Metagenome Family F100689

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100689
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	51 residues
Representative Sequence	MLARYYVTGWSGRFGMWIAESLEAKSKAVAKERFMTKYPTLKTIKAYKLRGEA
Number of Associated Samples	74
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	84.62 %
% of genes near scaffold ends (potentially truncated)	4.90 %
% of genes from short scaffolds (< 2000 bps)	12.75 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.69

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (80.392 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (36.274 % of family members)
Environment Ontology (ENVO)	Unclassified (67.647 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (76.471 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.58% β-sheet: 32.10% Coil/Unstructured: 54.32%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.69
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.69
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF07728	AAA_5	35.29
PF00004	AAA	1.96
PF13392	HNH_3	1.96
PF11753	DUF3310	0.98
PF13432	TPR_16	0.98
PF05496	RuvB_N	0.98
PF03237	Terminase_6N	0.98
PF09374	PG_binding_3	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2255	Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB	Replication, recombination and repair [L]	0.98

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.39 %
All Organisms	root	All Organisms	19.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.39 %
Viruses	superkingdom	All Organisms → Viruses	19.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.39 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	3.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.39 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	3.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.39 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	3.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.39 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.39 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	3.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.39 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005527\|Ga0068876_10046176	All Organisms → Viruses → Predicted Viral	2666	Open in IMG/M
3300005527\|Ga0068876_10063194	All Organisms → Viruses → Predicted Viral	2240	Open in IMG/M
3300006802\|Ga0070749_10777678	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	509	Open in IMG/M
3300008107\|Ga0114340_1047497	All Organisms → Viruses → Predicted Viral	1894	Open in IMG/M
3300008107\|Ga0114340_1071029	All Organisms → Viruses → Predicted Viral	3294	Open in IMG/M
3300009068\|Ga0114973_10028502	All Organisms → Viruses → Predicted Viral	3394	Open in IMG/M
3300009152\|Ga0114980_10000962	Not Available	20527	Open in IMG/M
3300010885\|Ga0133913_11523644	All Organisms → Viruses → Predicted Viral	1692	Open in IMG/M
3300011114\|Ga0151515_10797	Not Available	13073	Open in IMG/M
3300014502\|Ga0182021_10078829	All Organisms → Viruses → Predicted Viral	3824	Open in IMG/M
3300015050\|Ga0181338_1007765	All Organisms → Viruses → Predicted Viral	1794	Open in IMG/M
3300015050\|Ga0181338_1049208	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	617	Open in IMG/M
3300017707\|Ga0181363_1060124	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	668	Open in IMG/M
3300017777\|Ga0181357_1085053	All Organisms → Viruses → Predicted Viral	1209	Open in IMG/M
3300017785\|Ga0181355_1057021	All Organisms → Viruses → Predicted Viral	1654	Open in IMG/M
3300017785\|Ga0181355_1296760	Not Available	608	Open in IMG/M
3300019784\|Ga0181359_1009604	All Organisms → Viruses → Predicted Viral	3397	Open in IMG/M
3300019784\|Ga0181359_1023360	All Organisms → Viruses → Predicted Viral	2355	Open in IMG/M
3300019784\|Ga0181359_1057960	All Organisms → Viruses → Predicted Viral	1486	Open in IMG/M
3300019784\|Ga0181359_1163293	Not Available	752	Open in IMG/M
3300027759\|Ga0209296_1016576	All Organisms → Viruses → Predicted Viral	4279	Open in IMG/M
3300027763\|Ga0209088_10000145	Not Available	52388	Open in IMG/M
3300027917\|Ga0209536_100241943	All Organisms → Viruses → Predicted Viral	2261	Open in IMG/M
3300028025\|Ga0247723_1003265	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	8197	Open in IMG/M
3300031758\|Ga0315907_10194463	All Organisms → Viruses → Predicted Viral	1702	Open in IMG/M
3300032092\|Ga0315905_10919142	Not Available	746	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	95.10%
Terrestrial	Environmental → Terrestrial	4.90%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	88.24%
Marine	Environmental → Aquatic → Marine	6.86%
Soil	Environmental → Terrestrial → Soil	2.94%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.96%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	43.14%
Lentic	Environmental → Aquatic → Freshwater → Lentic	39.22%
Coastal	Environmental → Aquatic → Marine → Coastal	3.92%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	2.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.96%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.96%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.96%
Creek	Environmental → Aquatic → Freshwater → Creek	0.98%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.98%
Clay	Environmental → Terrestrial → Soil → Clay	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	39.22%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	38.24%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	3.92%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	3.92%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.96%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.96%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.96%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.98%
Unclassified	Environmental → Aquatic → Freshwater → Creek → Unclassified	0.98%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.98%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	36.27%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	24.51%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	4.90%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	3.92%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	2.94%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	2.94%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	2.94%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	2.94%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	1.96%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.96%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	1.96%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	1.96%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.98%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.98%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.98%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	0.98%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.98%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.98%
Aquatic	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Aquatic	0.98%
Freshwater	Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater	0.98%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	0.98%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.98%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003490	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN	Environmental	Open in IMG/M
3300004125	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (version 2)	Environmental	Open in IMG/M
3300004461	Marine viral communities from Newfoundland, Canada BC-2	Environmental	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental	Open in IMG/M
3300005528	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300006115	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jul09	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental	Open in IMG/M
3300007622	Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02	Environmental	Open in IMG/M
3300008107	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA	Environmental	Open in IMG/M
3300008108	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA	Environmental	Open in IMG/M
3300008113	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA	Environmental	Open in IMG/M
3300008263	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-53-LTR	Environmental	Open in IMG/M
3300008448	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs	Environmental	Open in IMG/M
3300008450	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs	Environmental	Open in IMG/M
3300009026	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575	Environmental	Open in IMG/M
3300009037	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009068	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG	Environmental	Open in IMG/M
3300009151	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG	Environmental	Open in IMG/M
3300009152	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG	Environmental	Open in IMG/M
3300009158	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG	Environmental	Open in IMG/M
3300009159	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG	Environmental	Open in IMG/M
3300009160	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG	Environmental	Open in IMG/M
3300009161	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG	Environmental	Open in IMG/M
3300009164	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG	Environmental	Open in IMG/M
3300009180	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG	Environmental	Open in IMG/M
3300009183	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG	Environmental	Open in IMG/M
3300009184	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG	Environmental	Open in IMG/M
3300010160	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG	Environmental	Open in IMG/M
3300010885	northern Canada Lakes Co-assembly	Environmental	Open in IMG/M
3300011114	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb	Environmental	Open in IMG/M
3300013286	Freshwater microbial communities from Elizabeth Lake, Yosemite National Park, California, USA - 13020-23Y	Environmental	Open in IMG/M
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014811	Aquatic viral communities from ballast water - Michigan State University - AB_ballast water	Environmental	Open in IMG/M
3300015050	Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017700	Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.D.D	Environmental	Open in IMG/M
3300017707	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.N	Environmental	Open in IMG/M
3300017716	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D	Environmental	Open in IMG/M
3300017722	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.N	Environmental	Open in IMG/M
3300017723	Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.N	Environmental	Open in IMG/M
3300017736	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N	Environmental	Open in IMG/M
3300017747	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N	Environmental	Open in IMG/M
3300017754	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D	Environmental	Open in IMG/M
3300017774	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017777	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N	Environmental	Open in IMG/M
3300017778	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017784	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N	Environmental	Open in IMG/M
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental	Open in IMG/M
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental	Open in IMG/M
3300020048	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915	Environmental	Open in IMG/M
3300021956	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG	Environmental	Open in IMG/M
3300022190	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N	Environmental	Open in IMG/M
3300025635	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300027733	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027736	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027759	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027763	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027785	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)	Environmental	Open in IMG/M
3300027808	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300027917	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)	Environmental	Open in IMG/M
3300028025	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC	Environmental	Open in IMG/M
3300031669	Soil microbial communities from Risofladan, Vaasa, Finland - TR-1	Environmental	Open in IMG/M
3300031707	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20	Environmental	Open in IMG/M
3300031758	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123	Environmental	Open in IMG/M
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental	Open in IMG/M
3300032053	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16	Environmental	Open in IMG/M
3300032092	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121	Environmental	Open in IMG/M
3300034020	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055	Environmental	Open in IMG/M
3300034062	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045	Environmental	Open in IMG/M
3300034093	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25926J51410_10646711	3300003490	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEAKSKVAARERFTTKYPTLKTIKAYKLRGGN*
Ga0066182_101444491	3300004125	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEARNMTVAKERFTTKYPTLKTIKAYKLRGEA*
Ga0066223_10843132	3300004461	Marine	MLARYYVTGWSNRFSNWVAEHIESKNMVMAKERFTTKYPTLKRIRAYKLRGEN*
Ga0069718_158621672	3300004481	Sediment	MLAKYYVTGWSGRFSMWIAESLEAKSKAVAKERFLSKYPTLKKIKMYKLRGEA*
Ga0068876_100461765	3300005527	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEAKSKAVARERFMTKYPTLKTIKAYKLRGEA*
Ga0068876_100631942	3300005527	Freshwater Lake	MLARYYVTGWSGRFSMWIAESLEAKSKAVAKERFLSKYPTLKKIKLYKLRGEA*
Ga0068872_104626851	3300005528	Freshwater Lake	MLARYYVTGWSGRFSMWVAESLEAKSKAVAKERFLSKYPTLKKIKLYKLRGEA*
Ga0049081_101903802	3300005581	Freshwater Lentic	MLARYYVTGWSGRFGMWIAESLEAKSKAVAKERFLSKYPTLKKIKLYKLRGEA*
Ga0007816_10746951	3300006115	Freshwater	GMWIAETYECASMTKAKERFTTQYPTLKTVKAYVLRRD*
Ga0070749_107776781	3300006802	Aqueous	MLARYYVTGWSGRFGMWIAEHLEAKSKAVAKERFLSKYPTLKKIKLYKLRGEA*
Ga0075464_105458823	3300006805	Aqueous	MLARYYVTGWSGRFGMWIAESLEARSKAVAKERFLSKYPTLKKIKLYKLRGEM*
Ga0102863_12556021	3300007622	Estuarine	MLARYYVTGWSGRFGMWIAESLEAKSKVAAKERFTTKYPTLKTIKAYKLRGEA*
Ga0114340_10474978	3300008107	Freshwater, Plankton	MLARYYVTGWSGRFGMWIAESLEARNMTVAKERFTTKYPTLKTIKAYKLR
Ga0114340_10710299	3300008107	Freshwater, Plankton	MLARYYVTGWSGRFGMWIAESLEARNMTVAKERFTTKYPTLKTIKAYKLRGRRKGSRPSTRH*
Ga0114341_101115422	3300008108	Freshwater, Plankton	MLARYYVTGWSGRFGMWIAESLEAKSKAVAKERFMTKYPTLKTIKAYKLRGEA*
Ga0114346_10830601	3300008113	Freshwater, Plankton	MLARYYVTGWSGRFGMWIAESLEARNMTVAKERFTTKYPTLKTIK
Ga0114349_12786302	3300008263	Freshwater, Plankton	MLAKYYVTGWSGRFGMWIAESLEVKSKAVAKERFMNKYPTLKTIKAYKLRGEA*
Ga0114876_11317842	3300008448	Freshwater Lake	GRFGMWIAESLEARNMTVAKERFTTKYPTLKTIKAYKLRGEA*
Ga0114876_11942263	3300008448	Freshwater Lake	FGMWIAESLEARNMTVAKERFTTKYPTLKTIKAYKLRGEA*
Ga0114880_11574702	3300008450	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEAKSKAVARERFMNKYPTLKTIKAYKLRGEA*
Ga0102829_10677462	3300009026	Estuarine	MLARYYVTGWSGRYGMWIAESLEAKSKVAARERFTTKYPTLKTIKAYKLRGEA*
Ga0105093_108046293	3300009037	Freshwater Sediment	MLAKYYVTGWSGRFGMWIAESLEAKSKAVAKERFLSKYPTLKKIKLY
Ga0114973_1002850210	3300009068	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEAKSKVAARERFTTKYPTLKTIKAYKLRGEA*
Ga0114973_101712883	3300009068	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEARSKAVAKERFMSKYPTLKKIKMYKLRGEN*
Ga0114973_106908951	3300009068	Freshwater Lake	MLARYYVTGWSNRFSNWIAEHIESKNMVMAKERFTTKYPTLKRIKAYKLRGEN*
Ga0114962_105694742	3300009151	Freshwater Lake	MHRFYVTGFSNRFGMWIAETYECKSRAKARERFVAKYPTLKGIKAYALRAETP*
Ga0114980_1000096229	3300009152	Freshwater Lake	MLARYYVTGWSNRRGSWIAEVVEAQSKAVAKLRFGLTYPTLKTVKTYRLKGGG*
Ga0114977_102483872	3300009158	Freshwater Lake	MLARYYVTGWSGGFGRWIAESLEAKSMTVAKQRFTTKYPTLKTIKAYKLRGEA*
Ga0114978_106511122	3300009159	Freshwater Lake	MLARYYVTGWSGRFGMWIAENLEAKSKAVARERFTTKYPTLKTIKAYKLRGEA*
Ga0114981_104691531	3300009160	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEAKSKVAARERFMTKYPTLKTIKAYKLRGEN*
Ga0114966_102852012	3300009161	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEAKSKAVARERFTTKYPTLKTIKAYKLRSEA*
Ga0114966_102925521	3300009161	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEAKSKVAARERFMTKYPTLKTIKAYKLRGEA*
Ga0114975_107447742	3300009164	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEARNMTVAKERFTTKYPTLKTIKAYKLRGEM*
Ga0114979_100898784	3300009180	Freshwater Lake	MLARYYVTGWSGRYGMWIAENLEAKSKAVARERFTTKYPTLKTIKAYKLRGEA*
Ga0114979_102109231	3300009180	Freshwater Lake	MLARYYVTGFSNRFGMWIAESLEARSKAVAKERFTTKYPTLKTIKAYKLRGEN*
Ga0114974_103103142	3300009183	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEARNMAVAKERFTTKYPTLKTIKAYKLRGEA*
Ga0114976_106495853	3300009184	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEARNMTVAKERFTTKYPTLKTIKAYKLRG
Ga0114967_104604922	3300010160	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEARSKAVAKERFVSKYPTLKKIKMYKLRGEN*
Ga0133913_109982015	3300010885	Freshwater Lake	MLARYYVTGWSNRFSNWVAEHIESKNMVMAKERFTTKYPTLKRIKAYKLRGEA*
Ga0133913_115236445	3300010885	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEAKSMTVAKERFTTKYPTLRTIKAYKLKGEA*
Ga0133913_124314742	3300010885	Freshwater Lake	TGFSNRFGMWIAESLEARSKAVAKERFTTKYPTLKTIKAYKLRGEN*
Ga0133913_128416492	3300010885	Freshwater Lake	MLARYYVTGFSNRFGMWIAESLEARSKAVAKERFITKYPTLKTIKAYKLRGEN*
Ga0151515_107973	3300011114	Freshwater	MLARYYVTGWSGRFSMWIAESLEAKSKVAARERFTTKYPTLKTIKAYKLRGEA*
Ga0136641_10163462	3300013286	Freshwater	MLARYYVTGWSNRFGNWVAEHLEAKNMVVAKERFTTKYPTLKRIKAYKLRREN*
Ga0177922_103771294	3300013372	Freshwater	MLARYYVTGWSGRFSMWVAESLEAKSKAVAKERFTTKYPTLKTIKAYKLRGEA*
Ga0177922_110336742	3300013372	Freshwater	YYVTGWSGRFGMWIAESLEARSKAVAKERFVSKYPTLKKIKMYKLRGEN*
Ga0182021_100788293	3300014502	Fen	MLAKYYVTGWSNRYGNWVAEHLEARNMQVAKERFATKYPTLKKLKAYQLRAPAEMME*
Ga0182021_122696261	3300014502	Fen	MLAKYYVTGWSGRFGMWIAESLEAKSMTVAKERFTTKYPTLKTIRAYKLRGEM*
Ga0119960_10433923	3300014811	Aquatic	MLARYYVTGWSGRFSMWIAESLEAKNKAIAKERFLSKYPTLKKIKMYKLRGEN*
Ga0181338_10077653	3300015050	Freshwater Lake	MLARYYVTGWSGGFGRWIAESLEAKSMTVAKQRFATKYPTLKTIKAYKLRGEA*
Ga0181338_10474353	3300015050	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEARNMTVAKERFTTKYPTLKTIKAYKLRGE
Ga0181338_10492081	3300015050	Freshwater Lake	SMWVAESLEAKSKAVAKERFTTKYPTLKTIKAYKLRGEA*
Ga0181339_10103641	3300017700	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEAKSKAVAREKFTTKYPTLKTIKAYKLRGEA
Ga0181363_10601243	3300017707	Freshwater Lake	GMWIAESLEARNMTVAKERFTTKYPTLKTIKAYKLRGEA
Ga0181350_10496051	3300017716	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEAKSKVAARERFTTKYPTLKTIKAYKLRG
Ga0181350_10505851	3300017716	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEAKSKVAARERFTTKYPTLKTIKTYKLRGEE
Ga0181350_11516763	3300017716	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEAKSKVAARERFTTKYPTLKT
Ga0181347_10804661	3300017722	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEAKSKVAARERFTTKYPTLKTIKTYKLRG
Ga0181362_11052051	3300017723	Freshwater Lake	MLARYYVTGWSGRFGMWIAESPEAKSKAVARERFTTKYPTLKTIKAYKLRGEN
Ga0181362_11148531	3300017723	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEAKSKVAARERFTTKYPTLKTIKAYKLRGGNYSPS
Ga0181365_10081141	3300017736	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEAKSKVAARERFTTKDPTLKTIKTYKLRGEA
Ga0181352_11228463	3300017747	Freshwater Lake	MLARYYVTGWSGRFSMWVAESLEAKSKAVAKERFLSKYPTLKKIKMYKLRGEA
Ga0181344_10876811	3300017754	Freshwater Lake	KLARYYVTGWSGRFGMWIAESLEARSKAVAKERFVSKYPTLKTIKAYKLRGEA
Ga0181344_11002111	3300017754	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEARNMTVAKGRFTTKYPTLKTIKAYKLRGEA
Ga0181358_11910153	3300017774	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEAKSKVAARERFTTKYPTLKTIKAYK
Ga0181357_10850534	3300017777	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEAKSKVAARERFTTKYPTLKTIK
Ga0181357_12831213	3300017777	Freshwater Lake	GFGRWIAESLEAKSMTVAKQRFATKYPTLKTIKAYKLRGEA
Ga0181349_12514761	3300017778	Freshwater Lake	YVTGWSGGFGRWIAESLEAKSMTVAKQRFATKYPTLKTIKAYKLRGEA
Ga0181349_12934531	3300017778	Freshwater Lake	MLARHYVTGWSGRFGMWIAESLEARNMTVAKERFTTKYPTLKTIKAYKLRGF
Ga0181348_11376494	3300017784	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEAKSKVAARERFTTKYPTLKTIKAY
Ga0181355_10570216	3300017785	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEAKSKVAARERFTTKYPTLKTTKADKLRGEA
Ga0181355_12967602	3300017785	Freshwater Lake	MLARYYVTGWSGGFGRWIAESLEAKSMTVAKQRFATKYPTLKTIKAYKLRSEA
Ga0181355_13854583	3300017785	Freshwater Lake	MLARYYVTGWSGGFGRWIAESLEAKSMTVAKQRFATKYPTLKTIK
Ga0181359_10096044	3300019784	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEAKSKVAARERFTTKYPTLKTIKAYKLRGGN
Ga0181359_10233601	3300019784	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEARNMTVAKERFTTKYPTLKTIKAYKLRGEA
Ga0181359_10579605	3300019784	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEAKSKVAARERFTTKYPTLKTIKAYKLRGEA
Ga0181359_11632931	3300019784	Freshwater Lake	MLARYYVTGWSGGFGRWIAESLEAKSMTVAKQRFATKYPTLKTIKAYKLRGEA
Ga0207193_11932102	3300020048	Freshwater Lake Sediment	MLARYYVTGWSGRFGMWIAESLEAKSKAVAKERFVSKYPTLKKIKMYKLRGEN
Ga0213922_10698732	3300021956	Freshwater	MLAKYYVTGWSGRFGMWIAEHLEAKSKAAARERFITKYPTLKTIKAYKLRSEA
Ga0181354_10640553	3300022190	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEAKSKVAARERFTTKYPTLKTIKAYKLRGEN
Ga0181354_10771601	3300022190	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEAKSKVAARERFTTKYPTLKTIKTYKLRGEA
Ga0208147_10661072	3300025635	Aqueous	MLARYYVTGWSGRFGDWVAEAIEAKSKVVAKERFLAKYPTLKRIKTYKLRGEN
Ga0209297_12560152	3300027733	Freshwater Lake	MLARYYVTGWSGGFGRWIAESLEAKSMTVAKQRFTTKYPTLKTIKAYKLRGEA
Ga0209190_10740033	3300027736	Freshwater Lake	MLARYYVTGWSNRFSNWIAEHIESKNMVMAKERFTTKYPTLKRIKAYKLRGEN
Ga0209296_10165764	3300027759	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEARNMTVAKERFTTKYPTLKTIKAYKLRGEM
Ga0209296_13107121	3300027759	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEARNMAVAKERFTTKYPTLKTIKAYKLRGEA
Ga0209088_1000014562	3300027763	Freshwater Lake	MLARYYVTGWSNRRGSWIAEVVEAQSKAVAKLRFGLTYPTLKTVKTYRLKGGG
Ga0209246_103558881	3300027785	Freshwater Lake	MLARYYVTGWSGRFGMWIAESLEAKSKVAARERFTTKYPTLKTIKAYKLRGE
Ga0209354_102774332	3300027808	Freshwater Lake	MLARYYVTGWSGGFGRWIAESLEAKSMTVAKQRFATKYPTLKTIKAYKLRGEN
Ga0209253_108634172	3300027900	Freshwater Lake Sediment	LARYYVTGWSGRFGMWIAESLEARNMTVAKERFMTKYPTLKTIKAYKLRGEA
Ga0209536_1002419437	3300027917	Marine Sediment	MLAKYYVTGWSGRFGMWIAEHLEAKSKAAARERFITKYPTLKTIKAYKLRGEA
Ga0247723_100326510	3300028025	Deep Subsurface Sediment	MWIAESLEAKSKAVARERFTTKYPTLKTIKAYKLRGEA
Ga0247723_10353761	3300028025	Deep Subsurface Sediment	RYYVTGWSGRFGMWIAESLEAKSKAVAKERFLSKYPTLKKIKLYKLRGEA
Ga0307375_108134461	3300031669	Soil	WVAESLEAKSKAVAKERFLSKYPTLKKIKLYKLRGEA
Ga0315291_109273571	3300031707	Sediment	MLARYYVTGWSGRYGMWIAESLEAKSKVAARERFTTKYPTLKTIKAYKLRGEA
Ga0315907_101944636	3300031758	Freshwater	MLARYYVTGWSGRFSMWIAESLEAKSKAVARERFMTKYPTLKTIKAYKLRGEA
Ga0315274_116346471	3300031999	Sediment	MLARYYVTGWSGRLGMWIAESLEAKSKVVAKERFTTKYPTLKKIKTYKLRGEN
Ga0315284_124365601	3300032053	Sediment	MLARYYVTGFSNRFGMWIAESLEARSKAVAKERFTTKYPTLKTIKAYKLRGEN
Ga0315905_109191421	3300032092	Freshwater	WSGGFGRWIAESLEAKSMTVAKQRFATKYPTLKTIKAYKLRGEA
Ga0335002_0516204_524_634	3300034020	Freshwater	IAESLEAKSKAVARERFMTKYPTLKTIKAYKLRGEA
Ga0334995_0332263_724_885	3300034062	Freshwater	MLARYYVTGWSGRFGMWVAESLEAKSKAVAKERFLSKYPTLKKIKLYKLRGEA
Ga0335012_0050749_798_971	3300034093	Freshwater	MLCNYLVTGWSSRFGMWHTESIEASSMEVAKERFVSLRPSLKHIKAYALRGGRDLNA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F100689

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences