Metagenome / Metatranscriptome Family F100630

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100630
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	92 residues
Representative Sequence	MQHPHEVDIVLAVLDTQEIMVYGRDLLRPLVADGEEGQTAVARIPIGRPESADVLKAYFAACGSVTWAKVLEAGRQIPRLERAMAADPRLNQA
Number of Associated Samples	66
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	73.27 %
% of genes near scaffold ends (potentially truncated)	24.51 %
% of genes from short scaffolds (< 2000 bps)	88.24 %
Associated GOLD sequencing projects	61
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (77.451 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (28.431 % of family members)
Environment Ontology (ENVO)	Unclassified (34.314 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.039 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.58% β-sheet: 21.49% Coil/Unstructured: 47.93%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF03743	TrbI	3.92
PF13271	DUF4062	2.94
PF09458	H_lectin	1.96
PF04392	ABC_sub_bind	1.96
PF13473	Cupredoxin_1	1.96
PF14319	Zn_Tnp_IS91	0.98
PF00239	Resolvase	0.98
PF03389	MobA_MobL	0.98
PF01381	HTH_3	0.98
PF13565	HTH_32	0.98
PF12680	SnoaL_2	0.98
PF03476	MOSC_N	0.98
PF02515	CoA_transf_3	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2948	Type IV secretory pathway, VirB10 component	Intracellular trafficking, secretion, and vesicular transport [U]	3.92
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.96
COG0507	ATPase/5Ã¢â‚¬â„¢-3Ã¢â‚¬â„¢ helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	Replication, recombination and repair [L]	0.98
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.98
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.98
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.98
COG3217	N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain	Defense mechanisms [V]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.45 %
All Organisms	root	All Organisms	22.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.45 %
cellular organisms	root	All Organisms → cellular organisms	21.57 %
Viruses	superkingdom	All Organisms → Viruses	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.45 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	21.57 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.45 %
Nitrospinae/Tectomicrobia group	clade	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group	1.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.98 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.45 %
Candidatus Tectomicrobia	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	1.96 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.98 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.45 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1.96 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.98 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.45 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1.96 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.98 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.45 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1.96 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.98 %
Ornithinimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Ornithinimicrobiaceae	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.45 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1.96 %
Serinicoccus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Ornithinimicrobiaceae → Serinicoccus	0.98 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.45 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1.96 %
Serinicoccus marinus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Ornithinimicrobiaceae → Serinicoccus → Serinicoccus marinus	0.98 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101430416	Not Available	636	Open in IMG/M
3300000789\|JGI1027J11758_12909431	All Organisms → cellular organisms → Bacteria	1039	Open in IMG/M
3300000955\|JGI1027J12803_102359376	Not Available	502	Open in IMG/M
3300004267\|Ga0066396_10040959	Not Available	712	Open in IMG/M
3300004633\|Ga0066395_10314698	Not Available	860	Open in IMG/M
3300005186\|Ga0066676_11004924	Not Available	554	Open in IMG/M
3300005294\|Ga0065705_10012506	All Organisms → cellular organisms → Bacteria	4308	Open in IMG/M
3300005294\|Ga0065705_11099514	Not Available	523	Open in IMG/M
3300005295\|Ga0065707_10909173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Ornithinimicrobiaceae → Serinicoccus → Serinicoccus marinus	564	Open in IMG/M
3300005332\|Ga0066388_100728455	All Organisms → cellular organisms → Bacteria → Proteobacteria	1595	Open in IMG/M
3300005332\|Ga0066388_101007054	All Organisms → cellular organisms → Bacteria	1396	Open in IMG/M
3300005332\|Ga0066388_101907977	Not Available	1061	Open in IMG/M
3300005332\|Ga0066388_105181896	Not Available	662	Open in IMG/M
3300005332\|Ga0066388_105694481	Not Available	630	Open in IMG/M
3300005561\|Ga0066699_11252576	Not Available	509	Open in IMG/M
3300005713\|Ga0066905_101225663	Not Available	672	Open in IMG/M
3300005764\|Ga0066903_100817253	All Organisms → cellular organisms → Bacteria	1670	Open in IMG/M
3300005764\|Ga0066903_101184666	All Organisms → cellular organisms → Bacteria	1417	Open in IMG/M
3300005764\|Ga0066903_101944993	Not Available	1128	Open in IMG/M
3300005764\|Ga0066903_105625742	Not Available	659	Open in IMG/M
3300005937\|Ga0081455_10107700	Not Available	2221	Open in IMG/M
3300005937\|Ga0081455_10108032	Not Available	2217	Open in IMG/M
3300005937\|Ga0081455_10239519	All Organisms → cellular organisms → Bacteria	1334	Open in IMG/M
3300005937\|Ga0081455_10256506	Not Available	1276	Open in IMG/M
3300005981\|Ga0081538_10073308	All Organisms → cellular organisms → Bacteria	1872	Open in IMG/M
3300005985\|Ga0081539_10009037	All Organisms → cellular organisms → Bacteria	8460	Open in IMG/M
3300006049\|Ga0075417_10369736	Not Available	705	Open in IMG/M
3300006049\|Ga0075417_10500180	Not Available	611	Open in IMG/M
3300006844\|Ga0075428_100061091	All Organisms → cellular organisms → Bacteria	4126	Open in IMG/M
3300006844\|Ga0075428_100144352	All Organisms → cellular organisms → Bacteria	2587	Open in IMG/M
3300006844\|Ga0075428_101155418	Not Available	817	Open in IMG/M
3300006845\|Ga0075421_100623024	Not Available	1265	Open in IMG/M
3300006854\|Ga0075425_100677483	Not Available	1185	Open in IMG/M
3300006871\|Ga0075434_100239251	All Organisms → cellular organisms → Bacteria	1835	Open in IMG/M
3300006904\|Ga0075424_100614796	Not Available	1160	Open in IMG/M
3300007076\|Ga0075435_100671884	Not Available	900	Open in IMG/M
3300009012\|Ga0066710_103493509	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300009094\|Ga0111539_11076353	Not Available	934	Open in IMG/M
3300009094\|Ga0111539_11450878	Not Available	796	Open in IMG/M
3300009100\|Ga0075418_10128814	All Organisms → cellular organisms → Bacteria	2690	Open in IMG/M
3300009100\|Ga0075418_10525932	Not Available	1271	Open in IMG/M
3300009147\|Ga0114129_10316301	All Organisms → Viruses → Predicted Viral	2076	Open in IMG/M
3300009147\|Ga0114129_10719137	Not Available	1282	Open in IMG/M
3300009147\|Ga0114129_11124329	Not Available	982	Open in IMG/M
3300009147\|Ga0114129_11348149	Not Available	882	Open in IMG/M
3300009147\|Ga0114129_12925241	Not Available	564	Open in IMG/M
3300009156\|Ga0111538_10708738	Not Available	1275	Open in IMG/M
3300009162\|Ga0075423_10158356	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	2378	Open in IMG/M
3300009162\|Ga0075423_10398630	Not Available	1444	Open in IMG/M
3300009162\|Ga0075423_11591743	Not Available	702	Open in IMG/M
3300009553\|Ga0105249_10654268	Not Available	1108	Open in IMG/M
3300009792\|Ga0126374_10922123	Not Available	679	Open in IMG/M
3300010043\|Ga0126380_10991611	Not Available	707	Open in IMG/M
3300010043\|Ga0126380_11060477	Not Available	687	Open in IMG/M
3300010046\|Ga0126384_10490245	All Organisms → cellular organisms → Bacteria	1057	Open in IMG/M
3300010047\|Ga0126382_10153814	Not Available	1579	Open in IMG/M
3300010047\|Ga0126382_11361181	Not Available	645	Open in IMG/M
3300010359\|Ga0126376_11218030	Not Available	769	Open in IMG/M
3300010360\|Ga0126372_10329971	Not Available	1357	Open in IMG/M
3300010361\|Ga0126378_11423829	Not Available	785	Open in IMG/M
3300010362\|Ga0126377_11593533	Not Available	727	Open in IMG/M
3300010362\|Ga0126377_11712654	Not Available	704	Open in IMG/M
3300010376\|Ga0126381_101503262	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300010398\|Ga0126383_10401527	Not Available	1407	Open in IMG/M
3300010398\|Ga0126383_11523752	Not Available	758	Open in IMG/M
3300010398\|Ga0126383_13235144	Not Available	532	Open in IMG/M
3300011269\|Ga0137392_11123333	Not Available	643	Open in IMG/M
3300012212\|Ga0150985_103486632	Not Available	726	Open in IMG/M
3300012469\|Ga0150984_123479593	Not Available	1177	Open in IMG/M
3300012930\|Ga0137407_12238127	Not Available	522	Open in IMG/M
3300012948\|Ga0126375_10268591	Not Available	1166	Open in IMG/M
3300012948\|Ga0126375_10502446	Not Available	904	Open in IMG/M
3300012948\|Ga0126375_10768143	Not Available	759	Open in IMG/M
3300012948\|Ga0126375_11987358	Not Available	513	Open in IMG/M
3300012971\|Ga0126369_10413245	Not Available	1390	Open in IMG/M
3300012971\|Ga0126369_12311850	Not Available	624	Open in IMG/M
3300012971\|Ga0126369_13293776	Not Available	529	Open in IMG/M
3300015371\|Ga0132258_12436550	Not Available	1310	Open in IMG/M
3300015373\|Ga0132257_103647606	Not Available	560	Open in IMG/M
3300015373\|Ga0132257_103962553	Not Available	539	Open in IMG/M
3300016319\|Ga0182033_10888120	Not Available	789	Open in IMG/M
3300016357\|Ga0182032_10165814	All Organisms → cellular organisms → Bacteria	1649	Open in IMG/M
3300016371\|Ga0182034_11475625	Not Available	595	Open in IMG/M
3300016422\|Ga0182039_12270043	Not Available	501	Open in IMG/M
3300018482\|Ga0066669_11209004	Not Available	682	Open in IMG/M
3300027873\|Ga0209814_10200403	Not Available	862	Open in IMG/M
3300027907\|Ga0207428_10045211	All Organisms → cellular organisms → Bacteria	3548	Open in IMG/M
3300027909\|Ga0209382_10107969	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	3255	Open in IMG/M
3300027909\|Ga0209382_10454087	Not Available	1419	Open in IMG/M
3300027909\|Ga0209382_11253755	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	754	Open in IMG/M
3300031093\|Ga0308197_10341566	Not Available	567	Open in IMG/M
3300031572\|Ga0318515_10731720	Not Available	523	Open in IMG/M
3300031890\|Ga0306925_11338087	Not Available	710	Open in IMG/M
3300031910\|Ga0306923_11175245	Not Available	822	Open in IMG/M
3300032043\|Ga0318556_10673043	Not Available	539	Open in IMG/M
3300032060\|Ga0318505_10509877	Not Available	567	Open in IMG/M
3300032075\|Ga0310890_11345679	Not Available	585	Open in IMG/M
3300032205\|Ga0307472_100960213	Not Available	797	Open in IMG/M
3300032261\|Ga0306920_101930706	Not Available	829	Open in IMG/M
3300032261\|Ga0306920_103250087	Not Available	607	Open in IMG/M
3300033551\|Ga0247830_11596154	Not Available	522	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	59.80%
Host-Associated	Host-Associated	40.20%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.80%
Plants	Host-Associated → Plants	40.20%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere	30.39%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.82%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	29.41%
Loam	Environmental → Terrestrial → Soil → Loam	11.76%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.92%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	29.41%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.76%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.96%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	28.43%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	21.57%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.90%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	4.90%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.98%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1014304161	3300000364	Soil	MQHPHEVDIVKAVLGSQKIVVYGEDLLRHIVADGETMQASVAEIPIGRPESAQVLKAYFAQCGNVTWGKVLEAGQQIPGMERAMAADPRLNQE*
JGI1027J11758_129094312	3300000789	Soil	MQHPHEVDMVLAILDTQEIMVYGRAPLRPLGADGEAVPTAVARIPIGRPESADVLKAYFAACGTVTWAKVLEAGRQIPRLEQGMAADPRRNQA*
JGI1027J12803_1023593761	3300000955	Soil	GSQKIVVYGEDLLRHIVADGETMQASVAEIPIGRPESAQVLKAYFAQCGNVTWGKVLEAGQQIPGMERAMAADPRLNQE*
Ga0066396_100409591	3300004267	Tropical Forest Soil	MQHPHEVDIVKAVLGSQKIVVYGEDLLRHRVAEGETTRTTVAEIPIGRPESAAVLKHYFAQCGSVTWAKVLDAGQQIPRLERAMAADPRLTQE*
Ga0066395_103146982	3300004633	Tropical Forest Soil	MQHPHEVDMVLAVLDTQEIMVYERDLRRPLVADGEAGQTAVARIPIQRPESADVLKAYFAACGSVTWAKVLEAGRQIPRLERVMAANARRNLA*
Ga0066676_110049241	3300005186	Soil	MQHPHEVDMVLAVLDTREIIVYGRDLRRPLGADGEDVQTSVARIPIGRPESADVLKAYFAACGSVTWAKDLEAGRQIPRLERAMAADPRRNQA*
Ga0065705_100125061	3300005294	Switchgrass Rhizosphere	HGGPLQHPHEVDRVLAVLDTQEMMVDGRDLRRPLVAEGEDVQTSVASIPLGRPASADVLQASCAACGSVTWAKVLEAGGQIPRLERVRAADPRRHQA*
Ga0065705_110995141	3300005294	Switchgrass Rhizosphere	WVAASPRTRYAPGHAYPQTHGGPMQHPHEVDMVLAVLDTREILVYGRDVVRPLVADGEAGPMAVARIPMQRPASADVLKASFAACGSVTWAKVLEAGRQIPRLERAMAADPRRNQA*
Ga0065707_109091731	3300005295	Switchgrass Rhizosphere	MQHPHEVDMVLAVLDTREMVVYGRDPRPPLGADGEAGQTAVARIPIGRPESADVLKAYFAACGSVTWAKVLEAGRQIPRLEQGMAADPRRNQV*
Ga0066388_1007284551	3300005332	Tropical Forest Soil	MQHPHEVDSVLAVLGTREIVVYERDLRRPLGADGEAGQTVVARIPIGRPESADVLKASFAACGSVTWAKVLEAGRQIPRLERAMTADPRLHQA*
Ga0066388_1010070542	3300005332	Tropical Forest Soil	MQHPHEVDMVLAVLDTREMVVYGPDLPRPLGTDGEAMPMAVARIPIGRPESADVLKAYFAACGSVTWAKVLEAGRQVPRLERGMAAAPRRNQA*
Ga0066388_1019079771	3300005332	Tropical Forest Soil	MVLAILDTQEMMVYGRDLLRPLVADGGEGQTAVARIPIGRPESADVLKAYFVACGSVTWAKVLEAGRQISRLERAMAADPR
Ga0066388_1051818961	3300005332	Tropical Forest Soil	YAPGHAHPQIHGGPMQHPHEVDMVLAVLDTQEIMVYERDLRRPLVADGEAGQTAVARIPIQRPESADVLKAYFTACGSVTWAKVLDAGQQIPGMERAMAADPRLHQA*
Ga0066388_1056944811	3300005332	Tropical Forest Soil	MQHPHEVDIVKAVLGSQKIVVYGEDLLRHRVAEGETTRTTVAEIPIGRPESAAVLKHYFTQCGSVTWAKVLDAGQQIPRLERAMAADPRLTQE*
Ga0066699_112525762	3300005561	Soil	DTQEIMVYGRDLLRPIGADGEDVQTAVARIPIGHPGSADILKAYFAACGSVTWAKVLEAGRQIPRLERAMAADPRRNQACG*
Ga0066905_1012256631	3300005713	Tropical Forest Soil	MQHPHEVDIVLAVLDTREMVVYGPDLPRPLGTDGEAMPMAVARIPIGRPESADVLKAYFAACGSVTWAKVLEAGRQVPRLERGMAAAPRRNQA*
Ga0066903_1008172533	3300005764	Tropical Forest Soil	MQHPHEVDRVLAVLDTREIVVYGLDVVRPLGADEEAGPPAVARIPIQHPASADLLKAYFAACGSVTWAKVLEAGRQIPRLERGMAADPHRHQA*
Ga0066903_1011846662	3300005764	Tropical Forest Soil	MQHPHEIDIVLAVLGTKEIAVYGRDLLRHIGADGEAVQTSVARIPISRIESAHVLEAYFAKCGGVTWAKVLDAGQQIPTMERVMALDPRLNQE*
Ga0066903_1019449932	3300005764	Tropical Forest Soil	MQHPHEVDIVLAVLDTREIVVYGRDLRRPMGADGKDVQTAVARIPIRRPESADVLKAYFAACGSVTWAKVLEAGRQIPRLERVMAADPRRNQA*
Ga0066903_1056257421	3300005764	Tropical Forest Soil	MQHPHEVDMVLAVLDTQEIMVYERDLRRPLVADGEAGQTAVARIPIQRPESADVLKAYFTACGSVTWAKVLDAGQQIPGMERAMAADPRLHQA*
Ga0081455_101077001	3300005937	Tabebuia Heterophylla Rhizosphere	MQHPHEVEIVLAVLDTQEIVVYGSDLLHQCVAEGEVVQASVARIPIGRLESADLLKVYFAACGSVTWAKVLDAGQQIPRLERAMAADPRLHQE*
Ga0081455_101080321	3300005937	Tabebuia Heterophylla Rhizosphere	MQHPHEVDRVLAVLGTREIVVYERDLGRPLGADGEAGQTAVASIPMSRPESVDVLKASFAACGSVTWAKVLEAGRQIPRLERAMAADPRLHQA*
Ga0081455_102395191	3300005937	Tabebuia Heterophylla Rhizosphere	MQHPHEVDRVLAILDTQEMMVYGRDLLRPLVADGGEGQTAVARIPIGRPESADVLKAYFAACGSVTWAKVLEAGRQIPRLERAMAADPRLHQA*
Ga0081455_102565062	3300005937	Tabebuia Heterophylla Rhizosphere	MQHPHEVDMVLAILDTQEIMVYGRDLLRPLVAAGGEGQTAVARIPIGRPESADVLKAYFAACGSVTWAKVLEAGRQISRLERAMAADPRCNQA*
Ga0081538_100733081	3300005981	Tabebuia Heterophylla Rhizosphere	MQHPHEVDRVLAILDTQEIMVYGRDLLRPLVADGGEGQTAVARIPIGRPESADVLKAYFAACGSVTWAKVLEAGRQIPRLERAMAADPRLHQA*
Ga0081539_1000903711	3300005985	Tabebuia Heterophylla Rhizosphere	MQHPHEVDIVLAILDTREIVVYGHDLLRHWVADGEEVQAAVARIPIGRPESVDVLKVYFAQCGSVTWAKVLEAGQQIPGMERAMAADPRLNQE*
Ga0075417_103697362	3300006049	Populus Rhizosphere	MQHPHEVDIVKAVLGAQKIVVYGEDLLRHSVADGESTRATVAEIPIGRPESAEVLKVYFAQCGSVTWAKVLDAGQQIPGMERAMAADPRLNQE*
Ga0075417_105001801	3300006049	Populus Rhizosphere	EVDSVLAVLGTREIVVYERDLRRPLRADGEAGQTVVARIPIGRPESADVLKASFAACGSVTWAKVLEAGRQVPRLERGMAADPRLNQA*
Ga0075428_1000610914	3300006844	Populus Rhizosphere	MLLAMHTPRHTEALLQHPHEVDSVLAVLGTREIVVYERDLRRPLRADGEAGQTVVARIPIGRPESADVLKASFAACGSVTWAKVLEAGRQVPRLERGMAADPRLNQA*
Ga0075428_1001443523	3300006844	Populus Rhizosphere	MQHPHEVDIVKAVLGAQKIVVYGEDLLPHIVADGETRQTTVAEIPIGRHESAAVLRSYFAQCGNVTWAKVLHAGQQIPGMERAMAADPRLNQE*
Ga0075428_1011554183	3300006844	Populus Rhizosphere	MQHPHEVDMVLAILDTQEMVVYGRDLRRPLAADGEEGQTAVARIPIGRPESADVLKAYFAACGSVTWAKVLDDGRQIPRLERVMAADPRRNQA*
Ga0075421_1006230242	3300006845	Populus Rhizosphere	MQHPHEVDIVKAVLGSQKIVVYGEDLLRHIVADGETTQTTVAEIPIGRPESAAVLKSYFAQCGSVTWAKVLHAGQQVPGMERAMAADPRLNQE*
Ga0075420_1017019411	3300006853	Populus Rhizosphere	MQHPHEVDIVKAVLGAQKIVVYGEDLLPHIVADGETRQTTVAEIPIGRHESAAVLRSYFAQCGNVTWAKVLHAGQ
Ga0075425_1006774832	3300006854	Populus Rhizosphere	MLLAMHTPRHTEALLQHPHEVDSVLAVLGTREIVVYERDLRRPLRADGEAGQTVVARIPIGRPESADVLKASFAACGSVTWAKVLEAGRQVPRLDRGMAADPRLNQA*
Ga0075434_1002392511	3300006871	Populus Rhizosphere	MQHPHEVDIVKAVLGAQKIVVYGEDLLPHIVADGETRQTTVAEIPIGRHESAAVLRSYFAQCGNVTWAKVLHAGQQIPGMERAMA
Ga0075424_1006147961	3300006904	Populus Rhizosphere	MQHPHEVDIVKAVLGAQKIVVYGEDLLRHSVADGESTRATVAEIPIGRPESAEVLKVYFAQCGSVTWAKVLDAGQQIPGMERAMA
Ga0075435_1006718842	3300007076	Populus Rhizosphere	MLLAMHTPRHTEALLQHPHEVDSVLAVLGTREIVVYERDLRRPLRADGEAGQTVVARIPIGRPESADVLKASFAACGSVTWAKVLEAGRQVPRLERGMAAAPLRTQA*
Ga0066710_1034935091	3300009012	Grasslands Soil	MQHPHEVDIVLAVLDSREMAVYGNDLLRHMVADEEEVQASVARIPIGRPESVDVLKVYFAACGSVTWAKVLDAGRQSPGMERAMAADPRLNQG
Ga0111539_110763532	3300009094	Populus Rhizosphere	MQHPHEVDIVKAVLGAQKIVVYGEDLLRHSVADGESTRATVAEIPIGRPESAQVLKAYFAQCGNVTWGKVLEAGQQIPGMERAMAAD
Ga0111539_114508781	3300009094	Populus Rhizosphere	MLLAMHTPRHTEALLQHPHEVDSVLAVLGTREIVVYERDLRRPLRADGEAGQTVVARIPIGRPESADVLKASFAAFGSVTWAKVLEAGRQVPRLERGMAARVIASS*
Ga0075418_101288143	3300009100	Populus Rhizosphere	MLLAMVSTQTEGGTMQHPHEVDIVKAVLGAQKIVVYGEDLLPHIVADGETRQTTVAEIPIGRHESAAVLRSYFAQCGNVTWAKVLHAGQQIPGMERAMAADPRLNQE*
Ga0075418_105259321	3300009100	Populus Rhizosphere	MVLAILDTQEMVVYGRDLRRPLAADGEEGQTAVARIPIGRPESADVLKAYFAACGSVTWAKVLDVGRQLPRLERAMAADPHRTQA*
Ga0114129_103163011	3300009147	Populus Rhizosphere	MVLAVLDSREMAVYGSDLLYHLGADGEEVQASVARIPMGRPEAVDVRNVYGAACGSVTGAKVLDAGRQIPGLERAMATEPRRHQG*
Ga0114129_107191371	3300009147	Populus Rhizosphere	MQHPHEVDIVLAVLDTQEIMVYGRDLLRPMAADGEEGQTAVARIPIGRPESADVLKAYFAACGSVTWAKVLDDGRQIPRLERVMAADPRRNQA*
Ga0114129_111243291	3300009147	Populus Rhizosphere	KAVLGAQKIVVYGEDLLPHIVADGETRQTTVAEIPIGRHESAAVLRSYFAQCGNVTWAKVLHAGQQIPGMERAMAADPRLNQE*
Ga0114129_113481492	3300009147	Populus Rhizosphere	MQHPHEVDMVLAILDTREMVVYGPDLPRPLGTDGEAMPMAVARIPIGRPESADVLKAYFAACGSVTWAKVLEAGRQVPRLERGMAAAPRHTQA*
Ga0114129_129252411	3300009147	Populus Rhizosphere	HEVDIVKAVLGSQKIVVYGEDLLRHIVADGETMQASVAEIPIGRPESAQVLKAYFAQCGNVTWGKVLEAGQQIPGMERAMAADPRLNQE*
Ga0111538_107087382	3300009156	Populus Rhizosphere	VDIVLAVLDTQEIMVYGRDLLRPMAADGEEGQTAVARIPIGRPESADVLKAYFAACGSVTWAKVLDAGRQLPRLERVMAADPRRNQA*
Ga0075423_101583564	3300009162	Populus Rhizosphere	MLLATNTTQTQGGIMQHPHEVDIVKAVLGAQKIVVYGEDLLRHSVADGESTRATVAEIPIGRPESAEVLKVYFAQCGSVTWAKVLDAGQQIPGMERAMAADPRLNQE*
Ga0075423_103986302	3300009162	Populus Rhizosphere	MQPPHEVDIVLAVLDTQEIMVYGRDLLRPMAADGEEGQTAVARIPIGRPESADVLKAYFAACGSVTWAKVLDDGRQIPRLERVMAADPRRNQA*
Ga0075423_115917431	3300009162	Populus Rhizosphere	MQHPHEVDMVLAVLDTREMVVYGPDLPRPLGTDGEAMPMAVARIPIGRPESADVLKAYFAACGSVTWAKVLEAGRQVPRLERGMAAAPLRTQA*
Ga0105249_106542683	3300009553	Switchgrass Rhizosphere	MQHPHEVDMVLAVLDTREMVVYGPDLPRPLGTDGEAMPMAVARIPMQRPASADVLKASFAACGSVTWAKVLEAGRQIPRLERGMAADPRCNQA*
Ga0126374_109221231	3300009792	Tropical Forest Soil	MQHPHEVDRVLAVLDTREMVVYGPDLPRPLGTDGEAMPMAVARIPIGRPESADVLKAYFAACGSVTWAKVLEAGRQVPRLERGMAAAPLRTQA*
Ga0126380_109916111	3300010043	Tropical Forest Soil	MQHPHEVDMVLAVLDTREMVVYGPDLPRPLGTDGEAMPMAVARIPIGRPESADVLKAYFAACGSVTWTKVLEAGRQVPRLERGMAAAPSRTQA*
Ga0126380_110604771	3300010043	Tropical Forest Soil	MQHPHEVEIVLAVLDTQEIVVYGSDLLHQCVAEGEAVQASVARIPIGRLESADLLKVYFAQCGSVTWAKVLDAGQQIPRLERAMAADTRLHQE*
Ga0126384_104902452	3300010046	Tropical Forest Soil	MQHPHEVDRVLAVLDTREIVVYGLDVVRPLGADGEAGPPAVARIPIQHPASADILKAYFAACGSVTWAKVLEAGRQISRLERAMA
Ga0126382_101538142	3300010047	Tropical Forest Soil	MQHPHEVEIVLAVLDTQEIVVYGSDLLHQCVAEGEVGQASVARIPIGRLESADLLKVYFAQCGSVTWAKVLDAGQQIPRLERAMAADTRLHQE*
Ga0126382_113611811	3300010047	Tropical Forest Soil	MVLAILDTQEMMVYGRDLLRPLVAAGGEGQTAVARIPIGRPESADILKAYFAACGSVTWAKVLEAGRQISRLERAMAADPRHNQA*
Ga0126376_112180301	3300010359	Tropical Forest Soil	MQHPHEVDIVLAVLDTREMVVYGPDLPRPLGTAGEAMQIVMARIPIGRPESADVLKAYFAACGSVTWTKVLEAGRQVPRLERGMAAAPRRTQA*
Ga0126372_103299712	3300010360	Tropical Forest Soil	MVLAVLDTQEIMVYERDLRRPLVADGEAGQTAVARIPIQRPESADVLKAYFTACGSVTWAKVLDAGQQIPGMERAMAADPRLHQA*
Ga0126378_114238291	3300010361	Tropical Forest Soil	MQHPHEVDIVLAVLDTREIVVYGRDLRRPMGADGKDVQTAVARIPIGRPESADVLKAYFAACGSVTWAKVLEAGRQIPRLERVMAANARRNLA*
Ga0126377_115935331	3300010362	Tropical Forest Soil	MVLAVLGTREIVVYERDLGRPLGADGEAGQTAVARIPMSRPESVDVLKASFAACGSVTWAKGLEAGRQISRLERGMAADPRRNQA
Ga0126377_117126541	3300010362	Tropical Forest Soil	MQHPHEVDIVLAVLDTREMVVYGRDPLRPMVADGEAVPTAVARIPIGRPESADVLKAYFAACGSVTWAKVLEAGLQIPRLERGMATDPHRNQA*
Ga0126381_1015032622	3300010376	Tropical Forest Soil	MQHPHEVDIVLAVLDTREIVVYGRDLRRPMGADGKDVQTAVARIPIGRPESADVLKAYFAACGSVTWAKVLDAGRQIPRLERAMAADPRRNQA*
Ga0126383_104015272	3300010398	Tropical Forest Soil	MQHPHEVEIVLAVLDTQEIVVYGSDLLHQCVAEGEVGQASVARIPIGRLESADLLKVYFAQCGSVTWAKVLDAGQQIPRLERAMAADPRLHQE*
Ga0126383_115237522	3300010398	Tropical Forest Soil	SQKIVVYGEDLLRHRVAEGETTRTTVAEIPIGRPESAAVLKHYFAQCGSVTWAKVLDAGQQIPRLERAMAADPRLTQE*
Ga0126383_132351441	3300010398	Tropical Forest Soil	MQHPHEVDIVLAVLGTREIVVYGRDLRRPMGADGKDVQTAVARIPIGRPESADVLKAYFAACGSVTWAKVLDAGRQIPRLERAMAADPRRNQA*
Ga0137392_111233331	3300011269	Vadose Zone Soil	MVLAVLDTQEIMVYGRDLLRPLVADGEEGQTAVARIPIQRLESADVLKAYFAACGSVTWAKVLDAGRQIPRLEQAMTADPRLNQA*
Ga0150985_1034866321	3300012212	Avena Fatua Rhizosphere	MQHPHEVDIVKAVLGSQKIVVYGEDLPRHSVADGETTRATVAEIPIGRLESAQVLERYFAECGSVTWAKVLDAGQQ
Ga0150984_1234795931	3300012469	Avena Fatua Rhizosphere	MQHPHDVDIVKAVLGSQKIVVYGEALLRHLVADGETMQATVAEIPIGRPESADVLKVYFAQCGNVTWGKVLDAGQQIPGMERALAADPRLNQE*
Ga0137407_122381271	3300012930	Vadose Zone Soil	MVLAVLDTQEIMVYGRDLLRPLVADGEEGQTAVARIPIQRLESADVLKAYFAACGSVTWAKVLDAGRQLPRLERVMAADPRRNQA*
Ga0126375_102685914	3300012948	Tropical Forest Soil	MQHPHELDIVLAVLGTEEIAVYGRDLLRHIVADGEAVQTSVARIPIGRIESAQVLEAYFAMCGGVTWAKVLDAGRQIPGMERAMASDPRLSQE*
Ga0126375_105024461	3300012948	Tropical Forest Soil	MQHPHEVDIVLAVLDTREMVVYGRDLLRPMVADVEAVPTAVARIPIQHPASADLLKAYFAACGSVTWAKVLEAGRQIPRLERVMAADPRRNQA*
Ga0126375_107681431	3300012948	Tropical Forest Soil	MQHPHEVDIVKAVLGSQKIVVYGEDLLRHRVAEGETTRTTVAEIPIGRPESAAVLKHYFTQCGSVPWAKVLNAGQQIPRLERAM
Ga0126375_119873581	3300012948	Tropical Forest Soil	MAVLDTREMVVYGPDLPRPLGTDGEAMPMAVARIPIGRPESADVLKAYFAACGSVTWAKVLEAGRPVPRLERGMAAAPRRTQA*
Ga0126369_104132452	3300012971	Tropical Forest Soil	MQDPHTVDIVKAVLGSQKIVVYGEDLLRHMVADGETTRATVAEIPIGRPESAEVLKVYFAKCGSVTWAKVLDAGQQIPGMERAMAADPRLNQE*
Ga0126369_123118501	3300012971	Tropical Forest Soil	MQHPHEVDRVLAVLDTREIVVYGLDVVRPLGADEEAGPPAVARIPIQHPASADLLKAYFAACGSVTWAKVLEAGRQIPRLERG
Ga0126369_132937761	3300012971	Tropical Forest Soil	MQHPHEVDMVLAVLDTREMVVYGRDLRRSLEADGEAGPTAVARIPIGRPESADVLKAYFAACGSVTWAKVLEVGRQIPRLERGMAADPRRPEAGDPRHHQQC
Ga0132258_124365501	3300015371	Arabidopsis Rhizosphere	MVLAVLDTREIVVYGRDLRRPKVADGEEVQTAVASIPSGRPESADVLQAYFAACGSVTWAKVLEAGRQVPRLERGMAADPRRNQA*
Ga0132257_1036476061	3300015373	Arabidopsis Rhizosphere	MVLAVLDTREIVVYGRDLRRPKVADGEEVQTAVASIPSGRPESADVLQAYFAACGSVTWAKVLEAGRQVLRLERGMAAAPRRTQA*
Ga0132257_1039625532	3300015373	Arabidopsis Rhizosphere	MVLAVLDTREIVVYGRDLGRPLGADGEAGQTAVARIPIGRPESADVLKAYFAACGSVTWAKVLEAGRQIPRLERGMAADPRRNQA*
Ga0182033_108881201	3300016319	Soil	MQHPHEVDIVLAVLDTREIVVYGRDLRRPMGTDGKDVQMAVARIPIGRPESADVLKAYFAACGSVTWAKVLEAGRQVPRLERGMAADPHRHQA
Ga0182032_101658142	3300016357	Soil	MQHPHEVDIVLAVLDTREIVVYGRDLRRPMGTDGKDVQMAVARIPIGRPESADVLKAYFAACGSVTWAKVLDAGRQIPRLERAMAADPRRNQA
Ga0182034_114756251	3300016371	Soil	MQHPHEVDMVLAILDTQEIMVYGRDLRRPLVADGEDVPAAVARIPIGRPASADVLKAYFAACGSVTWAKVLEAGRQIPRLEQGMAADPRLHQA
Ga0182039_122700431	3300016422	Soil	QHPHEVDMVLAILDTQEIMVYGRELRRPLVADGEDVPAAVARIPIGRPASADVLKAYFAACGSVTWAKVLEAGRQIPRLEQGMAADPRRNQV
Ga0066669_112090041	3300018482	Grasslands Soil	MQHPHDVDIVKAVLGSQKIVVYGEALLRHLVADGETMQATVAEIPIGRPESADVLKVYFAQCGNVTWGKVLDAGQQIPGMERAMAADPRLNQE
Ga0209814_102004032	3300027873	Populus Rhizosphere	MLLAMHTPRHTEALLQHPHEVDSVLAVLGTREIVVYERDLRRPLRADGEAGQTVVARIPIGRPESADVLKASFAACGSVTWAKVLEAGRQVPRLERGMAADPRLNQA
Ga0207428_100452115	3300027907	Populus Rhizosphere	MQHPHEVDIVKAVLGAQKIVVYGEDLLPHIVADGETRQTTVAEIPIGRHESAAVLRSYFAQCGNVTWAKVLHAGQQIPGMERAMAADPRLNQE
Ga0209382_101079695	3300027909	Populus Rhizosphere	MQHPHEVDIVKAVLGAQKIVVYGEDLLRHSVADGESTRATVAEIPIGRPESAEVLKVYFAQCGSVTWAKVLDAGQQIPGMERAMAADPRLNQE
Ga0209382_104540872	3300027909	Populus Rhizosphere	MQHPHEVDIVKAVLGSQKIVVYGEDLLRHIVAYGETTQTTVAEIPIGRPESAAVLKSYFAQCGSVTWAKVLHAGQQVPGMERAMAADPRLNQE
Ga0209382_112537552	3300027909	Populus Rhizosphere	MQHPHEVDIVKAVLGSQKIVVYGEDLLRHIVADGETMQASVAEIPIGRPESAQVLKAYFAQCGNVTWGKVLEAGQQIPGMERAMAADPRLNQE
Ga0308197_103415662	3300031093	Soil	MQHPHEVDIVLAVLDTQEIMVYGRDLLRPLVADGEEGQTAVARIPIGRPESADVLKAYFAACGSVTWAKVLEAGRQIPRLERAMAADPRLNQA
Ga0318515_107317201	3300031572	Soil	MQHPHEVDMVLAVLDTREMVVYGPDLPHPLRTDGEAMPMAVARIPIGRPESADVLKAYFAACGSVTWAKVLEAGRQVPRLERGLAAAPRRTQA
Ga0306925_113380871	3300031890	Soil	MQHPHEVDIVLAVLDTREIVVYGRDLRRPMGADGKDVQMAVARIPIGRPESADVLKAYFAACGSVTWAKVLDAGRQIPRLERAMAADPRRNQA
Ga0306923_111752451	3300031910	Soil	MQHPHEVDIVKAVLGSQKIVVYGEDLLRHRVAEGETTRTTVAEIPIGRPESAAVLKHYFTQCGSVTWAKVLDAGQQIPRLERAMAADPRLTQE
Ga0318556_106730431	3300032043	Soil	LGSQKIVVYGEDLLRHRVAEGETTRTTVAEIPIGRPESAAVLKHYFTQCGSVTWAKVLDAGQQIPRLERAMAADPRLTQE
Ga0318505_105098772	3300032060	Soil	VDIVKAVLGSQKIVVYGEDLLRHRVAEGETTRTTVAEIPIGRPESAAVLKHYFTQCGSVTWAKVLDAGQQIPRLERAMAADPRLTQE
Ga0310890_113456791	3300032075	Soil	MQHPHEVDIVKAVLGSQKIVVYGEDLLRHIVADGETMRATVAEIPIGRHESAEVLKCYFAQCGLVTWAKVLDAGQQVLGMERAMAKDPRLDQE
Ga0307472_1009602131	3300032205	Hardwood Forest Soil	MQHPHEVDMVLAVLDTREMVVYGPDLPRPLGTDGEAMPMAVARIPIGRPESADVLKAYFAACGSVTWAKVLEAGRQVPRLERGMAAAPLRTQA
Ga0306920_1019307061	3300032261	Soil	RDDEVMLPPVHRLPQHHACVARVAAPPRTRYAPGHEHQTHGGPMQHPHEVDIVLAVLDTREIVVYGRDLRRPMGTDGKDVQMAVARIPIGRPESADVLKAYFAACGSVTWAKVLDAGRQIPRLERAMAADPRRNQA
Ga0306920_1032500871	3300032261	Soil	VDSVLAVLDSREMAVDGRELLHHLVADGEEVQASVASIPMGRPESVDVLNVYVAACGSLTGAKVLDAGRQIPGLERAMATDPRRNQG
Ga0247830_115961541	3300033551	Soil	MQHPHEVDSVLAVLGTREIVVYERDLRRPLRADGEAGQTVVARIPIGRPESADVLKASFAACGSVTWAKVLEAGRQVPRLERGMAADPRLNQA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100630

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences