Metagenome / Metatranscriptome Family F100564

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100564
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	42 residues
Representative Sequence	MIRASIRIGAIGMFGLASAIPAASQSMMQHVDLASPEMASAEM
Number of Associated Samples	78
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	98.04 %
% of genes from short scaffolds (< 2000 bps)	97.06 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (62.745 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (36.274 % of family members)
Environment Ontology (ENVO)	Unclassified (54.902 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.902 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 40.85% β-sheet: 0.00% Coil/Unstructured: 59.15%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01011	PQQ	6.86
PF13360	PQQ_2	3.92
PF04392	ABC_sub_bind	0.98
PF00589	Phage_integrase	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.75 %
All Organisms	root	All Organisms	37.25 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.75 %
cellular organisms	root	All Organisms → cellular organisms	37.25 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.75 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	37.25 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.75 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	36.27 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.75 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	20.59 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.75 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13.73 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	5.88 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.75 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.88 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.96 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.75 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.88 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1.96 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.75 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.88 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1.96 %
unclassified Methylobacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium	1.96 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.98 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.75 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.88 %
Methylobacterium sp. WSM2598	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. WSM2598	1.96 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1.96 %
Bradyrhizobium sp. Ec3.3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	0.98 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_10617494	Not Available	938	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10043598	Not Available	1181	Open in IMG/M
3300000956\|JGI10216J12902_101423330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	512	Open in IMG/M
3300000956\|JGI10216J12902_103793228	Not Available	518	Open in IMG/M
3300004268\|Ga0066398_10184171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	543	Open in IMG/M
3300005332\|Ga0066388_107602004	Not Available	543	Open in IMG/M
3300005332\|Ga0066388_108759424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	502	Open in IMG/M
3300005363\|Ga0008090_10162075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1474	Open in IMG/M
3300005363\|Ga0008090_10197053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	564	Open in IMG/M
3300005363\|Ga0008090_10199163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1040	Open in IMG/M
3300005467\|Ga0070706_100570331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1052	Open in IMG/M
3300005568\|Ga0066703_10754720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. WSM2598	557	Open in IMG/M
3300005713\|Ga0066905_100335771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	1201	Open in IMG/M
3300005713\|Ga0066905_101168479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	686	Open in IMG/M
3300005764\|Ga0066903_103134051	Not Available	895	Open in IMG/M
3300005764\|Ga0066903_108555441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. WSM2598	521	Open in IMG/M
3300006028\|Ga0070717_11436739	Not Available	626	Open in IMG/M
3300006854\|Ga0075425_100474476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1441	Open in IMG/M
3300009012\|Ga0066710_103601020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	584	Open in IMG/M
3300009089\|Ga0099828_11698136	Not Available	555	Open in IMG/M
3300010047\|Ga0126382_11572971	Not Available	608	Open in IMG/M
3300010358\|Ga0126370_11567942	Not Available	629	Open in IMG/M
3300010358\|Ga0126370_11610827	Not Available	621	Open in IMG/M
3300010359\|Ga0126376_10444894	Not Available	1182	Open in IMG/M
3300010360\|Ga0126372_11385682	Not Available	735	Open in IMG/M
3300010360\|Ga0126372_11762884	Not Available	662	Open in IMG/M
3300010361\|Ga0126378_10609732	Not Available	1206	Open in IMG/M
3300010366\|Ga0126379_10737702	All Organisms → cellular organisms → Bacteria → Proteobacteria	1081	Open in IMG/M
3300010366\|Ga0126379_11116461	All Organisms → cellular organisms → Bacteria → Proteobacteria	894	Open in IMG/M
3300010366\|Ga0126379_12320356	Not Available	637	Open in IMG/M
3300010375\|Ga0105239_12675580	Not Available	582	Open in IMG/M
3300010398\|Ga0126383_11175226	Not Available	857	Open in IMG/M
3300010398\|Ga0126383_12805044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	569	Open in IMG/M
3300010398\|Ga0126383_13313126	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	526	Open in IMG/M
3300012202\|Ga0137363_10676565	Not Available	873	Open in IMG/M
3300012211\|Ga0137377_11494315	Not Available	602	Open in IMG/M
3300012918\|Ga0137396_10917856	Not Available	640	Open in IMG/M
3300012948\|Ga0126375_11285400	Not Available	614	Open in IMG/M
3300012955\|Ga0164298_10734552	Not Available	697	Open in IMG/M
3300012960\|Ga0164301_11389797	Not Available	573	Open in IMG/M
3300012971\|Ga0126369_10724842	All Organisms → cellular organisms → Bacteria → Proteobacteria	1073	Open in IMG/M
3300012971\|Ga0126369_11027495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	912	Open in IMG/M
3300012971\|Ga0126369_11653980	Not Available	730	Open in IMG/M
3300016270\|Ga0182036_11007910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	687	Open in IMG/M
3300016294\|Ga0182041_11751135	Not Available	576	Open in IMG/M
3300016319\|Ga0182033_11336549	Not Available	644	Open in IMG/M
3300016341\|Ga0182035_10578379	All Organisms → cellular organisms → Bacteria → Proteobacteria	968	Open in IMG/M
3300016357\|Ga0182032_11504509	Not Available	584	Open in IMG/M
3300016387\|Ga0182040_11041326	Not Available	684	Open in IMG/M
3300016404\|Ga0182037_10831665	Not Available	798	Open in IMG/M
3300016422\|Ga0182039_11039251	Not Available	736	Open in IMG/M
3300016422\|Ga0182039_11191972	Not Available	688	Open in IMG/M
3300016422\|Ga0182039_12062926	Not Available	525	Open in IMG/M
3300016445\|Ga0182038_11693939	Not Available	570	Open in IMG/M
3300027050\|Ga0209325_1001763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1933	Open in IMG/M
3300031564\|Ga0318573_10726807	Not Available	533	Open in IMG/M
3300031573\|Ga0310915_10305541	All Organisms → cellular organisms → Bacteria → Proteobacteria	1124	Open in IMG/M
3300031679\|Ga0318561_10127270	Not Available	1357	Open in IMG/M
3300031679\|Ga0318561_10293196	All Organisms → cellular organisms → Bacteria → Proteobacteria	889	Open in IMG/M
3300031679\|Ga0318561_10354809	Not Available	804	Open in IMG/M
3300031682\|Ga0318560_10171741	Not Available	1152	Open in IMG/M
3300031682\|Ga0318560_10407139	All Organisms → cellular organisms → Bacteria → Proteobacteria	736	Open in IMG/M
3300031682\|Ga0318560_10725296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	537	Open in IMG/M
3300031713\|Ga0318496_10071769	All Organisms → cellular organisms → Bacteria → Proteobacteria	1824	Open in IMG/M
3300031744\|Ga0306918_10594303	All Organisms → cellular organisms → Bacteria → Proteobacteria	867	Open in IMG/M
3300031748\|Ga0318492_10311431	All Organisms → cellular organisms → Bacteria → Proteobacteria	820	Open in IMG/M
3300031763\|Ga0318537_10129542	Not Available	938	Open in IMG/M
3300031764\|Ga0318535_10300306	All Organisms → cellular organisms → Bacteria → Proteobacteria	718	Open in IMG/M
3300031765\|Ga0318554_10402266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	777	Open in IMG/M
3300031768\|Ga0318509_10502499	Not Available	677	Open in IMG/M
3300031770\|Ga0318521_10198654	Not Available	1157	Open in IMG/M
3300031777\|Ga0318543_10468028	Not Available	565	Open in IMG/M
3300031792\|Ga0318529_10089037	Not Available	1382	Open in IMG/M
3300031795\|Ga0318557_10334603	Not Available	695	Open in IMG/M
3300031798\|Ga0318523_10464196	Not Available	628	Open in IMG/M
3300031799\|Ga0318565_10384659	Not Available	680	Open in IMG/M
3300031821\|Ga0318567_10628636	Not Available	610	Open in IMG/M
3300031832\|Ga0318499_10041124	All Organisms → cellular organisms → Bacteria → Proteobacteria	1703	Open in IMG/M
3300031879\|Ga0306919_11168212	Not Available	585	Open in IMG/M
3300031890\|Ga0306925_10588272	All Organisms → cellular organisms → Bacteria → Proteobacteria	1176	Open in IMG/M
3300031894\|Ga0318522_10301075	Not Available	608	Open in IMG/M
3300031897\|Ga0318520_10185463	Not Available	1221	Open in IMG/M
3300031910\|Ga0306923_10700676	All Organisms → cellular organisms → Bacteria → Proteobacteria	1127	Open in IMG/M
3300031910\|Ga0306923_11201621	Not Available	810	Open in IMG/M
3300031912\|Ga0306921_10587976	Not Available	1288	Open in IMG/M
3300031941\|Ga0310912_10649695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	819	Open in IMG/M
3300031942\|Ga0310916_10555848	Not Available	976	Open in IMG/M
3300031947\|Ga0310909_10238436	Not Available	1517	Open in IMG/M
3300031959\|Ga0318530_10015867	Not Available	2510	Open in IMG/M
3300031959\|Ga0318530_10471416	Not Available	521	Open in IMG/M
3300031981\|Ga0318531_10554623	Not Available	520	Open in IMG/M
3300032001\|Ga0306922_10720666	All Organisms → cellular organisms → Bacteria → Proteobacteria	1048	Open in IMG/M
3300032001\|Ga0306922_12081934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	550	Open in IMG/M
3300032041\|Ga0318549_10080705	Not Available	1393	Open in IMG/M
3300032041\|Ga0318549_10503897	Not Available	544	Open in IMG/M
3300032042\|Ga0318545_10017669	Not Available	2237	Open in IMG/M
3300032043\|Ga0318556_10150748	Not Available	1199	Open in IMG/M
3300032052\|Ga0318506_10107543	Not Available	1196	Open in IMG/M
3300032060\|Ga0318505_10384426	Not Available	663	Open in IMG/M
3300032091\|Ga0318577_10385448	Not Available	670	Open in IMG/M
3300032180\|Ga0307471_101323531	All Organisms → cellular organisms → Bacteria → Proteobacteria	882	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.04%
Host-Associated	Host-Associated	1.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.04%
Plants	Host-Associated → Plants	1.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.04%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	87.25%
Loam	Environmental → Terrestrial → Soil → Loam	10.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	56.86%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.84%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.90%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	36.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.63%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	16.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.86%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.92%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300027050	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_106174942	3300000550	Soil	MRASIWIGAILALASAAPAAAQGMMQHVDLASPDMASAEMTR
AF_2010_repII_A1DRAFT_100435983	3300000597	Forest Soil	MIRASIRIGAIGMFGLASAIPATSQSMMQHVDLASPEMAS
JGI10213J12805_101397653	3300000858	Soil	MRHASIWTTAVAMLGLAWAVPVAGQDMMRHVDLTSPEMTTA
JGI10216J12902_1014233301	3300000956	Soil	MRASIWIGAIGVFALASAVPASAQGMMQHVDLASPEMASAE
JGI10216J12902_1037932281	3300000956	Soil	MMRASIRIGAIGMLGLASVVPAASQGMMQHVDLASPEM
Ga0066398_101841712	3300004268	Tropical Forest Soil	MIRASIRIGAIAMFGLASAIPGASQDMMQHVDLTSPEMASAEMTRA
Ga0066388_1076020042	3300005332	Tropical Forest Soil	MIRASIRIGAIGMFGLACAIPAASQGMMQHVDLASPEMASA
Ga0066388_1087594241	3300005332	Tropical Forest Soil	MHASIWIIGAIGIFTLASGVPAAGQGMMQHVDLTSPEMASAEMTR
Ga0008090_101620751	3300005363	Tropical Rainforest Soil	MRASIWIIGAIAIFALASGVPAAGQGMMQHVDLASPEMASAEMT
Ga0008090_101970531	3300005363	Tropical Rainforest Soil	MIRASIRIGAIGMFGLVSAIPATSQSMMQHVDLASPEMASAEMTR
Ga0008090_101991631	3300005363	Tropical Rainforest Soil	MIRASIRIAAIGMFGLASAIPAASQDMMQHVDLTSPEMASAEM
Ga0070706_1005703312	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MIRASIRIGAIGMFGLASAIPAASQGMMQHVDLASPEMASAEMTRAEV
Ga0066703_107547201	3300005568	Soil	MIRASIRIAAIGMFGLASAIPAASQGMMQHVDLTSPEM
Ga0066905_1003357711	3300005713	Tropical Forest Soil	MIRPSIQIGALVMFGLASAIPGASQDMMQHVDLTSPEMASAEMTR
Ga0066905_1011684791	3300005713	Tropical Forest Soil	MMRASIRIGAIGMFGLACAIPAASQSMMQHVDLASPEMASAEMTRAE
Ga0066903_1031340511	3300005764	Tropical Forest Soil	MMRASIWIGAIGVFALASAVPASAQSMMQHVDLASP
Ga0066903_1085554411	3300005764	Tropical Forest Soil	MIRASIRIGAMAMFGLASAIPGASQDMMRHVDLTSPEM
Ga0070717_114367392	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MMRASIWIGAIGVFALASAVPASAQGMMQHVDLAS
Ga0075425_1004744763	3300006854	Populus Rhizosphere	MMPASIWIIGAMGIFALASGAPAAAQGMMQHVDLASPEMASAEMT
Ga0066710_1036010201	3300009012	Grasslands Soil	MMHASIWIIGAVGIFALASGVPAAGQGMMQHIDLASPEMASAELTR
Ga0099828_116981361	3300009089	Vadose Zone Soil	MIRASIRIAAIGMFGLASAIPAASQGMMQHVDLASPEMASAEMTRA
Ga0126382_115729711	3300010047	Tropical Forest Soil	MIRASIRIGAIGMFGLACAIPAASQGMMQHVDLASPEMASAEMTR
Ga0126370_115679421	3300010358	Tropical Forest Soil	MIGASIRIGAMAMFGLASAIPGASQDMMRHVDLTSP
Ga0126370_116108272	3300010358	Tropical Forest Soil	MHASIWIIGAIGIFALASGVPAAGQGMMQHVDLASPEMASAEMTRADVEAA
Ga0126376_104448941	3300010359	Tropical Forest Soil	MIRASIRIGAIGMFGLACAIPAASQGMMQHVDLASPEM
Ga0126372_113856821	3300010360	Tropical Forest Soil	MIRASIRIGAIGMFGLACAIPAASQGMMQHVDLASPEMASAEM
Ga0126372_117628841	3300010360	Tropical Forest Soil	MIGASIRIGAIAMFGLASAIPGASQDMMQHVDLTSPEM
Ga0126378_106097321	3300010361	Tropical Forest Soil	MIRASIRIGAIGMFGLACAIPAASQGMMQHVDLASPEMA
Ga0126379_107377022	3300010366	Tropical Forest Soil	MMRASIRIGAIAMFGLASAIPGASQDMMQHVDLTSPEMASAEMT
Ga0126379_111164611	3300010366	Tropical Forest Soil	MRRASIRIGAIGMFGLACAIPAASQGMMQHVDLASPEMA
Ga0126379_123203561	3300010366	Tropical Forest Soil	MIRASIRIGAIAMFGLASAIPGASQDMMQHVDLTSPEMASAEMT
Ga0105239_126755801	3300010375	Corn Rhizosphere	MMIRASIWISAIGMFGLASAIPGAAQGMMQHVDLTSPEMTSAE
Ga0126383_111752262	3300010398	Tropical Forest Soil	MIRALIQIGAIAMFGLASAIPGASQGMMEHVDLTSPEMASAEM
Ga0126383_128050442	3300010398	Tropical Forest Soil	MIRASIRIGVIGMFGLASAIPAASQSMMQHVDLTSPEMASAEMTRAD
Ga0126383_133131263	3300010398	Tropical Forest Soil	MMHASIWIIGAIGIFTLASGVPAAGQGMMQHVDLTSPEMASA
Ga0137363_106765652	3300012202	Vadose Zone Soil	MIRAAIWIGSIGIFGLASAIPGAAQGIMQHVDLAS
Ga0137377_114943151	3300012211	Vadose Zone Soil	MMIRASIRIAAIGMFGLASAIPAASQGMMQHVDLASP
Ga0137396_109178562	3300012918	Vadose Zone Soil	MMRASIWIGAIGVFALASAVPASAQGMMQHVDLASPEMTLAEMT
Ga0126375_112854001	3300012948	Tropical Forest Soil	MIRASIWIAAIGMFGLASAIPAAPQGMMQHVDLASPEMASAEMT
Ga0164298_107345522	3300012955	Soil	MMIRASIWISAIGMFGLASAIPGAAQGMMQHVDLTSPEMTSAEM
Ga0164301_113897972	3300012960	Soil	MMRVSIWIIGALGIFALASGVAAAQGMMQHVDLASPEMASAEMT
Ga0126369_107248422	3300012971	Tropical Forest Soil	MMRASIRIGAIAMFGLASAIPGASQDMMQHVDLTSPEMASA
Ga0126369_110274951	3300012971	Tropical Forest Soil	MIGASIRIGAIAMFGLASAIPGASQDMMQHVDLTSP
Ga0126369_116539801	3300012971	Tropical Forest Soil	MIRASIRIGAIAMFGLASAIPGASQDMMQHVDLTSPEM
Ga0182036_110079101	3300016270	Soil	MIGASIRIGAIAMFGLASAIPGASQDMMQHVDLTSPEMASAEMTR
Ga0182041_117511351	3300016294	Soil	MIRASIRIGAIGMFGLASAIPAASQSMMQHVDLASPEMASAEMTRADV
Ga0182033_113365491	3300016319	Soil	MRRASIRIGAIGMFGLACAIPAASQGMMQHVDLASPEM
Ga0182035_105783791	3300016341	Soil	MRRASIQIGAIVMFGLASAIPGASQDMMQHVDLTSPEM
Ga0182032_115045091	3300016357	Soil	MIRASIRIGAIGMFGLASAIPAASQSMMQHVDLASPEMASAEM
Ga0182040_110413262	3300016387	Soil	MIRASIRIGVIGMLGLASAIPGASQDMMQHVDLASPEMASAEMTRADV
Ga0182037_108316651	3300016404	Soil	MRCASIQIGAIVMFGLASAIPGASQDMMQHVDLTSPEMASAEMTR
Ga0182039_110392511	3300016422	Soil	MIRASIRIGVIGMLGLASAIPGASQDMMQHVDLASPEMASAEMT
Ga0182039_111919722	3300016422	Soil	MRRASIQIGAIVMFGLASAIPGASQDMMQHVDLTSPEMASAEMTRA
Ga0182039_120629261	3300016422	Soil	MIRASIRIGAMAMFGLACAIPGASQDMMQHVDLTSPEMASAEMTRA
Ga0182038_116939391	3300016445	Soil	MIRASIRIGAIAMFGLASAIPGASQDMMQHVDLAS
Ga0209325_10017631	3300027050	Forest Soil	MMRTSIWIIGALGISALASGVAAAQGMMQHVDLASPEMASAE
Ga0318573_107268071	3300031564	Soil	MIGAPIRIGAIAMFGLASAIPGASQDMMHHVDLTS
Ga0310915_103055412	3300031573	Soil	MIRASIRIGAIAMFSLASAIPGASQDMMQHVDLASPEMASAEMTRADVE
Ga0318561_101272702	3300031679	Soil	MIRASIQIGAIGMFGLASAIPAASQSMMQHVDLTSPEMASAEMTRADV
Ga0318561_102931962	3300031679	Soil	MIRASIRIGAIGMFGLACAIPAASQGMMQHVDLASPE
Ga0318561_103548091	3300031679	Soil	MIRASIRIGAIAMFSLASAIPGASQDMMQHVDLASPEMASAEMT
Ga0318560_101717411	3300031682	Soil	MRRASIRIGAIGMFGLACAIPAASQGMMQHVDLASPE
Ga0318560_104071391	3300031682	Soil	MIRASIWIGVIGMFGLASAIPAASQGMMQHIDLASPEMASAEMTRA
Ga0318560_107252961	3300031682	Soil	MMRALVRIGAIGVFALAYAVPASAQGMMQHVDLASPEMASAEMTR
Ga0318496_100717694	3300031713	Soil	MIRASIRIGAIGMFGLACAIPAAPQGMMQHVDLASPEMASAEMR
Ga0306918_105943032	3300031744	Soil	MRRASIQIGAIVMFGLASAIPGASQDMMQHVDLTSPEMASAEMTRADVE
Ga0318492_103114311	3300031748	Soil	MIRASIWIGVIGMFGLASAIPAASQGMMQHIDLASPEMASAEMTRAEVEA
Ga0318537_101295421	3300031763	Soil	MIRASIRIGAMAMFGLASAIPGASQDMMQHVDLTSPEMASAEMTRA
Ga0318535_103003062	3300031764	Soil	MIRASIRIGAIGMFGLACAIPAASQGMMQHVDLASPEMASAEMT
Ga0318554_104022661	3300031765	Soil	MIGAPIRIGAIAMFGLASAIPGTSQDMMHHVDLTSPEMASAEMTR
Ga0318509_105024991	3300031768	Soil	MIRASIRIGAIAMFGLASAIPGASQDMMQHVDLTSPEMASA
Ga0318521_101986541	3300031770	Soil	MIRASIRIGAMAMFGLASAIPGAAQDMMQHVDLTSPEMTSAEMT
Ga0318543_104680281	3300031777	Soil	MIRASIRIGAIAMFGLASAIPGAAQDMMQHVDLTSP
Ga0318529_100890371	3300031792	Soil	MRRASIRIGAIGMFGLACAIPAASQGMMQHVDLASPEMASAEMTR
Ga0318557_103346031	3300031795	Soil	MIRASIRIGAIGMFGLASAIPAASQSMMQHVDLTSPEMASAEMTRADVE
Ga0318523_104641962	3300031798	Soil	MIGAPIRIGAIAMFGLASAIPGASQDMMHHVDLTSPE
Ga0318565_103846591	3300031799	Soil	MIRASIRIGAIGMFGLACAIPAAPQGMMQHVDLASPEMASAEMT
Ga0318567_106286362	3300031821	Soil	MIRASIRIGAIAMFSLASAIPGASQDMMQHVDLASPE
Ga0318499_100411244	3300031832	Soil	MIRASIRIGAIGMFGLACAIPAAPQGMMQHVDLASPEMASAEM
Ga0306919_111682122	3300031879	Soil	MIRASIRIGAIAMFSLASAIPGASQDMMQHVDLTSP
Ga0306925_105882721	3300031890	Soil	MIRASIRIGAIAMFSLASAIPGASQDMMQHVDLASPEM
Ga0318522_103010752	3300031894	Soil	MIRASIRIGAIAMFSLASAIPGASQDMMQHVDLTS
Ga0318520_101854631	3300031897	Soil	MIRASIRIGAIGMFGLASAIPAASQSMMQHVDLAS
Ga0306923_107006762	3300031910	Soil	MRRASIQIGAIVMFGLASAIPGASQDMMQHVDLTSPE
Ga0306923_112016211	3300031910	Soil	MIRASIRIGAIAMFGLASAIPGASQDMMQHVDLTS
Ga0306921_105879762	3300031912	Soil	MIRASIRIGVIGMLGLASAIPGASQDMMQHVDLASPEMASAEMTRAD
Ga0310912_106496952	3300031941	Soil	MIGASIRIGAIAMFGLASAIPGASQDMMQHVDLTS
Ga0310916_105558481	3300031942	Soil	MIRASIRIGAIAMFGLASAIPGAAQDMMQHVDLTSPEMTSAEMT
Ga0310909_102384364	3300031947	Soil	MIRASIRIGAIGMFGLASAIPAASQSMMQHVDLTSPEMASAEMTRADV
Ga0318530_100158671	3300031959	Soil	MIRASIRIGAIAMFGLASAIPGASQDMMQHVDLASPEMASAE
Ga0318530_104714162	3300031959	Soil	MIRASIRIGAIGMFGLASVIPAASQSMMQHVDLASPEMASAEMT
Ga0318531_105546231	3300031981	Soil	MIRASIRIGAIAMFGLASAIPGASQDMMQHVDLTSP
Ga0306922_107206661	3300032001	Soil	MRRASIQIGAIVMFGLASAIPGASQDMMQHVDLTSPEMASAEMT
Ga0306922_120819341	3300032001	Soil	MRRASIRIGAIGMFGLACAIPAASQGMMQHVDLASPEMASAEMTRA
Ga0318549_100807051	3300032041	Soil	MIRASIRIGAIGMFGLACAIPAAPQGMMQHVDLASPEM
Ga0318549_105038971	3300032041	Soil	MIRASIRIGAIAMFGLASAIPGASQDMMQHVDLTSPEMASAEMTR
Ga0318545_100176692	3300032042	Soil	MIRASIRIGAIGMFGLACAIPAASQGMMQHVDLASPEMASAEMTRA
Ga0318556_101507481	3300032043	Soil	MIRASIRIGAIGMFGLASAIPATSQSMMQHVDLASPEMASAEMTRA
Ga0318506_101075432	3300032052	Soil	MRRASIRIGAIGMFGLACAIPAASQGMMQHVDLASPEMASAEMT
Ga0318505_103844262	3300032060	Soil	MIRASIRIGAIAMFSLASAIPGASQDMMQHVDLTSPEMASAEMTRAD
Ga0318577_103854481	3300032091	Soil	MIRASIQIGAIAMFGLASAIPAASQGMMQHVDLTSPEMASAEMTRAE
Ga0307471_1013235311	3300032180	Hardwood Forest Soil	MIRASIRIAAIGMFGLASAIPAASQGMMQHVDLASPEMASA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100564

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences