NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F100840

Metagenome / Metatranscriptome Family F100840

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F100840
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 43 residues
Representative Sequence AGDIAGLLANAYEARRLSPPRWVQDLLRHYRVRRGKAASEVA
Number of Associated Samples 81
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 91.18 %
Associated GOLD sequencing projects 71
AlphaFold2 3D model prediction Yes
3D model pTM-score0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (89.216 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(33.333 % of family members)
Environment Ontology (ENVO) Unclassified
(70.588 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(73.529 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 48.57%    β-sheet: 0.00%    Coil/Unstructured: 51.43%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.49
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF04055Radical_SAM 15.69
PF13520AA_permease_2 2.94
PF00072Response_reg 2.94



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms89.22 %
UnclassifiedrootN/A10.78 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002561|JGI25384J37096_10021579All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes2510Open in IMG/M
3300002562|JGI25382J37095_10130605All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes844Open in IMG/M
3300002911|JGI25390J43892_10033365All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium1241Open in IMG/M
3300002916|JGI25389J43894_1108821Not Available502Open in IMG/M
3300005166|Ga0066674_10168615All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1037Open in IMG/M
3300005171|Ga0066677_10258838All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes989Open in IMG/M
3300005178|Ga0066688_10162136All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium1405Open in IMG/M
3300005178|Ga0066688_10861359All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes562Open in IMG/M
3300005179|Ga0066684_10084188All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1914Open in IMG/M
3300005179|Ga0066684_10170113All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1394Open in IMG/M
3300005186|Ga0066676_10051283All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium2346Open in IMG/M
3300005447|Ga0066689_10795555All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes588Open in IMG/M
3300005451|Ga0066681_10833333All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes555Open in IMG/M
3300005540|Ga0066697_10477935All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes711Open in IMG/M
3300005552|Ga0066701_10028461All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes2878Open in IMG/M
3300005553|Ga0066695_10092612All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1847Open in IMG/M
3300005553|Ga0066695_10829738Not Available531Open in IMG/M
3300005556|Ga0066707_10205388All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium1272Open in IMG/M
3300005558|Ga0066698_10492867All Organisms → cellular organisms → Bacteria833Open in IMG/M
3300005560|Ga0066670_10663097All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes633Open in IMG/M
3300005561|Ga0066699_10247687All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1257Open in IMG/M
3300005566|Ga0066693_10279898All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium664Open in IMG/M
3300005576|Ga0066708_10543636All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes748Open in IMG/M
3300005587|Ga0066654_10741671All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium553Open in IMG/M
3300006034|Ga0066656_10958462Not Available548Open in IMG/M
3300006034|Ga0066656_11105409All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium510Open in IMG/M
3300006794|Ga0066658_10108339All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1331Open in IMG/M
3300006797|Ga0066659_10106405All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1919Open in IMG/M
3300007258|Ga0099793_10476510All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium619Open in IMG/M
3300007265|Ga0099794_10316003All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes810Open in IMG/M
3300009012|Ga0066710_102756338All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes698Open in IMG/M
3300009012|Ga0066710_103462198All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium598Open in IMG/M
3300009012|Ga0066710_104886626All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium501Open in IMG/M
3300009088|Ga0099830_10504060All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes988Open in IMG/M
3300009089|Ga0099828_10281530All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium1494Open in IMG/M
3300009089|Ga0099828_10552773All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1037Open in IMG/M
3300009137|Ga0066709_100287808All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes2224Open in IMG/M
3300009137|Ga0066709_100386446All Organisms → cellular organisms → Bacteria1937Open in IMG/M
3300009147|Ga0114129_12438177All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium626Open in IMG/M
3300010304|Ga0134088_10273457All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium814Open in IMG/M
3300010304|Ga0134088_10488928Not Available606Open in IMG/M
3300010320|Ga0134109_10064817All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1229Open in IMG/M
3300010322|Ga0134084_10060266All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1138Open in IMG/M
3300010323|Ga0134086_10432958Not Available534Open in IMG/M
3300010337|Ga0134062_10129246All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1107Open in IMG/M
3300010371|Ga0134125_10444011All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1438Open in IMG/M
3300011271|Ga0137393_10796930All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes808Open in IMG/M
3300012198|Ga0137364_11082165Not Available604Open in IMG/M
3300012198|Ga0137364_11097524All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium599Open in IMG/M
3300012199|Ga0137383_10644566All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes774Open in IMG/M
3300012200|Ga0137382_10893406All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium640Open in IMG/M
3300012202|Ga0137363_11483906All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium569Open in IMG/M
3300012205|Ga0137362_11084663All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium681Open in IMG/M
3300012208|Ga0137376_10862668All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes778Open in IMG/M
3300012210|Ga0137378_10039866All Organisms → cellular organisms → Bacteria4197Open in IMG/M
3300012211|Ga0137377_10217742All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1834Open in IMG/M
3300012211|Ga0137377_11056909All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes742Open in IMG/M
3300012211|Ga0137377_11179469All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium696Open in IMG/M
3300012349|Ga0137387_10334836All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1095Open in IMG/M
3300012349|Ga0137387_11308728All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium507Open in IMG/M
3300012351|Ga0137386_11269215All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium512Open in IMG/M
3300012356|Ga0137371_10484828All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes955Open in IMG/M
3300012385|Ga0134023_1110611All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium527Open in IMG/M
3300012391|Ga0134035_1284683Not Available502Open in IMG/M
3300012409|Ga0134045_1110788All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium660Open in IMG/M
3300012975|Ga0134110_10038140All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1888Open in IMG/M
3300012975|Ga0134110_10340807All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium654Open in IMG/M
3300012975|Ga0134110_10389374All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes617Open in IMG/M
3300014150|Ga0134081_10311705All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes568Open in IMG/M
3300014150|Ga0134081_10426386All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium502Open in IMG/M
3300014154|Ga0134075_10207892All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes842Open in IMG/M
3300014166|Ga0134079_10193379All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes849Open in IMG/M
3300015053|Ga0137405_1186598All Organisms → cellular organisms → Bacteria2124Open in IMG/M
3300015054|Ga0137420_1499230All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes2211Open in IMG/M
3300018431|Ga0066655_10646911All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes715Open in IMG/M
3300018431|Ga0066655_10944752Not Available592Open in IMG/M
3300018431|Ga0066655_11152067Not Available546Open in IMG/M
3300018433|Ga0066667_10337965All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1191Open in IMG/M
3300018433|Ga0066667_11180630All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes665Open in IMG/M
3300018482|Ga0066669_11575356Not Available599Open in IMG/M
3300026277|Ga0209350_1119303All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes600Open in IMG/M
3300026295|Ga0209234_1046290All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium1655Open in IMG/M
3300026297|Ga0209237_1261584All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium530Open in IMG/M
3300026298|Ga0209236_1187660All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes801Open in IMG/M
3300026301|Ga0209238_1244883All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium532Open in IMG/M
3300026310|Ga0209239_1084746All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1364Open in IMG/M
3300026313|Ga0209761_1102130All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1431Open in IMG/M
3300026323|Ga0209472_1295071All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes518Open in IMG/M
3300026324|Ga0209470_1104185All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium1271Open in IMG/M
3300026329|Ga0209375_1258236All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium580Open in IMG/M
3300026331|Ga0209267_1024885All Organisms → cellular organisms → Bacteria2941Open in IMG/M
3300026331|Ga0209267_1078356All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1433Open in IMG/M
3300026331|Ga0209267_1292831All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes543Open in IMG/M
3300026332|Ga0209803_1349539All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium513Open in IMG/M
3300026335|Ga0209804_1257441Not Available639Open in IMG/M
3300026524|Ga0209690_1018081All Organisms → cellular organisms → Bacteria3604Open in IMG/M
3300026528|Ga0209378_1232210All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium588Open in IMG/M
3300026547|Ga0209156_10306321All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes716Open in IMG/M
3300027616|Ga0209106_1094690All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium670Open in IMG/M
3300027643|Ga0209076_1100556All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes821Open in IMG/M
3300027655|Ga0209388_1158695All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium637Open in IMG/M
3300031820|Ga0307473_10679540All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium720Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil33.33%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil24.51%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil21.57%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil15.69%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.98%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.98%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.98%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.98%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.98%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cmEnvironmentalOpen in IMG/M
3300002562Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cmEnvironmentalOpen in IMG/M
3300002911Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cmEnvironmentalOpen in IMG/M
3300002916Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cmEnvironmentalOpen in IMG/M
3300005166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123EnvironmentalOpen in IMG/M
3300005171Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126EnvironmentalOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005447Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138EnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005553Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144EnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005566Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142EnvironmentalOpen in IMG/M
3300005576Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157EnvironmentalOpen in IMG/M
3300005587Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103EnvironmentalOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006794Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300010304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015EnvironmentalOpen in IMG/M
3300010320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015EnvironmentalOpen in IMG/M
3300010322Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010337Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012385Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_4_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012391Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_16_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012409Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_16_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012975Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015EnvironmentalOpen in IMG/M
3300014150Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014154Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015EnvironmentalOpen in IMG/M
3300014166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015EnvironmentalOpen in IMG/M
3300015053Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015054Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300026277Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026295Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026297Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026298Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026301Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026310Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026313Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)EnvironmentalOpen in IMG/M
3300026324Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)EnvironmentalOpen in IMG/M
3300026329Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)EnvironmentalOpen in IMG/M
3300026331Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)EnvironmentalOpen in IMG/M
3300026332Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)EnvironmentalOpen in IMG/M
3300026335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)EnvironmentalOpen in IMG/M
3300026524Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)EnvironmentalOpen in IMG/M
3300026528Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)EnvironmentalOpen in IMG/M
3300026547Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)EnvironmentalOpen in IMG/M
3300027616Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027643Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)EnvironmentalOpen in IMG/M
3300027655Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25384J37096_1002157913300002561Grasslands SoilAGDIAGLLANAYEARRLSPPRWVQDLLRHYRVRRGKTASEVA*
JGI25382J37095_1013060543300002562Grasslands SoilQTAALAGDIAGLLANAYEARRLSPPRWVQDLLRHYRVRRGKAASEVA*
JGI25390J43892_1003336513300002911Grasslands SoilMLAGDIAGLLANAYEARRLSPPRWVQELLRHYRVRRGKAASEVA*
JGI25389J43894_110882123300002916Grasslands SoilQTAALAGDIAGLLATAYEARRLSPPRWVQDLLRHYRVRRGKTASEVA*
Ga0066674_1016861543300005166SoilAGDIAGLLANAYEARRLSPPRWVQDLLRHYRVRRGKAASEVA*
Ga0066677_1025883813300005171SoilQLGRDIARLLAEAYEARRLAPPRWVQDLLRQYRSARSKSAGEVA*
Ga0066688_1016213643300005178SoilLGRAITALLADAYQTRRLASPRWVQDLLRHYEPRRGKSSSEVA*
Ga0066688_1086135913300005178SoilGRDIARLLAEAYEARRLSPPRWVQDLLRQYRAARSKSAGEVA*
Ga0066684_1008418813300005179SoilIAALLVESYETRRLAPPRWVQDLLRHYRPRRGKAASEVA*
Ga0066684_1017011343300005179SoilQTGQLGRDIARLLAEAYETRRLAPPRWVQDLVRQYRSARSKSAGEVA*
Ga0066676_1005128313300005186SoilAIAELLVESYEVRRLSPPRWVQALLRHYRPLRGKAASEVA*
Ga0066689_1079555523300005447SoilDIARLLAEAYETRRLAPPRWVQDLVRQYRSARSKSAGEVA*
Ga0066681_1083333323300005451SoilQLGRDIAALLAEGYEARRLEPPRWVEELLRQFRRPRGKAASEVA*
Ga0066697_1047793533300005540SoilAGLLAAAYEARRLSPPRWVQELLRHYRVRRGKAASEVA*
Ga0066701_1002846153300005552SoilANAYEARRLSPPRWVQELLRHYRVRRGKAASEVA*
Ga0066695_1009261243300005553SoilDIAGLVANAYEARRLSPPRWVQELLRHYRVRRGKAASEVA*
Ga0066695_1082973813300005553SoilSPQQTEQLGRTITALLAEAYAARRLSSPRWVQDLLRHYEPRRGKTSSEVA*
Ga0066707_1020538813300005556SoilTQQTAALAGDIAGLLANAYEARRLSPPRWVQDLLRHYRVRRGKAASEVA*
Ga0066698_1049286713300005558SoilPKQTLDLGRALADLLVESYEVRRLSPPRWVRDLVRHYESRPGKAASDVA*
Ga0066670_1066309733300005560SoilELGGSLAELLVESYEVRRLSPPRWVRDLVRHYESRPGKAASDVA*
Ga0066699_1024768743300005561SoilADLSPQQTEQLGRTITALLAEAYAARRLSSPRWVQDLLRHYEPRRGKTSSEVA*
Ga0066693_1027989823300005566SoilLAGLLVDSYEARRLSPPRWVQDLVRHYQPRRGKAASEVA*
Ga0066708_1054363613300005576SoilLGREIAILLAEAYEARRLSPPAWVRSLLRQYRTGRRKAAGQVA*
Ga0066654_1074167123300005587SoilQTVQLGRAIAALLVESYETRRLVPPPWVRELLRHYRPRRGKAAGEVA*
Ga0066656_1095846213300006034SoilAMLAGDIAGLLATAYEARRLSPPRWVQDLLRHYRVRRGKTASEVA*
Ga0066656_1110540923300006034SoilAIAALLVESYETRRLVPPPWVRELLRHYRPRRGKAAGEVA*
Ga0066658_1010833923300006794SoilSPEHTLDLGRALAGLLVDSYEARRLSPPRWVQDLVRHYQPRRGKAASEVA*
Ga0066659_1010640513300006797SoilQTEQLGRAVTALLAEAYAARRLSSPRWVQDLLRHYEPRRGKTSSEVA*
Ga0099793_1047651023300007258Vadose Zone SoilLAAAYEARRLSPPRWVQELLRHYRVRRGKAASEVA*
Ga0099794_1031600313300007265Vadose Zone SoilLGGTLAELLLQSYEVRRLSPPRWVRDLLRHYRPRRGKSASEVA*
Ga0066710_10275633813300009012Grasslands SoilGQLGRDTARLLAEAYETRRLAPPRWVQDLVRQYRSARSKSAGEVA
Ga0066710_10346219813300009012Grasslands SoilPEHTLDLGRALAGLLVDSYEARRLSPPRWVQDLVRHYQPRRGKAASEVA
Ga0066710_10488662623300009012Grasslands SoilLVANAYEARRLSPPRWVQELLRHYRVRRGKAASEVA
Ga0099830_1050406023300009088Vadose Zone SoilLVQSYEVRRLSPPRWVQDLLRHYRPRRGKAASEVA*
Ga0099828_1028153013300009089Vadose Zone SoilTAALAGDIAGLLASGYEARRLSPPRWVQELLRHYRVRRGKAASEVA*
Ga0099828_1055277313300009089Vadose Zone SoilLAELLVQSYEVRRLSPPRWVRDLLRHYRTRRGKAASEVA*
Ga0066709_10028780813300009137Grasslands SoilHQTGQLGRDIARLLAEAYETRRLAPPRWVQDLVRQYRSARSKSAGEVA*
Ga0066709_10038644613300009137Grasslands SoilTLDLGRALAGLLVDSYEARRLSPPRWVQDLVRHYQPRRGKAASEVA*
Ga0114129_1243817713300009147Populus RhizosphereQQTAALAGDIAGLLASAYEARRLSPPRWVQELLRHYRVRRGKAASEVA*
Ga0134088_1027345733300010304Grasslands SoilSPKQALELGGGLAELLVESYEVRRLSPPRWVRDLVRHYESRPGKAASDVA*
Ga0134088_1048892823300010304Grasslands SoilLAEAYAARRLSSPRWVQDLLRHYEPRRGKTSSEVA*
Ga0134109_1006481713300010320Grasslands SoilRAIAALLVESYETRRLVPPPWVRELLRHYRPRRGKAAGEVA*
Ga0134084_1006026643300010322Grasslands SoilVQLGRAIAALLVESYETRRLVPPPWVRELLRHYRPRRGKAAGEVA*
Ga0134086_1043295833300010323Grasslands SoilGLLATAYEARRLSPPRWVQDLLRHYRVRRGKTASEVA*
Ga0134062_1012924643300010337Grasslands SoilLLAEAYETRRLAPPRWVQDLVRQYRSARSKSAGEVA*
Ga0134125_1044401123300010371Terrestrial SoilDVAALLAAAYETRRLSPPRWVQDLLRHYRVRRGKTASEVA*
Ga0137393_1079693023300011271Vadose Zone SoilELGRALAELLVQSYEVRRLSPPRWVQDLLRFYRARRGKAASEVA*
Ga0137364_1108216513300012198Vadose Zone SoilAGDIAGLLATAYEARRLSPPRWVQDLLRHYRVRRGKTASEVA*
Ga0137364_1109752413300012198Vadose Zone SoilTQQTAALAGDIAGLLASAYEARRLSPPRWVQDLLHHYRVRRGKAASEVA*
Ga0137383_1064456613300012199Vadose Zone SoilAHLLVESYEARRLSPPRWVQDLLRYYRPRGGKAASEVA*
Ga0137382_1089340613300012200Vadose Zone SoilLANAYEARRLSPPRWVQDLLRHYRVRRGKAASEVA*
Ga0137363_1148390623300012202Vadose Zone SoilQQTAMLAGDIAGLLANAYEARRLSPPRWVQELLRHYRVRRGKAASEVA*
Ga0137362_1108466313300012205Vadose Zone SoilTLELGRALAELLVHSYEVRRLSPPRWVQDLLRHYRPRRGKAASEVA*
Ga0137376_1086266813300012208Vadose Zone SoilALLAEAYAARRLSSPRWVQDLLRHYQPRRGKTSSEVA*
Ga0137378_1003986663300012210Vadose Zone SoilLAEAYEARRLAPPRWVQDLVRQYRSARSKSAGEVA*
Ga0137377_1021774243300012211Vadose Zone SoilGQLGRDIARLLAEAYEARRLAPPRWVQDLVRQYRSARSKSAGEVA*
Ga0137377_1105690923300012211Vadose Zone SoilAGLLAAAYETRRLSPPRWVQQFLQQYRARRGKTASEVA*
Ga0137377_1117946913300012211Vadose Zone SoilLLVESYETRRLVPPPWVRELLRHYRPRRGKAAGEVA*
Ga0137387_1033483613300012349Vadose Zone SoilAHTIELGRALAGLLVETYEARRLSPPRWVQDLVRYYQPRRGKAASEVA*
Ga0137387_1130872813300012349Vadose Zone SoilIAGLLATAYDARRLSPPRWVQELLRHYRVRRGKAASEVA*
Ga0137386_1126921523300012351Vadose Zone SoilGLLANEYEARRLSPPRWVQDLLRHYRVRRGKAASEVA*
Ga0137371_1048482813300012356Vadose Zone SoilGREIAGLLAAAYETRRLSPPRWVQQFLQQYRARRGKTASEVA*
Ga0134023_111061123300012385Grasslands SoilLAGDIAGLLAVAYEARRLSPPRWVQELLRHYRVRRGKAASEVA*
Ga0134035_128468313300012391Grasslands SoilTVLLADAYTARRLASPRWVQQLLRHYQTRRGKSSSEVA*
Ga0134045_111078813300012409Grasslands SoilLSPVQTLELGRVLAELLVQSYEVRRLSPPRWVQDLLRHYRPRRGKAASEVA*
Ga0134110_1003814053300012975Grasslands SoilAAAYETRRLSPPRWVQQFLQQYRARRGKTASEVA*
Ga0134110_1034080723300012975Grasslands SoilLAGDIAGLLANAYEARRLSPPRWVQELLRHYRVRRGKAASEVA*
Ga0134110_1038937413300012975Grasslands SoilQTVQLGRDIAILLAEAYEARRLSPPAWVRSLLRQYRTGRRKAAGQVA*
Ga0134081_1031170523300014150Grasslands SoilDIAELLAEAYETRRLEPPRWVQALLRHFRPRGKAASEVA*
Ga0134081_1042638613300014150Grasslands SoilLGRALAELLVQSYEVRRLSPPRWVQDLLRHYRARRGKAASEVA*
Ga0134075_1020789213300014154Grasslands SoilQTLELGRVLAELLVQSYEVRRLSPPRWVQDLLRHYRPRRGKAASEVA*
Ga0134079_1019337933300014166Grasslands SoilGRAITALLADAYATRRLSSPRWVQELLRHYEPRRGKTSSEVA*
Ga0137405_118659813300015053Vadose Zone SoilAGDIAALLATLATGYETRRLSPPRWVQDLLRHYRVRRGKTASEVA*
Ga0137420_149923013300015054Vadose Zone SoilIAGLLATAYETRRLSPPRWVQDLLRHYRVRRGKTASEVA*
Ga0066655_1064691113300018431Grasslands SoilIAGLLAAAYEARRLSPPRWVQELLRHYRVRRGKAASEVA
Ga0066655_1094475223300018431Grasslands SoilSSYVSHQQTEQLGREIAARLVRSYEARGLSPPRWVQDLLRHYRPRRRKAAAAGEVA
Ga0066655_1115206713300018431Grasslands SoilTAMLAGDIAGLLATAYEARRLSPPRWVQDLLRHYRVRRGKTASEVA
Ga0066667_1033796543300018433Grasslands SoilGDIAGLLATAYEARRLSPPRWVQDLLRHYRVRRGKTASEVA
Ga0066667_1118063013300018433Grasslands SoilALLAEAYAARRLSSPRWVQDLLRHYEPRRVKTSSEVA
Ga0066669_1157535633300018482Grasslands SoilLSTQQTAALAGDIAALLANAYEARRLSPPRWVQDLLRHYRVRRGKSASEVA
Ga0209350_111930323300026277Grasslands SoilQLGRDIARLLAEAYETRRLAPPRWVQDLVRQYRSARTKSAGEVA
Ga0209234_104629013300026295Grasslands SoilQQTAALAGDIAALLANAYEARRLSPPRWVQDLLRHYRVRRGKSASEVA
Ga0209237_126158423300026297Grasslands SoilLGLGRALAGLLVESYEARRLSPPRWVQDLVRHYRPRGKAASEVA
Ga0209236_118766013300026298Grasslands SoilGDIAGLLATAYDARRLSPPRWVQDLLRHYRVRRGKTASEVA
Ga0209238_124488323300026301Grasslands SoilQTAALAGDIAGLLATAYEARRLSPPRWVQDLLRHYRVRRGKAASEVA
Ga0209239_108474643300026310Grasslands SoilTAMLAGDIAGLLATAYDARRLSPPRWVQDLLRHYRVRRGKTASEVA
Ga0209761_110213043300026313Grasslands SoilRAVTALLAEAYAARRLSSPRWVQDLLRHYEPRRGKTSSEVA
Ga0209472_129507113300026323SoilGRDIAALLAEGYEARRLEPPRWVEELLRQFRRPRGKAASEVA
Ga0209470_110418513300026324SoilFGRAIAELLVESYEVRRLSPPRWVQALLRHYRPLRGKAASEVA
Ga0209375_125823633300026329SoilLSKAYESRSLSPPRWAQELLRHYRARPGKSETEVA
Ga0209267_102488533300026331SoilLLVESYEARRLSPPRWVQDLLRYYRPRGGKAASEVA
Ga0209267_107835643300026331SoilQQTEQLGRAITALLADAYQTRRLASPRWVQDLLRHYEPRRGKSSSEVA
Ga0209267_129283123300026331SoilRDIARLLAEAYEARRLSPPRWVQDLLRQYRAARSKSAGEVA
Ga0209803_134953913300026332SoilELGRTVAHLLVESYEARRLSPPRWVQDLLRYYRPHGGKAASEVA
Ga0209804_125744113300026335SoilEQLGRAITALLADAYTARRLSSPRWVQDLLRHYDTRRGKTSSEVA
Ga0209690_101808153300026524SoilLATAYEARRLSPPRWVQELLRHYRVRRGKTASEVA
Ga0209378_123221023300026528SoilHTLDLGRALAGLLVDSYEARRLSPPRWVQDLVRHYQPRRGKAASEVA
Ga0209156_1030632123300026547SoilLLAAAYETRRLSPPRWVQQFLQQYRARRGKTASEVA
Ga0209106_109469013300027616Forest SoilGDIAGLLAAAYEARRLSPPRWVQELLRHYRVRRGKAASEVA
Ga0209076_110055623300027643Vadose Zone SoilALLATAYETRRLSPPRWVQDLLRHYRVRRGKTASEVA
Ga0209388_115869523300027655Vadose Zone SoilRALAELLVQSYEARRLSPPRWVRDLLRHYRTRRGKVASEVA
Ga0307473_1067954033300031820Hardwood Forest SoilAALAGDIAGLLATAYEARRLSPPRWVQELLRHYRVRRVKAASEVA


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