Metagenome Family F100458

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100458
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	106 residues
Representative Sequence	MIDSQKLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGPLTLCDRSFVEHLNELIRGARLKEHRLFHGITGIVPDPDEDEKKSS
Number of Associated Samples	74
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	26.47 %
% of genes near scaffold ends (potentially truncated)	30.39 %
% of genes from short scaffolds (< 2000 bps)	79.41 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (54.902 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (59.804 % of family members)
Environment Ontology (ENVO)	Unclassified (50.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (59.804 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 66.67% β-sheet: 0.00% Coil/Unstructured: 33.33%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF10415	FumaraseC_C	8.82
PF00589	Phage_integrase	2.94
PF02586	SRAP	1.96
PF01075	Glyco_transf_9	0.98
PF00156	Pribosyltran	0.98
PF00072	Response_reg	0.98
PF00121	TIM	0.98
PF13362	Toprim_3	0.98
PF13340	DUF4096	0.98
PF13505	OMP_b-brl	0.98
PF13561	adh_short_C2	0.98
PF02566	OsmC	0.98
PF01068	DNA_ligase_A_M	0.98
PF00583	Acetyltransf_1	0.98
PF13751	DDE_Tnp_1_6	0.98
PF01583	APS_kinase	0.98
PF00571	CBS	0.98
PF14588	YjgF_endoribonc	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	1.96
COG0149	Triosephosphate isomerase	Carbohydrate transport and metabolism [G]	0.98
COG0529	Adenylylsulfate kinase or related kinase	Inorganic ion transport and metabolism [P]	0.98
COG0859	ADP-heptose:LPS heptosyltransferase	Cell wall/membrane/envelope biogenesis [M]	0.98
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.98
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.98
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.98
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.84 %
Unclassified	root	N/A	42.16 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.84 %
Unclassified	root	N/A	42.16 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.90 %
Unclassified	root	N/A	42.16 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	2.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.16 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	35.29 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.94 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	2.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.16 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	32.35 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.94 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	2.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.16 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	26.47 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.94 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	2.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.16 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	14.71 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	5.88 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2.94 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	2.94 %
Aurantimonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae	0.98 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.16 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	14.71 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	5.88 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.94 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	2.94 %
Aureimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Aureimonas	0.98 %
Acidocella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidocella	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.16 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	5.88 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.94 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	2.94 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.96 %
Aureimonas leprariae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Aureimonas → Aureimonas leprariae	0.98 %
Acidocella aminolytica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidocella → Acidocella aminolytica	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.16 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	5.88 %
Streptomyces antimycoticus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces antimycoticus	2.94 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	2.94 %
Bradyrhizobium sp. WSM1417	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM1417	1.96 %
Aureimonas leprariae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Aureimonas → Aureimonas leprariae	0.98 %
Acidocella aminolytica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidocella → Acidocella aminolytica	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10089329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	766	Open in IMG/M
3300002907\|JGI25613J43889_10157308	Not Available	593	Open in IMG/M
3300002917\|JGI25616J43925_10327035	Not Available	569	Open in IMG/M
3300005332\|Ga0066388_100002770	All Organisms → cellular organisms → Bacteria	10947	Open in IMG/M
3300005332\|Ga0066388_103977968	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300005764\|Ga0066903_100355610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM1417	2372	Open in IMG/M
3300005764\|Ga0066903_104287776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	762	Open in IMG/M
3300005764\|Ga0066903_105686400	Not Available	656	Open in IMG/M
3300007258\|Ga0099793_10053747	All Organisms → cellular organisms → Eukaryota	1784	Open in IMG/M
3300007258\|Ga0099793_10117868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1239	Open in IMG/M
3300007265\|Ga0099794_10370719	Not Available	746	Open in IMG/M
3300007788\|Ga0099795_10025956	All Organisms → cellular organisms → Bacteria	1969	Open in IMG/M
3300007788\|Ga0099795_10058590	All Organisms → cellular organisms → Bacteria	1422	Open in IMG/M
3300007788\|Ga0099795_10558999	Not Available	540	Open in IMG/M
3300009038\|Ga0099829_10212870	Not Available	1567	Open in IMG/M
3300009088\|Ga0099830_10430025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1070	Open in IMG/M
3300009089\|Ga0099828_10397562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces antimycoticus	1243	Open in IMG/M
3300009143\|Ga0099792_10126310	Not Available	1380	Open in IMG/M
3300009143\|Ga0099792_11045995	Not Available	547	Open in IMG/M
3300010159\|Ga0099796_10020452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidocella → Acidocella aminolytica	2023	Open in IMG/M
3300010358\|Ga0126370_10252319	Not Available	1369	Open in IMG/M
3300010360\|Ga0126372_10392542	All Organisms → cellular organisms → Bacteria	1263	Open in IMG/M
3300010360\|Ga0126372_11908231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	639	Open in IMG/M
3300010361\|Ga0126378_12593719	Not Available	579	Open in IMG/M
3300010362\|Ga0126377_11524675	Not Available	742	Open in IMG/M
3300010362\|Ga0126377_11848620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	679	Open in IMG/M
3300010366\|Ga0126379_11360213	Not Available	816	Open in IMG/M
3300011269\|Ga0137392_10661510	Not Available	866	Open in IMG/M
3300011269\|Ga0137392_11013997	Not Available	682	Open in IMG/M
3300012096\|Ga0137389_10032680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3791	Open in IMG/M
3300012199\|Ga0137383_10289634	Not Available	1199	Open in IMG/M
3300012199\|Ga0137383_10937867	Not Available	632	Open in IMG/M
3300012200\|Ga0137382_10654968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	752	Open in IMG/M
3300012202\|Ga0137363_10075109	All Organisms → cellular organisms → Bacteria	2500	Open in IMG/M
3300012202\|Ga0137363_10104517	All Organisms → cellular organisms → Eukaryota	2158	Open in IMG/M
3300012203\|Ga0137399_10107618	Not Available	2169	Open in IMG/M
3300012205\|Ga0137362_10563803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces antimycoticus	983	Open in IMG/M
3300012205\|Ga0137362_10697069	Not Available	873	Open in IMG/M
3300012210\|Ga0137378_11480039	Not Available	591	Open in IMG/M
3300012211\|Ga0137377_10005677	All Organisms → cellular organisms → Bacteria	10029	Open in IMG/M
3300012211\|Ga0137377_10046388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4001	Open in IMG/M
3300012361\|Ga0137360_10040029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	3312	Open in IMG/M
3300012361\|Ga0137360_10369422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1204	Open in IMG/M
3300012362\|Ga0137361_10359834	All Organisms → cellular organisms → Eukaryota	1335	Open in IMG/M
3300012582\|Ga0137358_10008398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6344	Open in IMG/M
3300012582\|Ga0137358_10495165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	824	Open in IMG/M
3300012683\|Ga0137398_10121528	Not Available	1668	Open in IMG/M
3300012917\|Ga0137395_10018574	All Organisms → cellular organisms → Bacteria → Proteobacteria	3994	Open in IMG/M
3300012917\|Ga0137395_10812780	Not Available	677	Open in IMG/M
3300012917\|Ga0137395_10950836	Not Available	618	Open in IMG/M
3300012923\|Ga0137359_10203084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1770	Open in IMG/M
3300012924\|Ga0137413_10174759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1424	Open in IMG/M
3300012925\|Ga0137419_10334589	All Organisms → cellular organisms → Bacteria	1167	Open in IMG/M
3300012925\|Ga0137419_10778233	Not Available	781	Open in IMG/M
3300012925\|Ga0137419_10846359	Not Available	750	Open in IMG/M
3300012927\|Ga0137416_10550971	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces antimycoticus	999	Open in IMG/M
3300012929\|Ga0137404_10889193	Not Available	812	Open in IMG/M
3300012930\|Ga0137407_10169789	Not Available	1940	Open in IMG/M
3300012944\|Ga0137410_11483580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	591	Open in IMG/M
3300012971\|Ga0126369_10400455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM1417	1410	Open in IMG/M
3300012971\|Ga0126369_12056012	Not Available	659	Open in IMG/M
3300015242\|Ga0137412_10120292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2128	Open in IMG/M
3300015245\|Ga0137409_10044263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Aureimonas → Aureimonas leprariae	4256	Open in IMG/M
3300015245\|Ga0137409_10128055	All Organisms → cellular organisms → Bacteria	2335	Open in IMG/M
3300017943\|Ga0187819_10875906	Not Available	503	Open in IMG/M
3300017970\|Ga0187783_10027452	All Organisms → cellular organisms → Bacteria	4217	Open in IMG/M
3300017970\|Ga0187783_10069597	Not Available	2591	Open in IMG/M
3300017972\|Ga0187781_10675947	Not Available	746	Open in IMG/M
3300018007\|Ga0187805_10621293	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300019789\|Ga0137408_1158907	Not Available	1177	Open in IMG/M
3300019789\|Ga0137408_1476951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1839	Open in IMG/M
3300020170\|Ga0179594_10131588	Not Available	917	Open in IMG/M
3300020199\|Ga0179592_10215135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	869	Open in IMG/M
3300021086\|Ga0179596_10066376	All Organisms → cellular organisms → Bacteria	1550	Open in IMG/M
3300021170\|Ga0210400_10525851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	976	Open in IMG/M
3300021479\|Ga0210410_11407231	Not Available	590	Open in IMG/M
3300024288\|Ga0179589_10057202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1488	Open in IMG/M
3300026304\|Ga0209240_1059493	All Organisms → cellular organisms → Bacteria	1432	Open in IMG/M
3300026319\|Ga0209647_1227824	Not Available	628	Open in IMG/M
3300026320\|Ga0209131_1002387	All Organisms → cellular organisms → Bacteria	12761	Open in IMG/M
3300026320\|Ga0209131_1079504	All Organisms → cellular organisms → Bacteria	1771	Open in IMG/M
3300026355\|Ga0257149_1017938	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300026355\|Ga0257149_1061584	Not Available	546	Open in IMG/M
3300026356\|Ga0257150_1000665	All Organisms → cellular organisms → Bacteria → Proteobacteria	4513	Open in IMG/M
3300026358\|Ga0257166_1017646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	926	Open in IMG/M
3300026369\|Ga0257152_1016841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	777	Open in IMG/M
3300026498\|Ga0257156_1017942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1395	Open in IMG/M
3300026498\|Ga0257156_1097230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	612	Open in IMG/M
3300026508\|Ga0257161_1009958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1710	Open in IMG/M
3300026514\|Ga0257168_1075047	Not Available	748	Open in IMG/M
3300026551\|Ga0209648_10137711	Not Available	1946	Open in IMG/M
3300026555\|Ga0179593_1004922	All Organisms → cellular organisms → Bacteria → Proteobacteria	3219	Open in IMG/M
3300027512\|Ga0209179_1026416	All Organisms → cellular organisms → Bacteria	1165	Open in IMG/M
3300027512\|Ga0209179_1118990	Not Available	590	Open in IMG/M
3300027643\|Ga0209076_1150536	Not Available	651	Open in IMG/M
3300027862\|Ga0209701_10296830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	929	Open in IMG/M
3300027875\|Ga0209283_10776381	Not Available	591	Open in IMG/M
3300027903\|Ga0209488_10470820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	923	Open in IMG/M
3300028536\|Ga0137415_10040336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	4566	Open in IMG/M
3300031720\|Ga0307469_11293812	Not Available	692	Open in IMG/M
3300032180\|Ga0307471_102649637	Not Available	636	Open in IMG/M
3300032261\|Ga0306920_101677518	Not Available	901	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.04%
Aquatic	Environmental → Aquatic	1.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.04%
Freshwater	Environmental → Aquatic → Freshwater	1.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	90.20%
Loam	Environmental → Terrestrial → Soil → Loam	4.90%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.94%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	68.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.71%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.94%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.96%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	59.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.90%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026358	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B	Environmental	Open in IMG/M
3300026369	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-A	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100893293	3300000597	Forest Soil	SYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYTEEQVKDRKAPLTLCDRSFVEHLNELIRGARLKEHRLFHGITGIVPDPDEDEKKSS*
JGI25613J43889_101573082	3300002907	Grasslands Soil	MIDSKNLKTQTSYSLQLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYTREQVKDRKGPLTLCDRSFVEHLNELIRGARLKEQRLFHGITGIL
JGI25616J43925_103270351	3300002917	Grasslands Soil	MHWAAMIDSKNLKTQTSYSLQLHDVRKAAAAYELMHSAAAMFQMLPVPVLEALRDYTREQVKDRKGPLTLCDRSFVEHLNELMRGARLKEQRLFHGITGIVPNPDEDEKKSS*
Ga0066388_10000277017	3300005332	Tropical Forest Soil	MIDSRTLKTQTSYSLKLHDVRKAAAAYELMHSAAMMLQMLPVPVLEALRDYVQEEVKDRKEPLTLSDRSFVEYLNELMRGACLKEHRLFHGITGIVPDPDEDEKKSN*
Ga0066388_1039779681	3300005332	Tropical Forest Soil	YSLRLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGPLTLCDRSFVEHLNELIRGARLKEHRLFHGITGIVSDPDEDEKKSS*
Ga0066903_1003556101	3300005764	Tropical Forest Soil	QTSYSLRLHDVRKAAAAYELMHSAVALLQMLPVPVLEALRDYVQEQVKDRTGSLTLCDRSFLEHLNELISGACLKEQSLFHGITGIVPHPNEDEKKKG*
Ga0066903_1042877761	3300005764	Tropical Forest Soil	MIDSQTLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVEEEEVKNRKEPLTLCDRSFVEHLDELIRGARLREHRLFHGITGIVPDPEEDEKKSSYGVPPGM*
Ga0066903_1056864002	3300005764	Tropical Forest Soil	AAAAYELMHSAAMMLQMLPVPVLEALRDYVQEEVKDRKEPLTLSDRSFVEYLNELMRGACLKEHRLFHGITGIVPDPDEDEKKSN*
Ga0099793_100537472	3300007258	Vadose Zone Soil	MRWAAMIDSQNLKTQTSYSLKLRDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYTHEQVKDRKGPLTLCDRSFVEHLNELIRGARLKEQRLFHGITGIVPEPDEDEKKSS*
Ga0099793_101178682	3300007258	Vadose Zone Soil	MGGHLKIAPRGLRWAGMIDSQKLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGPLTLCDRSFVEHLNDLIRGARLKEHRLFHGITGIVPDPDEDEKKSS*
Ga0099794_103707191	3300007265	Vadose Zone Soil	MIDSQKLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEAVRDYVQEEEVKDRKGPLTLCDRSFVEHLNDLIRGARLKEHRLFHGITGIVPDPDPDEDEKKSS*
Ga0099795_100259563	3300007788	Vadose Zone Soil	MRWAAMIDSKNLKTQTSYSLQLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYTREQVKDRKGPLTLCDRSFVEHLNELIRGARLKEQRLFHGITGIVPEPDEDEKKSS*
Ga0099795_100585902	3300007788	Vadose Zone Soil	MRWAAMIDSKNLKTQTSYSLQLHDVRKAAAAYELMHSAAAMLQMLPIPVLEALRDYTREQVKDRKGPLTLCDRSFVQHLDELIRGARPREHRLFHGITGIVPDPDEDDKRSS*
Ga0099795_105589991	3300007788	Vadose Zone Soil	MIDSRTLKTQTRYSLKLHDVRKAAAAYELMHSAAALLQMLPVPVLEALRDYVQEEVKDRRGHLTLCERSFVEHLNELISGARLKEQRLFHGITGIVPHPDEDEKKS*
Ga0099829_102128704	3300009038	Vadose Zone Soil	MRWAAMIDSQNLKTQTSYSLKLRDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYTHEQVKDRKGPLTLCDRSFVEHLNELIRGARLKEQRLFHGITGIVPEPDEDEKEKKSS*
Ga0099830_104300251	3300009088	Vadose Zone Soil	SYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYTHEQVKDRKGPLTLCDRSFVEHLNELIRGARLKEQRLFHGITGIVPEPDEDEKKSS*
Ga0099828_103975622	3300009089	Vadose Zone Soil	MRWAAMIDSQNLKTQTSYSLKLRDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYTHEQVKDRKGPLTLCDRSFVEHLNELIRGARLKEQRLFHGITGIVPHPDEDEKKSS*
Ga0099792_101263102	3300009143	Vadose Zone Soil	SLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGPLTLCDRSFVEHLNELIRGGRLKEHRLFHGITGIVPEPDEYEKKSS*
Ga0099792_110459952	3300009143	Vadose Zone Soil	SLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGPLTLCDRSFVEHLNELIRGARLKEHRLFHGITGIVPEPDEDEKEKKSS*
Ga0099796_100204522	3300010159	Vadose Zone Soil	MIDSQKLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGPLTLCDRSFVEHLNDLIRGARLKEHRLFHGITGIVPDPDEDEKKSS*
Ga0126370_102523193	3300010358	Tropical Forest Soil	MRWAAMIDSKTLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYTEEQVKDRKAPLTLCDRSFVEHLNELIRGARLKEQRLFHGITGIVPDPDENENKSS*
Ga0126372_103925421	3300010360	Tropical Forest Soil	MIDSRTLKTQTSHSLKLHDVRKAAAAYELMHSAAMMLQMLPVPVLEALRDYVQEEVKDRKGPLTLCDRSFVEHLNELIRGARLKEHHLFHGITGIVPDPDEDETKSS*
Ga0126372_119082312	3300010360	Tropical Forest Soil	LHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEDVKDRKGPLTLCDRSFVEHLNELIRGARLKEHRLFHGITGIVPDPDEGDKSS*
Ga0126378_125937191	3300010361	Tropical Forest Soil	MIDSKNLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEDVKDRKGPLTLCDRSFLEHLTELIRGARLKEHRLFHGNTGIVPDPDEADKSS*
Ga0126377_115246752	3300010362	Tropical Forest Soil	MIDSRTLKTQTSYSLKLHDVRKAAAAYELMHSAAMMLQMLPVPVLEALRDYVQEEVKDRKEPLTLSDRSFVEYLNELMRGACLKEHRLFHGITGIVPDPDPDEDEKKSN*
Ga0126377_118486201	3300010362	Tropical Forest Soil	LHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKNRKEPLTLCDRSFVEHLDELIRGARLREHRLFHGITGIVPDPEEDEKKSSYGVPPGM*
Ga0126379_113602131	3300010366	Tropical Forest Soil	MIDSRTLKTQTSHSLKLHDVRKAAAAYELMHSAAMMLQMLPVPVLEALRDYVLEEVKDRKEPLTLSDRSFVEYLNELMRGACLKEHRLFHGITGIVPDPDPDEDEKKSN
Ga0137392_106615101	3300011269	Vadose Zone Soil	MIDSQKLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGPLTLCDRSFVEHLNELIRGARLKEHR
Ga0137392_110139971	3300011269	Vadose Zone Soil	LHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYTHEQVKDRKGPLTLCDRSFVEHLNELIRGARLKEQRLFHGITGIVPHPDEDEKKSS*
Ga0137389_100326803	3300012096	Vadose Zone Soil	MIDSQKLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGPLTLCDRSFVEHLNELIRGARLKEHRLFHGITGIVPEPDEDEKKSS*
Ga0137383_102896342	3300012199	Vadose Zone Soil	MIDSRTLKTQTSYSLRLHDVRKAAAAYELMHSAAAMLQMLPLPVLEALRDYVQEEVKERKGPLTLCDRSFVDQLNELVRGERLREHHLFHGITGIVPDPDEDEKKSS*
Ga0137383_109378671	3300012199	Vadose Zone Soil	VAALQPPTAIHPSPLPTDYRNLPRGLRWAGMIDSQKLKTQTSYALKLHDVRKAAAAYELMHSAAAMLQMLPLPVLEALRDYVQEEVKDRKGSLTLCDRSFVEHLDELIRGARLREHRLFHGITGIVPDPDEDEKRSS*
Ga0137382_106549681	3300012200	Vadose Zone Soil	MIDSQKLKTQTSYALKLHDVRKAAAAYELLHSAAAMLQMLPLPVLEALRDYVQEEVKERKGPLTLCDRSFVEQLNELIRGERLKEQRLFH
Ga0137363_100751093	3300012202	Vadose Zone Soil	MRWAAMIDSKNLKTQTSYSLQLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYTREQVKDRKGPLTLCDRSFVEHLNELIRGARLKEQRLFHGITGILPNPDEDEKKCS*
Ga0137363_101045174	3300012202	Vadose Zone Soil	LRDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYTHEQVKDRKGPLTLCDRSFVEHLNELIRGARLKEQRLFHGITGIVPEPDEDEKKSS*
Ga0137399_101076181	3300012203	Vadose Zone Soil	MIDSQKLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGPLTLCDHSFVEHLNELIRGARLKEHRLFHGITGIVPDPDEDEKKSS*
Ga0137362_105638032	3300012205	Vadose Zone Soil	MRWAAMIDSQNLKTQTSYSLKLRDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYTHEQVKDRKGPLTLCDRSFVEHLNELIRGARLKEQRLFHGITGIVP
Ga0137362_106970692	3300012205	Vadose Zone Soil	MIDSRTLKTQTSYSLRLHDVRKAAAAYELMHSAAAMLQMLPLAVLEALRDYVQEEVKERKGPLTLCDRSFVEQLNELIRGERLREHHLFHGITGIVPDPDEDEKKSS*
Ga0137378_114800391	3300012210	Vadose Zone Soil	AYELMHSAAAMLQMLPLPVLEALRDYVQEEVKERKGPLTLCDRSFVEQLNELIRGERLREHHLFHGITGIVPDPDEDEKKSS*
Ga0137377_100056777	3300012211	Vadose Zone Soil	MIDSRTLKTQTSYSLRLHDVRKAAAAYELMHSAAAMLQMLPLPVLEALRDYVQEEVKERKGPLTLCDRSFVEQLNELIRGERLREHHLFHGITGIVPDPDEDEKKSS*
Ga0137377_100463881	3300012211	Vadose Zone Soil	MIDSQKLKTQTSYALKLHDVRKAAAAYELLHSAAAMLQMLPLPVLEALRDYVQEEVKERKGPLTLCDRSFVEQLNELIRGERLKEQRLFHGITGIVPDPDEDEKKSS*
Ga0137360_100400295	3300012361	Vadose Zone Soil	MIDSQKLKAQTSYSLQFHDVRKAAAAYELMHSAAAMLQMLPIPVLEALRDYTSEQVKDRKGPLTLCDRSFVEHLDELIRGARLREHRLFHGITGIVPDPDEDEKKSS*
Ga0137360_103694222	3300012361	Vadose Zone Soil	LTPQKLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGPLTLCDRSFVEHLNDLIRGARLKEHRLFHGITGIVPDPDEDEKKSS*
Ga0137361_103598342	3300012362	Vadose Zone Soil	MRWAAMIDSQNLKTQTSYSLKLRDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYTHEQVKDRKGPLTLCDRSFVEHLNELIRGARLKEQRLFHGITGIVPEPDE
Ga0137358_100083982	3300012582	Vadose Zone Soil	MIDSQKLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGPLTLCDRSFVEHLNDLIRGARLKEHRLFHGITGIVPDPDEDEKKCS*
Ga0137358_104951652	3300012582	Vadose Zone Soil	MRWAAMIDSKNLKTQTSYSLQLHDVRKAAAAYELMHSAAAMLQMLPIPVLEALRDYTREQVKDRKGPLTLCERSFVEHLNELIRGARLKEHRLFHGITGIVPHPDEDEKKSVPT*
Ga0137398_101215282	3300012683	Vadose Zone Soil	MIDSQKLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYTHEQVKDRKGPLTLCDRSFVEHLNELIRGARLKEQRLFHGITGIVPEPDEDEKKSS*
Ga0137395_100185746	3300012917	Vadose Zone Soil	MRWAAMIDSQNLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYTHEQVKDRKGPLTLCDRSFVEHLNELIRGARLKEQRLFHGITGIVPEPDEDEKKSS*
Ga0137395_108127801	3300012917	Vadose Zone Soil	MIDSQKLKAQTSYSLQFHDVRKAAAAYELMHSAAAMLQMLPIPVLEALRDYTSEQVKDRKGPLTLCDRSFVEHLDELIRGARLMEHRLFHGITGIVPDPDEDEKKSS*
Ga0137395_109508362	3300012917	Vadose Zone Soil	MIDSQKLKTQTSYSLKLHDVCKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGPLTLCDRSFVEHLNELIRGARLKEHRLFHGITGIVPDPDEDEKKSS*
Ga0137359_102030844	3300012923	Vadose Zone Soil	YSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGPLTLCDRSFVEHLNELIRGGRLKEHRLFHGITGIVPDPDEDEKKSS*
Ga0137413_101747593	3300012924	Vadose Zone Soil	MIDSQKLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGTLTLCDRSFVEHLNDLIRGARLKEHRLFHGITGIVPDPDEDEKKSS*
Ga0137419_103345891	3300012925	Vadose Zone Soil	MIDSQKLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPLPVLEALRDYVQEEVKDRKGPLTLCDRSFVEHLNELIRGARLKEHRLFHGITAIVPHPDEDAKRSS*
Ga0137419_107782332	3300012925	Vadose Zone Soil	MIDSRTLKTQTRYSLKLHDVRKAAAAYELMHSAAALLQMLPVPVLEALRDYVQEEVKDRRGHLTLCERSFVEHLNELISGARLKEQRLFHGITG*
Ga0137419_108463592	3300012925	Vadose Zone Soil	MRWAAMIDSKNLKTQTSYSLQLHDVRKAAAAYELMHSAAAMLQMLPIPVLEALRDYTREQVKDRKGQLTLCDRSFVQHLDELIRGARPREHRLFHGITGIVPDPDEDNKRSS*
Ga0137416_105509711	3300012927	Vadose Zone Soil	MRWAAMIDSQNLKTQTSYSLKLRDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYTHEQVKDRKGPLTLCDRSFVEHLNELIRGARLKEQRLFHGITGILPNPDEDEKKCS*
Ga0137404_108891932	3300012929	Vadose Zone Soil	MIDSQKLKTQTSYSLKLHDVRKAAAAYKLMHSAAAMLQMLPLPVLEALRDYVQEEVKERKGPLTLCDRSFVEQLNELIRGERLREHHLFHGITGIVPDPDEDEKRSS*
Ga0137407_101697893	3300012930	Vadose Zone Soil	MIDSQKLKTQTSYALKLHDVRKAAAAYELLHSAAAMLQMLPLPVLEALRDYVQEEVKERKGPLTLCDRSFVEQLNELIRGERLREHHLFHGITGIVPDPDEDEKKSS*
Ga0137410_114835802	3300012944	Vadose Zone Soil	MIDSQKLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPLPVLEALRDYVQEEVKDRKGPLTLCDRSFVEHLNELMRGARLKAHRLFHGITGIVPEPDEDEKEKKSS*
Ga0126369_104004552	3300012971	Tropical Forest Soil	MIDSKTLKTQTSYSLRLHDVRKAAAAYELMHSAVALLQMLPVPVLEALRDYVQEQVKDRAGSLTLCDRSFLEHLNELISGACLKEQSLFHGITGIVPHPNEDEKKKG*
Ga0126369_120560121	3300012971	Tropical Forest Soil	LHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYFQEEEVKNRKEPLTLCDRSFVEHLDELIRGARLREHRLFHGITGIVPEPDEDEKKRS*
Ga0137412_101202922	3300015242	Vadose Zone Soil	MIDSQKLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGTLTLCDRSFVEHLNDLIRGARLKEHRLFHGITGIVPDPDEDEKKTS*
Ga0137409_100442631	3300015245	Vadose Zone Soil	KLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGPLTLCDRSFVEHLNELIRGARLKEHRLFHGITGIVPEPDEDEKKSS*
Ga0137409_101280551	3300015245	Vadose Zone Soil	KLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPLPVLEALRDYVQEEVKDRRGHLTLCERSFVEHLNELISGARLKEQRLFHGITGIVPHPDEDEKKS*
Ga0187819_108759061	3300017943	Freshwater Sediment	PGSFGDAFKRTGTCHRGLRWAGMVSSQKLKTQTSYSLKLRDIRKAAAAYELMHSAAVILQMLPVPVLEALRDYVQEEIKDRKGPLTLCDRSFVEHPNELIRGARLKEHRLFHAITGIVPDPGEGEKNS
Ga0187783_100274522	3300017970	Tropical Peatland	VHDVRKAAAAYELMHSAAAILQMLPVPVLEALRDYTDEQLRDRKGPLTLCDRSFLEHLNELIRGARLKEQRLFHGITGIVPHPDEDEKQE
Ga0187783_100695973	3300017970	Tropical Peatland	MIDSQNLKTQTSYSLKLRDVRKAVAAYEFMHSAATMLQMLPVPVLETLRDYVQEEVKDRRGPLTLCDRSFVEHLNELIRGERLREHRLFHGITGIVPDPDEDEKKSS
Ga0187781_106759472	3300017972	Tropical Peatland	PALGTCPRRLRWAGMIDSRTLKNQTSYSLRLHDVRKAAAAYELMHSAAAMLQMLPVSVLEALRDYTQEQVEDRKGRLTLCDRSFVEHLNELIRGERLKEHRLFHGITGVVPHPNEGEKKS
Ga0187805_106212931	3300018007	Freshwater Sediment	RGLRWAGMVSSQKLKTQTSYSLKLRDIRKAAAAYELMHSAAVILPMLPVPVLEALRDYVQEEIKDRKGPLTLCDRSFVEHPNELIRGARLKEHRLFHAITGIVPDPDEGEKNS
Ga0137408_11589072	3300019789	Vadose Zone Soil	MIDSRTLKTQTSYSLRLHDVRKAAAAYELMHSAAAMLQMLPLAVLEALRDYVQEEVKERKGPLTLCDRSFVEQLNELIRGERLREHHLFHGITGIVPDPDEDEKKSS
Ga0137408_14769514	3300019789	Vadose Zone Soil	MIDSQKLKTQTSYALKLHDVRKAAAAYELLHSAAAMLQMLPLPVLEALRDYVQEEVKERKGPLTLCDRSFVEQLNELIRGERLKEQRLFHGITGIVPDPDEDEKKSS
Ga0179594_101315882	3300020170	Vadose Zone Soil	MIDSQKLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPLPVLEALRDYVQEEVKERKGPLTLCDRSFVEQLNELIRGERLREHHLFHGITGIVPDPDEDEKKSS
Ga0179592_102151352	3300020199	Vadose Zone Soil	MIDSQKLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGPLTLCDRSFVEHLNDLIRGARLKEHRLFHGITGIVPDPDEDEKKSS
Ga0179596_100663762	3300021086	Vadose Zone Soil	MRWAAMIDSQNLKTQTSYSLKLRDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYTHEQVKDRKGPLTLCDRSFVEHLNELIRGARLKEQRLFHGITGIVPEPDEDEKKSS
Ga0210400_105258511	3300021170	Soil	MIDSERLKEQTSYSLRLHDVRKAVAAYELMHSAYALMQMLPIPILVALRDYLKEETKDRKDPLTMCNRAFVECINELIAGERLRERRLFEGITGIVPSPEESS
Ga0210410_114072312	3300021479	Soil	ATGAFIEKCLAGTSPGSTRSGFMIDSERLKEQTSYSLRLHDVRKAVAAYELMHSAYALMQMLPIPILVALRDYLKEETKDRKDPLTMCNRAFVECINELIAGERLRERRLFEGITGIVPSPEESS
Ga0179589_100572023	3300024288	Vadose Zone Soil	MIDSQKLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGPLTLCDRSFVEHLNELIRGGRLKEHRLFHGITGIVPEPDEDEKKSS
Ga0209240_10594931	3300026304	Grasslands Soil	MHWAAMIDSKNLKTQTSYSLQLHDVRKAAAAYELMHSAAAMFQMLPVPVLEALRDYTREQVKDRKGPLTLCDRSFVEHLNELMRGARLKEQRLFHGITGIVPNPDEDEKKSS
Ga0209647_12278241	3300026319	Grasslands Soil	LHDVRKAAAAYELMHSAAAMFQMLPVPVLEALRDYTREQVKDRKGPLTLCDRSFVEHLNELMRGARLKEQRLFHGITGIVPNPDEDEKKSS
Ga0209131_10023872	3300026320	Grasslands Soil	MRWAAMIDSKNLKTQTSYSLQLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYTREQVKDRKGPLTLCDRSFVEHLNELIRGARLKEQRLFHGITGILPNPDEDEKKCS
Ga0209131_10795042	3300026320	Grasslands Soil	MRWAAMIDSKNLKTQTSYSLQLHDVRKAAAAYELMHSAAAMLQMLPIPVLEALRDYTREQVKDRKGPLTLCDRSFVQHLDELIRGARPREHRLFHGITGIVPDPDEDDKRSS
Ga0257149_10179381	3300026355	Soil	KTQTRYSLKLHDVRKAAAAYELMHSAAALLQMLPVPVLEALRDYVQEEVKDRRGHLTLCERSFVEHLNELISGARLKEQRLFHGITGIVPHPDEDEKKS
Ga0257149_10615842	3300026355	Soil	MIDSQKLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGPLTLCDRSFVEHLNELIRGGRLKEHRLFHGITGIVQ
Ga0257150_10006657	3300026356	Soil	MIDSRTLKTQTRYSLKLHDVRKAAAAYELMHSAAALLQMLPVPVLEALRDYVQEEVKDRRGHLTLCERSFVEHLNELISGARLKEQRLFHGITGIVPHPDEDEKKS
Ga0257166_10176462	3300026358	Soil	MIDSQNLKTQTSYSLKLRDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYTHEQVKDRKGPLTLCDRSFVEHLNELIRGARLKEQRLFHGITGIVPEPDEDEKKSS
Ga0257152_10168412	3300026369	Soil	MIDSQKLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGPLTLCDRSFVEHLNELIRGARLKEHRLFHGITGIVPDPDEDEKKSS
Ga0257156_10179422	3300026498	Soil	MIDSQKLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGPLTLCDRSFVEHLNELIRGGRLKEHRLFHGITGIVPEPDEYEKKSS
Ga0257156_10972302	3300026498	Soil	DVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYTHEQVKDRKGPLTLCDRSFVEHLNELIRGARLKEQRLFHGITGIVPEPDEDEKKSS
Ga0257161_10099582	3300026508	Soil	MIDSQKLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPAPVLEALRDYVQEEEVKDRKGPLTLCDRSFVEHLNELIRGARLKEHRLFHGITGIVPDPDEDEKKSS
Ga0257168_10750471	3300026514	Soil	MIDSQKLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGPLTLCDRSFVEHLNELIRGARLKEHRLFHGITGIVPDPDEDEKKTS
Ga0209648_101377111	3300026551	Grasslands Soil	MIDSQKKLKAQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEVKDRKGPLTLCERSFVEHLNELIRGARLKEHRLFHGITGIVPRPDEDEKKSVPT
Ga0179593_10049224	3300026555	Vadose Zone Soil	MIDSQKLKTQTTYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGPLTLCDRSFVEHLNELMRGARLKAHRLFHGITGIVPEPDEDEKEKKSS
Ga0209179_10264162	3300027512	Vadose Zone Soil	MIDSKNLKTQTSYSLQLHDVRKAAAAYELMHSAAAMLQMLPIPVLEALRDYTREQVKDRKGPLTLCDRSFVQHLDELIRGARPREHRLFHGITGIVPDPDEDDKRSS
Ga0209179_11189901	3300027512	Vadose Zone Soil	MIDSQKLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGPLTLCDRSFVEHLNELMRGARLKAHRLFHGITGIVPEPDEDEKEKK
Ga0209076_11505361	3300027643	Vadose Zone Soil	MIDSQKLKTQTTYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGPLTLCDRSFVEHLNDLIRGARLKEHRLFHGITGIVPDPDEDEKKSS
Ga0209701_102968302	3300027862	Vadose Zone Soil	MIDSQKLKTQTSYSLKLHDVCKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGPLTLCDRSFVEHLNELIRGARLKEQRLFHGITGIVPEPDEDEKKSS
Ga0209283_107763812	3300027875	Vadose Zone Soil	MIDSQNLKTQTSYSLKLRDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYTHEQVKDRKGPLTLCDRSFVEHLNELIRGARLKEQRLFHGITGIVPHPDEDEKKSS
Ga0209488_104708202	3300027903	Vadose Zone Soil	MIDSKNLKTQTSYSLQLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYTREQVKDRKGPLTLCDRSFVEHLNELIRGARLKEQRLFHGITGILPNPDEDEKKCS
Ga0137415_100403363	3300028536	Vadose Zone Soil	MIDSQKLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGPLTLCDRSFVEHLNDLIRGARLKEHRLFHGITGIVPDPDPDEDEKKSS
Ga0307469_112938122	3300031720	Hardwood Forest Soil	MIDSERLKEQTSYSLRLHDVRKAVAAYELMHSAYALMQMLPIPVLVALRDYLKEETKDRKDPLTMCNRAFVECINELIAGERLRERRLFEGITGIVPSPEESS
Ga0307471_1026496372	3300032180	Hardwood Forest Soil	MIDSQNLKTQTSYSLKLHDVRKAAAAYELMHSAAAMLQMLPVPVLEALRDYVQEEEVKDRKGPLTLCDRSYVEHLNELIRGARLREHRLFHGITGIVPDPDEDEKKSS
Ga0306920_1016775181	3300032261	Soil	MTDSQKKLKAQTSYALKLHDVRKAAAAYELMHSAVVMLQMLPVPVLEALRDYVQEEVKDRKGPLTLCDRSFVEHLNELIRGARLREYHLFH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F100458

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences