAVGIINRFLARLEAQCPADIRAEIHRDDSSASSTASSGTVEMSHFH
Ga0310127_333103_314_4873300034072Fracking WaterMLPVLEAMIAGVAVGIINRLLARLEVQCPEDIRQEMRRDDSSSSTASSGTVEIPHFH
Ga0310130_0247071_119_2893300034073Fracking WaterMLPVLEAILAGLIVGAANRLLARLEQECPEIREQLHRDDSGSSTASSGTVEIAHFH
Ga0310130_0264481_2_1633300034073Fracking WaterMLPVLEAMLAGVAVGIINRLLARLEAQCPEDVREEMRRDDSSSSTASSGTVEIP
Ga0310130_0267659_73_2463300034073Fracking WaterMLPIIEAMLAGVAVGIINRLLARFEVQCPEDIRREMHRDDSSTSTASSGTVELPHFH
Ga0335066_0657360_383_5353300034112FreshwaterMLPVIEAMVAGVLVGFINRLLARLEQECPEDIRREMHRDDSSTSTASSGTV
Ga0335065_0826595_1_1653300034200FreshwaterVLEALLAGVAVGIINRFLARLEAQCPEDIRSEIHRDDSSASTASSGTVEMSHFH
Ga0310128_060634_627_7793300034682Fracking WaterMLPVLEAMLAGVAVGIINRLLARLEVQCPEDIREEMRRDDSSSSTASSGTV

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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