Metagenome Family F100922

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100922
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	46 residues
Representative Sequence	MTEAIIFVAAILTLASAILAALYGLVRNAPPQPQRQSYRRHRPWNFK
Number of Associated Samples	54
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	76.92 %
% of genes near scaffold ends (potentially truncated)	4.90 %
% of genes from short scaffolds (< 2000 bps)	29.41 %
Associated GOLD sequencing projects	48
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (91.176 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (27.451 % of family members)
Environment Ontology (ENVO)	Unclassified (49.020 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (77.451 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.00% β-sheet: 0.00% Coil/Unstructured: 64.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF04392	ABC_sub_bind	1.96
PF10994	DUF2817	1.96
PF03328	HpcH_HpaI	1.96
PF12849	PBP_like_2	1.96
PF03401	TctC	0.98
PF00188	CAP	0.98
PF05532	CsbD	0.98
PF00196	GerE	0.98
PF05235	CHAD	0.98
PF08755	YccV-like	0.98
PF02163	Peptidase_M50	0.98
PF04966	OprB	0.98
PF12327	FtsZ_C	0.98
PF04226	Transgly_assoc	0.98
PF04773	FecR	0.98
PF02776	TPP_enzyme_N	0.98
PF05036	SPOR	0.98
PF13683	rve_3	0.98
PF13924	Lipocalin_5	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	1.96
COG2301	Citrate lyase beta subunit	Carbohydrate transport and metabolism [G]	1.96
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.96
COG3836	2-keto-3-deoxy-L-rhamnonate aldolase RhmA	Carbohydrate transport and metabolism [G]	1.96
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.98
COG2340	Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain	Cell cycle control, cell division, chromosome partitioning [D]	0.98
COG3025	Inorganic triphosphatase YgiF, contains CYTH and CHAD domains	Inorganic ion transport and metabolism [P]	0.98
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.98
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.98
COG3659	Carbohydrate-selective porin OprB	Cell wall/membrane/envelope biogenesis [M]	0.98
COG3785	Heat shock protein HspQ	Posttranslational modification, protein turnover, chaperones [O]	0.98
COG5607	CHAD domain, binds inorganic polyphosphates	Function unknown [S]	0.98

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.18 %
All Organisms	root	All Organisms	8.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.18 %
cellular organisms	root	All Organisms → cellular organisms	8.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.18 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	8.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.18 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.18 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.18 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.94 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.18 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.18 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.18 %
Agrobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium	0.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.18 %
Agrobacterium tumefaciens complex	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium → Agrobacterium tumefaciens complex	0.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.18 %
Agrobacterium tumefaciens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium → Agrobacterium tumefaciens complex → Agrobacterium tumefaciens	0.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005332\|Ga0066388_100176149	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2743	Open in IMG/M
3300005332\|Ga0066388_100288046	All Organisms → cellular organisms → Bacteria	2286	Open in IMG/M
3300005764\|Ga0066903_100149495	Not Available	3350	Open in IMG/M
3300005764\|Ga0066903_101127127	Not Available	1449	Open in IMG/M
3300005764\|Ga0066903_101306277	Not Available	1356	Open in IMG/M
3300005764\|Ga0066903_101750195	Not Available	1185	Open in IMG/M
3300005764\|Ga0066903_102745787	Not Available	955	Open in IMG/M
3300005764\|Ga0066903_103108866	Not Available	898	Open in IMG/M
3300009792\|Ga0126374_10259733	All Organisms → cellular organisms → Bacteria	1140	Open in IMG/M
3300010048\|Ga0126373_10141000	Not Available	2280	Open in IMG/M
3300010048\|Ga0126373_10868062	Not Available	966	Open in IMG/M
3300010358\|Ga0126370_11853296	Not Available	585	Open in IMG/M
3300010359\|Ga0126376_10539803	Not Available	1089	Open in IMG/M
3300010360\|Ga0126372_11758257	Not Available	662	Open in IMG/M
3300010361\|Ga0126378_12427576	Not Available	599	Open in IMG/M
3300010376\|Ga0126381_100119599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium → Agrobacterium tumefaciens complex → Agrobacterium tumefaciens	3406	Open in IMG/M
3300010376\|Ga0126381_103891570	Not Available	582	Open in IMG/M
3300010398\|Ga0126383_10680568	Not Available	1106	Open in IMG/M
3300016319\|Ga0182033_10541436	Not Available	1005	Open in IMG/M
3300016319\|Ga0182033_12047286	Not Available	522	Open in IMG/M
3300017937\|Ga0187809_10330992	Not Available	567	Open in IMG/M
3300018060\|Ga0187765_10003951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6170	Open in IMG/M
3300021402\|Ga0210385_11119357	Not Available	605	Open in IMG/M
3300021560\|Ga0126371_10184829	All Organisms → cellular organisms → Bacteria	2171	Open in IMG/M
3300021560\|Ga0126371_10198755	Not Available	2099	Open in IMG/M
3300021560\|Ga0126371_10572268	Not Available	1279	Open in IMG/M
3300021560\|Ga0126371_10667161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1188	Open in IMG/M
3300021560\|Ga0126371_10785249	Not Available	1099	Open in IMG/M
3300021560\|Ga0126371_11492835	Not Available	804	Open in IMG/M
3300027010\|Ga0207839_1009185	Not Available	1179	Open in IMG/M
3300027680\|Ga0207826_1021367	Not Available	1784	Open in IMG/M
3300031543\|Ga0318516_10561995	Not Available	653	Open in IMG/M
3300031573\|Ga0310915_10106065	All Organisms → cellular organisms → Bacteria	1904	Open in IMG/M
3300031573\|Ga0310915_11184160	Not Available	529	Open in IMG/M
3300031719\|Ga0306917_10475876	Not Available	980	Open in IMG/M
3300031910\|Ga0306923_10021682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6808	Open in IMG/M
3300031941\|Ga0310912_11429270	Not Available	522	Open in IMG/M
3300031954\|Ga0306926_10882900	Not Available	1072	Open in IMG/M
3300032001\|Ga0306922_11302640	Not Available	735	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.08%
Aquatic	Environmental → Aquatic	3.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.08%
Freshwater	Environmental → Aquatic → Freshwater	1.96%
Sediment	Environmental → Aquatic → Sediment	1.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.49%
Loam	Environmental → Terrestrial → Soil → Loam	19.61%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	45.10%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.41%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	19.61%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	27.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.49%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	19.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.65%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027010	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 64 (SPAdes)	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100091711	3300000597	Forest Soil	MTEAVIFVAALLILAIAIMTAIYGIVRDARPKPQRQSYRRHRPWNFK*
Ga0066388_1001761491	3300005332	Tropical Forest Soil	MTDALISVAAILALACSILATLYVIVRNAPSQPQRQSYRRHRPWNFK*
Ga0066388_1002880465	3300005332	Tropical Forest Soil	MTEAVIFVGALLILAIAILAALYGIVRNAPPQPQRQSYRRHRLWNFK*
Ga0066388_1021540541	3300005332	Tropical Forest Soil	MTETVIFASALLILASAILAAIYFIARDAPPQPQRQSYRRHRPWNYK*
Ga0066388_1030902742	3300005332	Tropical Forest Soil	MTEAVFFFAAMLTLAIAILAALYGIVGNAPPQPQPQSYRRHRPWNFK*
Ga0066388_1054372562	3300005332	Tropical Forest Soil	MTETVIFAAALLILTSAILAALYAIMRDAPPQPPRQSYRRHRPWNFK*
Ga0066388_1063429031	3300005332	Tropical Forest Soil	TVISIAAILAIALAILAALYVVLRNAPSYPQRQSYHRHRPWNFK*
Ga0066388_1064499112	3300005332	Tropical Forest Soil	MTEAVIFVAALLILASAILAAIYFIARDAPPQPQRQSYRRHRPWNFK*
Ga0066903_1001494956	3300005764	Tropical Forest Soil	MTEAVIFVAALLTLAIAILATLYGIARNAQSQRQYHCRHRPWNFK*
Ga0066903_1011271272	3300005764	Tropical Forest Soil	MTDEIIFIAAILTLASAILTALYGVAGTALSQPQRQSHRHRPWNFK*
Ga0066903_1012549243	3300005764	Tropical Forest Soil	CAGRCGYQDRDMTEAVFIAATPTLACAILGTLYGIVRNAPPQPSQQSYRPYRRHRPWNFN
Ga0066903_1013062772	3300005764	Tropical Forest Soil	MTEAVIFVAGLLIVASAILAALYVIVRDAPPRPQRQSYRRHRPWNFK*
Ga0066903_1017501952	3300005764	Tropical Forest Soil	MTETLIFVAAVLTVASGILATLYVIVRDTPPQPQRQSYRPHRLWNFK*
Ga0066903_1027457873	3300005764	Tropical Forest Soil	MTEAVIFVAAMLTLVIGILAALYGIVRDAQPQPQSQSYRRHRP*
Ga0066903_1029103494	3300005764	Tropical Forest Soil	MTEEIIFAAATLTLAGAILAALYGVARNASPQPQRQSYRRHRPWNFK*
Ga0066903_1031088662	3300005764	Tropical Forest Soil	MTETVISIAAILAIALAILAALYVVLRNAPSYPQRQSYHRHRPWNFK*
Ga0066903_1034833381	3300005764	Tropical Forest Soil	LLTLTCTILAALYFIVRDAPPQPQRQSYRRHRPWNYK*
Ga0066903_1051894212	3300005764	Tropical Forest Soil	MTEAINFAVAILTLASAILATLYVFARDASPRPQQQSYRRHRPWNFK*
Ga0066903_1064170352	3300005764	Tropical Forest Soil	MTEAVIFAAALLTLACAILAALFVIMRNAPSQPQRQFYRRHRPWNYK*
Ga0075015_1004824052	3300006102	Watersheds	MTEAVILGAAMLTLAVAILAALYGIVRNGPPQSQRQLYRRHRPWNLK*
Ga0079222_103207232	3300006755	Agricultural Soil	MNEAVIFLCAILILACAILATLYGVVRHAASEPKGQSYRRHRPWNFK*
Ga0126374_102597332	3300009792	Tropical Forest Soil	MTEAINFAVAILTLASTILATLYVFARDASPRPQQQSYRRHRPWNFK*
Ga0126373_101410005	3300010048	Tropical Forest Soil	MTETVISIAAILAIALAILAALYVVLRNAPSHPQRQSYRRHRPWNFK*
Ga0126373_108680622	3300010048	Tropical Forest Soil	MTEALFIAATLMLACAIMATLYGIVRNAPAQPTQQSYRLHRPWNFN*
Ga0126370_107218793	3300010358	Tropical Forest Soil	GMTEAVIFVAALLILACVILATLYGMVRSASPQPQRQSYRRHRPWNFK*
Ga0126370_117205571	3300010358	Tropical Forest Soil	MTDALILVAAILTLASAILAAIYTIVRDAPPQPQRQSYRRHRPWNYK*
Ga0126370_118532962	3300010358	Tropical Forest Soil	MTDEIIFVAAILTLASAILAALYGVAGTALSQPQRQSHRHRPWNFK*
Ga0126376_105398031	3300010359	Tropical Forest Soil	MTETVISIAAILAIALAILAALYVIVRNAPSHPQRQSYRRHRPWNFK*
Ga0126376_128388131	3300010359	Tropical Forest Soil	TETVISIAAILAIALLILAALYAVVRNAPSHPQRQTYRRHRPWNFK*
Ga0126372_117582571	3300010360	Tropical Forest Soil	MTEAVIFVAALLILASAILAAIYFIARDAPPQPQRQSYRRHRPWNYK*
Ga0126372_128686952	3300010360	Tropical Forest Soil	PGMTEAINFAVAILTLASAILAALYVFARDASPRPQQQSYRRHRPWNFK*
Ga0126378_124275761	3300010361	Tropical Forest Soil	MTDALIFVAAILTLASAILAAIYTIVRDAPPQPQRQSYRRHRLWNFK*
Ga0126379_106913584	3300010366	Tropical Forest Soil	MTEAVIFVAALLTLVIAILAAFYGLARNATPQPQRQSHRHRPWNFK*
Ga0126379_109736392	3300010366	Tropical Forest Soil	MIEAGIIFAALLILASAILAALYVIVRDAPPQPQRRSYRRHRPWNFK*
Ga0126381_1001195994	3300010376	Tropical Forest Soil	MTETVISIAAILAIALVILAVLYAVVRNAPSHPQRQSYRRHRPWNFK*
Ga0126381_1008534083	3300010376	Tropical Forest Soil	MTDALIFVAAILTLASAILAAIYTIVRDAPPQPQRQSYRRHRPWNYK*
Ga0126381_1038915702	3300010376	Tropical Forest Soil	MTETVISIAAILATALAILAALYVVVRDAPPHPQRQSYRRHRPWNFK*
Ga0126383_106805683	3300010398	Tropical Forest Soil	GMTETVISIAAILAIALVILAALYAVVRNAPSHPQRQSYRRHRPWNFK*
Ga0137379_107284792	3300012209	Vadose Zone Soil	VTEAVIIVAAILVLASAILAALYGIARNAAPKPRRQSYRRHRPWNYK*
Ga0126369_102138041	3300012971	Tropical Forest Soil	MTDALIFGVAILTLTCAILATLYFIVRDAPPQPQRQSYRRHRPWNYK*
Ga0126369_115350012	3300012971	Tropical Forest Soil	VRWPMRLLGGRGMTEEIIFAAAILTLASAILAALYGVTRNASLQPQQQSHRHRPWNFK*
Ga0182036_101813021	3300016270	Soil	LAIFAAILIVACAILAALYAIVRDAPPQSQRQSYRRHRLWNFKSRTRR
Ga0182033_105414362	3300016319	Soil	MTEEIIFAAAILTLASAILAALYGVARNASPQPQRQSYRRHRPWNFK
Ga0182033_112423302	3300016319	Soil	MTEAIEFAGAISTIASAILAALDVIVRDAPPPQRQSYRRHRLWNFK
Ga0182033_118716831	3300016319	Soil	AAFLTLASAILAAIYFVVRDAQPQPQRQSYRRHRPWNFK
Ga0182033_120472861	3300016319	Soil	MTEAVIFVAAMLTLAIAILAALYGIVGNAPPQPQPQSYRRHRPWNFK
Ga0182034_107967971	3300016371	Soil	MTEAVIFVAAMLTLAIAILAALYGIVRSAPPQPQRQSY
Ga0182040_102777983	3300016387	Soil	MTEALIFVAAMLTLAIAILTTLYGTVRNAPPQPQRQSYRRHRPWNFK
Ga0182037_102961471	3300016404	Soil	MTEAVIFVGGLLIVAGAILAALYVIVRDAPPQLQRQSHPHRPWNFK
Ga0182037_113311111	3300016404	Soil	MTEAVLVVAAILIVACAILAALYAIVRDAPPQSQRQSYRRHRLWNFK
Ga0182039_100896141	3300016422	Soil	ILTLASAILAAIYTIVRDAPPQPQRQSYRRHRPWNYK
Ga0182039_111851311	3300016422	Soil	MTEAIIFVAAILTLASAILAALYGLVRNAPPQPQRQSYRRHRPWNFK
Ga0182038_113781422	3300016445	Soil	MTEAIEFAGAISTIASAILAALDVIVRDAPPPQRQSYRRH
Ga0187809_103309922	3300017937	Freshwater Sediment	MTEPLIFIAGILILACAILATLYGVVRHAPAQPKRQSYRRHRPWNFK
Ga0187823_100337153	3300017993	Freshwater Sediment	MTEALIFIAGILILACAILATLYGVVRHAPAQPKRQSYRRHRPWNFK
Ga0187765_100039513	3300018060	Tropical Peatland	MTEAVIYVAAMLTLTMAILATLYGIVRNAPPRPQPQSYRRHRPWNFK
Ga0210385_111193572	3300021402	Soil	MSEAAIFVAALLTVAVVILAALYLIVRDAPPRQSYRRHRPVK
Ga0126371_100113829	3300021560	Tropical Forest Soil	MTEAVIFVAALLILAIAIMTAIYGIVRDARPKPQRQSYRRHRPWNFK
Ga0126371_101848293	3300021560	Tropical Forest Soil	MTEAINFAVAILTLASTILATLYVFARDASPRPQQQSYRRHRPWNFK
Ga0126371_101987553	3300021560	Tropical Forest Soil	MTDEIIFIAAILTLASAILTALYGVAGTALSQPQRQSHRHRPWNFK
Ga0126371_105722684	3300021560	Tropical Forest Soil	ATALAILAALYVVVRNAPSHPQRQSYRRHRPWNFK
Ga0126371_106671611	3300021560	Tropical Forest Soil	MTDALIFVAAILTLASAILAAIYTIVRDAPPQPQRQSYRRHRPWNYK
Ga0126371_107852492	3300021560	Tropical Forest Soil	MTETVISIAAILAIALAILAALYVVLRNAPSHPQRQSYRRHRPWNFK
Ga0126371_111109952	3300021560	Tropical Forest Soil	MTEEIIFAAAILTLASAILAALYGVARNASLQPQQQSHRHRPWNFK
Ga0126371_114928351	3300021560	Tropical Forest Soil	MTETVIILASLAIVTCAILTALYVIVRDAPPQPQRQSYRRHRLWNFK
Ga0126371_133160372	3300021560	Tropical Forest Soil	MTETVISIAAILATALAILAALYVVVRNEPPHPQRQSYRRHRPWNFK
Ga0207839_10091853	3300027010	Tropical Forest Soil	MTEAVIFVAAILTLAGAILATIYFIVRDAQPQPQRQSYRRHRPWNA
Ga0207826_10213672	3300027680	Tropical Forest Soil	MTEAVIFVAAILTLAGAILAAIYFIVRDAQPQPQRQSYRRHRPWNFK
Ga0209069_102030531	3300027915	Watersheds	SRGMTEAVIFLAAMLILAIAILAVIYGILRDVPPRS
Ga0318516_105619952	3300031543	Soil	MNQAVIFVAAILTLASAILARLYGIVRAAPPQPQRQSYRRH
Ga0318541_101330522	3300031545	Soil	MTVTFVAAMLTLAIAILTTLYGTVRNAPPQPQRQSYRRHRPWNFK
Ga0318541_105149812	3300031545	Soil	MTEAVIFVAATLTLAIAILATLYGTVQNAPPQPQRQSYRRHRPWNFK
Ga0318515_104803221	3300031572	Soil	MNQAVIFVAAILTLASAILARLYGIVRAAPPQPQRQSYRRHRPWNFK
Ga0318515_106595321	3300031572	Soil	MTEAVMFVAATLTLAIAILATLYGTVQNAPPQPQRQSYRRHRPWNFK
Ga0310915_101060651	3300031573	Soil	MTEAVIFVGGLLIVAGAILAALYVIVRDAPPRPQRQSYRRHRPWNFK
Ga0310915_101352792	3300031573	Soil	MTEAVLVVAAILIVACAILAALYAIVRDAPPQSQRQSYRRHRLWNFKSRTRRARG
Ga0310915_111841602	3300031573	Soil	MTEAIEFAGAISTIASAILAALYVIVRDAPPPQRQSYRRHRLWNFK
Ga0310686_1100612212	3300031708	Soil	MSEAVIYVAAILTLDVVILAALYFIVRNAPPQPQGQSYRRHRPWNYK
Ga0307474_110203742	3300031718	Hardwood Forest Soil	MTEAVILLAAMLTLAVAILAALYGIARNAPPQTERQLYHRHRRLNFK
Ga0306917_104758761	3300031719	Soil	MTETVISIAAIMTLAVAILATLYRIVRDAPPPQQPQQQSYRRHRPWNFK
Ga0306917_106914844	3300031719	Soil	MTEAVIFVAAMLTLAIAILAALYGIVRDAKPQPQSQSYRR
Ga0306918_100914915	3300031744	Soil	MTEAVIFVAAMLTLAIAILAALYGIVRDAKPQPQSQSYRRHRPTDNVRA
Ga0306918_109782782	3300031744	Soil	MTEAVIFVAAMLTLAIAILAALYGIVRSAPPQPQRQSYRQHRPWNFK
Ga0310917_103243713	3300031833	Soil	FAVAILTLASAILAALYVFARDVSPLPQQQSYRRHRPWNFK
Ga0306919_102969701	3300031879	Soil	MTEAINFVVAILTLASAILAALYVFARDVSPLPQQQSYRRHRPWNFK
Ga0306925_103044471	3300031890	Soil	MTDAVIFVAAMLTLAIAILAALYGIVRDAKPQPQSQSYRRHRPTDNVRA
Ga0306925_110701001	3300031890	Soil	MTDEIIFVAAILTLASAILAALYGVAGNASPQPQRQSHRHRPWNFK
Ga0306923_1002168210	3300031910	Soil	MTEAVIFVAAFLTLASAILAAIYFVVRDAQPQPQRQSYRRHRPWNFK
Ga0306923_101551011	3300031910	Soil	MTLAVTILAALYRIVRDAPPPQQPQQQSYRRHRPWNFK
Ga0306921_120965871	3300031912	Soil	CAGRRDYQGRDMTEAINFAVAILTLASAILAALYVFVRDAPPRPQQQSYRRHRPWNFK
Ga0310912_114292702	3300031941	Soil	MTEAINFAVAILTLASAILAALYVFVRDAPPRPQQQSYRRHRPWNFK
Ga0310916_102997981	3300031942	Soil	MTGAVLVVAAILIVACAILAALYAIVRDAPPQSQRQSYRRHRLWNFKSRTRRARG
Ga0310916_115962642	3300031942	Soil	MTEAVIFVAEILTLASAILAALYVIVRDAPPQPQRQSHRHRPWNFK
Ga0306926_108829002	3300031954	Soil	MTLAVTILAALYRIVRDAPPPPQQQSYRRHRPWNFK
Ga0318530_103887822	3300031959	Soil	MTEAINFAVAILTLASAILAALYVFARDVSPLPQQQSYRRHRPWNFK
Ga0306922_113026403	3300032001	Soil	TLAVTILAALYRIVRDAPPPPQQQSYRRHRPWNFK
Ga0310911_106007901	3300032035	Soil	MTEAVIFVGGLLIVAGAILAALYVIVRDAPPRPQRQSY
Ga0318549_105041042	3300032041	Soil	MTEAVIFVAATLTLAIAILATLYGTVQNAPPQPQRQSYRR
Ga0318558_106469512	3300032044	Soil	INFVVAILTLASAILAALYVFARDVSPLPQQQSYRRHRPWNFK
Ga0306920_1007715373	3300032261	Soil	MTGAVLVVAAILIVACAILAALYAIVRDAPPQSQRQSYRRHRLW
Ga0306920_1023216701	3300032261	Soil	MTEAIEFAGAISTIASAILAALDVIVRDAPPPQRQSY
Ga0310914_113463472	3300033289	Soil	VAILTLASAILAALYVFARDVSPLPQQQSYRRHRPWNFK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F100922

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences