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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F100600 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 102 |
| Average Sequence Length | 51 residues |
| Representative Sequence | RLIERRGRDAKLIDWLDELTADCAKKQAHNMNDPCGARCPQLPKVL |
| Number of Associated Samples | 82 |
| Number of Associated Scaffolds | 102 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 6.25 % |
| % of genes near scaffold ends (potentially truncated) | 11.76 % |
| % of genes from short scaffolds (< 2000 bps) | 10.78 % |
| Associated GOLD sequencing projects | 78 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.32 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (96.078 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (18.628 % of family members) |
| Environment Ontology (ENVO) | Unclassified (24.510 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (40.196 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 39.19% β-sheet: 0.00% Coil/Unstructured: 60.81% | Feature Viewer |
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| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.32 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 102 Family Scaffolds |
|---|---|---|
| PF13467 | RHH_4 | 3.92 |
| PF00589 | Phage_integrase | 0.98 |
| PF01183 | Glyco_hydro_25 | 0.98 |
| PF00313 | CSD | 0.98 |
| PF04226 | Transgly_assoc | 0.98 |
| PF04392 | ABC_sub_bind | 0.98 |
| PF06841 | Phage_T4_gp19 | 0.98 |
| PF02371 | Transposase_20 | 0.98 |
| PF01068 | DNA_ligase_A_M | 0.98 |
| PF01757 | Acyl_transf_3 | 0.98 |
| PF05065 | Phage_capsid | 0.98 |
| PF13578 | Methyltransf_24 | 0.98 |
| PF14020 | DUF4236 | 0.98 |
| PF00753 | Lactamase_B | 0.98 |
| COG ID | Name | Functional Category | % Frequency in 102 Family Scaffolds |
|---|---|---|---|
| COG1423 | ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family | Replication, recombination and repair [L] | 0.98 |
| COG1793 | ATP-dependent DNA ligase | Replication, recombination and repair [L] | 0.98 |
| COG2261 | Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family | General function prediction only [R] | 0.98 |
| COG2984 | ABC-type uncharacterized transport system, periplasmic component | General function prediction only [R] | 0.98 |
| COG3547 | Transposase | Mobilome: prophages, transposons [X] | 0.98 |
| COG3757 | Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family | Cell wall/membrane/envelope biogenesis [M] | 0.98 |
| COG4653 | Predicted phage phi-C31 gp36 major capsid-like protein | Mobilome: prophages, transposons [X] | 0.98 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 96.08 % |
| All Organisms | root | All Organisms | 3.92 % |
| Visualization |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 18.63% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 13.73% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 7.84% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 6.86% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 4.90% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 4.90% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 3.92% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere | 2.94% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 2.94% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 2.94% |
| Peat Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil | 2.94% |
| Natural And Restored Wetlands | Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands | 1.96% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 1.96% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 1.96% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 1.96% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 1.96% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 1.96% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.96% |
| Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment | 0.98% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 0.98% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 0.98% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 0.98% |
| Grass Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil | 0.98% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 0.98% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 0.98% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 0.98% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 0.98% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.98% |
| Arabidopsis Thaliana Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere | 0.98% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.98% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.98% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere | 0.98% |
| Visualization |
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| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2170459013 | Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm | Environmental | Open in IMG/M |
| 3300000364 | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil | Environmental | Open in IMG/M |
| 3300000793 | Forest soil microbial communities from Amazon forest - 2010 replicate II A001 | Environmental | Open in IMG/M |
| 3300000890 | Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil | Environmental | Open in IMG/M |
| 3300004070 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2 | Environmental | Open in IMG/M |
| 3300004463 | Combined assembly of Arabidopsis thaliana microbial communities | Host-Associated | Open in IMG/M |
| 3300004479 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs | Environmental | Open in IMG/M |
| 3300005168 | Soil and rhizosphere microbial communities from Laval, Canada - mgLPC | Environmental | Open in IMG/M |
| 3300005294 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil | Environmental | Open in IMG/M |
| 3300005295 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 | Environmental | Open in IMG/M |
| 3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300005353 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG | Host-Associated | Open in IMG/M |
| 3300005526 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 | Environmental | Open in IMG/M |
| 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Host-Associated | Open in IMG/M |
| 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Host-Associated | Open in IMG/M |
| 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Host-Associated | Open in IMG/M |
| 3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
| 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Host-Associated | Open in IMG/M |
| 3300006049 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 | Host-Associated | Open in IMG/M |
| 3300006845 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 | Host-Associated | Open in IMG/M |
| 3300006852 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 | Host-Associated | Open in IMG/M |
| 3300006853 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4 | Host-Associated | Open in IMG/M |
| 3300006854 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4 | Host-Associated | Open in IMG/M |
| 3300006871 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 | Host-Associated | Open in IMG/M |
| 3300006880 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 | Host-Associated | Open in IMG/M |
| 3300006904 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3 | Host-Associated | Open in IMG/M |
| 3300006969 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 | Host-Associated | Open in IMG/M |
| 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Host-Associated | Open in IMG/M |
| 3300010047 | Tropical forest soil microbial communities from Panama - MetaG Plot_30 | Environmental | Open in IMG/M |
| 3300010361 | Tropical forest soil microbial communities from Panama - MetaG Plot_23 | Environmental | Open in IMG/M |
| 3300010362 | Tropical forest soil microbial communities from Panama - MetaG Plot_22 | Environmental | Open in IMG/M |
| 3300010398 | Tropical forest soil microbial communities from Panama - MetaG Plot_35 | Environmental | Open in IMG/M |
| 3300010401 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1 | Environmental | Open in IMG/M |
| 3300010868 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction) | Environmental | Open in IMG/M |
| 3300012285 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG | Environmental | Open in IMG/M |
| 3300012948 | Tropical forest soil microbial communities from Panama - MetaG Plot_14 | Environmental | Open in IMG/M |
| 3300012957 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG | Environmental | Open in IMG/M |
| 3300012961 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG | Environmental | Open in IMG/M |
| 3300012971 | Tropical forest soil microbial communities from Panama - MetaG Plot_1 | Environmental | Open in IMG/M |
| 3300012985 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG | Environmental | Open in IMG/M |
| 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Host-Associated | Open in IMG/M |
| 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Host-Associated | Open in IMG/M |
| 3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Host-Associated | Open in IMG/M |
| 3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
| 3300015372 | Soil combined assembly | Host-Associated | Open in IMG/M |
| 3300016371 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 | Environmental | Open in IMG/M |
| 3300017947 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG | Environmental | Open in IMG/M |
| 3300018000 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex | Environmental | Open in IMG/M |
| 3300018081 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1 | Environmental | Open in IMG/M |
| 3300022694 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex | Environmental | Open in IMG/M |
| 3300022756 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1 | Environmental | Open in IMG/M |
| 3300025953 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2 (SPAdes) | Environmental | Open in IMG/M |
| 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026452 | Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PU4 | Environmental | Open in IMG/M |
| 3300026802 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-C (SPAdes) | Environmental | Open in IMG/M |
| 3300027523 | Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes) | Environmental | Open in IMG/M |
| 3300027873 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028718 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194 | Environmental | Open in IMG/M |
| 3300028787 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381 | Environmental | Open in IMG/M |
| 3300028791 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144 | Environmental | Open in IMG/M |
| 3300028807 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186 | Environmental | Open in IMG/M |
| 3300028819 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153 | Environmental | Open in IMG/M |
| 3300028878 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117 | Environmental | Open in IMG/M |
| 3300028881 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116 | Environmental | Open in IMG/M |
| 3300028885 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185 | Environmental | Open in IMG/M |
| 3300030916 | Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031170 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S | Environmental | Open in IMG/M |
| 3300031198 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S | Environmental | Open in IMG/M |
| 3300031199 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S | Environmental | Open in IMG/M |
| 3300031226 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S | Environmental | Open in IMG/M |
| 3300031231 | Coassembly Site 11 (all samples) - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031469 | Fir Spring Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031562 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3 | Environmental | Open in IMG/M |
| 3300031858 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2 | Environmental | Open in IMG/M |
| 3300031892 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2 | Environmental | Open in IMG/M |
| 3300031940 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2 | Environmental | Open in IMG/M |
| 3300032000 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3 | Environmental | Open in IMG/M |
| 3300032013 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3 | Environmental | Open in IMG/M |
| 3300032828 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4 | Environmental | Open in IMG/M |
| 3300033433 | Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN | Environmental | Open in IMG/M |
| 3300034090 | Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| N57_04372060 | 2170459013 | Grass Soil | VAGSKKRGRDAKVIDWLGELTAECPKKIAHNMNDPCGAKCPQLPKVM |
| INPhiseqgaiiFebDRAFT_1013544062 | 3300000364 | Soil | SKLPDLIDWLDEITVNCAKKRAGNMNDPCRARCPQLPMVL* |
| AF_2010_repII_A001DRAFT_100013831 | 3300000793 | Forest Soil | RLINQRGRDAKVIDWLDELTADCPKKTARNMNDPCGAKCPQVPKVL* |
| JGI11643J12802_116116701 | 3300000890 | Soil | KCSSAGRYRVPHVIEERRRDAKLIDWLDEITADCPKKMAHNMNDPCGARCPDLPRVL* |
| Ga0055488_100992891 | 3300004070 | Natural And Restored Wetlands | RSGRYQLQRLIEDRGRDAKVIDWLDELTADCPKKQARNMNDPCGAKCPELAKVL* |
| Ga0063356_1061714911 | 3300004463 | Arabidopsis Thaliana Rhizosphere | MSCAKCGRDGCYGLSRLIEKRGRDAKLIDWLDELTAECPNKIAHNMNDPCGARCQDLAKVL* |
| Ga0062595_1017837621 | 3300004479 | Soil | RLIERRGRDAKLIDWLDELTADCAKKQAHNMNDPCGARCPQLPKVL* |
| Ga0062595_1026777001 | 3300004479 | Soil | LNRLISQRGRDAKVIDWLDELTAECPKKIAHNMNDPCGAKCPQLPKVL* |
| Ga0066809_100564232 | 3300005168 | Soil | LIRKRGRDGKVIDWLDELTADCSKKQARNMNDPWGVRCPDLARVL* |
| Ga0065705_100242192 | 3300005294 | Switchgrass Rhizosphere | VQHLIEERGRSAKLIGWLDEITADCPKKQAHNMNDPCGARFPDLPKVL* |
| Ga0065707_109615171 | 3300005295 | Switchgrass Rhizosphere | LIKERGGDAKLIDWLDEITADCPKKQAHDMNDPCGARFPDLPKVL* |
| Ga0065707_109970882 | 3300005295 | Switchgrass Rhizosphere | RGGNAKLIDWLDEITADCPKKMAHNTNDSCGARRPDLPRVL* |
| Ga0066388_1018700881 | 3300005332 | Tropical Forest Soil | VKRLIDDRGLDGKLIDWLDEITADCPKKLAHNMNEPCGARCPDLPRVL* |
| Ga0070669_1016023223 | 3300005353 | Switchgrass Rhizosphere | VQHLIKERGGNAKLIDWLDEITAHCPKKQAHNMNDPCCARCPDLPKVL* |
| Ga0073909_102581762 | 3300005526 | Surface Soil | MFRAPRQGYGRYRLDRLIKERGRNAKLIDWLGEITADCPKKIAHNMNDPCGARYRDLARVL* |
| Ga0070665_1023220092 | 3300005548 | Switchgrass Rhizosphere | MNKRGRDAKLIDWLDETTADCPKKLAGNYSDQCAAPCPDLPRVL* |
| Ga0068857_1007540721 | 3300005577 | Corn Rhizosphere | VRTRWLYGLNRLVERRGRDAKLIDWLDEITADCAKKRAGNMNDPCGARCPQLPKV |
| Ga0068852_1026438761 | 3300005616 | Corn Rhizosphere | CYGLNRLIERRGRDAKLIDWLDEITADCAKKSAGNMNDPCGARCPQLPKVL* |
| Ga0066903_1000329228 | 3300005764 | Tropical Forest Soil | LQQVRADGCYGLKRLIERRGRDGKLIDWLDEITADCTKKRARNMNDPYGAKCPQLPKVL* |
| Ga0066903_1024924623 | 3300005764 | Tropical Forest Soil | SCEKCGRDGCYGLAMLIDKRGRDSKIVDWLDEITADCPKKSAHNMRDQCAARCPDLPKVL |
| Ga0066903_1034184993 | 3300005764 | Tropical Forest Soil | VLRVTCGQCGRDGCYGLSRRISKRGRDAKIIDWLDELTSECPKRIAHNMNDPCGVKCPQLPKVL* |
| Ga0068860_1018837432 | 3300005843 | Switchgrass Rhizosphere | MLRVACGKCGRDGCYGLNRLIERRGRDAKLIDWLDEITADCAKKSAGNMNDPCGARCPQLPKVL* |
| Ga0075417_100658951 | 3300006049 | Populus Rhizosphere | LSPCRHRYRVERLIDERRCNAKVIDWLDEITADCPKKLAHNMNDPCGARCPDLPRVL* |
| Ga0075417_106193042 | 3300006049 | Populus Rhizosphere | GRLRQVRARRLLWIELNRLIERRGRDAKLIDWLDEITADCAKKRAGNMNDPCGARCPQLPKVL* |
| Ga0075421_1007922482 | 3300006845 | Populus Rhizosphere | MQRRSIEFHGCAGRYRLDRLIEERGRNAKLIDWLDELTAECPKKIAHNMNDPCSARCPQLPKVL* |
| Ga0075433_101580981 | 3300006852 | Populus Rhizosphere | LIDDGGRNGKVIDWLYEIAADCPKKQAHNMNDPCGARFPDLPRVL* |
| Ga0075420_1010745263 | 3300006853 | Populus Rhizosphere | RARRLLWIELNRLIERRGRDAKLIDWLDEITADCAKKRAGNMNDPCGARCPQLPKVL* |
| Ga0075425_1007986531 | 3300006854 | Populus Rhizosphere | MPRDAKLIDWLDEITADCAKKRAGNMNDPCGARCPQLPKVL* |
| Ga0075434_1008458233 | 3300006871 | Populus Rhizosphere | IDDGGRNGKVIDWLYEIAADCPKKQAHNMNDPCGARFPDLPRVL* |
| Ga0075429_1014410601 | 3300006880 | Populus Rhizosphere | RYRVRQLIEERGGSGKLIDWLDEITAVYPEKQAHNMNDPCGARFLALPRVL* |
| Ga0075424_1002819543 | 3300006904 | Populus Rhizosphere | VQRLIDDGGRNGKVIDWLYEIAADCPKKQAHNMNDPCGARFPDLPRVL* |
| Ga0075424_1017062382 | 3300006904 | Populus Rhizosphere | LNRLVERRGRDAKLIDWLDEITADCAKKRAGNMNDPCGARCPQLPKVL |
| Ga0075419_101695682 | 3300006969 | Populus Rhizosphere | VQRLIDDGGRNGKVINWLYEIAADCPKKQAHNMNDPCGARFPDLPRVL* |
| Ga0075419_103892362 | 3300006969 | Populus Rhizosphere | VQHLIEERGRNAKLIDWLDEITADCPKKQAQNMNDPCGARCPQLTKVL* |
| Ga0105249_127317001 | 3300009553 | Switchgrass Rhizosphere | VQHLIKERGGNAKLIDWLDEITADCPKKQAHDMNDPCGARFPDLPKVL* |
| Ga0126382_101165762 | 3300010047 | Tropical Forest Soil | VSCSKCGRDGCYGLARLIDKRGRDAKVIDWLDELTAECPKRQARNMNDPCGAKCPQLAKVL* |
| Ga0126382_116550331 | 3300010047 | Tropical Forest Soil | VQRANRYSVKRLIDERGLDGKLVDWLDEITADCPKNLTHNMNDPCSARCPDLPRVL* |
| Ga0126378_102696723 | 3300010361 | Tropical Forest Soil | CGRSGRYRLRRLIDERGRDAKVIDWMDEITADCPKKMTNSMNDQCGARCPDLPSVL* |
| Ga0126377_101255721 | 3300010362 | Tropical Forest Soil | QHLIEERGRNAKLIDWLDEITADCPKKLAHNMNDPCGARFPDLPKVL* |
| Ga0126383_106405633 | 3300010398 | Tropical Forest Soil | VQHLIEERGGNAKLIDWLDEITTDCPKKLAHNMNDPCGARFPELPRVL* |
| Ga0134121_106589763 | 3300010401 | Terrestrial Soil | CEKCGRDGCYGLAKLIDKRGRDAKLIDWVDELTGDCPKKLTRNMNDPCGAKCPELPKVL* |
| Ga0124844_12229232 | 3300010868 | Tropical Forest Soil | RNAKLIDWLDEITADCPKKLAHNMNDPCGARFPDLPKVL* |
| Ga0137370_107505822 | 3300012285 | Vadose Zone Soil | RLHRLIEDRGRDAKLIDWLDELTATCPKKIARDMNDPCGARCPDLPRVL* |
| Ga0126375_103087862 | 3300012948 | Tropical Forest Soil | RGKCGRSGRYRLQRLIDERGRNAKVIDWMDEITADCPKKMTNSMNDQCAARCPDLPRVL* |
| Ga0126375_115852441 | 3300012948 | Tropical Forest Soil | GRYQVQHLIEERGRNAKLIDWLDELTAHNMNDPCGAGFPDLPRVL* |
| Ga0164303_101549751 | 3300012957 | Soil | LLRVACDKCGRDGCYRLNRLIERRGRDAKLIDWLDEITADCAKKHAANMNDPCGARGPQLPTVL* |
| Ga0164303_102033792 | 3300012957 | Soil | RGRDAKLIDWLDEITADCAKKRAGNMNDPCGARCPQLPKVL* |
| Ga0164303_113288771 | 3300012957 | Soil | MTRRQAAKRGRDAKLIDWLDELTKKIALNMNDPCGARCLNLPRVL* |
| Ga0164302_111751691 | 3300012961 | Soil | VQHLIEERGRSAKLIGWLDEITADCPKKQAHNMNDPCGARFPDLPK |
| Ga0126369_111318893 | 3300012971 | Tropical Forest Soil | VPHLIQERGGNAKLIDWLNEITADCAKKPAGNMNDPCRAKCPQLPKVL* |
| Ga0164308_114947702 | 3300012985 | Soil | KCGRDGCYELNRLISQRGRDAKVIDWLDELTAECPKKIAHNMNDPCGAKCPQLPKVL* |
| Ga0157374_127762651 | 3300013296 | Miscanthus Rhizosphere | GTYRLTGLIERRSRDGKVIDWLDELTADCPRKQARNTNDPCGAKCPDLPRVL* |
| Ga0157379_104897311 | 3300014968 | Switchgrass Rhizosphere | RGRDAKLIDWLDETTADCPKKLAGNYSDQCAAPCPDLPRVL* |
| Ga0157376_111349662 | 3300014969 | Miscanthus Rhizosphere | IDKRGRDAKLIDWVDELTGDCPKKLTRNMNDPCGAKCPELPKVL* |
| Ga0132258_105509407 | 3300015371 | Arabidopsis Rhizosphere | VACAKCDRAGTYRLTGLIERRGRDGKVIDWLDELSADCPRKRARNTNDPCGAKCPDLPKVL* |
| Ga0132256_1035188622 | 3300015372 | Arabidopsis Rhizosphere | MNKRGRDAKLIDWLDETTADCPKKSAGNYSDQCAAPCPDLPRVL* |
| Ga0182034_109596281 | 3300016371 | Soil | MLRVSCDKCGRDGCYGLAKLIAKRGPDGKLIDWLDEITADCAKKLAQNMNDPCGARCRDLPRVL |
| Ga0182034_110138142 | 3300016371 | Soil | GHDARVIDWLDEITVDCPKKRTHNWNDQCVARCPDLPKVL |
| Ga0187785_105440853 | 3300017947 | Tropical Peatland | ARQRGRDVKIIDCLDEISADCPKKIERNMSDPCGAKCPDLAAVL |
| Ga0184604_103083632 | 3300018000 | Groundwater Sediment | RLHRLIEDRGRDAKLIDWLNELTATCPKKIARDMNDPCGARCPDLPRVL |
| Ga0184625_100995782 | 3300018081 | Groundwater Sediment | MTRRQAAKVGRDAKLIDWLDELTVECSKKIAHNMNDPCGAKCPQLPKVL |
| Ga0184625_101849672 | 3300018081 | Groundwater Sediment | MLNAPRRRNHILLRVACDKCGRDSCYGLHRLIEKRGREAKLIDWLDELTAECPRKTAHNMNDPCGARCRDLARVL |
| Ga0184625_102691922 | 3300018081 | Groundwater Sediment | ACDKCGRDGCYGLHRLIERRGREAKLIDWLDELTAECPRKIAHNMNDPCGARCRDLARVL |
| Ga0222623_102873551 | 3300022694 | Groundwater Sediment | RGRDAKLIDWLDELIAECPKVAHNMNDTFGAKYPQLPKVL |
| Ga0222622_107379701 | 3300022756 | Groundwater Sediment | MLRVACDKCGRDGCYRLRRLIEKRGRDTKLVDWLDELTAECPKKTAHNMNDRRGARCQDLVKVL |
| Ga0210068_10400681 | 3300025953 | Natural And Restored Wetlands | RSGRYQLQRLIEDRGRDAKVIDWLDELTADCPKKQARNMNDPCGAKCPELAKVL |
| Ga0207668_111114393 | 3300025972 | Switchgrass Rhizosphere | RLISQRGRDANVIDWLDELTAECPKKIAHNMNDPCGAKCPQLPKVL |
| Ga0256821_10055843 | 3300026452 | Sediment | MQRLMEERGRDAKVIDWLDELTVECPKKKTHNWNDQCAARCPDLARVL |
| Ga0207511_1060291 | 3300026802 | Soil | LIDKRGRDAKLIDWVDELTGDCPKKLTRNMNDPCGAKCPELPKVL |
| Ga0208890_10150873 | 3300027523 | Soil | RLDRLIKERGRNAKLIDWLGEITADCPKKIAHNMNDPCGARYRDLARVL |
| Ga0209814_100032801 | 3300027873 | Populus Rhizosphere | GRLRQVRARRLLWIELNRLIERRGRDAKLIDWLDEITADCAKKRAGNMNDPCGARCPQLPKVL |
| Ga0209814_103728852 | 3300027873 | Populus Rhizosphere | YRVQHLIEERGRNAKLIDWLDEITADCPRKQAHNMNDPCGARFPDLQRVL |
| Ga0268266_101891444 | 3300028379 | Switchgrass Rhizosphere | MNKRGRDAKLIDWLDETTADCPKKLAGNYSDQCAAPCPDLPRVL |
| Ga0268266_117671681 | 3300028379 | Switchgrass Rhizosphere | RVACGKCGRDGCYGLNRLIERRGRDAKLIDWLDEITADCAKKSAGNMNDPCGARCPQLPKVL |
| Ga0307307_102901272 | 3300028718 | Soil | LFWRAYGRDAKVIDWLDELTAECPKDIAQNMNDPCGARCPDLPAIL |
| Ga0307323_101601841 | 3300028787 | Soil | MARPDPVGRDAKLIDWLDELTAECPKKIARNMNDPCGARCRDLARVL |
| Ga0307290_103786272 | 3300028791 | Soil | ILARLIEKRGRDAKLIDWLDELTAECPKKIAHNMNDPCGAKRPQLPKVL |
| Ga0307305_101662592 | 3300028807 | Soil | SPATSAGAMVYGLGRLIEKRGRDAKLIDWLDELTAECPKKIARNMNDPCGAKCPQLPKVL |
| Ga0307296_101786821 | 3300028819 | Soil | ERRGRDAKLIDWLDEITADCTKKRAGTCDARCPQLPKVL |
| Ga0307296_102267833 | 3300028819 | Soil | LIKDRGRDAKLIDWLDELTAECPKKIAHNMNDPCGARCPQLPRVL |
| Ga0307278_104609872 | 3300028878 | Soil | YGLHRLIERRGRDAKLIDWLDELTAGCPKKIAHNMNDPCGARCRDLARVL |
| Ga0307277_104548952 | 3300028881 | Soil | DAKLIDWLDEITADCAKKRAGNMNDPCGAKCPQLPKVL |
| Ga0307304_104911212 | 3300028885 | Soil | YRLRRLIEKRGRDTKLVDWLDELTAECPKKTAHNMNDRRGARCQDLVKVL |
| Ga0075386_121318732 | 3300030916 | Soil | IRVYGRDATLRDWLDVITADCPKKIARNDYSRCGAKCPQLPKVW |
| Ga0307498_101607871 | 3300031170 | Soil | MLRVACDKCGRDGCYGLRRLIEKRGRDAKLVDWLDELTAECPKKTAHNMNDRCGARCQDLAKVL |
| Ga0307500_100951711 | 3300031198 | Soil | KLDVLRVSCDKCGRDGCYGLGRLIEKRGRNAKLIDWLDELTAECPKKIAHNMNDPCGAKRPQYRRCCS |
| Ga0307495_101215271 | 3300031199 | Soil | ASSRSVGRDGKIIDWLDELTAECPKKIVHNMNDPCGAKCPDLPRVL |
| Ga0307497_102632751 | 3300031226 | Soil | VAGKCILARLIEKRGRDAKLIDWLDELTAECPKKIAHIMNDPCGANCPQLPKVL |
| Ga0307497_106456831 | 3300031226 | Soil | DGRYILARLIRNRGRDAKLIEWLDELTAECPKKIALNMNDPCSARCRDLARML |
| Ga0170824_1258229263 | 3300031231 | Forest Soil | LGFLRVRCEKCGRDRRYRLDRLIRVYGRDAKLIDWLDVITSDCPKKIADNMNDTCGATCPQLPKVL |
| Ga0170819_111959661 | 3300031469 | Forest Soil | EKCGRDGCYGLNRLIKKRGREAKLIDWLDELTAECPKKIAHNMNDPCGAAKCSQLPKVV |
| Ga0310886_108017802 | 3300031562 | Soil | YELNRLISQRGRDAKVIDWLDELTAECPKKIAHNMNDPCGAKCPQLPKLL |
| Ga0310892_110812301 | 3300031858 | Soil | RDAKLIDWLDEITADCAKKRAANMNDLCGARCPQLPTVL |
| Ga0310893_105164941 | 3300031892 | Soil | FGLNRLIEPRGRDAKLIDWLDEITADCAKKRAANMNDPCGARCPQLPTVL |
| Ga0310901_103580662 | 3300031940 | Soil | RSGRYQVQRLIKDRGRDAKLIDWIDELTADCRKKKAGSMNDQCAARCPDLPRVL |
| Ga0310903_100052391 | 3300032000 | Soil | KERGRNAKLIDWLGEITADCPKKIAHNMNDSCGARYRDLARVL |
| Ga0310906_100344264 | 3300032013 | Soil | MFRAPRQGYGRYRLDRLIKERGRNAKLIDWLGEITADCPKKIAHNMNDPCGARYRDLARV |
| Ga0310906_105322241 | 3300032013 | Soil | EKCGRDGCYGPSRLIDKRGRDGKVIDWLDELTADCSKEQARNMNDPCGARCRDLSRVL |
| Ga0335080_102128243 | 3300032828 | Soil | MLRVSCGKCERDGCYGLARLINQRGRDAKLIDRLDELTAECPKKIARNMNDPCGARCQDLAKVL |
| Ga0326726_113889932 | 3300033433 | Peat Soil | RLLRLSRLIDKRGRDAKVIDWLDELTADCPKNIAHNMNDPCGARCPQLPKVL |
| Ga0326723_0242800_248_403 | 3300034090 | Peat Soil | MKLEGRHRIARGRDAKVIDWLDKLTAECPKNIAHNMNDPCGARCPQLPKVL |
| Ga0326723_0482332_3_161 | 3300034090 | Peat Soil | GCYGLNRLINQRGRDAKLIDWLDELTAECPKKIARNMNDPCGAKCPQLPGVL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |