Metagenome Family F100569

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100569
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	65 residues
Representative Sequence	MVAATDGVARKFAAYVDEPVLAAEPRKGFFVRFMEALMETRRRQARREIAKHAHLLDDSWRQLDL
Number of Associated Samples	75
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.23 %
% of genes near scaffold ends (potentially truncated)	26.47 %
% of genes from short scaffolds (< 2000 bps)	77.45 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (52.941 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (11.765 % of family members)
Environment Ontology (ENVO)	Unclassified (23.529 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.980 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.91% β-sheet: 0.00% Coil/Unstructured: 44.09%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF07045	DUF1330	9.80
PF04392	ABC_sub_bind	4.90
PF12680	SnoaL_2	4.90
PF04964	Flp_Fap	1.96
PF13533	Biotin_lipoyl_2	1.96
PF13458	Peripla_BP_6	0.98
PF00232	Glyco_hydro_1	0.98
PF06147	DUF968	0.98
PF13545	HTH_Crp_2	0.98
PF16868	NMT1_3	0.98
PF08803	ydhR	0.98
PF06568	DUF1127	0.98
PF01590	GAF	0.98
PF02875	Mur_ligase_C	0.98
PF00210	Ferritin	0.98
PF01799	Fer2_2	0.98
PF08734	GYD	0.98
PF00884	Sulfatase	0.98
PF13185	GAF_2	0.98
PF00300	His_Phos_1	0.98
PF01230	HIT	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	9.80
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	4.90
COG3847	Flp pilus assembly protein, pilin Flp	Extracellular structures [W]	1.96
COG2723	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	Carbohydrate transport and metabolism [G]	0.98
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.98
COG5457	Uncharacterized conserved protein YjiS, DUF1127 family	Function unknown [S]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.94 %
Unclassified	root	N/A	47.06 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.94 %
Unclassified	root	N/A	47.06 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.94 %
Unclassified	root	N/A	47.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.06 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	40.20 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.06 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	30.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.06 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.59 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.94 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.06 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.84 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	2.94 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	1.96 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	1.96 %
Kaistiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae	0.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.98 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.06 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.86 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	2.94 %
Azorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium	1.96 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	1.96 %
Bauldia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia	0.98 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.06 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	2.94 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.96 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	1.96 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.98 %
Azorhizobium caulinodans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → Azorhizobium caulinodans	0.98 %
Bauldia litoralis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → Bauldia litoralis	0.98 %
Azorhizobium doebereinerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → Azorhizobium doebereinerae	0.98 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.98 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.06 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	2.94 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	1.96 %
Bradyrhizobium sp. AUGA SZCCT0431	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0431	0.98 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.98 %
Bradyrhizobium sp. CCGUVB23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	0.98 %
Azorhizobium caulinodans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → Azorhizobium caulinodans	0.98 %
Bauldia litoralis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → Bauldia litoralis	0.98 %
Azorhizobium doebereinerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → Azorhizobium doebereinerae	0.98 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.98 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000363\|ICChiseqgaiiFebDRAFT_11233277	Not Available	548	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101751218	Not Available	1088	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1000067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	11550	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1097576	Not Available	515	Open in IMG/M
3300000816\|AF_2010_repII_A10DRAFT_1006504	Not Available	1215	Open in IMG/M
3300004024\|Ga0055436_10154901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → Azorhizobium caulinodans	701	Open in IMG/M
3300004479\|Ga0062595_100035785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	2106	Open in IMG/M
3300004633\|Ga0066395_10603071	Not Available	644	Open in IMG/M
3300005093\|Ga0062594_101590523	Not Available	676	Open in IMG/M
3300005162\|Ga0066814_10095939	Not Available	550	Open in IMG/M
3300005168\|Ga0066809_10023383	Not Available	1266	Open in IMG/M
3300005168\|Ga0066809_10058639	Not Available	876	Open in IMG/M
3300005185\|Ga0066811_1001723	Not Available	1114	Open in IMG/M
3300005218\|Ga0068996_10023943	Not Available	1017	Open in IMG/M
3300005295\|Ga0065707_10218514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	1235	Open in IMG/M
3300005295\|Ga0065707_10391033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	864	Open in IMG/M
3300005332\|Ga0066388_100496796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1857	Open in IMG/M
3300005332\|Ga0066388_100818599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1521	Open in IMG/M
3300005332\|Ga0066388_101310762	All Organisms → cellular organisms → Bacteria → Proteobacteria	1249	Open in IMG/M
3300005332\|Ga0066388_102573023	Not Available	926	Open in IMG/M
3300005332\|Ga0066388_104931824	Not Available	678	Open in IMG/M
3300005713\|Ga0066905_100009128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4578	Open in IMG/M
3300005713\|Ga0066905_100099417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → Bauldia litoralis	1971	Open in IMG/M
3300005713\|Ga0066905_100453980	All Organisms → cellular organisms → Bacteria → Proteobacteria	1054	Open in IMG/M
3300005713\|Ga0066905_100830915	Not Available	803	Open in IMG/M
3300005713\|Ga0066905_100936162	Not Available	760	Open in IMG/M
3300005764\|Ga0066903_100406893	All Organisms → cellular organisms → Bacteria	2243	Open in IMG/M
3300005937\|Ga0081455_10015421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7425	Open in IMG/M
3300005937\|Ga0081455_10046214	Not Available	3780	Open in IMG/M
3300005937\|Ga0081455_10226128	All Organisms → cellular organisms → Bacteria → Proteobacteria	1384	Open in IMG/M
3300005937\|Ga0081455_10302427	Not Available	1147	Open in IMG/M
3300005937\|Ga0081455_10632273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → Azorhizobium doebereinerae	692	Open in IMG/M
3300006047\|Ga0075024_100069654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1498	Open in IMG/M
3300006049\|Ga0075417_10033252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2149	Open in IMG/M
3300006057\|Ga0075026_100438769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	741	Open in IMG/M
3300006853\|Ga0075420_100343809	Not Available	1291	Open in IMG/M
3300009792\|Ga0126374_10488387	Not Available	884	Open in IMG/M
3300009792\|Ga0126374_10901303	Not Available	685	Open in IMG/M
3300010043\|Ga0126380_10014599	All Organisms → cellular organisms → Bacteria	3625	Open in IMG/M
3300010043\|Ga0126380_10370129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1051	Open in IMG/M
3300010047\|Ga0126382_10744046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	828	Open in IMG/M
3300010360\|Ga0126372_10724406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	975	Open in IMG/M
3300010398\|Ga0126383_10467912	All Organisms → cellular organisms → Bacteria → Proteobacteria	1313	Open in IMG/M
3300012948\|Ga0126375_11190659	Not Available	633	Open in IMG/M
3300012987\|Ga0164307_10738003	Not Available	776	Open in IMG/M
3300015371\|Ga0132258_10413878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3352	Open in IMG/M
3300015371\|Ga0132258_10639947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	2673	Open in IMG/M
3300015371\|Ga0132258_12023710	Not Available	1449	Open in IMG/M
3300015371\|Ga0132258_12954590	All Organisms → cellular organisms → Bacteria	1180	Open in IMG/M
3300015372\|Ga0132256_103678627	Not Available	516	Open in IMG/M
3300015374\|Ga0132255_100550999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	1700	Open in IMG/M
3300015374\|Ga0132255_105790557	Not Available	523	Open in IMG/M
3300016270\|Ga0182036_10038225	All Organisms → cellular organisms → Bacteria	2923	Open in IMG/M
3300016270\|Ga0182036_11397032	Not Available	586	Open in IMG/M
3300016294\|Ga0182041_10001773	All Organisms → cellular organisms → Bacteria	10994	Open in IMG/M
3300016294\|Ga0182041_10004075	All Organisms → cellular organisms → Bacteria → Proteobacteria	7758	Open in IMG/M
3300016371\|Ga0182034_10031675	All Organisms → cellular organisms → Bacteria	3310	Open in IMG/M
3300016445\|Ga0182038_11999308	Not Available	525	Open in IMG/M
3300018054\|Ga0184621_10120943	Not Available	936	Open in IMG/M
3300018067\|Ga0184611_1105606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	980	Open in IMG/M
3300018072\|Ga0184635_10014773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2791	Open in IMG/M
3300018072\|Ga0184635_10280388	Not Available	657	Open in IMG/M
3300018073\|Ga0184624_10256284	Not Available	784	Open in IMG/M
3300018074\|Ga0184640_10512657	Not Available	527	Open in IMG/M
3300018081\|Ga0184625_10498476	Not Available	615	Open in IMG/M
3300021344\|Ga0193719_10082679	Not Available	1396	Open in IMG/M
3300021560\|Ga0126371_10719203	Not Available	1146	Open in IMG/M
3300022756\|Ga0222622_11063369	All Organisms → cellular organisms → Bacteria → Proteobacteria	595	Open in IMG/M
3300025985\|Ga0210117_1001172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0431	2637	Open in IMG/M
3300026995\|Ga0208761_1013340	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300027560\|Ga0207981_1014690	Not Available	1402	Open in IMG/M
3300027560\|Ga0207981_1022683	Not Available	1134	Open in IMG/M
3300027821\|Ga0209811_10050175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	1425	Open in IMG/M
3300027873\|Ga0209814_10019017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2776	Open in IMG/M
3300027910\|Ga0209583_10248784	Not Available	783	Open in IMG/M
3300027915\|Ga0209069_10799463	Not Available	563	Open in IMG/M
3300028718\|Ga0307307_10178463	All Organisms → cellular organisms → Bacteria → Proteobacteria	669	Open in IMG/M
3300028720\|Ga0307317_10327249	Not Available	518	Open in IMG/M
3300028784\|Ga0307282_10243259	Not Available	864	Open in IMG/M
3300028799\|Ga0307284_10346912	Not Available	601	Open in IMG/M
3300028807\|Ga0307305_10106521	All Organisms → cellular organisms → Bacteria	1295	Open in IMG/M
3300028824\|Ga0307310_10306397	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300028884\|Ga0307308_10435491	All Organisms → cellular organisms → Bacteria → Proteobacteria	629	Open in IMG/M
3300031170\|Ga0307498_10034939	Not Available	1266	Open in IMG/M
3300031474\|Ga0170818_114199234	Not Available	679	Open in IMG/M
3300031544\|Ga0318534_10369353	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300031545\|Ga0318541_10002000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7833	Open in IMG/M
3300031547\|Ga0310887_10071064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1636	Open in IMG/M
3300031547\|Ga0310887_10228351	Not Available	1028	Open in IMG/M
3300031681\|Ga0318572_10828478	Not Available	550	Open in IMG/M
3300031748\|Ga0318492_10305025	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300031833\|Ga0310917_10026568	All Organisms → cellular organisms → Bacteria → Proteobacteria	3384	Open in IMG/M
3300031910\|Ga0306923_10022852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6646	Open in IMG/M
3300031959\|Ga0318530_10223061	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300031981\|Ga0318531_10252956	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300032013\|Ga0310906_11335267	Not Available	525	Open in IMG/M
3300032017\|Ga0310899_10240333	All Organisms → cellular organisms → Bacteria → Proteobacteria	819	Open in IMG/M
3300032060\|Ga0318505_10575057	Not Available	530	Open in IMG/M
3300033433\|Ga0326726_10009666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8535	Open in IMG/M
3300033433\|Ga0326726_10022956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5423	Open in IMG/M
3300033433\|Ga0326726_11570032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	641	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.29%
Host-Associated	Host-Associated	14.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.59%
Aquatic	Environmental → Aquatic	14.71%
Plants	Host-Associated → Plants	14.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.65%
Sediment	Environmental → Aquatic → Sediment	11.76%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.92%
Marine	Environmental → Aquatic → Marine	2.94%
Peat	Environmental → Terrestrial → Peat	2.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	11.76%
Loam	Environmental → Terrestrial → Soil → Loam	11.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.90%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.41%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.63%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	11.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.90%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.92%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.84%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.88%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	4.90%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.92%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.94%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000816	Forest soil microbial communities from Amazon forest - 2010 replicate II A10	Environmental	Open in IMG/M
3300004024	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005185	Soil and rhizosphere microbial communities from Laval, Canada - mgHPB	Environmental	Open in IMG/M
3300005218	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025985	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300026995	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB (SPAdes)	Environmental	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiFebDRAFT_112332772	3300000363	Soil	MVAIDGAARKSATDVDGPVQSEPMEGFFVRFMDALRETRRRQACREIEKNTHLLSDDFRWQLDLWRN*
INPhiseqgaiiFebDRAFT_1017512182	3300000364	Soil	MVAATDGVAREFAAYVDKPVLAAEARKGFFVRFMEALMETRRRHASREIAKRAHLLDDSWWQFDL*
AF_2010_repII_A01DRAFT_100006711	3300000580	Forest Soil	MVAATDGVARKFAAYVDEPVLAAEPRKGFFVRFMEALMETRRRQARREIAKRAHLLDDSWRQLDLKNN*
AF_2010_repII_A100DRAFT_10975762	3300000655	Forest Soil	MVAATDGVARKFAAYVDEPVLAAQPRKGFFVRFMEALMETRRRQARREIAKCAHLLDDSWRQLDL*
AF_2010_repII_A10DRAFT_10065041	3300000816	Forest Soil	MVAATDGVARKFAAYVDEPVLAAEPRKGFFVRFMGALRETRRRQARREIAKRAHLLDDSWRQLDL*
Ga0055436_101549011	3300004024	Natural And Restored Wetlands	MVDAIDGVARTSATDVDEPVQAEPSKGFFVCFMDALRESRRRQAQREIAKHAHLLSNDFWR*
Ga0062595_1000357851	3300004479	Soil	MTDWVIRKSATDVDKPMLAEPRKGFFVGFMNALRETRCRQALREISKHAHLLSNDSWQRLDLWHN*
Ga0066395_106030712	3300004633	Tropical Forest Soil	MVAATDGVARKFAAYVDEPVLAAEPRKGFFVRFMEALMETRRRQARREIAKCAHLLDDSWRQLDL*
Ga0062594_1015905232	3300005093	Soil	MTDGVIRKFATDVDEPVLAEPHKGFLVRFMEALRETRRRQADREIAKHAHLLSN
Ga0066814_100959392	3300005162	Soil	MTDGVIRKFATDVDEPVLVEPRKAFFVRFMDALRETRRRQADREIAKHAHLLSNDSWQQLDLWRSGV*
Ga0066809_100233832	3300005168	Soil	MTDGVIRKFATDVDEPVLAEPRKGFLVRFMEALRETRRGQADREIAKHAHLLSNDSWQQLDLWRSGV*
Ga0066809_100586392	3300005168	Soil	MTDGVIRKFATDVDEPVLVEPRKAFFVRFMEALRETRRRQADREIAKHAHLLSND
Ga0066810_100467002	3300005169	Soil	MTDGVIRKFATDVDEPVLVEPRKAFFVRFMDALRETRRRQADREIAK
Ga0066811_10017232	3300005185	Soil	MTDGVIRKFATDVDEPVLVEPRKAFFVRFMEALRETRRRQADREIAKHAHLLSNDSWQQLDLWRSGV*
Ga0068996_100239432	3300005218	Natural And Restored Wetlands	MVDAVDGVARTSATDVDEPVQAEPSKGFFVCFMDALRESRRRQAQREIAKHAHLLSNDFWR*
Ga0065707_102185142	3300005295	Switchgrass Rhizosphere	MTDWVIRKSATDVDKPMLAEPRKGFFVGFMNALRETRCRQALREISKHAHL
Ga0065707_103910332	3300005295	Switchgrass Rhizosphere	LRRRWKQEKENRMVAATDGLARKFAAYVDEPVLAAEPRKGFFVRFMEALMETRRGQARREIAKRAHLLDGSWRQLDL*
Ga0066388_1004967961	3300005332	Tropical Forest Soil	MTDWVIRKSTPDVEKPMLAEPRKGFFVGFMNALRETRRRQALREISKHAHLLPDDSWQRIDL*
Ga0066388_1008185992	3300005332	Tropical Forest Soil	MVAATDRVARKFAAYVEEPVLAAEPRKGFFVRFMEALMETRRCQARREIAKRAHLLDDSWRQLDL*
Ga0066388_1013107623	3300005332	Tropical Forest Soil	FAAYVDEPVLAAEPRKGFFVRFMEALMETRRRQARREIAKCAHLLDDSWRQLDL*
Ga0066388_1025730231	3300005332	Tropical Forest Soil	KFAAYVEEPVLAAEPRKGFFVRFMEALMETRRRQARREIAERAHLLNDSWRQLDL*
Ga0066388_1049318242	3300005332	Tropical Forest Soil	MVAATDGVARKFAAYVDEPVLAAEPRKGFFVRFMEALMETRRRQARREIAKHAHLLDDSWRQLDL*
Ga0066905_1000091287	3300005713	Tropical Forest Soil	MVAATDGVARKFAAYVEEPVLAAEPRKGFFVRFMEALMETRRRQARREIAKRAHLLDDSWRQLDL*
Ga0066905_1000994171	3300005713	Tropical Forest Soil	MVAATDGVARKSATDVDELVQAEPRKGFVRFMDALRETRRRQARREIAKNAHLLSDDFWRQLELWRNAS*
Ga0066905_1004539802	3300005713	Tropical Forest Soil	MVAVTDGVAGKFATDVDEPVQAEPRKGFFVRFMEALSETRRCQARREIAKNAHLLS*
Ga0066905_1008309151	3300005713	Tropical Forest Soil	NRMVAATDGVARKFAAYVDEPVLAAKPRKGFFIRFMEALMETRRRQARREIAKRAHLLDDSWRQLDLKNN*
Ga0066905_1009361621	3300005713	Tropical Forest Soil	MVAAIDGVVRKSATDVDEPVQAKPRKGFYVRFMDALRETRRHQACREIEKNTHLLSDDARWQLDFWRN*
Ga0066903_1004068931	3300005764	Tropical Forest Soil	MIAGEAIRKFATAVDQPVLAEPREGFFVRFMEALRETRRRQARREIAKHAHLLSNDSWQQLDL*
Ga0081455_100154215	3300005937	Tabebuia Heterophylla Rhizosphere	MVAVTDGVARKSATDVDELVQAEPRKGFVRFMDALRETRRRQARREIAKNAHLFSDDFWRQLDLWRNLS*
Ga0081455_100462146	3300005937	Tabebuia Heterophylla Rhizosphere	MVAALDGVACKSANDVEEVQAEPRKGFFVRFMDALRETRRHQACREIAKTAHLLSDDARWQLDLWRN*
Ga0081455_102261282	3300005937	Tabebuia Heterophylla Rhizosphere	MQFLGRWKQVLEKESRMVAAIDGVARKSAPDVDEPVQAEQRKGLFVHFMDGLRETRRRQACREIAKNAHLLSDDFRWQLDLWRN*
Ga0081455_103024272	3300005937	Tabebuia Heterophylla Rhizosphere	MVAVTDGVAGKFATDVDEPVQAEPRKGFFVRFMEALSETRRCQARREIAKSAHLLS*
Ga0081455_106322731	3300005937	Tabebuia Heterophylla Rhizosphere	MVAALDGVARKSANDVEEVQAEPRKGFFVRFMDAVRETRRHQACREIAKNAHLLSDDARWQLDLWRN*
Ga0075024_1000696542	3300006047	Watersheds	MLAATDGVARTSATDVDQRVQAEPREGFVRFMDALRETRRHQARREIAKNAHLLSDDFWWQLDLWRNLS*
Ga0075417_100332521	3300006049	Populus Rhizosphere	MVAAIDGIPRKSATVVDEPVQAEPRKGFLVRFMDTLRETRRRQARREIAKNAHLLSDDYWWQLDLWRN*
Ga0075026_1004387691	3300006057	Watersheds	MTDWVIRKFATDVDEPVLAEPRKGFFVRFMEALRGTRRRQAHREIAKHAHLLSIDSWPGPDYGF*
Ga0075420_1003438092	3300006853	Populus Rhizosphere	MVAAIDGIPRKSATVVDEPVQAEPRKGFLVRFMDTLRETRRRQARREIAKNAHLLS
Ga0126374_104883873	3300009792	Tropical Forest Soil	LRRRWKQEKEKRMVAATDGVARKFAAYVDEPVLTAGPRKGFFVRFMEALMETRRRQARREIAECAHLLDDSWQQLDL*
Ga0126374_109013031	3300009792	Tropical Forest Soil	MVAATDGVARKFAAYVEEPVLAAEPRKGFFVRFMEALMETRRRQARREIAKRAHLLDDSWRQLDLKNN*
Ga0126380_100145991	3300010043	Tropical Forest Soil	RKRKNRMVAATDGVARKFAAYVDEPVLAAKPRKGFFIRFMEALMETRRRQARREIAKRAHLLDDSWRQLDLKNN*
Ga0126380_103701293	3300010043	Tropical Forest Soil	VARKFAAYVEEPVLAAEPRKGFFVRFMEALMETRRCQARREIAKRAHLLDDSWRQLDL*
Ga0126382_107440461	3300010047	Tropical Forest Soil	LRRRWKQEKEKRMVAATDGVARKFAAYVDEPVLTAGPRKGFFVRFMEALVETRRRQARREITKRAHLLDDSWRQLDL*
Ga0126372_107244063	3300010360	Tropical Forest Soil	RKFAAYVDEPVLTAGPRKGFFVRFMEALVETRRRQARREIAKCAHLLDDSWRQLDL*
Ga0126383_104679123	3300010398	Tropical Forest Soil	VAATDGVARKFAAYVDEPVLAAQPRKGFFVRFMEALMETRRRQARREIAKCAHLLDDSWRQLDL*
Ga0126375_111906591	3300012948	Tropical Forest Soil	MVAATDGVARKFAAYVEEPVLAAEPRKGFFVRFMEALMETRRRQARREIAKRAYLLDDSWRQFDL*
Ga0164307_107380032	3300012987	Soil	ATDGVDRKFAAYVDEPVLAAEPRKGFFVRFMEALMETRRRQARREIAKRAHLLDDSWRQLDL*
Ga0132258_104138784	3300015371	Arabidopsis Rhizosphere	MVAATDGVARKFAAYVDKPVLAAEPRKGFFVRFMEALMETRRRQARREIAKRAHLLDDSWRQLGL*
Ga0132258_106399473	3300015371	Arabidopsis Rhizosphere	MVAATDGVDRKFAAYVDEPVLAAEPRKGFFVRFMEALMETRRRQARREIANRAHLLDDSWRQLDL*
Ga0132258_120237102	3300015371	Arabidopsis Rhizosphere	RKRRDRMTDGVIRKFATDVDEPVLAEPRKGFFVRFMKALSESRRRQADREISKHAHLLSKDSWQQLDLWRSGV*
Ga0132258_129545901	3300015371	Arabidopsis Rhizosphere	MTDGVIRKFATDVDEPVLAEPHKGFLVRFMEALRETRRRQADREIAKHAHLLSNDSWQQLDLWRSGV*
Ga0132256_1036786271	3300015372	Arabidopsis Rhizosphere	RKNRMVAATDGVDRKFAAYVDEPVLDAEPRKGFFVRFMEALMETRRRQARREIAKRAHLLDDSWRQLDL*
Ga0132255_1005509992	3300015374	Arabidopsis Rhizosphere	MVAATDGVDRKFAAYVDEPVLAAEPRKGFFVRFMEALMETRRRQARREIAKRAHLLDDSWRQLDL*
Ga0132255_1057905571	3300015374	Arabidopsis Rhizosphere	MTDGVIRKFATDVDEPVLAEPRKGFLVRFMEALRETRRGQADREIAKHAHLL
Ga0182036_100382254	3300016270	Soil	MVAATDGVARKFAAYVDEPVLAAEPRKGFFVRFMEALMETRRRQARREIELRAHLLDDSWRQFDL
Ga0182036_113970321	3300016270	Soil	KRKNRMVAATDGVARKFAAYVNEPVLAAEPRKGFFVRFMEALMETRRRQARREIAKHAHLLDDSWRQLDL
Ga0182041_100017734	3300016294	Soil	MVAATDGVARKFAAYVNEPVLAAEPRKGFVVRFMEALMETRRRQARREIAKHAHLLDDSWRQLDL
Ga0182041_100040753	3300016294	Soil	MVAATDGVARKFAVDVDEPVLAGEPRKGFLVRFMEALIETRRREARREIAKRAHLLDDSWRLDRISNEAGI
Ga0182034_100316754	3300016371	Soil	MVAATDGVARKFAAYVNGPVLAAEPRKGFFARFMEALMETRRRQARREIAKHAHLLDDSWRQLDL
Ga0182038_119993082	3300016445	Soil	AATDGVARKFAAYVNEPVLAAEPRKGFFVRFMEALMETRRRQARREIAKHAHLLDDSWRQLDL
Ga0184621_101209432	3300018054	Groundwater Sediment	MTDWVIRKFATDVDEPVLAKPRKGFFVRFMEALRETRRRQARREIAKHAHLLPNDSWQQLDL
Ga0184611_11056062	3300018067	Groundwater Sediment	MVTATDGVARKSATDVDELVQAEPRKGFVRFMDALRETRRRQARREIAKNAHLLSQDAWRQLDLWRN
Ga0184635_100147734	3300018072	Groundwater Sediment	MVTATDGVARKSATDVDELVQAEPRKGFVRFMDALRETRRRQARREIAKNAHLLSDDFWRQLDLWRNLS
Ga0184635_102803881	3300018072	Groundwater Sediment	MTDWVVRKFATDVDEPVLAERRKGFFVRFMEALRETRRRQALREIAKHAHLLPNDSWQQLDL
Ga0184624_102562841	3300018073	Groundwater Sediment	MTDWVVRKVATDVDEPVLAEPRKGFFVRFMEALGETRRRQAHREIAKHAHLLSNDSWPGPDYGF
Ga0184640_105126571	3300018074	Groundwater Sediment	MIAAEVIRKFATDVDEPVLAEPRKGFFVRFMEALRETRRRHARREIAKHAHLLPNDSWQQLDL
Ga0184625_104984761	3300018081	Groundwater Sediment	MTDWVIRKFATDVDEPVLAKPRKGFFVRFMEALRETRRRQAHREIAKHAHLLSNDSWPGPDYGF
Ga0193719_100826792	3300021344	Soil	MIAAEVVRKFATDVDEPVLAEPRKGFFVRFMEALRETRRRHARREIAKHAHLLPNDSWQQLDL
Ga0126371_107192032	3300021560	Tropical Forest Soil	MVAATDGVARKFAAYVDEPVLAAKPRKGFFTRFMEALMETRRRQARREIAKCAHLLDDSWRQLDL
Ga0222622_110633692	3300022756	Groundwater Sediment	DGVIRKFATDVDEPVLAEPRKGFFVRFMEALRETRRRQAHREIAKRAHLLSNDSWPGPDY
Ga0210117_10011726	3300025985	Natural And Restored Wetlands	MIDGVIRKFATDVDEPVLAEPRKGFFVRFMEALRETRRRQAHHEVAKHAHLLSNDFWR
Ga0208761_10133402	3300026995	Soil	MTDGVIRKFATDVDEPVLVEPRKAFFVRFMDALRETRRRQADREIAKHAHLLSNDSWQQLDLWRSGV
Ga0207981_10146903	3300027560	Soil	MTDGVIRKFATDVDEPVLVEPRKAFFVRFMEALRETRRRQADREIAKHAHLLSNDSWQQLDLWRSGV
Ga0207981_10226832	3300027560	Soil	MTDGVIRKFATDVDEPVLAEPRKGFLVRFMEALRETRRGQADREIAKHAHLLSNDFWQQLDLWRSGV
Ga0209811_100501752	3300027821	Surface Soil	MTDGVIRKFATDVDEPVLAESRKGFFVRFMKALSESRRCQADREISKHAHLLSNDSWQQLDLWRSGV
Ga0209814_100190173	3300027873	Populus Rhizosphere	MVAAIDGIPRKSATVVDEPVQAEPRKGFLVRFMDTLRETRRRQARREIAKNAHLLSDDYWWQLDLWRN
Ga0209583_102487842	3300027910	Watersheds	MTDWVIRKFAADVDEPVLAEPRKGFFVRFMEALRETRCRQARREIAKHAHLLSNDSWR
Ga0209069_107994631	3300027915	Watersheds	MTDGVIRKFATDVDEPVLAEPRKGFFVRFMEALRETRCRQARREIAKHAHLLS
Ga0307307_101784631	3300028718	Soil	MTDGVIRKFATDVDEPVLAEPRKGFFVRFMEALRETRRRQAHREIAKRAHLLSNDSWPGPDYGF
Ga0307317_103272491	3300028720	Soil	MTDGVIRKFATDVDEPVLAKPRKGFFVRFMEALRETRRRQARREIAKHAHLLPNDSWQQLDL
Ga0307282_102432591	3300028784	Soil	MTDGVIRKFATDVDEPVLAEPRKGFFVRFMEALRETRRRQARREIAKHAHLLSSDNWQQLDL
Ga0307284_103469121	3300028799	Soil	MTDWVVRKVATDVDEPVLAEPRKGFFVRFMEALRETRRRQARREIAKHAHLLSSDNWQQLDL
Ga0307305_101065212	3300028807	Soil	MTDWVIRKFATDVDEPVLAKPRKGFFVRFMEALRETRRRQARREIAKHAHLLPNRFLAAT
Ga0307310_103063972	3300028824	Soil	QTRSSKRRDRMTDWVIRKFATDVDEPVLAKPRKGFFVRFMEALRETRRRQARREIAKHAHLLPNRFLAAT
Ga0307308_104354912	3300028884	Soil	MTDWVVRKVATDVDEPVLAEPRKGFFVRFMEALRETRRRQAHREIAKRAHLLSNDSWPGPDYGF
Ga0307498_100349392	3300031170	Soil	MVAATDGVDRKFAAYVDEPVLAAEPRKGFFVRFMEALMETRRRQARREIAKRAHLLDDSWRQLDL
Ga0170818_1141992342	3300031474	Forest Soil	MIAAEVIRKFATDVDEPVLAEPRKGFFVRFMEALRETRRRHARREIAKHAHLLPNDSWQQLDLWRN
Ga0318534_103693532	3300031544	Soil	MVAATDGVARKFAVYVDEPVLAGEPRKGFLVRFMEALIETRRREARREIAKRAHLLDDSWRLDRISNEAGI
Ga0318541_100020006	3300031545	Soil	MVAATDGVARKFAAYVNEPVLAAEPRKGFFVRFMEALMETRRRQARREIAKHAHLLDDSWRQLDL
Ga0310887_100710642	3300031547	Soil	VTDWVIRKSATDVEKPMLAEPRKGFFVSFMNALRETRRRQALREISKHAHLLPDDSWRRLDLWHN
Ga0310887_102283511	3300031547	Soil	MTDGVIRKFATDVDEPVLAEPRKGFLVRFMEALRETRRGQADREIAKHAHLLSNDSWQQLDLWRSGV
Ga0318572_108284782	3300031681	Soil	ARKFAAYVNEPVLAAEPRKGFFVRFMEALMETRRRQARREIAKHAHLLDDSWRQLDL
Ga0318492_103050251	3300031748	Soil	AVYVDEPVLAGEPRKGFLVRFMEALIETRRREARREIAKRAHLLDDSWRLDRISNEAGI
Ga0310917_100265683	3300031833	Soil	MVAATDGVARKFAAYVNEPVLAAEPRKGFFVRFMEALMETRRRQARREIAKHAHLLDDSWRQLICKIA
Ga0306923_100228529	3300031910	Soil	MVATTDGVARKFATYVEEPVLAERRKGFFVRFMEALRETRRRQARREIAKRAHLLDDSWRQLDL
Ga0318530_102230611	3300031959	Soil	VARKFAVYVDEPVLAGEPRKGFLVRFMEALIETRRREARREIAKRAHLLDDSWRLDRISNEAGI
Ga0318531_102529562	3300031981	Soil	GMVAATDGVARKFAVYVDEPVLAGEPRKGFLVRFMEALIETRRREARREIAKRAHLLDDSWRLDRISNEAGI
Ga0310906_113352671	3300032013	Soil	MTDWVIRKFASDVDEPVLAEPRKGFFVRFMEALRETRRRQALREIAKHAHLISNVSWQQNGMSALT
Ga0310899_102403332	3300032017	Soil	MTDGVIRKFATDVDEPVLAEPRKSFLVRFMEALRETRRGQADREIAKHAHLLSNDSWQQLDLWRSGV
Ga0318505_105750572	3300032060	Soil	VKTKNGMVAATDGVARKFAVYVDEPVLAGEPRKGFLVRFMEALIETRRREARREIANRAHLLDDSWRLDRISNEAGI
Ga0326726_100096666	3300033433	Peat Soil	MIAAEVIRKFATDVDEPVLAEPRKGFFVRFMEALRETRRRQARREIAKHAHLFDLWRN
Ga0326726_100229563	3300033433	Peat Soil	MVAATDGVARKSATDVNQLVQAEPREGFVRFMDALRETRRRQARREIAKNAHLLSDDFWRQLDLWRNLS
Ga0326726_115700322	3300033433	Peat Soil	MTDGVIRKFATDVDEPVVAEPRKGFFVRFMEALRKTRRRQAHREIAKHAHLLSNDSWPGPDYGF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F100569

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences