Metagenome / Metatranscriptome Family F100644

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F100644
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	71 residues
Representative Sequence	RLGFESALHARTRCKEYDQVMGEMTAQIEDLERQYPGVDVAEPFTRGYERGRDYYQQLCSESKAA
Number of Associated Samples	84
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.00 %
% of genes near scaffold ends (potentially truncated)	96.08 %
% of genes from short scaffolds (< 2000 bps)	84.31 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (86.275 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.628 % of family members)
Environment Ontology (ENVO)	Unclassified (36.275 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (76.471 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.29% β-sheet: 0.00% Coil/Unstructured: 38.71%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF13620	CarboxypepD_reg	4.90
PF00072	Response_reg	2.94
PF11345	DUF3147	1.96
PF02518	HATPase_c	1.96
PF03358	FMN_red	1.96
PF07689	KaiB	0.98
PF11752	DUF3309	0.98
PF06202	GDE_C	0.98
PF04075	F420H2_quin_red	0.98
PF07228	SpoIIE	0.98
PF04430	DUF498	0.98
PF00903	Glyoxalase	0.98
PF04542	Sigma70_r2	0.98
PF13586	DDE_Tnp_1_2	0.98
PF12779	WXXGXW	0.98
PF11941	DUF3459	0.98
PF13668	Ferritin_2	0.98
PF01594	AI-2E_transport	0.98
PF00210	Ferritin	0.98
PF13450	NAD_binding_8	0.98
PF00069	Pkinase	0.98
PF06170	DUF983	0.98
PF07883	Cupin_2	0.98
PF07730	HisKA_3	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.92
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.98
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.98
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.98
COG1504	Uncharacterized conserved protein, DUF498 domain	Function unknown [S]	0.98
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.98
COG3408	Glycogen debranching enzyme (alpha-1,6-glucosidase)	Carbohydrate transport and metabolism [G]	0.98
COG3737	Uncharacterized protein, contains Mth938-like domain	Function unknown [S]	0.98
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.98
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.98
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.98
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.98
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.98
COG5349	Uncharacterized conserved protein, DUF983 family	Function unknown [S]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.27 %
Unclassified	root	N/A	13.73 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.27 %
Unclassified	root	N/A	13.73 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.27 %
Unclassified	root	N/A	13.73 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	60.78 %
Unclassified	root	N/A	13.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	50.00 %
Unclassified	root	N/A	13.73 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	48.04 %
Unclassified	root	N/A	13.73 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.94 %
Acidobacteria bacterium 13_1_20CM_4_56_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	1.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	48.04 %
Unclassified	root	N/A	13.73 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.94 %
Acidobacteria bacterium 13_1_20CM_4_56_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	1.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	48.04 %
Unclassified	root	N/A	13.73 %
Acidobacteria bacterium 13_1_20CM_4_56_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	1.96 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	48.04 %
Unclassified	root	N/A	13.73 %
Acidobacteria bacterium 13_1_20CM_4_56_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	1.96 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10722717	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300002245\|JGIcombinedJ26739_101432545	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	585	Open in IMG/M
3300002245\|JGIcombinedJ26739_101712471	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	528	Open in IMG/M
3300004080\|Ga0062385_10051223	All Organisms → cellular organisms → Bacteria	1787	Open in IMG/M
3300004080\|Ga0062385_11064422	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300005332\|Ga0066388_107593901	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300005533\|Ga0070734_10260063	All Organisms → cellular organisms → Bacteria	995	Open in IMG/M
3300005534\|Ga0070735_10023325	All Organisms → cellular organisms → Bacteria	4415	Open in IMG/M
3300005538\|Ga0070731_10158189	All Organisms → cellular organisms → Bacteria	1503	Open in IMG/M
3300005591\|Ga0070761_10956345	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300005712\|Ga0070764_10237340	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1034	Open in IMG/M
3300005712\|Ga0070764_10852974	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	569	Open in IMG/M
3300005921\|Ga0070766_10158001	All Organisms → cellular organisms → Bacteria → Acidobacteria	1393	Open in IMG/M
3300006854\|Ga0075425_102879099	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	528	Open in IMG/M
3300006893\|Ga0073928_10180462	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1672	Open in IMG/M
3300006893\|Ga0073928_10366902	All Organisms → cellular organisms → Bacteria	1062	Open in IMG/M
3300010339\|Ga0074046_10335367	Not Available	923	Open in IMG/M
3300010361\|Ga0126378_13001841	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300010362\|Ga0126377_11918902	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300010379\|Ga0136449_102026532	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	848	Open in IMG/M
3300010398\|Ga0126383_10290770	All Organisms → cellular organisms → Bacteria	1626	Open in IMG/M
3300012361\|Ga0137360_11078237	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300012683\|Ga0137398_10153744	Not Available	1495	Open in IMG/M
3300014495\|Ga0182015_10436387	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	842	Open in IMG/M
3300014501\|Ga0182024_11314898	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	837	Open in IMG/M
3300014501\|Ga0182024_12028075	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	635	Open in IMG/M
3300016319\|Ga0182033_12039949	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300017823\|Ga0187818_10017609	All Organisms → cellular organisms → Bacteria	3054	Open in IMG/M
3300017955\|Ga0187817_10694645	Not Available	649	Open in IMG/M
3300017955\|Ga0187817_11021113	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M
3300018007\|Ga0187805_10060863	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1697	Open in IMG/M
3300018035\|Ga0187875_10377925	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	759	Open in IMG/M
3300018047\|Ga0187859_10036330	All Organisms → cellular organisms → Bacteria	2647	Open in IMG/M
3300018468\|Ga0066662_12325134	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300019278\|Ga0187800_1768648	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	915	Open in IMG/M
3300019786\|Ga0182025_1151807	All Organisms → cellular organisms → Bacteria → Acidobacteria	905	Open in IMG/M
3300019881\|Ga0193707_1064371	All Organisms → cellular organisms → Bacteria	1148	Open in IMG/M
3300020581\|Ga0210399_10062435	All Organisms → cellular organisms → Bacteria → Acidobacteria	3008	Open in IMG/M
3300021088\|Ga0210404_10412442	Not Available	756	Open in IMG/M
3300021171\|Ga0210405_11212366	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300021171\|Ga0210405_11249877	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548	Open in IMG/M
3300021178\|Ga0210408_10314863	Not Available	1248	Open in IMG/M
3300021180\|Ga0210396_10844815	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	783	Open in IMG/M
3300021181\|Ga0210388_10787961	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	824	Open in IMG/M
3300021181\|Ga0210388_11711194	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300021402\|Ga0210385_10542663	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	884	Open in IMG/M
3300021403\|Ga0210397_10224058	All Organisms → cellular organisms → Bacteria	1354	Open in IMG/M
3300021404\|Ga0210389_10035990	All Organisms → cellular organisms → Bacteria	3803	Open in IMG/M
3300021420\|Ga0210394_11424753	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300021432\|Ga0210384_10445717	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1166	Open in IMG/M
3300021432\|Ga0210384_11721329	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300021432\|Ga0210384_11895502	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300021433\|Ga0210391_10469257	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300021433\|Ga0210391_10907517	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	687	Open in IMG/M
3300021433\|Ga0210391_10941180	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	673	Open in IMG/M
3300021479\|Ga0210410_11366948	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300022557\|Ga0212123_10417874	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300022732\|Ga0224569_106076	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	889	Open in IMG/M
3300022733\|Ga0224562_1016460	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300023019\|Ga0224560_102485	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	1245	Open in IMG/M
3300024227\|Ga0228598_1063831	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	734	Open in IMG/M
3300024271\|Ga0224564_1033373	Not Available	972	Open in IMG/M
3300024271\|Ga0224564_1095228	Not Available	602	Open in IMG/M
3300025939\|Ga0207665_10495534	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	943	Open in IMG/M
3300027548\|Ga0209523_1021998	All Organisms → cellular organisms → Bacteria → Acidobacteria	1251	Open in IMG/M
3300027568\|Ga0208042_1188677	Not Available	511	Open in IMG/M
3300027676\|Ga0209333_1108939	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	753	Open in IMG/M
3300027727\|Ga0209328_10194422	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	612	Open in IMG/M
3300027745\|Ga0209908_10038213	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1012	Open in IMG/M
3300027767\|Ga0209655_10067673	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300027768\|Ga0209772_10202333	Not Available	629	Open in IMG/M
3300027826\|Ga0209060_10193403	Not Available	938	Open in IMG/M
3300027853\|Ga0209274_10729748	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300027869\|Ga0209579_10025799	All Organisms → cellular organisms → Bacteria → Acidobacteria	3249	Open in IMG/M
3300027869\|Ga0209579_10235225	Not Available	983	Open in IMG/M
3300027869\|Ga0209579_10664341	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300027879\|Ga0209169_10043342	All Organisms → cellular organisms → Bacteria → Acidobacteria	2354	Open in IMG/M
3300027879\|Ga0209169_10732024	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300027884\|Ga0209275_10005819	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5136	Open in IMG/M
3300027889\|Ga0209380_10132664	All Organisms → cellular organisms → Bacteria → Acidobacteria	1452	Open in IMG/M
3300027895\|Ga0209624_10202634	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1318	Open in IMG/M
3300028874\|Ga0302155_10026031	All Organisms → cellular organisms → Bacteria	2826	Open in IMG/M
3300028906\|Ga0308309_10017825	All Organisms → cellular organisms → Bacteria	4623	Open in IMG/M
3300029883\|Ga0311327_10093823	All Organisms → cellular organisms → Bacteria	2232	Open in IMG/M
3300029999\|Ga0311339_10567613	Not Available	1137	Open in IMG/M
3300030618\|Ga0311354_11736124	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300030879\|Ga0265765_1070555	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506	Open in IMG/M
3300031236\|Ga0302324_100931686	All Organisms → cellular organisms → Bacteria	1190	Open in IMG/M
3300031708\|Ga0310686_105989330	All Organisms → cellular organisms → Bacteria → Acidobacteria	2919	Open in IMG/M
3300031708\|Ga0310686_106721189	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300031708\|Ga0310686_110466711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1481	Open in IMG/M
3300031715\|Ga0307476_10074624	All Organisms → cellular organisms → Bacteria	2358	Open in IMG/M
3300031718\|Ga0307474_10899835	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	700	Open in IMG/M
3300031820\|Ga0307473_11266344	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300031954\|Ga0306926_11056109	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	963	Open in IMG/M
3300031962\|Ga0307479_10610854	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1072	Open in IMG/M
3300032160\|Ga0311301_10290121	All Organisms → cellular organisms → Bacteria → Proteobacteria	2635	Open in IMG/M
3300032205\|Ga0307472_101283740	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	704	Open in IMG/M
3300032515\|Ga0348332_13547492	All Organisms → cellular organisms → Bacteria	1914	Open in IMG/M
3300032892\|Ga0335081_12642237	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.06%
Host-Associated	Host-Associated	2.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.33%
Aquatic	Environmental → Aquatic	13.73%
Plants	Host-Associated → Plants	2.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.45%
Freshwater	Environmental → Aquatic → Freshwater	9.80%
Peat	Environmental → Terrestrial → Peat	4.90%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.94%
Sediment	Environmental → Aquatic → Sediment	0.98%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.98%
Loam	Environmental → Terrestrial → Soil → Loam	18.63%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.80%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.84%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.90%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.49%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.53%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.65%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.88%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.90%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.92%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	2.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.98%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.63%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	9.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.82%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	6.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.90%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.92%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	2.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.94%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	2.94%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.96%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.98%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.98%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.98%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.98%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019278	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022732	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU1	Host-Associated	Open in IMG/M
3300022733	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU3	Environmental	Open in IMG/M
3300023019	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU1	Environmental	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027745	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2M	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028874	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_1	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029883	I_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030879	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_107227171	3300001593	Forest Soil	DEKFYRMGFEAALHSRMRCKEYDQVMGEMNAKIEELEQQHPGTEVGEAFRRGYERGRDHYQQLCNESKAA*
JGIcombinedJ26739_1014325451	3300002245	Forest Soil	GFESALHARTRCKEYDQVMGEMNAAIRDLELLNPGVDVATPFTRGYERGRDYYQQLCGKSKAA*
JGIcombinedJ26739_1017124711	3300002245	Forest Soil	HYSTLGRNFGNDETFYRLGFESALHARTRCKEYDQTLAEMNAKIEDLERQYPGVEVAEPFTRGYERGRDHYQHLCDKSTAA*
Ga0062385_100512233	3300004080	Bog Forest Soil	SALHARTRCKEYDEVMGEMTAEIEELERQHPGGNVAEPFTRGYERGRDYYQQLCSESEAA
Ga0062385_110644222	3300004080	Bog Forest Soil	QFYRLGFESALHARTRCKEYDQVMGEMNAEIEDLERQHPGVDVAEPFTRGYERGRDYYQQLCSESKAA*
Ga0066388_1075939012	3300005332	Tropical Forest Soil	RTRCKEYDQTLGEMDAKIDELEQQYPGRDIAGPFTRGYERGRNYYQHLCDESRAA*
Ga0070734_102600631	3300005533	Surface Soil	ESEHYQTHGQKPGDNEKYYRLGFESALHARTRCKEYDQVMGEMNAAIRDLERGNPGVDVATPFTRGYERGRDYYQELCNKSKAA*
Ga0070735_100233258	3300005534	Surface Soil	QKPGDNEKYYRLGFESALHARTRCKEYDQVMGEMNAAIRDLEQGNPGVDVATPFTRGYERGRDYYQELCNKSKAA*
Ga0070731_101581894	3300005538	Surface Soil	RLGFESALHARTRCKEYDQVMGEMNAAIRDLEQGNPGVDVATPFTRGYERGRDYYQELCNKSKAA*
Ga0070761_109563451	3300005591	Soil	EDEKFYRLGFESALHARTRCKEYDQVMGEMNAEIEELERQHPGVDVAEPFTRGYERGRDYYQQLCSESRAA*
Ga0070764_102373403	3300005712	Soil	FGRNLSEDEKFYRLGFESALHARTRCKEYDQVLAEMTVDIEELERRYPGAQVAEPFRRGYERGRDYYQRLCGESKAA*
Ga0070764_108529742	3300005712	Soil	LRSAEREHYSSRGRNFTEDEKFYRLGFESALHARTRCKEYDQVLAEMDAKIEEVELQYPGKQAAEPFRKGYERGRDYYQRLCEEAKVA*
Ga0070766_101580012	3300005921	Soil	RMGFESALHARTRCKEYDQVMGEMTAQIEELEQQYPGAEVSEAYQRGYERGRDYYQQLCNESKAA*
Ga0075017_1000167271	3300006059	Watersheds	ALHARMRCQEYDQVLAEMSVQIEELERQYPGTEVADAFTRGYQRGREHYQEMCNESKAA*
Ga0079220_109720662	3300006806	Agricultural Soil	RCREFDQVSSEMANHIEEVERAHPGEEVSDAFTRGYQRGREYYERMCEESKAA*
Ga0075425_1028790991	3300006854	Populus Rhizosphere	NFGDDEIFYRLGFEAALHARTRCKEYDQTLGEMNAKLEELEQQYPGRDVAEPFIRGYERGRDYYQHLCDESRAA*
Ga0073928_101804625	3300006893	Iron-Sulfur Acid Spring	FGNDEKFYRLGFEAALHARTRCKEYDQTLGEMDSKIEDLERQHPGIDVAEPFRKGYERGRDYYQKLCNESKAA*
Ga0073928_103669023	3300006893	Iron-Sulfur Acid Spring	YYRLGFESALHARTRCKEYDQVMGEMNAAIRDLERGNPGVDVATPFTRGYERGRDYYQELCNKSKVA*
Ga0074046_103353672	3300010339	Bog Forest Soil	ALHARTRCKEYDQVMGEMSAQIEDLEHQNPGVNVAEPLTRGYERGRDYYQELCSKQKAA*
Ga0126378_130018411	3300010361	Tropical Forest Soil	EAALHARTRCKEYDQTLGEMDAKIADLEQQYPGRDVAEPFSRGYERGRDYYQHLCDESKAA*
Ga0126377_119189023	3300010362	Tropical Forest Soil	NFGDDEIFYRLGFEAALHARTRCKEYDQTLAEMNVKLEELEQQYPGRDVAEPFTRGYERGRDYYQHLCDESRAA*
Ga0136449_1020265321	3300010379	Peatlands Soil	HYSAQGKNFGEDEKFYRAGFEAALHARTRCKEYDQVLSEMTVKLEEVQKENPGSNVAEPFTKGYERGRDYYQQICDQSKAA*
Ga0126383_102907704	3300010398	Tropical Forest Soil	HGPNFGDDEIFYRLGFEAALHARTRCKEYDQTLGEMDAKIADLEQQYPGRDVAEPFSRGYERGRDYYQHLCDESKAA*
Ga0137360_110782371	3300012361	Vadose Zone Soil	DEKFYRQGFESALHARTRCKEYDQVLAEMNAEVEELERQHPGAEVAEPFRRGYERGRDYYQRLCDESRAA*
Ga0137398_101537443	3300012683	Vadose Zone Soil	FQAALHARTRCKEYDQVLSEMSVQVEELERQHPGAEVTEPFTKGFERGREHYQELCNQSRAA*
Ga0182015_104363872	3300014495	Palsa	RCKEYDQVLGEMTAKTEELEKQYPGVDVAGPFTRGYERGREHYQHLCTESKAA*
Ga0182024_113148981	3300014501	Permafrost	RSAEREHYSAQGRNFDGDEKFYRIGFESALHARTRCKEYDQVLAEMGAKLEEVQQQYPNASVEEPFTKGYERGRDYYQQICDKSKAA*
Ga0182024_120280751	3300014501	Permafrost	FEAALHARSRCKEYDQVLGEMTAKIEELEQKHPGVDVAGPFTRGYERGREHYQQLCNKSKAA*
Ga0182033_120399491	3300016319	Soil	LRSAEQEHYTAIGKNFGADEKFYRMGFEAALHAQSRCKEYDQALAEMSARVEDLERQYPGEAVEEPFLRGYERGRDHYQALCDHSKAA
Ga0187818_100176091	3300017823	Freshwater Sediment	EHYSTLGKDFGNDEKFYRLGFESALHARTRCKEYDQVMGEMSAQIEDLERQYPGVNVAEPFTRGYERGRDYYQELCSKQKAA
Ga0187817_106946452	3300017955	Freshwater Sediment	ARTRCKEYDQTLAEMDRKIEDLERKYTGVDVAEPFRKGYERGRDHYQQLCDESKAA
Ga0187817_110211132	3300017955	Freshwater Sediment	RTRCKEYDQVMGEMSAQIEDLERQYPGVNVAEPFTRGYERGRDYYQELCSKQEAA
Ga0187805_100608631	3300018007	Freshwater Sediment	GHYSTHSRNFSNDEKFYRLGFEAALHARTRCKEYDQVLAEMDSKIEDIEREYPGMNAGEPFCKGYERGRDYYQQLCNESKAA
Ga0187875_103779252	3300018035	Peatland	RMGFESALHARTRCKEYDQVMGEMTAQIEDLESQHPGINIAEPFTRGYERGRDYYQQLCSESKAA
Ga0187859_100363301	3300018047	Peatland	FYRMGFESALHARTRCKEYDQVMGEMTAQIEDLESQHPGINVAEPFTRGYERGRDYYQQLCSESKAA
Ga0066662_123251342	3300018468	Grasslands Soil	AALHARSRCKEYDQVLGEMNATLEDVRRQYPNANMDEPFTRGYERGRDYYQGLCNQSEAA
Ga0187800_17686482	3300019278	Peatland	LRSAEEEHYSSHGRNFTNDEKFYRLGFEAALHARTRCMEYDQVLGEMDSKIEDIERENPGANAGEPFRKGYERGRDYYQQLCDESKAA
Ga0182025_11518071	3300019786	Permafrost	MGFESALHARSRCKEYDQVLGEMTVQIEELERQHLGANVGEPFRRGYERGRDYYQRLCDERKAA
Ga0193707_10643711	3300019881	Soil	ERERYSTLGKNFSEDEHFFRLGFQAALHARSRCKEYDQVLAEMSVHIEELERQYPGSEVAEIYTRGYQRGREHYEQLCRESKAA
Ga0210399_100624351	3300020581	Soil	SFSRNLSENEKFYRMGFESALHARTRCKEYDQVMGEMTAQIEELEQQYPGAEVSEAYQRGYERGRDYYQQLCNESKAA
Ga0210404_104124421	3300021088	Soil	SALHARTRCKEYDQVMGEMNARIEDLEREHPGVNVSEPFTRGYERGRDYYQQLCSQSKAA
Ga0210405_112123662	3300021171	Soil	FESALHARTRCKQYDQVMGEMNAEIEDLERQHPGADVAEPFTRGYERGRDYYQQLCSESRAA
Ga0210405_112498772	3300021171	Soil	ARTRCKEYDQVMGEMNAEIEDLERQHPGVDLAEPFTRGYERGCDYYQQLCSESKAA
Ga0210408_103148631	3300021178	Soil	SALHARTRCKEYDQTLAEMTAKIEDLERQYPGVELAEPFTRGYERGRDHYQQLCDKSRAA
Ga0210396_108448151	3300021180	Soil	ARTRCKEYDQVMGEMTAQIEELEQQYPGAEVSEAYQRGYERGRDYYQQLCNESKAA
Ga0210388_107879611	3300021181	Soil	NDEKFYRLGFECALHAQARCKEYDQVMGEMTAKVEELEAAYPGAEVAEPFTRGYERGRDYYQEMCDKQKAA
Ga0210388_117111942	3300021181	Soil	FYRLGFESALHARTRCKEYDQVMGEMNAEIEDLERQHPGVDVAQPFTRGYERGRDYYQQLCSESKAA
Ga0210385_105426631	3300021402	Soil	FGRNLSEDEKFYRLGFESALHARTRCKEYDQVLAEMTVDIEELERRYPGAQVAEPFRRGYERGRDYYQRLCGESKAA
Ga0210397_102240583	3300021403	Soil	YSTLGRNFTEDEKFYRLGFESALHARTRCKEYDQVMGEMNAEIEDLERQHPGVDIAEPFTRGYERGRDYYQQLCSESRAA
Ga0210389_100359902	3300021404	Soil	MGFESALHARTRCKEYDQVMGEMTAQIEELEQQYPGAEVSEAYQRGYERGRDYYQQLCNESKAA
Ga0210394_114247532	3300021420	Soil	GLRDAEMEHYSSFSRNLSENEKFYRMGFESALHARTRCKEYDQVMGEMTAQIEELEQQYPGAEVSEAYQRGYERGRDYYQQLCNESKAA
Ga0210384_104457171	3300021432	Soil	RLGFESALHARTRCKEYDQVLGEMDADIDELERRYPGKALAEPFRRGYERGRAYYQHLCDESKAA
Ga0210384_117213291	3300021432	Soil	YRLGFESALHARTRCKEYDQVMGEMNAEIEDLERQHPGVDIAEPFTRGYERGRDYYQQLCSESKAA
Ga0210384_118955022	3300021432	Soil	DEKFYRLGFESALHARTRCKEYDQVLGEMVAKLEDVQREYPSASVEKPFTHGYERGRNYYQRLCNQCTPASSHL
Ga0210391_104692572	3300021433	Soil	YSAGGKNFGEDEKFYRLGFESALHARTRCKEYDEVMGEMTAEIEELERQHPGVNVAEPFTRGYERGRDYYQQLCSQSEAA
Ga0210391_109075172	3300021433	Soil	GFESALHARTRCKEYDQVMGEMNAEIEDLERQHPGVDVAQPFTRGYERGRDYYQQLCSESKAA
Ga0210391_109411801	3300021433	Soil	RDAEHEHYSTLGKNFAEDEKFYRLGFESALHARTRCKEYDQVMGEMNAEIEDLEGQHPGVNVAEPFTRGYERGRDYYQQLCSESKAA
Ga0210410_113669482	3300021479	Soil	RDAEHEHYSTLGRNFTEDEKFYRLGFESALHARTRCKEYDQVMGEMNAEIEDLERQHPGVDIAEPFTRGYERGRDYYQQLCSESRAA
Ga0212123_104178741	3300022557	Iron-Sulfur Acid Spring	AKSEHYSTHGEKPGEYERYYRLGFESALHARTRCKEYDQVMGEMNAAIRDLERRNPGVDVATPFTRGYERGRDYYQQLCGKSKAA
Ga0224569_1060762	3300022732	Rhizosphere	EKFYRLGFESALHARTRCKEYDQVLGEMTTAIEDLERENPGAHVAEPFQRGYERGRDYYQRLCNESKAA
Ga0224562_10164601	3300022733	Soil	LSDDEKFYRLGFESALHARTRCKEYDQVLGEMTAAIEDLERENPGAHVAEPFQRGYERGRDYYQRLCNESKAA
Ga0224560_1024851	3300023019	Soil	LGFESALHARTRCKEYDQVLGEMTTAIEDLERENPGAHVAEPFQRGYERGRDYYQRLCNESKAA
Ga0228598_10638311	3300024227	Rhizosphere	LSDDEKFYRLGFESALHARTRCKEYDQVLGEMTTAIEDLERENPGAHVAEPFQRGYERGRDYYQRLCNESKAA
Ga0224564_10333732	3300024271	Soil	GKNFKEDEKFYRVGFESALHARTRCKEYDQVMGEMTAQIEDLERQHPGVDVAEPFTRGYERGRDYYQQLCSESKAA
Ga0224564_10952282	3300024271	Soil	HARTRCREYDEVMGEMTSRIEDIEKQYPGINAAEAFEKGYKRGRDYYQQLCNESKAA
Ga0207665_104955343	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	AERERYSTLGKNFTEDEQFFRLGFQAALHARSRCKEYDQVLAEMSVQIEELEHQYPGSEVAEVYTRGYQRGREHYEQLCRESKAA
Ga0209523_10219981	3300027548	Forest Soil	YRLSFEAALHARTRCKEYDQTLGEMDAKIEELEQQYPGRNVTEPFSRGYERGRDYYQHLCDESRAA
Ga0208042_11886771	3300027568	Peatlands Soil	ALHARTRCKEYDQVLGEMTAQIEELERQNPGAEVAEAFQRGYERGRDYYQQLCNESKAA
Ga0209333_11089393	3300027676	Forest Soil	EQEHYANQGRKFGNDEKFYRLGFESALHARTRCKEYDQTLAEMSVEIEALECRYPGADLAEPFRKGYERGRDYYQQLCKESKAA
Ga0209328_101944222	3300027727	Forest Soil	VQVLRDAEKEHYSALGKNFGKDEKFYRLGFESALHARTRCKEYDQVYGEMTAQIEDLERQYPGVELAEPFTRGYERGRDYYQQLCNKPRAA
Ga0209908_100382132	3300027745	Thawing Permafrost	MGFESALHARTRCKEYDQVMGELTSQLEDIEKQYPGVNAAEVFQKGYERGRDYYQQLCNESKAA
Ga0209655_100676731	3300027767	Bog Forest Soil	RHAEDEHYSAGGKNFGEDEKFYRLGFESALHARTRCKEYDEVMGEMTAEIEELERQHPGGNVAEPFTRGYERGRDYYQQLCSESEAA
Ga0209772_102023331	3300027768	Bog Forest Soil	RCKEYDQVLGEMTAKIEELELQNPGAEVAEAFQRGYERGRDYYQQLCNESKAA
Ga0209060_101934032	3300027826	Surface Soil	RLGFESALHARTRCKEYDQVMGEMNAAIRDLERGNPGVDVATPFTRGYERGRDYYQELCNKSKAA
Ga0209274_107297481	3300027853	Soil	GRNFTEDEKFYRLGFESALHARTRCKEYDQVMGEMNAEIEELERQHPGVDVAEPFTRGYERGRDYYQQLCSESRAA
Ga0209579_100257991	3300027869	Surface Soil	LTEDEKFYRLGFESALHARSRCKEYDQVLSEMTARIEDLEKQYPHAAIEGPFRRGYERGRDYYQQLCDEKKAA
Ga0209579_102352251	3300027869	Surface Soil	KPGDNEKYYRLGFESALHARTRCKEYDQVMGEMNAAIRDLEQGNPGVDVATPFTRGYERGRDYYQELCNKSKAA
Ga0209579_106643411	3300027869	Surface Soil	FTEDEKFYRLGFESALHARTRCKEYDQVMGEMDAEIEDLERQHPGVDVAEPFTRGYERGRDYYQQLCSESRAA
Ga0209169_100433421	3300027879	Soil	SALHARTRCKEYDQVLAEMDAKIEEVELQYPGKQAAEPFRKGYERGRDYYQRLCEEAKVA
Ga0209169_107320241	3300027879	Soil	DEKFYRMGFESALHARTRCKEYDQVMGEMTSQIEDIEKQYPGINAAEAFEKGYKRGRDYYQQICNESKAA
Ga0209275_100058196	3300027884	Soil	SQHGKNFGNDEEFYRRGFEFALDARTRRKEYDQVVPEMKVKIQELERQYPGIEVAEPFRRGFERGRNHHQQLWSESKAA
Ga0209380_101326642	3300027889	Soil	NEKFYRMGFESALHARTRCKEYDQVMGEMTAQIEELEQQYPGAEVSEAYQRGYERGRDYYQQLCNESKAA
Ga0209624_102026341	3300027895	Forest Soil	YRMGFESALHARSRCKEYDQVMGEMTAQIEDLERQYPGVKVAEPFRRGYERGRDYYQQLCDERRAA
Ga0302155_100260311	3300028874	Bog	FEAALHARMRCKEYDQVLGEMNGKIEDLEREYPEADVAEPFRRGYERGRDYYQRLCDESKAA
Ga0308309_100178251	3300028906	Soil	YSNLGRNFTEDEKFYRLGFESALHARTRCKEYDQVMGEMNAGIEDLERQHPGVDVAEPFTRGYERGRDYYQQLCSESRAA
Ga0311327_100938234	3300029883	Bog	EHYSKFGKNLSEDEKFYRLGFEAALHARMRCKEYDQVLGEMNGKIEDLEREYPEADVAEPFRRGYERGRDYYQRLCDESKAA
Ga0311339_105676131	3300029999	Palsa	RTRCKEYDQVLAEMTVDIEELERRYPGAQVAEPFRRGYERGRDYYQRLCGESKAA
Ga0311354_117361241	3300030618	Palsa	STFGRNLSDDEKFYRLGFESALHARSRCQEYDQVAGELAAKIEELEEQYPGAEVAEPFQRGYERGRDYYQRLCDESKAA
Ga0265765_10705551	3300030879	Soil	KFYRMGFEAALHARTRCKEYDQVMGEMTAKIEDLERRYPGAKLDEPFRSGYERGRDYYQQLCDERKAA
Ga0302324_1009316861	3300031236	Palsa	AENEHYSSRGRNFSTDEQFYRLGFESALHARTRCKEYDQVLGEMSAQIEELERQHPDSEVAEPFTRGYERGRDHYQQICDKARAA
Ga0310686_1059893301	3300031708	Soil	EHYSTFARNLSDDEKFYRLGFESALHARTRCKEYDQVLGEMTAAIEDLERENPGAHVAEPFQRGYERGRDYYQRLCNESKAA
Ga0310686_1067211891	3300031708	Soil	RLGFESALHARTRCKEYDQVMGEMTAQIEDLERQYPGVDVAEPFTRGYERGRDYYQQLCSESKAA
Ga0310686_1104667111	3300031708	Soil	EHYSTFARNLSDDEKFYRLGFESALHARTRCKEYDQVLGEMTTAIEDLERENPGAHVAEPFQRGYERGRDYYQRLCNESKAA
Ga0307476_100746241	3300031715	Hardwood Forest Soil	FYRLGFESALHARTRCKEYDQVMGEMTAQIEDLERQYPGVNVAEPFTRGYERGRDYYQELCSKQNAA
Ga0307474_108998351	3300031718	Hardwood Forest Soil	NLTEDEKFYRLGFESALHARTRCKEYDQVLGEMTAKIEELELQNPGAEVAEAFQRGYERGREYYQQLCNESTAA
Ga0307473_112663441	3300031820	Hardwood Forest Soil	LGFEAALHARMRCQEYDQVVAEMSVQIEELERQYPDTEVAEAFTRGYQRGREHYQQLCSESRAA
Ga0306926_110561092	3300031954	Soil	RSAEQEHYTAIGKNFGADEKFYRMGFEAALHAQSRCKEYDQALAEMSARVEDLERQYPGEAVEEPFLRGYERGRDHYQALCDHSKAA
Ga0307479_106108542	3300031962	Hardwood Forest Soil	IFYRLGFEAALHARTRCKEYDQTLGEMDAKIEELEQQYPGRDVADPFSRGYERGRDYYQHLCDESRAA
Ga0311301_102901213	3300032160	Peatlands Soil	ESALHARTRCKEYDQVMGEMSAQIEDLERQYPGVNVAEPFTRGYERGRDYYQELCSRQKA
Ga0307472_1012837402	3300032205	Hardwood Forest Soil	YSKLGKNFTKDEQFFRLGFQAALHARSRCKEYDQVLAEMSAHIEELEHQYPGSEVAEVYTRGYQRGREHYEQLCRESKAA
Ga0348332_135474921	3300032515	Plant Litter	ARTRCKEYDQVLGEMTTAIEDLERENPGAHVAEPFQRGYERGRDYYQRLCNESKAA
Ga0335081_126422371	3300032892	Soil	FEAALHARTRCKEYDQTLGEMDAKIEDLEKQYPGRNVAEPFSRGYERGRDYYQQLCDESRAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100644

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences