Metagenome / Metatranscriptome Family F100903

Basic Information
Family ID	F100903
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	44 residues
Representative Sequence	MKKIYGVVALAATLIGAILLLERTVRVAAAAPPTGIKNVVLVHGAF
Number of Associated Samples	81
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	93.14 %
% of genes near scaffold ends (potentially truncated)	98.04 %
% of genes from short scaffolds (< 2000 bps)	87.25 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Most Common Taxonomy
Group	Bacteria (81.373 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.412 % of family members)
Environment Ontology (ENVO)	Unclassified (30.392 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (64.706 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 37.84% β-sheet: 0.00% Coil/Unstructured: 62.16%
Feature Viewer

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Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00196	GerE	12.75
PF02954	HTH_8	6.86
PF12833	HTH_18	6.86
PF07730	HisKA_3	3.92
PF07638	Sigma70_ECF	2.94
PF08447	PAS_3	2.94
PF00390	malic	1.96
PF02852	Pyr_redox_dim	1.96
PF00589	Phage_integrase	1.96
PF00158	Sigma54_activat	1.96
PF12697	Abhydrolase_6	1.96
PF00072	Response_reg	0.98
PF00107	ADH_zinc_N	0.98
PF01738	DLH	0.98
PF02826	2-Hacid_dh_C	0.98
PF07494	Reg_prop	0.98
PF14534	DUF4440	0.98
PF00069	Pkinase	0.98
PF00977	His_biosynth	0.98
PF07366	SnoaL	0.98
PF16925	TetR_C_13	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.92
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	3.92
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	3.92
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	3.92
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	3.92
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	2.94
COG0281	Malic enzyme	Energy production and conversion [C]	1.96
COG3292	Periplasmic ligand-binding sensor domain	Signal transduction mechanisms [T]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.37 %
Unclassified	root	N/A	18.63 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.37 %
Unclassified	root	N/A	18.63 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.37 %
Unclassified	root	N/A	18.63 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	26.47 %
Unclassified	root	N/A	18.63 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.80 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	3.92 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	22.55 %
Unclassified	root	N/A	18.63 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	7.84 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.94 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.96 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.98 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	22.55 %
Unclassified	root	N/A	18.63 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	6.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.94 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.98 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.98 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.98 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	22.55 %
Unclassified	root	N/A	18.63 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	4.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.94 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	0.98 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.98 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.98 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.98 %
Cytophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.63 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	6.86 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	4.90 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	2.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.94 %
Acidipila	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila	0.98 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.98 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.98 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.98 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.98 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.63 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	5.88 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	4.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.94 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.96 %
Acidobacteriaceae bacterium KBS 89	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	0.98 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.98 %
Acidipila rosea	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → Acidipila rosea	0.98 %
Paraburkholderia caribensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia caribensis	0.98 %
Cytophagaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae	0.98 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.98 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.98 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.63 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	5.88 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	4.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.94 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.96 %
Spirosoma	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Spirosoma	0.98 %
Acidobacteriaceae bacterium KBS 89	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	0.98 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.98 %
Acidipila rosea	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → Acidipila rosea	0.98 %
Paraburkholderia caribensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia caribensis	0.98 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.98 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.98 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.63 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	5.88 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	4.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.94 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.96 %
Spirosoma spitsbergense	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Spirosoma → Spirosoma spitsbergense	0.98 %
Acidobacteriaceae bacterium KBS 89	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	0.98 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.98 %
Acidipila rosea	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → Acidipila rosea	0.98 %
Paraburkholderia caribensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia caribensis	0.98 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.98 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.98 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001087\|JGI12677J13195_1001371	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2711	Open in IMG/M
3300001867\|JGI12627J18819_10102261	All Organisms → cellular organisms → Bacteria	1183	Open in IMG/M
3300002245\|JGIcombinedJ26739_101077026	Not Available	690	Open in IMG/M
3300004082\|Ga0062384_100107066	All Organisms → cellular organisms → Bacteria	1508	Open in IMG/M
3300004082\|Ga0062384_100778915	Not Available	666	Open in IMG/M
3300004091\|Ga0062387_100865531	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	680	Open in IMG/M
3300004091\|Ga0062387_101136244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia caribensis	608	Open in IMG/M
3300004091\|Ga0062387_101292173	Not Available	576	Open in IMG/M
3300004092\|Ga0062389_100126622	All Organisms → cellular organisms → Bacteria	2342	Open in IMG/M
3300004092\|Ga0062389_100642667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1229	Open in IMG/M
3300004092\|Ga0062389_101128713	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	969	Open in IMG/M
3300004092\|Ga0062389_101875833	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300004635\|Ga0062388_100294143	All Organisms → cellular organisms → Bacteria	1351	Open in IMG/M
3300004635\|Ga0062388_101096030	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300004635\|Ga0062388_101645802	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300004635\|Ga0062388_101873842	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Spirosoma → Spirosoma spitsbergense	617	Open in IMG/M
3300005332\|Ga0066388_106528112	Not Available	588	Open in IMG/M
3300005468\|Ga0070707_101488635	Not Available	644	Open in IMG/M
3300005537\|Ga0070730_11006242	All Organisms → cellular organisms → Bacteria → Proteobacteria	520	Open in IMG/M
3300006755\|Ga0079222_11166013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	685	Open in IMG/M
3300006903\|Ga0075426_11449144	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300006914\|Ga0075436_100817253	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300009665\|Ga0116135_1023881	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	2091	Open in IMG/M
3300010159\|Ga0099796_10217964	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	781	Open in IMG/M
3300010376\|Ga0126381_103782269	Not Available	591	Open in IMG/M
3300012189\|Ga0137388_10330517	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1402	Open in IMG/M
3300012203\|Ga0137399_10473587	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
3300012205\|Ga0137362_10855684	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	778	Open in IMG/M
3300012362\|Ga0137361_10947893	All Organisms → cellular organisms → Bacteria → PVC group	779	Open in IMG/M
3300012683\|Ga0137398_10673882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	718	Open in IMG/M
3300012925\|Ga0137419_10934224	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300014156\|Ga0181518_10186369	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1087	Open in IMG/M
3300014489\|Ga0182018_10284566	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300014657\|Ga0181522_10017376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3895	Open in IMG/M
3300016294\|Ga0182041_11234639	Not Available	682	Open in IMG/M
3300016422\|Ga0182039_10993518	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300017948\|Ga0187847_10271854	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	925	Open in IMG/M
3300017948\|Ga0187847_10870582	Not Available	512	Open in IMG/M
3300018030\|Ga0187869_10393648	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	661	Open in IMG/M
3300018035\|Ga0187875_10504682	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	641	Open in IMG/M
3300018047\|Ga0187859_10734617	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300020579\|Ga0210407_10853548	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300020580\|Ga0210403_11168141	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300020580\|Ga0210403_11450364	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	518	Open in IMG/M
3300020582\|Ga0210395_11339234	Not Available	523	Open in IMG/M
3300021088\|Ga0210404_10444464	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300021168\|Ga0210406_10025440	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5436	Open in IMG/M
3300021168\|Ga0210406_11127569	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300021170\|Ga0210400_10730459	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	813	Open in IMG/M
3300021171\|Ga0210405_11093089	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300021178\|Ga0210408_10142959	All Organisms → cellular organisms → Bacteria	1893	Open in IMG/M
3300021178\|Ga0210408_11481461	Not Available	509	Open in IMG/M
3300021181\|Ga0210388_10844480	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300021358\|Ga0213873_10119067	Not Available	774	Open in IMG/M
3300021372\|Ga0213877_10085763	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300021401\|Ga0210393_10870499	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300021402\|Ga0210385_10007452	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6587	Open in IMG/M
3300021403\|Ga0210397_10009082	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6010	Open in IMG/M
3300021403\|Ga0210397_10143124	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	1664	Open in IMG/M
3300021403\|Ga0210397_10530728	All Organisms → cellular organisms → Bacteria → Proteobacteria	894	Open in IMG/M
3300021406\|Ga0210386_10358191	All Organisms → cellular organisms → Bacteria	1255	Open in IMG/M
3300021420\|Ga0210394_11663905	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300021432\|Ga0210384_10130033	All Organisms → cellular organisms → Bacteria	2260	Open in IMG/M
3300021433\|Ga0210391_10860699	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300021478\|Ga0210402_11067792	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300021479\|Ga0210410_10106490	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2478	Open in IMG/M
3300021479\|Ga0210410_10857793	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	794	Open in IMG/M
3300021479\|Ga0210410_11517692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	563	Open in IMG/M
3300021559\|Ga0210409_10075382	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3131	Open in IMG/M
3300021559\|Ga0210409_10671879	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300022840\|Ga0224549_1031912	Not Available	715	Open in IMG/M
3300025922\|Ga0207646_10994485	Not Available	741	Open in IMG/M
3300026514\|Ga0257168_1006197	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2080	Open in IMG/M
3300027371\|Ga0209418_1050978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	735	Open in IMG/M
3300027727\|Ga0209328_10035798	All Organisms → cellular organisms → Bacteria	1528	Open in IMG/M
3300027729\|Ga0209248_10106941	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300027768\|Ga0209772_10096031	All Organisms → cellular organisms → Bacteria	909	Open in IMG/M
3300027829\|Ga0209773_10223780	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300027853\|Ga0209274_10458248	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300027908\|Ga0209006_10821611	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	752	Open in IMG/M
3300027915\|Ga0209069_11041412	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	504	Open in IMG/M
3300028047\|Ga0209526_10071239	All Organisms → cellular organisms → Bacteria	2445	Open in IMG/M
3300028536\|Ga0137415_11052079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	626	Open in IMG/M
3300028773\|Ga0302234_10442738	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300028806\|Ga0302221_10266278	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300029882\|Ga0311368_11048283	Not Available	534	Open in IMG/M
3300030042\|Ga0302300_1224448	Not Available	518	Open in IMG/M
3300030503\|Ga0311370_11649163	Not Available	661	Open in IMG/M
3300030746\|Ga0302312_10047355	All Organisms → cellular organisms → Bacteria	1924	Open in IMG/M
3300030906\|Ga0302314_11240477	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300031090\|Ga0265760_10152036	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → Acidipila rosea	760	Open in IMG/M
3300031708\|Ga0310686_102646088	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2682	Open in IMG/M
3300031708\|Ga0310686_106109237	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	845	Open in IMG/M
3300031754\|Ga0307475_10235613	All Organisms → cellular organisms → Bacteria → Acidobacteria	1466	Open in IMG/M
3300031754\|Ga0307475_10761277	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	770	Open in IMG/M
3300031799\|Ga0318565_10544392	Not Available	559	Open in IMG/M
3300031820\|Ga0307473_10649355	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300031823\|Ga0307478_11294358	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	606	Open in IMG/M
3300031890\|Ga0306925_11104060	Not Available	801	Open in IMG/M
3300031942\|Ga0310916_11134744	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300032180\|Ga0307471_100231416	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1883	Open in IMG/M
3300032180\|Ga0307471_101250865	Not Available	905	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.06%
Host-Associated	Host-Associated	2.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.55%
Aquatic	Environmental → Aquatic	24.51%
Plants	Host-Associated → Plants	2.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.71%
Freshwater	Environmental → Aquatic → Freshwater	23.53%
Peat	Environmental → Terrestrial → Peat	7.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.94%
Sediment	Environmental → Aquatic → Sediment	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.94%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	23.53%
Loam	Environmental → Terrestrial → Soil → Loam	10.78%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	38.24%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	22.55%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.82%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.41%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	15.69%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.86%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.88%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.96%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.98%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.98%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.98%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001087	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021358	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3	Host-Associated	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022840	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 1-5	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300028806	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030042	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_1	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030746	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_1	Environmental	Open in IMG/M
3300030906	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100903

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12677J13195_10013711	3300001087	Forest Soil	MKKFYVVVTLAATLMGAALLLKKTPKVAAAAGPTGI
JGI12627J18819_101022611	3300001867	Forest Soil	MKKIYGVVALTVALAGATLLLKTTTKVEAAAAPAGIKNV
JGIcombinedJ26739_1010770262	3300002245	Forest Soil	MRKFCFVVALAAALLGAAMLLKKTPKVAAAAGPTGIK
Ga0062384_1001070661	3300004082	Bog Forest Soil	MKRLYVVATLAATVMGAILLLDKTVSVAAAASPTGIKNVVLVHGAF
Ga0062384_1007789151	3300004082	Bog Forest Soil	MKKIYGVVTLAATLTGATLLLEHTQERTVAAAAAAAPTGI
Ga0062387_1008655311	3300004091	Bog Forest Soil	MKKTYGVVALAVLIGATLVLEKNVTVAATAPPTGVKNVVLVHGAFA
Ga0062387_1011362441	3300004091	Bog Forest Soil	MKKLYVIATLAVTLTAAILLLDKTVRVAAAASPTGIKNVVLVHGA
Ga0062387_1012921731	3300004091	Bog Forest Soil	MKKQNNPIIMNIICRVRTLTASLMGVILLLDGTVRVAVAAPPTGIKNVVLVHGAF
Ga0062389_1001266221	3300004092	Bog Forest Soil	MKNIYEVVALAGMLLGATVLLEKAAGGAAAAPPTGIRNVVLVHGAFADG
Ga0062389_1006426672	3300004092	Bog Forest Soil	LKLELERRMAMKKLYVIATLAVTLTAAILLLDKTVRVAAAASPTGIKNVVLVHG
Ga0062389_1011287132	3300004092	Bog Forest Soil	MRRLYGVVALATTLMGAILLLQRTVGVAAPASPTGIKNVV
Ga0062389_1018758331	3300004092	Bog Forest Soil	MKKIYGVVTLAAVLMSATLLLERTVKVAAAAPAGIKNVVLVHGAFAD
Ga0062388_1002941431	3300004635	Bog Forest Soil	MAMKRLYVVATLAATVMGAILLLDKTVSVAAAASPTGIKNVVLVHGAF
Ga0062388_1010960303	3300004635	Bog Forest Soil	MKKIYGVVTLAAVLMSATLLLERTVKVAAAAPAGIKNVVLVHGAFADG
Ga0062388_1016458021	3300004635	Bog Forest Soil	MAMKKLYVIATLAVTLTAAILLLDKTVRVAAAASPTGIKNVVLVHGAF
Ga0062388_1018738421	3300004635	Bog Forest Soil	MKKIYGVVALAATLIGAILLLERTVRVAAAAPPTGIKNVVLVHGAF
Ga0066388_1065281121	3300005332	Tropical Forest Soil	VKKLYGVVLMGATLALLTSLKVAVARPATGIKNVVLVHGAFAD
Ga0070707_1014886351	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKPNCRNVMTKLYAVAALAATLMGGTLLLERTVRVAAAAP
Ga0070730_110062421	3300005537	Surface Soil	MKKIYGVVAFTVALAGATLLLKATTKVEAAAAPVGIKNVVLVHGAFAD
Ga0079222_111660132	3300006755	Agricultural Soil	MKKIYGVVALAATLMGGTLLLERSVRVAAATQPTGIKKR
Ga0075426_114491441	3300006903	Populus Rhizosphere	MKKIYGVVTLAATLMCAILLLERPVIRVAAAESPTGIKNVVLVHGAF
Ga0075436_1008172533	3300006914	Populus Rhizosphere	MKKVYLVAMLVAMLMGATLLLERTVKVAAAAPAGIKNVVLVHGAF
Ga0116135_10238811	3300009665	Peatland	MIMKKTFEVVMLVATLMGATLLLARNIKVAAAPPLGIK
Ga0099796_102179643	3300010159	Vadose Zone Soil	LDDSLKLKLERSIIMKKIYGVATLVAMLLGATLLLERTVRVAAAAPAGIKNVVLVHGAF
Ga0126381_1037822691	3300010376	Tropical Forest Soil	MKKLNAVVALTTTLMGATLLLQTTLKVAAAPTPTGIKN
Ga0137388_103305171	3300012189	Vadose Zone Soil	LDDSSKLKLERRIFMKKIYGVVTLAAMLIGATLLLERTVKVAAAAPIGIKNVVLVHGAFA
Ga0137399_104735871	3300012203	Vadose Zone Soil	MKFKLERKIIMKKIYGVVALVATLMGATPLLERTTKVAAAAAPTGIKNVVL
Ga0137362_108556841	3300012205	Vadose Zone Soil	LDDSLKLKLERRIFMKKIYGVVTLAAMLIGATLLLERTVKVAAAAPIGIKNVVLVHGA
Ga0137361_109478932	3300012362	Vadose Zone Soil	MKTSTQNKKKIYGVVTLAAMGAILLLEGTVSVAAAAATSIMNVVLVHGAFADGSG
Ga0137398_106738822	3300012683	Vadose Zone Soil	MKFKLERKIIMKKIYGVVAVVAMLMGATLLLERTVRVAAAAPTGIKNVVL
Ga0137419_109342241	3300012925	Vadose Zone Soil	MERRMIMKKIYGVVTFVAMLMGATLVLERTVRVAA
Ga0181518_101863691	3300014156	Bog	MIMKRIYWVVTLAATLMVATLMLDRTLKVSAAASVPLAGIKNVVLVHGAF
Ga0182018_102845661	3300014489	Palsa	MKKLYAVVTLAALLIGTTLLLERTGRVAAAPVPSGIKN
Ga0181522_100173761	3300014657	Bog	MKKIYGVVTLAMLMGATLLLERTVKVSAAPPTGIKNVVL
Ga0182041_112346391	3300016294	Soil	MKKPYGVVPLIVVLMGAILLLQTLKVAAAPPPTGIKNVVLVHGAFA
Ga0182039_109935181	3300016422	Soil	MKKPYGVVTRIVVVMGAILLLQTLKVAAAPPPTGIKNVVLV
Ga0187847_102718542	3300017948	Peatland	MKKCYGVLALVTTLAGAILLLEKTAGVAAAAPTGIKNVVLVHGA
Ga0187847_108705821	3300017948	Peatland	MKKLYGVIALAATVTGAGLLLDKTVRVVAAAPTGIKNVVLVHGA
Ga0187869_103936482	3300018030	Peatland	MKKIYGVVALAATLVGGSLLLERTVKVAAAAPAGIKNVVLVHGAFA
Ga0187875_105046822	3300018035	Peatland	MKRIYWVVTLAATLMVATLMLDRTLKVSAAASVPLAGIKNVVLVHGAFA
Ga0187859_107346172	3300018047	Peatland	MKKIYAVITLVLLLVGATMLVGKTPKVAASPSPSGIKNVVLVHGAFAD
Ga0210407_108535481	3300020579	Soil	MKSIYGVALAAMLMGATLLLERTVKVAAAASPTGIKNVV
Ga0210403_111681411	3300020580	Soil	MKKIYGVVALVAMLMGATLLLERTVKVAAAPPTPTGIKNVVVV
Ga0210403_114503641	3300020580	Soil	MPKIKKSYGVVTLAATLMGAILLMEGTVGVATAAPSAGIKNVVL
Ga0210395_113392341	3300020582	Soil	MFKQTKICGVVTLAAALTGAILLLDGTIRVAVAAPPAGIKNVVLVH
Ga0210404_104444641	3300021088	Soil	MKKIYGVVALVAMLMGATLLLERTVKVAAAAPTGIKN
Ga0210406_100254406	3300021168	Soil	MKKIYGVVTLVAVLLGATLLLERTVKVAAAASPTGIK
Ga0210406_111275692	3300021168	Soil	MKKIYGVVTLVAMLLGATLLLERTVRVAAAAPAGIKNVVL
Ga0210400_107304593	3300021170	Soil	MKKIYWVVTLVVMLTGATLLLQRTVKVAAAAPAGIKNVVLVHGAL
Ga0210405_110930892	3300021171	Soil	MKKIYGVVALAALLMGATLLLQKTTKVAAAQPAPSTGIK
Ga0210408_101429593	3300021178	Soil	MKKIYGVVTLVAMLMGATLLLERTVRVAAAAPAGIKNV
Ga0210408_114814611	3300021178	Soil	MKTFYGVVTLVAAIIGATLLMERTVKVAAAAPAGIKNVVLVHG
Ga0210388_108444801	3300021181	Soil	MKKIYGVVAFTVALAGATLLLKATTKVEAAAAPVGIKNDV
Ga0213873_101190673	3300021358	Rhizosphere	MKKPYGVVTLIAVLMGAILLLQTLKVAAAPPPTGIKNVVLV
Ga0213877_100857633	3300021372	Bulk Soil	MKKPYGVVTLIAVLMGAILLLQTLKVAAAPPPTGIKNVVL
Ga0210393_108704992	3300021401	Soil	MKKVYLVTALVAALIVTTLLLETRCSVAAATSPSPAGIKNVVLVHGAFAEERV
Ga0210385_100074527	3300021402	Soil	MKKIYGVVTLAMLMGATLLLERTVKVSAAPPTGIKNVVLVHGAFAGLRLGSRREDP
Ga0210397_100090825	3300021403	Soil	MKKIYGVVTLAMLMGATLLLERTVKVSAAPPTGIKNEVLVHGA
Ga0210397_101431243	3300021403	Soil	MKKFYGVVTLAAVLMGGTLLLERTVKVAAAAPTGI
Ga0210397_105307283	3300021403	Soil	AMKKVYLVTALVAALIVTTLLLETRCSVAAATSPSPAGIKNVVLVHGAFAEERV
Ga0210386_103581912	3300021406	Soil	MKTFYGVVTLVAAIMGATLLMERTVKVAAAAPAGIK
Ga0210394_116639052	3300021420	Soil	MKKIYGVITLAALLMGATLLLERTVRVAAAAPTGIKNVVLVHGAFADGS
Ga0210384_101300331	3300021432	Soil	MKTFYGVVTLVAVIMGATLLMERTVKVAAAAPTGIK
Ga0210391_108606991	3300021433	Soil	MKNLYRTVALAATLFGAVLLERTIGVAAAVAPAGIKNVVLVH
Ga0210402_110677921	3300021478	Soil	LKLKLERRIIMKKIYGVITLAALLMGATLLLERTVRVAAAAPTGIKNVVLVHGAFA
Ga0210410_101064901	3300021479	Soil	MKTFYGVVTLVAVIMGATLLMERTVKVAAAAPTGIKNVVLVHGAFA
Ga0210410_108577933	3300021479	Soil	MKKIYGVVTLVAMLLGATLLLERTVRVAAAAPAGIKNVVLVHGAFAD
Ga0210410_115176921	3300021479	Soil	MKKIYGVVALAATLMGATLLLERTVSVAAAAPTGIKNV
Ga0210409_100753824	3300021559	Soil	MKSIYGVVALAAMLMSATLLLERTVKVAAAAAPTGIKNVVLVHG
Ga0210409_106718792	3300021559	Soil	MKKIYGVVTLAAVLIGATLLLERTVRVAAAAAPTGIKNAVL
Ga0224549_10319121	3300022840	Soil	MKKLYAVVTLAAVLMGTTLLLKRTGRVAAAAAPSGIKNVVLVHGAFA
Ga0207646_109944852	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKKLCGVVTLVPALMTATLLMQTTLKVAAAPPSTGIKNVVLVHGAF
Ga0257168_10061974	3300026514	Soil	MKSIYGVVALAAMLMGVTLLLERTVKVAAAASPTGIKNVVLVH
Ga0209418_10509781	3300027371	Forest Soil	MKKIYGVVALTVALAGATLLLKTTTKVEAAAAPVGIKNVVLVH
Ga0209328_100357982	3300027727	Forest Soil	MKKVYGVVTLAAMLMGATLLLERTVKVAAAAPAGIKNVV
Ga0209248_101069411	3300027729	Bog Forest Soil	MMKKVFGAVTLAAVLMGAILLLERTVKVAAAEPAQPTGIKNVVLVHGAFADG
Ga0209772_100960311	3300027768	Bog Forest Soil	MKIQIKSHIVLLTATLIGATLLLEGTVRVAAAAPTGIKNVVLVHGAFADGSG
Ga0209773_102237801	3300027829	Bog Forest Soil	MKKIYGVVMLAALLMGATLLMERTVKVAAAASPSGIKNIVLV
Ga0209274_104582482	3300027853	Soil	MKKIYGVVTLAVTLMGAALLLDRTVRVAAAPSPTGI
Ga0209006_108216111	3300027908	Forest Soil	MRNRYAVITLTAAVIGATLLLGKPLKVAAAGPAPTGIKNVVLVHGAFADG
Ga0209069_110414121	3300027915	Watersheds	MKKIYEVVTLVAMLMGATLLRGRIVRVAAAASPSGIKNVVLVHG
Ga0209526_100712391	3300028047	Forest Soil	MKKVYGVVTLAAMLMGATLLLERTVKVAAAAPTGIK
Ga0137415_110520792	3300028536	Vadose Zone Soil	MKKIYGVVALAATLMGATLLLERTVKVAAAAAPTGI
Ga0302234_104427382	3300028773	Palsa	MKKLYAVVTLAAVLMGTALLLKRTGGVAAAAAPSGI
Ga0302221_102662782	3300028806	Palsa	MKKLYAVVTLAAVLMGTMLLLKRTGRVAAAAAPSGIKNVVLVHGAFADG
Ga0311368_110482832	3300029882	Palsa	MKKLYAVVTLAAVLMGTMLLLKRTGRVAAAAAPSGIKNVVLVHGAF
Ga0302300_12244481	3300030042	Palsa	MKKFCFVVTLAATLMGAALLIKNTPKVAAAAGPTGIKNVVLVH
Ga0311370_116491632	3300030503	Palsa	MTKRNGVVTLAAALMGAVLLLETSMNIAAAASPAGIKNVVLVHGAFADGS
Ga0302312_100473553	3300030746	Palsa	MKKIYGVVTLAVLLMGATLLLEKTTKVAAAAAPTGIKNVVLVHGAFAD
Ga0302314_112404772	3300030906	Palsa	MKKLYAVVTLAAVLMGTMLLLKRTGRVAAAAAPSGIKNVVLVHGA
Ga0265760_101520362	3300031090	Soil	MKKFHGVLTIAALLSAVLLIERTLKVAAAAPPAGIKNVVLVHG
Ga0310686_1026460881	3300031708	Soil	MKKFHGVVTIAALLGAVLLLERALKVAAAAPPAGIKNVVLVHG
Ga0310686_1061092372	3300031708	Soil	MKKLYAAVTLSAVLMGTTLLLERTGRVAAAAAPSGIKNVVLVHGAFA
Ga0307475_102356132	3300031754	Hardwood Forest Soil	MKKSIGVVTIAATLIGAVLLLERSVNIAVAAPPAGIRNVVLVHGAF
Ga0307475_107612771	3300031754	Hardwood Forest Soil	VKKIYGIVTLVALMGATLLLQRTVKVAAATTPTGIKNVVLVHGAFAD
Ga0318565_105443921	3300031799	Soil	MKKPYGVVTLIAVLMGAILLQTLKVAAAPPPAGIKNVVLVHGAFAD
Ga0307473_106493551	3300031820	Hardwood Forest Soil	MKKIYGAVTLAATLVGATLLLAKTPKAGGAAPQTGIKNVVLVHGA
Ga0307478_112943582	3300031823	Hardwood Forest Soil	MKTSTQNMKKIYGVVTLAATLMGAILLLERTQERTVAAAGAASPSGIKNVVLVHG
Ga0306925_111040601	3300031890	Soil	MKKPYGVVTLIAVLMGAILLLQTLKVAAAPPPTGIKNVVLVHGAFAD
Ga0310916_111347441	3300031942	Soil	MKKPYGVVTLIVVLMGAILLLQTLKVAAAPPPTGIKNVV
Ga0307471_1002314163	3300032180	Hardwood Forest Soil	LKLKLERRIVMKKIYGVVTLVAMLMGATLLLERTVKVAAAAPAGIKNVVLVHGA
Ga0307471_1012508652	3300032180	Hardwood Forest Soil	MKKLYAVAMLAATLIGATLLLERTLTVAAAAPPTG

Hidden Markov Model


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