Metagenome / Metatranscriptome Family F100541

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100541
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	63 residues
Representative Sequence	VQDAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAGWFKLGAPALPSAEGEKSTQAG
Number of Associated Samples	67
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	51.96 %
% of genes near scaffold ends (potentially truncated)	47.06 %
% of genes from short scaffolds (< 2000 bps)	88.24 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (52.941 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (38.235 % of family members)
Environment Ontology (ENVO)	Unclassified (57.843 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.961 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 49.44% β-sheet: 0.00% Coil/Unstructured: 50.56%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF04392	ABC_sub_bind	5.88
PF03631	Virul_fac_BrkB	1.96
PF00929	RNase_T	0.98
PF04828	GFA	0.98
PF05721	PhyH	0.98
PF03704	BTAD	0.98
PF13185	GAF_2	0.98
PF02922	CBM_48	0.98
PF13699	DUF4157	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	5.88
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	1.96
COG3629	DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain	Transcription [K]	0.98
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.98
COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	Transcription [K]	0.98
COG5285	Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
All Organisms	root	All Organisms	47.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
cellular organisms	root	All Organisms → cellular organisms	47.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	47.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	40.20 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	4.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	37.25 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.90 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.59 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.96 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.96 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	1.96 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.96 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.90 %
unclassified Desulfobacterales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales	1.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.96 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.90 %
Desulfobacterales bacterium CG07_land_8_20_14_0_80_52_14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium CG07_land_8_20_14_0_80_52_14	1.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.96 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000559\|F14TC_105555067	Not Available	559	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10088685	Not Available	770	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10097815	Not Available	725	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1065673	Not Available	641	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1068094	Not Available	628	Open in IMG/M
3300000955\|JGI1027J12803_101312762	Not Available	529	Open in IMG/M
3300000956\|JGI10216J12902_111614276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	690	Open in IMG/M
3300001867\|JGI12627J18819_10214574	Not Available	776	Open in IMG/M
3300004268\|Ga0066398_10013333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1259	Open in IMG/M
3300005332\|Ga0066388_100354288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2114	Open in IMG/M
3300005332\|Ga0066388_108229998	Not Available	520	Open in IMG/M
3300005363\|Ga0008090_15865294	Not Available	629	Open in IMG/M
3300005467\|Ga0070706_100163499	Not Available	2078	Open in IMG/M
3300005468\|Ga0070707_100582685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1081	Open in IMG/M
3300005713\|Ga0066905_100208232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1468	Open in IMG/M
3300005764\|Ga0066903_100571608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1947	Open in IMG/M
3300005764\|Ga0066903_100703209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1782	Open in IMG/M
3300005764\|Ga0066903_101709784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1198	Open in IMG/M
3300005764\|Ga0066903_102407726	Not Available	1018	Open in IMG/M
3300005764\|Ga0066903_103411159	Not Available	857	Open in IMG/M
3300005764\|Ga0066903_103515409	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	844	Open in IMG/M
3300005764\|Ga0066903_104513304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	742	Open in IMG/M
3300005764\|Ga0066903_104573103	Not Available	737	Open in IMG/M
3300005764\|Ga0066903_108834203	Not Available	511	Open in IMG/M
3300006028\|Ga0070717_10986969	Not Available	767	Open in IMG/M
3300006871\|Ga0075434_100779719	Not Available	972	Open in IMG/M
3300010043\|Ga0126380_10127995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1583	Open in IMG/M
3300010046\|Ga0126384_10960851	Not Available	775	Open in IMG/M
3300010359\|Ga0126376_10364409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1287	Open in IMG/M
3300010361\|Ga0126378_11420463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	786	Open in IMG/M
3300010362\|Ga0126377_11836052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	682	Open in IMG/M
3300010376\|Ga0126381_102007273	Not Available	834	Open in IMG/M
3300010376\|Ga0126381_102594692	Not Available	725	Open in IMG/M
3300012211\|Ga0137377_11555470	Not Available	586	Open in IMG/M
3300012948\|Ga0126375_10884938	Not Available	716	Open in IMG/M
3300016294\|Ga0182041_10504918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1049	Open in IMG/M
3300016319\|Ga0182033_10495370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1049	Open in IMG/M
3300016357\|Ga0182032_10224746	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium CG07_land_8_20_14_0_80_52_14	1444	Open in IMG/M
3300016357\|Ga0182032_10838389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	779	Open in IMG/M
3300016371\|Ga0182034_10712207	Not Available	854	Open in IMG/M
3300016371\|Ga0182034_10873744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	772	Open in IMG/M
3300016404\|Ga0182037_10652517	Not Available	897	Open in IMG/M
3300016445\|Ga0182038_11387185	Not Available	629	Open in IMG/M
3300021560\|Ga0126371_11730797	Not Available	748	Open in IMG/M
3300021560\|Ga0126371_12525980	Not Available	622	Open in IMG/M
3300025910\|Ga0207684_10114800	All Organisms → cellular organisms → Bacteria	2306	Open in IMG/M
3300025910\|Ga0207684_11146160	Not Available	646	Open in IMG/M
3300025915\|Ga0207693_10310819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1234	Open in IMG/M
3300025915\|Ga0207693_10799665	Not Available	727	Open in IMG/M
3300025922\|Ga0207646_10544433	Not Available	1044	Open in IMG/M
3300027874\|Ga0209465_10054334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1921	Open in IMG/M
3300031543\|Ga0318516_10084552	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1775	Open in IMG/M
3300031543\|Ga0318516_10277248	Not Available	969	Open in IMG/M
3300031564\|Ga0318573_10406997	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	731	Open in IMG/M
3300031564\|Ga0318573_10458412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	686	Open in IMG/M
3300031564\|Ga0318573_10481102	Not Available	668	Open in IMG/M
3300031572\|Ga0318515_10002506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6973	Open in IMG/M
3300031572\|Ga0318515_10059076	Not Available	1947	Open in IMG/M
3300031573\|Ga0310915_10044235	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium CG07_land_8_20_14_0_80_52_14	2848	Open in IMG/M
3300031640\|Ga0318555_10690962	Not Available	551	Open in IMG/M
3300031680\|Ga0318574_10591054	Not Available	651	Open in IMG/M
3300031681\|Ga0318572_10431739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	783	Open in IMG/M
3300031713\|Ga0318496_10742011	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541	Open in IMG/M
3300031719\|Ga0306917_10069573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2435	Open in IMG/M
3300031719\|Ga0306917_10854318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	713	Open in IMG/M
3300031719\|Ga0306917_11292935	Not Available	564	Open in IMG/M
3300031719\|Ga0306917_11526751	Not Available	513	Open in IMG/M
3300031723\|Ga0318493_10260933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	927	Open in IMG/M
3300031751\|Ga0318494_10176102	Not Available	1212	Open in IMG/M
3300031751\|Ga0318494_10542964	Not Available	678	Open in IMG/M
3300031763\|Ga0318537_10195794	Not Available	752	Open in IMG/M
3300031768\|Ga0318509_10209136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1086	Open in IMG/M
3300031797\|Ga0318550_10189690	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	993	Open in IMG/M
3300031797\|Ga0318550_10481194	Not Available	600	Open in IMG/M
3300031832\|Ga0318499_10151912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	903	Open in IMG/M
3300031832\|Ga0318499_10374923	Not Available	546	Open in IMG/M
3300031833\|Ga0310917_10932888	Not Available	583	Open in IMG/M
3300031845\|Ga0318511_10625875	Not Available	503	Open in IMG/M
3300031846\|Ga0318512_10530050	Not Available	598	Open in IMG/M
3300031879\|Ga0306919_10912544	Not Available	673	Open in IMG/M
3300031890\|Ga0306925_10054399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4178	Open in IMG/M
3300031890\|Ga0306925_10095534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3159	Open in IMG/M
3300031890\|Ga0306925_11298348	Not Available	723	Open in IMG/M
3300031890\|Ga0306925_12069205	Not Available	534	Open in IMG/M
3300031896\|Ga0318551_10488649	Not Available	705	Open in IMG/M
3300031912\|Ga0306921_10244271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2103	Open in IMG/M
3300031942\|Ga0310916_10023390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4414	Open in IMG/M
3300031942\|Ga0310916_10874401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	754	Open in IMG/M
3300031946\|Ga0310910_10388941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1104	Open in IMG/M
3300031946\|Ga0310910_11254920	Not Available	573	Open in IMG/M
3300032001\|Ga0306922_11760475	Not Available	611	Open in IMG/M
3300032035\|Ga0310911_10490442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	712	Open in IMG/M
3300032035\|Ga0310911_10521503	Not Available	689	Open in IMG/M
3300032060\|Ga0318505_10022021	All Organisms → cellular organisms → Bacteria	2500	Open in IMG/M
3300032060\|Ga0318505_10091841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1364	Open in IMG/M
3300032060\|Ga0318505_10289949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	772	Open in IMG/M
3300032076\|Ga0306924_10244605	All Organisms → cellular organisms → Bacteria → Proteobacteria	2060	Open in IMG/M
3300032090\|Ga0318518_10479235	Not Available	637	Open in IMG/M
3300032091\|Ga0318577_10471123	Not Available	599	Open in IMG/M
3300032094\|Ga0318540_10237327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	880	Open in IMG/M
3300033289\|Ga0310914_11318597	Not Available	624	Open in IMG/M
3300033290\|Ga0318519_10567475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	687	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.02%
Host-Associated	Host-Associated	0.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.02%
Plants	Host-Associated → Plants	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.02%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.49%
Loam	Environmental → Terrestrial → Soil → Loam	23.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	61.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.71%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.84%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.96%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	38.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	13.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.84%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.98%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TC_1055550671	3300000559	Soil	VQDGEGFAVIWRNAQRARGELLGIWFVRLVSRLSTLSHAGWFKLGAPARPAAEREKSTQTG*
AF_2010_repII_A1DRAFT_100886852	3300000597	Forest Soil	VQDDEGFAVIWRNAQRARGELLGVWCSRLVSRLWKFSDAGWFKLGARHVLRPAERRESTQV*
AF_2010_repII_A1DRAFT_100978152	3300000597	Forest Soil	MRSNRKEAHVQDAEGFAVIWRNAQRARSELLGSWLVRLVSRLSTLSHAAWFKLGAPVLPSAKREKSMQAS*
AF_2010_repII_A100DRAFT_10656731	3300000655	Forest Soil	VQDDEGFAVIWRNAQRARGELLGVWCSGLVSRLRKFSNAGWFKLGAPRLASAER
AF_2010_repII_A100DRAFT_10680941	3300000655	Forest Soil	MQEAKGFAVIWRNARRARSELFGIWFVRLVSRLSTLSHADWFKLGAPALPAAEREKSTQAS*
JGI1027J12803_1013127621	3300000955	Soil	MRSNRKQAHVQDAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHANWFKLGAPALPSAEREKSTQAR*
JGI10216J12902_1116142762	3300000956	Soil	FAVIWRNAQRARGELLGIWFVRLVSRLSTLSHAGWFKLGAPARPAAEREKSTQTG*
JGI12627J18819_102145742	3300001867	Forest Soil	MTAQAYVSPLVMEAHVQDDEGFAVIWRNAQRARGEVLDVWCSRLVSRLRQLSKAGWFKLGAPRLASAERRQSTQDG*
Ga0066398_100133332	3300004268	Tropical Forest Soil	MQDAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAGWFKLGAPARPSAEREKSTQTG*
Ga0066388_1003542882	3300005332	Tropical Forest Soil	VQDTEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAGWFKLGSPALPSAEREKSTQAG*
Ga0066388_1082299982	3300005332	Tropical Forest Soil	RNAQRARSELLGIWFVRLVSRLSTLSHADWFKLGAPALPPAEREKSTQAG*
Ga0008090_158652942	3300005363	Tropical Rainforest Soil	VQDAEGLAVIWRNAQRARSELFGIWFVRFVSRLSTLTHADWFKLGAPALPSAEREKSTQAG*
Ga0070706_1001634992	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VQDDEGFAVIWRNAQRARGELLGVWCSRLVSRLWKFSNAGWFKLADTPRLASAERRESTQDG*
Ga0070707_1005826852	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MRSNRKQAHVQDAEGFAVIWHNAQRARSELLGIWFVRLVSRLSTLSHADWFKLGAPALPSAQREKSTQAGQPHRQS*
Ga0066905_1002082324	3300005713	Tropical Forest Soil	MTAQNARSTGWGHTVQDDEGFAVIWRNAQRARGELLGIWFARLVSRLSTLSHAGWFKLEAPALPSAEREKSTQ
Ga0066903_1005716083	3300005764	Tropical Forest Soil	VQDDEGFAVIWRNAQRARGELLCVWCSRLVSRLWKFSNAGWFKLGAPRLASVERGESTQDG*
Ga0066903_1007032094	3300005764	Tropical Forest Soil	MEIHVQDDEGFAVIWRNAQRARGELIGVWCSRLVSRLRKFSNASWFKLGAPVLRAERRESTQDG*
Ga0066903_1017097843	3300005764	Tropical Forest Soil	VQDAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAGWFKLGAPALPSAEGEKSTQAG*
Ga0066903_1024077263	3300005764	Tropical Forest Soil	VQDDEGFAVIWRNAQRARSELLGVWFSRVVRGLLTLSHAGWFKLGAPRLPSAERGETTKAG*
Ga0066903_1034111592	3300005764	Tropical Forest Soil	VQDAEGFADIWRNAQRARSELLGSWLVRLVSRLSTLSHAAWFKLGAPVLPSAKREKSTQAG*
Ga0066903_1035154092	3300005764	Tropical Forest Soil	MQDDEGFAVIWRNAQRARGELLGVWCSRLVSKLWQFSNAGWFKLGDTPRLASERRESTQDG*
Ga0066903_1045133042	3300005764	Tropical Forest Soil	MRSNRKEADVQDAEAFAVIWRNAQRARSELLDSRVVRLVSRLSTLSHAAWFIGAPVLPSAKREKSTQAG*
Ga0066903_1045731032	3300005764	Tropical Forest Soil	MQDAEGFAVISRNAQRARSELLGIWFVRLVSRLSTLSHADWFKLGAPALPPAEREKSTQAG*
Ga0066903_1088342031	3300005764	Tropical Forest Soil	MRSNRKQAYVQDAEGFAVTWRNAQRARSEFLGIWFVRLVSRLSTLSHAGWFGAPARPSVEREKSTQTG*
Ga0070717_109869692	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRSNRKQAHVQDAEGFAVIWHNAQRARSELLGIWFVRLVSRLSTISHAGWFKLGAPALPSAEREKSTQV
Ga0075434_1007797192	3300006871	Populus Rhizosphere	MRSNRKQAHVQDAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHADWFKLGAPAL
Ga0126380_101279951	3300010043	Tropical Forest Soil	MQDAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAGWFKLRAPALPSEEREKSTQVG*
Ga0126384_109608512	3300010046	Tropical Forest Soil	MQDAERFAVIWRNAQRARGELLGIWFVRLVSRLSTLSHAGWFKLRAPALPSEEREKSTQVG*
Ga0126376_103644091	3300010359	Tropical Forest Soil	MRSNRWEAHVQDAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAGWFKLGAPARPSAEREKSTQTG*
Ga0126378_114204632	3300010361	Tropical Forest Soil	SNRKEAQVQDDEGFAVIWRNAQRARSELLGVWFSRVVRGLLTLSHAGWFKLGAPRLPSAERGETTKAG*
Ga0126377_118360521	3300010362	Tropical Forest Soil	EKAPMQGDEGFAVIWCKAQRARGELLGIWFVRLVRRLSTLSHAGWFKLEAPALPSAEREKSTQAG*
Ga0126381_1020072732	3300010376	Tropical Forest Soil	MQDDEGFAVIWRNAQRARGELLGVWCSRLVSRLWQFSNAGWFKLGDTPRLASERRESTQDG*
Ga0126381_1025946921	3300010376	Tropical Forest Soil	MKGSAFGAMRNAQRARSELLGIWCSRLVSRLWKFSNAGWFKLGALRLASAERRESTQDG*
Ga0137377_115554701	3300012211	Vadose Zone Soil	MEAHVQDDEGFAVIWRNAQRARGELLGVWCSRLVSSLWKFSNAGWFKLADTPRLASAERRESTQDG*
Ga0126375_108849382	3300012948	Tropical Forest Soil	MQGAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAGWFKLGAPARPSAEREKSTQTG*
Ga0182041_105049182	3300016294	Soil	MQDAEGFAVIWRNAQRARSEFLGIWFVRLVSRLSTLSQADWFKLGAPALPSAEREKSTQA
Ga0182033_104953701	3300016319	Soil	MTAQAPVYAFNRKEAHVQDGEGFAVIWRNAQRARSELLGVWFLRLVRRLSRLSQAGWFKLGTPSLPSAERGESTQAG
Ga0182032_102247463	3300016357	Soil	HVQDDEGFAVIWRNAQRARGELLGVWCSRLVNTLWQFSNADWFKLGAPRLASAERRESTQDG
Ga0182032_108383892	3300016357	Soil	KEAHVQDAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAGWFKLRAPALPSAEREKSTQAG
Ga0182034_107122071	3300016371	Soil	MEASVQDDEGFAVIWRNAQRARGKLLGVWCSRFVSRLWKFSNAGWFKLGAPRLASVERGESTQDG
Ga0182034_108737442	3300016371	Soil	HMQDADGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAGWFKLGAPARPSAEREKSTQTG
Ga0182037_106525171	3300016404	Soil	VQDAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAAWFKLGAPALPPAE
Ga0182038_113871851	3300016445	Soil	MQDAEGFAVIWRNAQRARSEFLGIWFVRLVSRLSTLSHASWFKLGAPARLSAEREKSTQT
Ga0126371_117307972	3300021560	Tropical Forest Soil	MQDAEGFAVIWRNAQRARSELLGSWLVRLVSRLSTLSHAGWFKLGAPARPSAEREKSTQT
Ga0126371_125259802	3300021560	Tropical Forest Soil	VQDDEGFAVIWRNAQRARSELLGVWFSRVVRGLLTLSHAGWFKLGAPRLPSAERGETTKA
Ga0207684_101148004	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VQDDEGFAVIWRNAQRARGELLGVWCSRLVSRLWKFSNAGWFKLADTPRLASAERRESTQDG
Ga0207684_111461601	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VHAFNRKEADVQDGEGFAVIWRNAQRARSELLGVWFSRLGRRLWTLSHAGWSSSGHPRLPSAERGESTQAG
Ga0207693_103108193	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VQDDEGFVIWRNAQRARGELLAVWCSRFVSRLWKFSNAGWFKLGAARLASAERRESTQDG
Ga0207693_107996652	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MTAQAYVSPLVMEAHVQDDEGFAVIWRNAQRARGELLGVWCSRLVSRLWKFSNAGWFKLADTPRLASAERRESTQDG
Ga0207646_105444331	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VQDDEGFAVIWRNAQRARGELLGVWCSRLVSRLWKFSNAGWFKLADTPRLASAERRASTQDG
Ga0209465_100543343	3300027874	Tropical Forest Soil	MQDAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAGWFKLGAPARPSAEREKSTQT
Ga0318516_100845522	3300031543	Soil	VQGDEGFAVIWRNAQRARGELLGVWCSRLVSRLWKFSDAGWFKFGDTPRLASAERRESTQDG
Ga0318516_102772482	3300031543	Soil	MQDAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAGWFKLEAPALPSEEREKSTQV
Ga0318573_104069972	3300031564	Soil	VQGDEGFAVIWRNAQRARGELLGVWCSRLVSRLWKFSDAGWFKFGDTPRLASAERRESRQDG
Ga0318573_104584121	3300031564	Soil	VQDDEGFAVIWRKAQRARGELLGVWCSRLVSRLWKFSNAGWFKLGAPRLASVERGESTQD
Ga0318573_104811022	3300031564	Soil	MQDADGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAGWFKLGAPARPSAEREK
Ga0318515_100025069	3300031572	Soil	VQDAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAGWFKLRAPALPSAEREKSTQA
Ga0318515_100590763	3300031572	Soil	MQDAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAGWFKLRAPALPSEEREKSTQV
Ga0310915_100442353	3300031573	Soil	VQNDEGFAVIWRNAQRARGELLGVWCSRLVSRLWKFSDAGWFKLGARHVLRPAERRESTQ
Ga0318555_106909621	3300031640	Soil	MQDAEGFAVIWRNAQRARSEFLGIWFVRLVSRLSTLSHAGWFKLEAPALPSEEREKSTQV
Ga0318574_105910542	3300031680	Soil	EIHVQDDEGFAVIWRSAQRARGELLGVWCSRLVNRLWQFSNAGWFKLGAPRLASAERRESTQDG
Ga0318572_104317391	3300031681	Soil	HRKEAHVQDAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLNHAGWFKLGAPALPSAEREKSTQAG
Ga0318496_107420112	3300031713	Soil	VQGDEGFAVIWRNAQRARGELLGVWCSRLVSRLWKFGDAGWFKLGDTPRLASAERRESTQDG
Ga0306917_100695731	3300031719	Soil	AIKRRPSSLELPFHVSSSYASNRKEAQVQDDEGFAVIWRNAQRARSELLGVWFSRVVRRLLTLSHAGWFKLRAPRLPSAERGETTKAG
Ga0306917_108543181	3300031719	Soil	FNWMEAPVQDDEGFAVIWRNAQRARGELLGVWCSRFVSRLWKFSNAGWFKLGAPRLASVERGESTQDG
Ga0306917_112929352	3300031719	Soil	DAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAGWFKLEAPALPSEEREKSTQVG
Ga0306917_115267512	3300031719	Soil	KEAHMQDAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAGWFKLGAPARPSAEREKSTQTG
Ga0318493_102609333	3300031723	Soil	EAHVQDAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLNHAGWFKLGAPALPSAEREKSTQAG
Ga0318494_101761021	3300031751	Soil	MQDAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAGWFKLRAPALPSAEREK
Ga0318494_105429642	3300031751	Soil	MQDAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAGWFKLGAPARPSAEREKATQT
Ga0318537_101957943	3300031763	Soil	VQDDEGFAVIWRNARRARGELLGVWCSRLVSRLWKFGDAGGFKLGDTPRLASAER
Ga0318509_102091362	3300031768	Soil	MEAPVQDDEGFAVIWRNAQRARGELLGVWCSRFVSRLWKFSNAGWFKLGAPRLASVERGESTQDG
Ga0318550_101896903	3300031797	Soil	VHVQGDEGFAVIWRNAQRARGELLGVWCSRLVSRLWKFSDAGWFKFGDTPRLASAERRESTQDG
Ga0318550_104811941	3300031797	Soil	HVGDDEGFALIWRNAQRARGELLGVWCSRIVSRVWKLSHAGWFKLGAPRLVSTEGGESTQDG
Ga0318499_101519123	3300031832	Soil	DDEGFAVIWRNAQRARSELLGVWFSRVVRRLLTLSHAGWFKLRAPRLPSAERGETTKAG
Ga0318499_103749231	3300031832	Soil	MQDAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHASWFKLGAPARLSAEREKSTQT
Ga0310917_109328881	3300031833	Soil	DAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAGWFKLRAPALPSEEREKSTQVG
Ga0318511_106258752	3300031845	Soil	EAHMQDAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAGWFKLGAPARPSAEREKSTQTG
Ga0318512_105300501	3300031846	Soil	FNRMEARVQDDEAFAVIWRNAQRARGELLGVWCSRLVSRLRKFSSAGWFKLGAPRLASAERRESTQDG
Ga0306919_109125441	3300031879	Soil	MQDADGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAGWFKLGAPARPSAEREKSTQT
Ga0306925_100543991	3300031890	Soil	EAQVQDDEGFAVIWRNAQRARSELLGVWFSRVVRRLLTLSHAGWFKLRAPRLPSAERGETTKAG
Ga0306925_100955344	3300031890	Soil	VQDDEGFAVIWRNARRARGELLGVWCSRLVSRLWKFGDAGGFKLGDTPRLASAERRESTQGPYI
Ga0306925_112983481	3300031890	Soil	MRSNRKEAHVQDAEGFAVIWRNAQRARSELLGSWLVRLVSRLSTLSHADRFKLGAPALPSAEREKSTQAG
Ga0306925_120692051	3300031890	Soil	MQDAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAGWFKLRAPALPSEEREKSTKV
Ga0318551_104886492	3300031896	Soil	MQDAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAGWFKLRAPALPSE
Ga0306921_102442714	3300031912	Soil	DDEGFALIWRNAQRARGELLGVFCSRLVSRVWKLSHAGWFKLGAPRLVSTEGGESTQDG
Ga0310916_100233909	3300031942	Soil	MEVHVQDDEGFAVIWRNAQRARGELLGVWCSRLVSRLRKFSNAGWAKLGAPRLASADRRESTRDG
Ga0310916_108744011	3300031942	Soil	VIWRKAQRARGELLGVWCSRLVSRLWKFSNAGWFKLGAPRLASVERGESTQDG
Ga0310910_103889414	3300031946	Soil	EAHVQDGEGFAVIWRNAQRARSELLGVWFLRLVRRLSRLSQAGWFKLGTPSLPSAERGESTQAG
Ga0310910_112549202	3300031946	Soil	NRKETHMQDAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAGWFKLEAPALPSEEREKSTQVG
Ga0306922_117604751	3300032001	Soil	DRSSSRPTARLCMRSNRKEAHMQDADGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAGWFKLGAPARPSAEREKSTQTG
Ga0310911_104904422	3300032035	Soil	SSLSPLVFCMRSNRKEAHVQDAEGFAVIWRNAQRARSELLGSWLVRLVSRLSTLSHADRFKLGAPALPSAEREKSTQAG
Ga0310911_105215032	3300032035	Soil	ASTFEEVHVQDDEGFAVIWRNAQRARGELLGVWCSRLVSRLWKFSNAGWFKLGAPRLASVERGESTQDG
Ga0318505_100220213	3300032060	Soil	VQDDEGFAVIWRNAQRARSELLGVWFSRVVRRLLTLSHAGWFKLRAPRLPSAERGETTKA
Ga0318505_100918413	3300032060	Soil	MEVHVQDDEGFAVIWRNAQRARGELLGVWCSRLVSRLRKFSNAGWAKLGAPRLASADRRE
Ga0318505_102899492	3300032060	Soil	ETHVQDAEGFAVIWRNAQIARSELLAIWFVRLVSGLSTLSQADWFKLGAPALPSAEREKSTQAG
Ga0306924_102446051	3300032076	Soil	VQDDEGFAVIWRNAQRARGELLGVWCSRLVSRLWKFGDAGWFKLGDTPRLASAERRESTQDG
Ga0318518_104792351	3300032090	Soil	MQDAEGFAVIWRNAQRARSEFLGIWFVRLVSRLSTLSHAGWFKLRAPALPSEEREKSTQV
Ga0318577_104711231	3300032091	Soil	VQNDEGFAVIWRNAQRARGELLGVWCSRLVSRLWKFSDAGWFKLGARHVLRPAERR
Ga0318540_102373272	3300032094	Soil	LYAFREVHVQDDEGFAVIWRNAQRARGELLGVWCSGLVSRLRKFSNAGWFKLGAPRLASAERRESTQVR
Ga0310914_113185972	3300033289	Soil	DAEGFAVIWRNAQRARSELLGIWFVRLVSRLSTLSHAGWFKLGAPARPSAEREKSTQTG
Ga0318519_105674753	3300033290	Soil	HVSSSYASNRKEAQVQDDEGFAVIWRNAQRARSELLGVWFSRVVRRLLTLSHAGWFKLRAPRLPSAERGETTKAG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100541

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences