Metagenome / Metatranscriptome Family F100494

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100494
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	51 residues
Representative Sequence	PFVEALEAVLETPAGRQLEELRSGVHQDEETRYWQANLLFERVSEQAGHPV
Number of Associated Samples	36
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	23.53 %
% of genes from short scaffolds (< 2000 bps)	23.53 %
Associated GOLD sequencing projects	36
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (76.471 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (71.569 % of family members)
Environment Ontology (ENVO)	Unclassified (72.549 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (76.471 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.63% β-sheet: 0.00% Coil/Unstructured: 49.37%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00011	HSP20	4.90
PF00582	Usp	1.96
PF14329	DUF4386	1.96
PF00781	DAGK_cat	1.96
PF07366	SnoaL	1.96
PF06441	EHN	0.98
PF00196	GerE	0.98
PF01145	Band_7	0.98
PF13474	SnoaL_3	0.98
PF00383	dCMP_cyt_deam_1	0.98
PF00805	Pentapeptide	0.98
PF00027	cNMP_binding	0.98
PF00111	Fer2	0.98
PF03992	ABM	0.98
PF07110	EthD	0.98
PF06348	DUF1059	0.98
PF07883	Cupin_2	0.98
PF03006	HlyIII	0.98
PF13205	Big_5	0.98
PF00561	Abhydrolase_1	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	4.90
COG1597	Phosphatidylglycerol kinase, diacylglycerol kinase family	Lipid transport and metabolism [I]	3.92
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	0.98
COG1272	Predicted membrane channel-forming protein YqfA, hemolysin III family	Intracellular trafficking, secretion, and vesicular transport [U]	0.98
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
All Organisms	root	All Organisms	23.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
cellular organisms	root	All Organisms → cellular organisms	23.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	23.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	22.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	22.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	22.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	22.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	22.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
unclassified Rubrobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae	16.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	16.67 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005562\|Ga0058697_10261772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	810	Open in IMG/M
3300009789\|Ga0126307_10430824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1064	Open in IMG/M
3300009789\|Ga0126307_10540249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	941	Open in IMG/M
3300009789\|Ga0126307_10556889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	926	Open in IMG/M
3300009840\|Ga0126313_10255005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1362	Open in IMG/M
3300009840\|Ga0126313_10695251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	823	Open in IMG/M
3300009840\|Ga0126313_11679985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	530	Open in IMG/M
3300010036\|Ga0126305_10703663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	683	Open in IMG/M
3300010037\|Ga0126304_10299979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1064	Open in IMG/M
3300010038\|Ga0126315_10069718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1955	Open in IMG/M
3300010038\|Ga0126315_10158435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1344	Open in IMG/M
3300010038\|Ga0126315_10184260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1251	Open in IMG/M
3300010038\|Ga0126315_10571451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	727	Open in IMG/M
3300010040\|Ga0126308_10120848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1627	Open in IMG/M
3300010041\|Ga0126312_10636908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	768	Open in IMG/M
3300010042\|Ga0126314_10169442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1529	Open in IMG/M
3300010042\|Ga0126314_10549261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	841	Open in IMG/M
3300010044\|Ga0126310_11230181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	602	Open in IMG/M
3300010045\|Ga0126311_11831678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	515	Open in IMG/M
3300018422\|Ga0190265_10605726	All Organisms → cellular organisms → Bacteria	1214	Open in IMG/M
3300018476\|Ga0190274_11319384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	809	Open in IMG/M
3300030988\|Ga0308183_1019202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1148	Open in IMG/M
3300032002\|Ga0307416_101399776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	805	Open in IMG/M
3300032002\|Ga0307416_102908435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	573	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.22%
Host-Associated	Host-Associated	10.78%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.25%
Plants	Host-Associated → Plants	10.78%
Aquatic	Environmental → Aquatic	1.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.25%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.80%
Freshwater	Environmental → Aquatic → Freshwater	1.96%
Phylloplane	Host-Associated → Plants → Phylloplane	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	84.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.80%
Ice	Environmental → Aquatic → Freshwater → Ice	1.96%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	1.96%
Loam	Environmental → Terrestrial → Soil → Loam	0.98%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	82.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.80%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	1.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.96%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	1.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	71.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	9.80%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	1.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust	0.98%
Hypolithic Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust	0.98%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300012184	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ134 (22.06)	Environmental	Open in IMG/M
3300012188	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ330 (21.06)	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300030496	Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031095	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_158 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031423	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_148 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300034391	Biocrust microbial communities from Mojave Desert, California, United States - 13HMC	Environmental	Open in IMG/M
3300034448	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_115 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034781	Biocrust microbial communities from Mojave Desert, California, United States - 31SMC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J35102_1188738672	3300002568	Soil	ALAAVLETPAGHQLEELRGGPYQHEEARYWQANLLFERVSEQAGHPV*
Ga0058697_102617721	3300005562	Agave	QTPAGHQLEELRGGAHQHEEARYWQANLLFERVSEQAGHPA*
Ga0079216_113592052	3300006918	Agricultural Soil	HAQRTAQPLAEALEAVLETPGGRQLGQLGSGLHQHEEARYWQANLLFERTSERIKQGRAG
Ga0079218_124153701	3300007004	Agricultural Soil	EALGAVLETPAGRQLEELRRGPHQDEEARYWQANLLFERVSEQAMDPVHPV*
Ga0126307_101316783	3300009789	Serpentine Soil	EALEAVLETPAGRQLEKLRSGPHEEEEARYWQANLLFERVSAQAGHPVHPV*
Ga0126307_101812761	3300009789	Serpentine Soil	EPLLEALEAVVETPAGRQLEELRCGPHQEEEMRYWQANLLFERVSEQAGHPVHPS*
Ga0126307_102596031	3300009789	Serpentine Soil	SQRTGQSNASARAAVVETPAGRQLEELRCGAHQHEEVRYWQANLLFKRVSEQAGHPV*
Ga0126307_104308243	3300009789	Serpentine Soil	SQRTGQSNASARAAVVETPAGRQLEELRCGAHQHEEVRYWQANLLFERVSEQAGHPVRPV
Ga0126307_105402493	3300009789	Serpentine Soil	EALEAVLETPAGRQLEELRCGPHRHEETRYWQANMLFERVSEQAGHPVHPAKEE*
Ga0126307_105568891	3300009789	Serpentine Soil	RTGGPFVEALEEVLETPAGRQLEELRCGPHQDEETRYWQANRLFERVSEQAGHPV*
Ga0126307_107938962	3300009789	Serpentine Soil	RALAQRTGEPLVEALEAVLETPAGRQLEELRSGPHEEEEARYWQANLLFERVSEQAGHPVHLV*
Ga0126307_111445551	3300009789	Serpentine Soil	EPLLEALEAVVETPAGRQLEELRSGPHQDEEVRYWQANLLFERVSEQAGHPVHTS*
Ga0126307_111454601	3300009789	Serpentine Soil	EPLLEALEAVVETPAGRQLEELRCGPHQEEEMRYWQANLLFKRVSEQAGHSPPAV*
Ga0126307_112654041	3300009789	Serpentine Soil	RRTGQSLAAARAAVIQTPAGWQLEELRSGLHKDKQACYWQANLLFERVSAQAGHPV*
Ga0126307_113023181	3300009789	Serpentine Soil	WRQARTLARRTGGAFVEALEEVLETPAGRQLEELRCGPHQDEETRYWQANLLFERVSEQAGHPV*
Ga0126313_102550052	3300009840	Serpentine Soil	AGWQLEELRSGLHKDEEARYWQANLLFERVSAQAGHPV*
Ga0126313_104009501	3300009840	Serpentine Soil	ARSLAQLTGGPFVEALEAVLETPAGRQLEELRSGPHQDEEARYWQANLLFERVSEQAGHPV*
Ga0126313_104474961	3300009840	Serpentine Soil	ARAQAQRTGEPFVEALEAVVETPAGRQLKELMCSVHQDEEMRYWQANLLFERVSEQAEHPVDPA*
Ga0126313_106600471	3300009840	Serpentine Soil	TAGWQLEELRSGLHKDEEARYWQANLLFERVSAQAGHPV*
Ga0126313_106952511	3300009840	Serpentine Soil	RQARALAGRTGEPLLEALEAVVETPAGMQLEELRSGPHQDEEMRYWQANLLFARVSEQAGHSPPAV*
Ga0126313_114090201	3300009840	Serpentine Soil	RQLEELRCGPHQKEEASYWQANLLFERVSVQVGHSV*
Ga0126313_116799851	3300009840	Serpentine Soil	PLVEALEAVVETPAGRQLEELRCGPHQDEEMRYWQANLLFERVSEQAGHPLHPV*
Ga0126305_103172461	3300010036	Serpentine Soil	GMQLGQLRSGVHQDEGALYWQANLLFERVSEQAGHPV*
Ga0126305_103366362	3300010036	Serpentine Soil	RQARTLARRTGGAFVEALEEVLETPAGRQLEELRCGPHQDEEMRYWQATLLFERVSKQAGHPVDPA*
Ga0126305_104126271	3300010036	Serpentine Soil	PLVEALKAVLETPAGRQLEELRCGPHQEEEASYWQANLLFERVSEPAGHPVHPV*
Ga0126305_106193912	3300010036	Serpentine Soil	LVEALEAVLETLAGGQLEELRRGPHRHEETRYWQANLLFERVSEQAGHRVRPAKK*
Ga0126305_107036632	3300010036	Serpentine Soil	RGRARRTGQSLAAARAAVIQTPAGWQLEELRSGLHKDEQARYWQANLLFERVSVQAGHPV
Ga0126305_111527971	3300010036	Serpentine Soil	ETPAGRQLEELRCGPHRHEETRYWQANMLFERVSEQAGHPVHPA*
Ga0126305_112431282	3300010036	Serpentine Soil	EAVLETSAGRQLEELRCGVHQDEEARYWQANLLFERVRQQAGHSVHPA*
Ga0126305_112977722	3300010036	Serpentine Soil	AKARTSVIRTAAGSQLEELRIGAHQHEEVRYWQANLLFERVSDQAGHPV*
Ga0126304_102399184	3300010037	Serpentine Soil	FVEALEAIVETPAGRQLEELRCGVHQDEETRYWQANLLFERVSEQAGHPVHTS*
Ga0126304_102999792	3300010037	Serpentine Soil	RTSVIRTAAGSQLEELRIGAHQHEEVRYWQANLLFDRVSDQAGHPV*
Ga0126304_103412744	3300010037	Serpentine Soil	LEALEAVVETPAGRQLEELRCGPHQEEEMRYWQANLLFERVSEQAGHPVHPS*
Ga0126304_110165611	3300010037	Serpentine Soil	ARRTGGAFVEALEEVLETPAGRQLEELRCGPHQDEETRYWQANLLFERVSEQAGHPV*
Ga0126315_100697181	3300010038	Serpentine Soil	ETPAGRQLKELMCSVHQDEEMRYWQANLLFERVSEQAGHPPAAV*
Ga0126315_101584353	3300010038	Serpentine Soil	EALEAVVETPAGRQLEELRCGAHKDEETRYWQANLLSERVSEQAGHPVHPV*
Ga0126315_101842602	3300010038	Serpentine Soil	RTGEPLLEALEAVVETPAGMQLEELRSGPHQEEEARYWQAKLLFERVSEQAGHPV*
Ga0126315_105714511	3300010038	Serpentine Soil	LLEALEAVVETPAGMQLEELRSGPHQEEEARYWQANLLFARVSEEAGHPPAAV*
Ga0126315_106114652	3300010038	Serpentine Soil	GSHEEEEARYWQANLLFERVSEQAGHPVYSVGRLGRG*
Ga0126315_107647891	3300010038	Serpentine Soil	RTGGPFVEALEEVLETPAGRQLEELRCGVHQDEETRYWQANLLFERVSEQAGRPV*
Ga0126309_101092343	3300010039	Serpentine Soil	TGGPFVEALEEVLKTPAGRQLEELRCGVHQDEEMHYWQANLLFERVSEQAGHPVDPA*
Ga0126309_113210481	3300010039	Serpentine Soil	TPAGRQLEELRCGPHQDEETRYWQANLLFERVSEQAGHPV*
Ga0126308_100431264	3300010040	Serpentine Soil	AEARVAVCQTPAGHQLEELRGGPHQHEEARYWQANLLFERESEQAGHPA*
Ga0126308_101208483	3300010040	Serpentine Soil	QARAQAQRTGEPFVEALEAVVETPAGRQLKELMCSVHQDEKVRYWQANLLFERVSEQAGHPPAAV*
Ga0126308_102881932	3300010040	Serpentine Soil	IETPAGRQLEELRCGPHQDEETRYWQANLLFERVSEQAGHLVHPG*
Ga0126308_103153501	3300010040	Serpentine Soil	EALEAVLETPGGRQLEELRSGPHQHEEASYWQANLLFERVSEQARHPV*
Ga0126308_109727061	3300010040	Serpentine Soil	MRAEQTVNEMAQEAVVETPAGRQLEELRSGPHGEEARYWQANLLFERVSEQAGHPV*
Ga0126308_111093491	3300010040	Serpentine Soil	VLQTPAGRQLEELRSGVHQDEEARYWQANLLFERVSELGIL*
Ga0126308_112485901	3300010040	Serpentine Soil	ARRTGEPFVEALEAVLETPAGRQLEELRCGVHQDEEMRYWQANLLFERVSEQAGHPVHTSYK*
Ga0126308_112820102	3300010040	Serpentine Soil	QLEELRCGPHQDEEMRYWQANLLFARVSEQAGHPVDPV*
Ga0126312_104587372	3300010041	Serpentine Soil	RTLARRTGGAFVEALEEVLETPAGRQLEELRCGPHQDEETRYWQANLLFERVSEQAGHPV
Ga0126312_105904962	3300010041	Serpentine Soil	GEPFVEALKAVLETPAGRQLEELRCGPHQHQEASYWQANLLFERVSEQVGHPV*
Ga0126312_106369082	3300010041	Serpentine Soil	LEALEAVVETPAGMQLEELRSGPHQDEEMRYWQANLLFARVSEQAGHSPPAV*
Ga0126312_112463791	3300010041	Serpentine Soil	VEALEAVLETPAGRQLEELRCGLHQDEEARYWQANLLFERVSEQAGHPPPV*
Ga0126314_101019143	3300010042	Serpentine Soil	EAVVETPAGCQLEELRCGPHQDEEARYWQANLLFERVSEQARNPVDPPVDPV*
Ga0126314_101694424	3300010042	Serpentine Soil	PFVEALEAVLETPAGRQLEELRSGVHQDEETRYWQANLLFERVSEQAGHPV*
Ga0126314_105492612	3300010042	Serpentine Soil	RTLAGRTGEPLLEALEAVVETPAGMQLEELRSGPHQEEEARYWQAKLLFERVSEQAGHPV
Ga0126314_111460111	3300010042	Serpentine Soil	LETAAGHQLEELRGGPHQLEEARYWQANLLFERVSEQAGHRV*
Ga0126314_112443001	3300010042	Serpentine Soil	KRTGGAFVEALEEVLETPAGLQLEELRCGAHKDEETRYWQANLLFERVSEQAGHPV*
Ga0126310_103003661	3300010044	Serpentine Soil	QTPAGRQLEELRSGAHQHEEVRYWQANLLFNRVSEQASHPV*
Ga0126310_109008412	3300010044	Serpentine Soil	LEALAAVLETRAGRQLEELRCGPHQEEEARYWQANLLFERVNEPAGRPVHPV*
Ga0126310_109123091	3300010044	Serpentine Soil	SARAAVIQTPAGCQLEELRSGAHRHEEARYWQANLRFERVNAQASHTV*
Ga0126310_112301812	3300010044	Serpentine Soil	AQRTGEPLLEALEAVLETPGGRQLEELRSGPHQHEEASYWQANLLFERVSEQARHPV*
Ga0126311_100713793	3300010045	Serpentine Soil	ETPAGRQLKELMCSVHQDEEMRYWQANLLFERVSEQAEHPVDPA*
Ga0126311_103770803	3300010045	Serpentine Soil	VIQTPAGWQLEELRSGLHRDEEARYWQANLLYERVSAQAGHPV*
Ga0126311_104901552	3300010045	Serpentine Soil	AQAQRTGEPFVEALEAVVETPAGRQLKELMCSVHQDEEMRYWQANLLFERVSEQAGHPPAAV*
Ga0126311_108339692	3300010045	Serpentine Soil	AVLETPAGRQLEELGSGAHQHEEASYWQANLLFERVSAQAGHPV*
Ga0126311_114406602	3300010045	Serpentine Soil	RAWRTGEPVAESLEAVLETPAGSQLGELRRGAHREEEALYWQANMLFERVSEQAGHPVKPGPGLCGLSPT*
Ga0126311_118316781	3300010045	Serpentine Soil	VETPAGRQLEELRCGAHQDEEVRYWQANLLFERVRQQAGHPVHPV*
Ga0126306_104252651	3300010166	Serpentine Soil	EAVVETPAGRQLEELRCGPHHDEEARYWQPNLLFERVRQQGGHFVHPL*
Ga0126306_107201203	3300010166	Serpentine Soil	QLEELRCGPHQDEETRYWQANLLFERVSEQAGHPVHTS*
Ga0126306_107874941	3300010166	Serpentine Soil	TSVIRTAAGSQLEELRIGAHQHEEVRYWQANLLFDRVRDQAGHPV*
Ga0126306_108504641	3300010166	Serpentine Soil	VIQTPAGWQLEELRSGLHKDEEARYWQANLLFERVSTQAGHPV*
Ga0126306_109243442	3300010166	Serpentine Soil	HASARAAVLETPAGRQLEELRCGPHQDEETRYWQANLLFERVSEQAGHPVHPV*
Ga0126306_111007551	3300010166	Serpentine Soil	TLAQRTGGPLVEALEAVVETPAGRQLEELRCGAHQDEEMRYWQANLLFERVSEQAGHPVDPV*
Ga0126306_117781631	3300010166	Serpentine Soil	LMCSVHQDEEVRYWQANLLFARVSEQAGHPLHPAWK*
Ga0126306_118183862	3300010166	Serpentine Soil	GQSLAKVRTSVIRTAAGSQLEELRIGAHQHEEVRYWQANLLFERVSDQAGHPV*
Ga0136610_13274081	3300012184	Polar Desert Sand	SARAAVLETPAGCQLEGLRSGPHQHEEVRDWQANLLFERVSEQASQPV*
Ga0136618_103213532	3300012188	Polar Desert Sand	AQAQRTGQSHASARAAVLETPAGCQLEVLRSGPHQHEEVRDWQANLLFERVSEQASQPV*
Ga0190265_106057264	3300018422	Soil	CQLEELRSGPHEEEEARYWQANLLFERVSEQAGHPVHPV
Ga0190268_108151041	3300018466	Soil	AGRQLEELRCGPHQDEETRYWQANLLFERVSEQAGHRV
Ga0190268_119405441	3300018466	Soil	LETPAGRQLEELRSGPHQDEEVRYWQANLLFERVSEQAGDPVHPV
Ga0190270_105646851	3300018469	Soil	ARRTGLSFVEALEDVLETPAGRQVEELRSGPHQDEEMRYWQANLLFERVSEQAGHPVHPVEK
Ga0190274_113193841	3300018476	Soil	IQTPAGCQLEELRCGAHQDEEMRYWQANLLFERAGEQARLPV
Ga0190264_112288441	3300019377	Soil	EELRCGPHQDEVARYWQANLLFERVSEQAEQSVHPV
Ga0268240_101367641	3300030496	Soil	KAVLETAAGQQLEELSGGPHQHEEARYWQANLLFERVSEQAGHPV
Ga0308183_10192023	3300030988	Soil	KAQAQRTGQSHASARAAVIQTPAGRQLEELRCGSHRHEEVRYWQANLLFKRVSEQASQPV
Ga0308184_10302432	3300031095	Soil	GQSHASARAAVIQTPAGRQLEELRSGAHQHEEVRYWQANLLFNRVSEQASHPV
Ga0308177_10046112	3300031423	Soil	KTQAQRTGQSHASARADVIQTPAGRQLEELRCGAHQHEEVRYWQANLLFKRVSEQASQPV
Ga0307408_1004144312	3300031548	Rhizosphere	EELRCGPHQDEEVRYWQANLLFERVSEQAGHPPAAV
Ga0307413_111553921	3300031824	Rhizosphere	LLQALEAVVETPAGMQLEELRSGPHQDEEARYWQANLLFARVSEQAGHPPAAV
Ga0307409_1013663251	3300031995	Rhizosphere	QLEELRCGPHRDEETRYWQANLLSERVSEQAGHPVHPV
Ga0307416_1013997762	3300032002	Rhizosphere	GGPFVEALEAVLETPAGRQLEELRSGVHQDEETRYWQANLLFERVSEQAGHPV
Ga0307416_1029059191	3300032002	Rhizosphere	TPAGRQLEDLRRGPHQHEEARYWQANLLFERVSEQAGHPA
Ga0307416_1029084352	3300032002	Rhizosphere	ETPAGRQLEELRCGPHQDEEMRYWQANLLFERVSEQAGHPVDPV
Ga0307414_104565773	3300032004	Rhizosphere	LEAVVETPAGMQLEELRCGPHQDEEVRYWQANLLFERVSEQAGHPPAAV
Ga0307414_107099542	3300032004	Rhizosphere	VLGAVLETPAGMQLGQLSSGPHQDEEARYWQANLLFERVSEQAG
Ga0307415_1001195814	3300032126	Rhizosphere	TGEPLVEALEAVFETPAGRQLEELRCGPHQDEEMRYWQANLLFERVSEQAGHPVHPTPGGSGCAVG
Ga0307415_1024331101	3300032126	Rhizosphere	GSFLEELGSGAHEHEEARYWQANLLFKRATAQARLQR
Ga0334917_116112_406_519	3300034391	Hypolithic Biocrust	GRQLEELRVGLHQHEEVRYWQANLLFKRVSEQASQPI
Ga0370540_03348_644_811	3300034448	Soil	RTGQSHASARADVIQTPAGRQLEELRCGVHQHKEARYWQANLLFKRVSEQASQPV
Ga0334935_070978_811_936	3300034781	Biocrust	VLETEAGQQLAELAEGPHRHEKANYWQANLLFERASKPGIP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100494

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences